BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase
YqgF [Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL
Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ
Sbjct: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG
Sbjct: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
>gi|114765456|ref|ZP_01444566.1| hypothetical protein 1100011001321_R2601_10219 [Pelagibaca
bermudensis HTCC2601]
gi|114542166|gb|EAU45197.1| hypothetical protein R2601_10219 [Roseovarius sp. HTCC2601]
Length = 158
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IED +L ++ +A +DLGTK IG+A+SD A P + RKK T A LL
Sbjct: 1 MIHDEIEDFAAALPRDRALAGLDLGTKTIGVAVSDRLLTVATPLETVKRKKFTLDAERLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I ++GLP NM+GSEGPR STRAF N R P FWDERL+TV+A++
Sbjct: 61 EILVKREIGGVVLGLPRNMDGSEGPRCQSTRAFARNF-SRLWDGPVTFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR KR + +D +AA+ ILQ LDR+ L ++
Sbjct: 120 ALLEADTSRAKRAELIDHVAASYILQGALDRLRHLRAN 157
>gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 157
Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE+ L P + +A +DLGTK IG+A+SD A P + RKK TQ A L+
Sbjct: 1 MIHEQIEEFAAILPPMRALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA ++GLP NM+GSEGPR STRAF N + P FWDERL+TV+A++
Sbjct: 61 EILRQREIAGVVLGLPRNMDGSEGPRCQSTRAFARNF-SQLWDGPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + SR+KR + +D +AA+ ILQ VLDR+ L S
Sbjct: 120 ALLEADTSRRKRAELIDHVAASYILQGVLDRLRNLRS 156
>gi|90417721|ref|ZP_01225633.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337393|gb|EAS51044.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 156
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ +E+ ++ + IA +DLGTK IGLA+SD G+RFA PR L R K T A L+
Sbjct: 1 MAIVSLEEFADAVPSGKTIAGLDLGTKTIGLAVSDRGQRFATPRKVLRRTKFTADANALV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +NI +IGLPLNM+GSEGPR +TRAF+ N R P + WDERL+TV+A++
Sbjct: 61 AALNEDNIVGIVIGLPLNMDGSEGPRAQATRAFLRNY-SRFDERPVLLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ +VSRKKR +++DS AA+ ILQ LDR+S L S
Sbjct: 120 GLLEADVSRKKRAERIDSAAASFILQGALDRLSSLRS 156
>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 167
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 140/159 (88%), Positives = 152/159 (95%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MSILLIEDLVKSLKPNQPIASIDLGTK+IG+AISD GRRFAHPRPFL+RKK+TQTALELL
Sbjct: 1 MSILLIEDLVKSLKPNQPIASIDLGTKKIGIAISDLGRRFAHPRPFLIRKKITQTALELL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF TTENIAAF+IGLPLNMNGSEGPRV STRAFV NMIDR++ VPF+FWDERLTTVSAQQ
Sbjct: 61 SFATTENIAAFVIGLPLNMNGSEGPRVQSTRAFVQNMIDREINVPFIFWDERLTTVSAQQ 120
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
ILIDM+VSRKKR QKVDSIAA+LILQEVLDRIS L+SS+
Sbjct: 121 ILIDMDVSRKKRAQKVDSIAASLILQEVLDRISSLKSSE 159
>gi|254485728|ref|ZP_05098933.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
gi|214042597|gb|EEB83235.1| conserved hypothetical protein TIGR00250 [Roseobacter sp. GAI101]
Length = 161
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I D +L P Q + +DLG K IG+A++D A P + RKK A L
Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVTDSFLSVATPLETVRRKKFGLDAALLT 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I I+GLP NM+GSEGPR STRAF N D+ V +P FWDERL+TV+A++
Sbjct: 61 QIIADRRIGGVILGLPRNMDGSEGPRCQSTRAFARNF-DKLVDLPIGFWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++ + SRK+R + +D +AA+ ILQ VLDR+S L + G
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGVLDRLSVLRAKGG 159
>gi|294677840|ref|YP_003578455.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
gi|294476660|gb|ADE86048.1| holliday junction resolvase YqgF [Rhodobacter capsulatus SB 1003]
Length = 159
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++D +L +A +DLGTK IG+A+SD R A P + R+K + +L+
Sbjct: 1 MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDLADLM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA F++GLP+NM+GSEGPR STRAF +++ +P FWDERL+TV+A++
Sbjct: 61 KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFAR-NLEKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+++ ++SRK+R + VD +AA ILQ LDR++ L + G
Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159
>gi|6226491|sp|Q52673|RUVX_RHOCA RecName: Full=Putative Holliday junction resolvase
gi|1353874|gb|AAB01816.1| unknown [Rhodobacter capsulatus]
Length = 159
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++D +L +A +DLGTK IG+A+SD R A P + R+K T +L+
Sbjct: 1 MICPGMDDFAAALPRVGALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFTLDVADLM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA F++GLP+NM+GSEGPR STRAF +++ +P FWDERL+TV+A++
Sbjct: 61 KTVAERQIAGFVLGLPVNMDGSEGPRAQSTRAFAR-NLEKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+++ ++SRK+R + VD +AA ILQ LDR++ L + G
Sbjct: 120 AMLEADLSRKRRAELVDHVAAGFILQGALDRLAHLGRAHG 159
>gi|126729458|ref|ZP_01745272.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
gi|126710448|gb|EBA09500.1| hypothetical protein SSE37_24699 [Sagittula stellata E-37]
Length = 156
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE +L P Q + +DLGTK IG+A+SD R A P + RKK A L
Sbjct: 1 MIHETIEGFAAALPPMQALMGLDLGTKTIGVAVSDGLRSVATPLETVKRKKFGVDAERLQ 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I I I+GLP NM+G+EGPR STRAF N P +WDERL+TV+A++
Sbjct: 61 ALIAGRRIGGLILGLPRNMDGTEGPRCQSTRAFARNF-AALWDGPIGYWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + +RK+R + +D +AA+ ILQ LDR+ FL +
Sbjct: 120 ALLEADTTRKRRAEVIDHVAASYILQGALDRLRFLGA 156
>gi|119383262|ref|YP_914318.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
gi|167012745|sp|A1AZC8|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase
gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +E ++L +A +DLGTK IG+A+SD R A P + R K T A LL
Sbjct: 1 MICENVETFAEALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLP NM+GSEGPR STRAF ++R +P FWDERL+TV+A++
Sbjct: 61 KIVQDRALVGLVLGLPRNMDGSEGPRAQSTRAFAR-NLERLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++ + SRK+R + +D +AA ILQ LDR+ FL ++
Sbjct: 120 ALLEGDTSRKRRAEVIDQVAAGYILQGALDRLRFLGRTE 158
>gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +L PI +DLGTK IG+AISD A P + RKK + A LL
Sbjct: 1 MICETIGAFAMTLPKGHPIMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T +A ++GLP NM+GSEGPR STRAF ++ +P FWDERL+TV+A++
Sbjct: 61 EIATQREVAGLVLGLPRNMDGSEGPRCQSTRAFAR-NLEPLTELPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++ + SRK+R + +D++AA+ ILQ VLDR++ + +++
Sbjct: 120 ALLEADTSRKRRAEVIDNVAASYILQGVLDRLTHMRAAQ 158
>gi|310816166|ref|YP_003964130.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
Y25]
gi|308754901|gb|ADO42830.1| Putative Holliday junction resolvase [Ketogulonicigenium vulgare
Y25]
Length = 156
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +ED +L P + + +DLGT IG+A+SD A P + RKK + A LL
Sbjct: 1 MICESVEDFAAALPPMRAVCGLDLGTVTIGVAVSDLMLSVASPLETIKRKKFSLDAEALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I NIA ++GLPLNM+GSEGPR STRAF + R +P V+WDERL+TV+A++
Sbjct: 61 KIIAARNIAGIVLGLPLNMDGSEGPRAQSTRAFAR-NLSRLTDLPIVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + SRK+R + +D +AA ILQ VLDR+ L
Sbjct: 120 ALLEADTSRKRRDEVIDHVAAGFILQGVLDRLRHLRR 156
>gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
Y4I]
Length = 157
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + ED +L P + +DLGTK IG+A+SD A P + RKK + A LL
Sbjct: 1 MIHDVFEDFAAALPPMSALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I +I+ ++GLP NM+G+EGPR STRAF + + +P FWDERL+TV+A++
Sbjct: 61 EIIQARDISGILLGLPRNMDGTEGPRCQSTRAFAR-NLMQLTDLPISFWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + +RK+R + +D +AA+ ILQ LDR+ L++
Sbjct: 120 ALLEADTTRKRRAEVIDHVAASYILQGALDRMRHLKNG 157
>gi|110633714|ref|YP_673922.1| Holliday junction resolvase YqgF [Mesorhizobium sp. BNC1]
gi|118597215|sp|Q11IL8|RUVX_MESSB RecName: Full=Putative Holliday junction resolvase
gi|110284698|gb|ABG62757.1| Holliday junction resolvase YqgF [Chelativorans sp. BNC1]
Length = 160
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 84/160 (52%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS++ IE+L K+ +P+A +DLGTK IG+AISD G FA PR +L RKK + A LL
Sbjct: 1 MSVVSIEELEKARAYGRPLAGLDLGTKTIGVAISDLGLSFATPRAYLPRKKFQEDAKALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ EN I+GLP+NM+GSEGPR STRAFV + +PF FWDERL+TV+A++
Sbjct: 61 HLLSRENAGGVIVGLPINMDGSEGPRAQSTRAFVR-NLQPLTKLPFAFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI+M+VSR KR Q++DS AAA ILQ LDR+ L + G
Sbjct: 120 ALIEMDVSRAKRAQRIDSAAAAFILQGALDRLQALRADPG 159
>gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
Length = 160
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L ++D + L PN + +DLGTK IGLA+SD GR A P + RKK TQ A +LL
Sbjct: 7 LSLDDFLSVLPPNSRLIGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLDIC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ ++ ++GLPLNM+GSEGPR +TRAF + +K +P +WDERL+T + + L+
Sbjct: 67 AKQEVSGLVLGLPLNMDGSEGPRAQATRAFCR-NLSQKTELPITYWDERLSTAAVTRTLL 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ + SR KR + VD +AAA ILQ LDR+ + +S
Sbjct: 126 EADSSRAKRAEVVDKMAAAFILQGFLDRLGHMGAS 160
>gi|84517362|ref|ZP_01004716.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
gi|84508842|gb|EAQ05305.1| hypothetical protein SKA53_06000 [Loktanella vestfoldensis SKA53]
Length = 158
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED L + +A +DLGT IG+A+SD R A P + R+K T A L
Sbjct: 1 MICATPEDFAAQLPRHGAVAGLDLGTVTIGVAVSDLMRSVATPLETIKRRKFTLDAARLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T IA ++GLP NM+GSEGPR +TRAF +++ +P FWDERL+TV+A++
Sbjct: 61 EITTHRMIAGLVLGLPRNMDGSEGPRCQATRAFAR-NLEKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+++ ++SRK+R +++D+IAA+ ILQ +LDR+ LE+
Sbjct: 120 AMLEADMSRKRRAERIDNIAASYILQGMLDRLRHLEARA 158
>gi|83954179|ref|ZP_00962899.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
gi|83841216|gb|EAP80386.1| hypothetical protein NAS141_17774 [Sulfitobacter sp. NAS-14.1]
Length = 161
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I D +L P Q + +DLG K IG+A+SD A P + RKK A L
Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDATRLS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++
Sbjct: 61 EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR++R + +D +AA ILQ VLDR+ +++
Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157
>gi|259418877|ref|ZP_05742794.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259345099|gb|EEW56953.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 157
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED +L + +D G K IG+A+SD A P + RKK T + LL
Sbjct: 1 MIHDAFEDFAATLPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I+ +I I+GLP NM+GSEGPR STRAF + R +P FWDERL+TV+A++
Sbjct: 61 EIISGRDINGIILGLPRNMDGSEGPRCQSTRAFAR-NLSRVTDLPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ ++S
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRLRHIKSG 157
>gi|146277916|ref|YP_001168075.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17025]
gi|167012753|sp|A4WTQ6|RUVX_RHOS5 RecName: Full=Putative Holliday junction resolvase
gi|145556157|gb|ABP70770.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17025]
Length = 160
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE+ + +L + + +DLGTK IG+A++D RR A P + R K T+ A L
Sbjct: 1 MIHESIEEFLAALPRSGALIGLDLGTKTIGVAVTDGLRRIATPLLTIRRTKFTEDAARLR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLP NM+GSEGPR STRAF + + + +P +WDERL+TV+A++
Sbjct: 61 AITAERGLVGIVLGLPRNMDGSEGPRAQSTRAFAR-NLSQVLPLPIGYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI+ + SRK+R + +D +AA ILQ VLDR+ +L +
Sbjct: 120 ALIEADTSRKRRAEVIDHVAAGYILQGVLDRLDWLGRER 158
>gi|83943004|ref|ZP_00955464.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
gi|83846012|gb|EAP83889.1| hypothetical protein EE36_12523 [Sulfitobacter sp. EE-36]
Length = 161
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I D +L P Q + +DLG K IG+A+SD A P + RKK A L
Sbjct: 1 MIYDDITDFAAALPPMQALIGLDLGEKTIGVAVSDSFLSIATPLETVRRKKFGVDAARLS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEG R STRAF N DR +P FWDERL+TV+A++
Sbjct: 61 EIIAARGIGGVVLGLPRNMDGSEGARCQSTRAFARNF-DRLGDIPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SR++R + +D +AA ILQ VLDR+ +++
Sbjct: 120 ALLEADTSRRRRAEVIDHVAAGYILQGVLDRLRVIKAQ 157
>gi|99080808|ref|YP_612962.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
gi|124107444|sp|Q1GI16|RUVX_SILST RecName: Full=Putative Holliday junction resolvase
gi|99037088|gb|ABF63700.1| Holliday junction resolvase YqgF [Ruegeria sp. TM1040]
Length = 157
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED +L + +D G K IG+A+SD A P + RKK T + LL
Sbjct: 1 MIHDAFEDFAAALPQMTALVGLDFGEKTIGVAVSDRIGAVATPLETIRRKKFTLDSNRLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I +I ++GLP NM+GSEGPR STRAF + R +P FWDERL+TV+A++
Sbjct: 61 EIIAGRDINGILLGLPRNMDGSEGPRCQSTRAFAR-NLSRVTDLPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ + SS
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIRSS 157
>gi|84499203|ref|ZP_00997491.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
gi|84392347|gb|EAQ04558.1| hypothetical protein OB2597_04730 [Oceanicola batsensis HTCC2597]
Length = 161
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +E+ +L P + IA +D G K IG+A+SD A P + R+K Q A L
Sbjct: 1 MIHETVEEFAAALPPMRAIAGLDFGDKTIGVAVSDTFLSVATPLETIRRRKFGQDADALS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDERLTTVSA 118
+ + I ++GLP NM+GSEGPR STRAF N+ R +P FWDERL+TV+A
Sbjct: 61 ALLAARTIGGLVLGLPRNMDGSEGPRCQSTRAFARNLARRPDFADLPLTFWDERLSTVAA 120
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
++ L++ + SR++R + +D +AA ILQ LDR+ L+
Sbjct: 121 ERALLEADTSRRRRAEVIDHVAAGYILQGALDRLRHLK 158
>gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae
WSM419]
gi|167013052|sp|A6U816|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase
gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419]
Length = 165
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 86/159 (54%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL IE+L + L P Q +A +DLGTK IGL++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTIEELAERLPPYQAVAGLDLGTKTIGLSVSDLGRRFATPRDVIRRVKFGIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +AAF+IGLP+NM+GSEGPR +TRAFV M +R +P V WDERL+TV+A++
Sbjct: 61 FFAEKEKVAAFVIGLPVNMDGSEGPRCQATRAFVRTMGER-TDIPSVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+LI+M+VSRKKR ++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRADRIDSAAASFILQGALDRLALLARGA 158
>gi|255261332|ref|ZP_05340674.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255103667|gb|EET46341.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 158
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + ++ +A +DLGT IG+A+SD A P + RKK + A LL
Sbjct: 1 MIFNDITEFAAAVPQMSALAGLDLGTVTIGVAVSDRFLSVATPLETIRRKKFSLDAARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++GLP NM+GSEGPR STRAF +++ +P FWDERL+TV+A++
Sbjct: 61 EIAKDRELGGLVLGLPYNMDGSEGPRCQSTRAFAR-NLEKLTDLPISFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + +RK+R + +D +AA ILQ VLDR + L +S
Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGVLDRFAHLRAS 157
>gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
Length = 162
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 119/159 (74%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ +EDL L P Q IA +DLGTK IGLA+SD R A PRP + R+K T A++LL
Sbjct: 1 MAVMEVEDLEAFLTPGQTIAGLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + A +IGLP+NM+GSEGPRV +TRAFV NMI++ +PFVFWDERL+TV+A++
Sbjct: 61 TALKRDQVGAVVIGLPVNMDGSEGPRVQATRAFVRNMIEK-TDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI+M+VSRKKR +++DS AA+ ILQ LDR+ L ++
Sbjct: 120 ALIEMDVSRKKRAERIDSAAASFILQGALDRLQGLRAAA 158
>gi|163746885|ref|ZP_02154242.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
gi|161379999|gb|EDQ04411.1| hypothetical protein OIHEL45_15819 [Oceanibulbus indolifex HEL-45]
Length = 157
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M D + +L P Q + +DLG K IG+A+SD + A P + RKK A L
Sbjct: 1 MIFDDTADFLAALPPMQALIGLDLGEKTIGVAVSDSFQSVATPLETVRRKKFGLDAARLA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEGPR STRAF N DR +P +WDERL+TV+A++
Sbjct: 61 EIIAKRRIGGLVLGLPRNMDGSEGPRCQSTRAFARNF-DRLTPLPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + +RK+R + +D +AA ILQ +LDR+ +
Sbjct: 120 ALLEADTTRKRRAEVIDHVAAGYILQGLLDRLQVMRRD 157
>gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi DSS-3]
gi|62900907|sp|Q5LQY2|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase
gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi DSS-3]
Length = 154
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +E+ +L P +A +DLG K IG+A+SD R A P + RKK A LL
Sbjct: 1 MICETVEEFAAALPPFSALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + IA ++GLP NM+GSEGPR STRAF + R V FWDERL+TV+A++
Sbjct: 61 AIVEQREIAGIVLGLPRNMDGSEGPRCQSTRAFAR-NLSRLTEVAITFWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++ + +RK+R + +D +AAA ILQ LDR+ L
Sbjct: 120 ALLEADTTRKRRSEVIDHVAAAYILQGALDRLRNL 154
>gi|254439741|ref|ZP_05053235.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
gi|198255187|gb|EDY79501.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 307]
Length = 162
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D +L P P+A +DLGTK IG+A+SD G A P + R K AL L
Sbjct: 1 MIFEDVIDFAAALPPYAPLAGLDLGTKTIGVAVSDGGLTIASPLETIKRSKFQADALRLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ IA ++GLP NM+GSEGPR STRAF + R +P +WDERL+TV+A++
Sbjct: 61 EITSHRAIAGIVLGLPRNMDGSEGPRAQSTRAFAR-NLSRLTDLPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D++AA++ILQ +LDR+ +++
Sbjct: 120 ALLEADTSRKRRAEVIDNVAASIILQGMLDRLRNIKAQ 157
>gi|86357479|ref|YP_469371.1| holliday junction resolvase protein [Rhizobium etli CFN 42]
gi|146325597|sp|Q2K942|RUVX_RHIEC RecName: Full=Putative Holliday junction resolvase
gi|86281581|gb|ABC90644.1| probable holliday junction resolvase protein [Rhizobium etli CFN
42]
Length = 164
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 90/160 (56%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ + L P Q IA +DLGTK IGL+ISD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRIKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F + E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PF++WDERL+TV+A++
Sbjct: 61 DFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFIYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+LI+M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 VLIEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 159
>gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
Length = 157
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED +L +A +D G K +G+AISD A P + RKK T A L
Sbjct: 1 MIYDEFEDFAAALPGFTALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADHLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I ++GLP NM+GSEGPR TRAF + R +P FWDERL+TV+A++
Sbjct: 61 EIVKKREIGGLVLGLPRNMDGSEGPRCQKTRAFAR-NLSRLTELPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ L++
Sbjct: 120 ALLEADTSRKRRAELIDHVAASYILQGALDRMRHLKND 157
>gi|221639098|ref|YP_002525360.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
KD131]
gi|254767523|sp|B9KRR7|RUVX_RHOSK RecName: Full=Putative Holliday junction resolvase
gi|221159879|gb|ACM00859.1| Holliday junction resolvase [Rhodobacter sphaeroides KD131]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L
Sbjct: 1 MIHDRIEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLP NM+GSEGPR STRAF + + + +P FWDERL+TV+A++
Sbjct: 61 AIADERRLVGIVLGLPRNMDGSEGPRAQSTRAFAR-NLVQVLPLPVGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++ + SRK+R + +D +AA ILQ VLDR+ +L G
Sbjct: 120 ALLEADTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159
>gi|77463236|ref|YP_352740.1| putative endonuclease involved in recombination [Rhodobacter
sphaeroides 2.4.1]
gi|126462110|ref|YP_001043224.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
ATCC 17029]
gi|332558114|ref|ZP_08412436.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
gi|146325603|sp|Q3J2Z5|RUVX_RHOS4 RecName: Full=Putative Holliday junction resolvase
gi|167012752|sp|A3PJD6|RUVX_RHOS1 RecName: Full=Putative Holliday junction resolvase
gi|77387654|gb|ABA78839.1| putative endonuclease involved in recombination [Rhodobacter
sphaeroides 2.4.1]
gi|126103774|gb|ABN76452.1| Holliday junction resolvase YqgF [Rhodobacter sphaeroides ATCC
17029]
gi|332275826|gb|EGJ21141.1| Holliday junction resolvase-like protein [Rhodobacter sphaeroides
WS8N]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IED + SL +A +DLGTK +G+A+SD RR A P + R K T+ A +L
Sbjct: 1 MIHDRIEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRTKFTEDAAKLK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLP NM+GSEGPR STRAF + + + +P FWDERL+TV+A++
Sbjct: 61 AIAAERRLVGIVLGLPRNMDGSEGPRAQSTRAFAR-NLVQVLPLPVGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++ + SRK+R + +D +AA ILQ VLDR+ +L G
Sbjct: 120 ALLEADTSRKRRAEVIDHVAAGYILQGVLDRLDWLGREGG 159
>gi|254477517|ref|ZP_05090903.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
gi|214031760|gb|EEB72595.1| conserved hypothetical protein TIGR00250 [Ruegeria sp. R11]
Length = 157
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E ++ PIA +D G K +G+AISD A P + RKK T A +L
Sbjct: 1 MIYDDFEAFAAAVPSLSPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAEKLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I A ++GLP NM+G+EGPR TRAF + + +P FWDERL+TV+A++
Sbjct: 61 EIVKAREIGALLLGLPRNMDGTEGPRCQKTRAFAR-NLSQLTDLPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L++ + SRK+R + +D +AA+ ILQ LDR+ L+
Sbjct: 120 ALLEADTSRKRRSEVIDHVAASYILQGALDRMRHLK 155
>gi|126739041|ref|ZP_01754735.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
gi|126719658|gb|EBA16366.1| hypothetical protein RSK20926_21614 [Roseobacter sp. SK209-2-6]
Length = 157
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE+ +++ +A +D G K IG+AISD A P + RKK T A L
Sbjct: 1 MICETIEEFAQAVPGFTALAGLDFGEKTIGIAISDRIGAVATPLETIRRKKFTLDAERLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++GLP NM+GSEGPR TRAF +++ +P FWDERL+TV+A++
Sbjct: 61 EITKAREIGGLVLGLPRNMDGSEGPRCQKTRAFAR-NLEKLTELPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L++ + SRK+R + +D +AA+ ILQ LDR+ ++
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHMK 155
>gi|260575164|ref|ZP_05843165.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
gi|259022786|gb|EEW26081.1| Holliday junction resolvase YqgF [Rhodobacter sp. SW2]
Length = 160
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/161 (43%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
MS+L IE+ +L + +A +D G K IG+A+SD R A P + R K T A L
Sbjct: 1 MSVLETIEEFAATLPARRAVAGLDFGEKTIGVAVSDLSRSVATPLLTIRRVKFTDDAAAL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
IT IA I+GLP NM+GSEGPR +TRAF + R +P FWDERL+TV+A
Sbjct: 61 AKIITERQIAGLILGLPRNMDGSEGPRAQATRAFAR-NLSRLTPLPIGFWDERLSTVAAT 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ L++ + SRK+R + +D +AA ILQ VLDR++ + G
Sbjct: 120 RALLEADTSRKRRAEVIDHVAAGYILQGVLDRMAHMTREAG 160
>gi|126736029|ref|ZP_01751773.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
gi|126714586|gb|EBA11453.1| hypothetical protein RCCS2_02303 [Roseobacter sp. CCS2]
Length = 158
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E V ++ +A +DLGT IG+A+SD R A P + RKK A +LL
Sbjct: 1 MICDTPETFVAAIPDRGALAGLDLGTVTIGVAVSDVLRSVATPLETIKRKKFGVDAAKLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T + ++GLP NM+GSEGPR +TRAF +++ +P FWDERL+TV+A++
Sbjct: 61 ELTTHRLVTGLVLGLPRNMDGSEGPRCQATRAFAR-NLEKLTPLPITFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA ILQ +LDR++ L+++
Sbjct: 120 ALLEADTSRKRRAEVIDHVAAGYILQGMLDRMAHLKAT 157
>gi|89068321|ref|ZP_01155731.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
gi|89046238|gb|EAR52296.1| hypothetical protein OG2516_02629 [Oceanicola granulosus HTCC2516]
Length = 157
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ED +L + + +DLGT+ IG+A+SD R A P + RKK A LL
Sbjct: 1 MICDSAEDFAAALPDHGALVGLDLGTRTIGVAVSDGLRAVATPLQTIARKKFGVDAAALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I ++GLP NM+GSEGPR STR F ++R +P FWDERL+TV+A++
Sbjct: 61 AICEHRAITGIVLGLPRNMDGSEGPRCQSTRGFAR-NLERLTPLPIAFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L++ + SR++R + +D +AA +ILQ +LDR+ L
Sbjct: 120 ALLEADTSRRRRGEVIDHVAAGVILQGMLDRLRHLR 155
>gi|15965062|ref|NP_385415.1| hypothetical protein SMc01355 [Sinorhizobium meliloti 1021]
gi|307301133|ref|ZP_07580902.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
gi|32130055|sp|Q92QL0|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase
gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306904088|gb|EFN34674.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti BL225C]
Length = 165
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 88/159 (55%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF E IAAFIIGLP+NM+GSEGPR +TRAFV NM ++ +PFV WDERL+TV+A++
Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRNMGEK-TDIPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+LI+M+VSRKKR +++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158
>gi|307317866|ref|ZP_07597304.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
gi|306896628|gb|EFN27376.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
Length = 165
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 87/159 (54%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL +E+L + L P Q +A +DLGTK IG+++SD GRRFA PR + R K A LL
Sbjct: 1 MAILTMEELAERLPPYQSVAGLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
SF E IAAFIIGLP+NM+GSEGPR +TRAFV M ++ +PFV WDERL+TV+A++
Sbjct: 61 SFAEKEKIAAFIIGLPVNMDGSEGPRCQATRAFVRTMGEK-TDIPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+LI+M+VSRKKR +++DS AA+ ILQ LDR++ L
Sbjct: 120 VLIEMDVSRKKRAERIDSAAASFILQGALDRLASLARGA 158
>gi|110679064|ref|YP_682071.1| hypothetical protein RD1_1766 [Roseobacter denitrificans OCh 114]
gi|118597221|sp|Q169F8|RUVX_ROSDO RecName: Full=Putative Holliday junction resolvase
gi|109455180|gb|ABG31385.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 163
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D + +L + + +DLGT+ IG+A+SD A P + R+K T A L
Sbjct: 1 MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
+ + ++GLP NM+GSEGPR STRAF N+ +P FWDERL+TV+A+
Sbjct: 61 DIVAQRRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAE 120
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ L++ + SRK+R + +D +AAA ILQ LDRI + + +
Sbjct: 121 RALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ 160
>gi|260433278|ref|ZP_05787249.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417106|gb|EEX10365.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 154
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E+ +L P Q + +DLG K IG+A+SD R A P + RKK + LL
Sbjct: 1 MIHDGFEEFAAALPPMQALMGLDLGEKTIGVAVSDRMRGVASPLETVRRKKFKLDSARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T I ++GLP NM+GSEGPR STRAF + + +P FWDERL+TV+A++
Sbjct: 61 EIATDREIGGIVLGLPRNMDGSEGPRCQSTRAFAR-NLSQLTDIPIGFWDERLSTVAAKK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++ + +RK+R Q +D +AA ILQ LDR+ FL
Sbjct: 120 ALLEADTTRKRRGQVIDHVAAGYILQGALDRLRFL 154
>gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW]
gi|226731644|sp|B6IN25|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase
gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 188
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I + +L SL N + +DLG K IGLA+SDPG A P + R K TQ A EL
Sbjct: 1 MAIRNLMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK----VYVPFVFWDERLTTV 116
+ ++ A ++GLP+NM+G+EGPR S R F ++ R FWDERL+T
Sbjct: 61 RAMRDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTS 120
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ ++++I +++RK+R + VD +AAA ILQ LDR+ +++ G
Sbjct: 121 AVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQGDAAPG 164
>gi|328543472|ref|YP_004303581.1| endonuclease involved in recombination [polymorphum gilvum
SL003B-26A1]
gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum
gilvum SL003B-26A1]
Length = 166
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L +ED V +L P + +DLGT+ IGLA+SD GR A P + R+K T A +LL
Sbjct: 7 LSLEDFVAALAPGTRLIGLDLGTRTIGLALSDLGRGIASPLETIRRRKFTLDAEQLLKIC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ ++GLPLNM+GSEGPRV +TRAF + K +P +WDERL+T + + LI
Sbjct: 67 AEHRVGGLVLGLPLNMDGSEGPRVQATRAFAR-NLAEKTDLPITYWDERLSTAAVTRTLI 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ + SR +R + VD +AAA ILQ LDR+ +L S+
Sbjct: 126 EADRSRARRAELVDKMAAAYILQGFLDRLGYLSRSR 161
>gi|163739973|ref|ZP_02147378.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
gi|163743191|ref|ZP_02150573.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
gi|161383608|gb|EDQ07995.1| hypothetical protein RG210_14860 [Phaeobacter gallaeciensis 2.10]
gi|161386718|gb|EDQ11082.1| Holliday junction resolvase YqgF [Phaeobacter gallaeciensis BS107]
Length = 157
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E ++ PIA +D G K +G+AISD A P + RKK T A L
Sbjct: 1 MIYDDFETFAAAVPNFTPIAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDAARLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP NM+G+EGPR TRAF + + +P FWDERL+TV+A++
Sbjct: 61 EIVKDREVGALLLGLPRNMDGTEGPRCQKTRAFAR-NLAKLTELPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ +++
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRMRHIKAG 157
>gi|254454337|ref|ZP_05067774.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 238]
gi|198268743|gb|EDY93013.1| conserved hypothetical protein TIGR00250 [Octadecabacter
antarcticus 238]
Length = 158
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D +L P+A +DLGTK IG+A+ D G A P + R K A L
Sbjct: 1 MIFEDVIDFAAALPRYAPLAGLDLGTKTIGVAVCDGGLIIASPLETIKRSKFQADATRLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+A ++GLP NM+GSEGPR STRAF + R +P +WDERL+TV+A++
Sbjct: 61 EITAHREVAGIVLGLPRNMDGSEGPRAQSTRAFAR-NLSRLSDLPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + SRK+R + +D+IAA++ILQ +LDR+ +++
Sbjct: 120 ALLEADTSRKRRAEVIDNIAASIILQGLLDRLRNIKA 156
>gi|218661529|ref|ZP_03517459.1| holliday junction resolvase protein [Rhizobium etli IE4771]
Length = 166
Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P + IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 3 MTVLTIEEMAATLAPGKAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 63 DFAATEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 121
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 122 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSAG 161
>gi|190891542|ref|YP_001978084.1| holliday junction resolvase [Rhizobium etli CIAT 652]
gi|226731642|sp|B3PXX0|RUVX_RHIE6 RecName: Full=Putative Holliday junction resolvase
gi|190696821|gb|ACE90906.1| holliday junction resolvase protein [Rhizobium etli CIAT 652]
Length = 164
Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 118/160 (73%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A F+IGLP+NM+GS GPRV +TRAFV NM ++ +PFV+WDERL+TV+A++
Sbjct: 61 DFAAKERVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEEKTA-LPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|83952340|ref|ZP_00961071.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
gi|83836013|gb|EAP75311.1| putative endonuclease involved in recombination [Roseovarius
nubinhibens ISM]
Length = 158
Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M E + L + +DLGTK +G+A+SD R A P + R+K T A L
Sbjct: 1 MIHDAFESFAEGLPAMGALMGLDLGTKTVGVAVSDGMRGVATPLETVKRQKFTLDAARLQ 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++ ++GLP NM+GSEGPR STRAF N + +P FWDERL+TV+A++
Sbjct: 61 ELIAARSVVGVVLGLPRNMDGSEGPRCQSTRAFARNF-AQLTDLPIGFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++ + SRK+R + +D +AA+ ILQ LDR+ + S
Sbjct: 120 ALLEADTSRKRRAEVIDHVAASYILQGALDRLRHIGRS 157
>gi|327192100|gb|EGE59078.1| holliday junction resolvase protein [Rhizobium etli CNPAF512]
Length = 164
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAKEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3]
gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K T+ A LL
Sbjct: 1 MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E ++AFIIGLP+NM+GS GPR +TRAFV M ++ +PF+FWDERL+TV+A++
Sbjct: 61 AFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTMGEKTA-LPFIFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+L++M+VSR KR +++DS AA+ ILQ LDR+S L + G
Sbjct: 120 VLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG 159
>gi|222085624|ref|YP_002544154.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
gi|254767490|sp|B9JDM7|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase
gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
Length = 164
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 91/155 (58%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IEDL L P Q IA +DLGTK IGLA+SD GRRFA PRP + R K TQ A LL
Sbjct: 1 MTTLTIEDLAVMLLPGQAIAGLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPRV +TRAFV +M D+ +PFV+WDERL+TV+A++
Sbjct: 61 AFAEKEKVAAFVIGLPMNMDGSTGPRVQATRAFVRSMADKTA-LPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++M+VSR KR +++DS AA+ ILQ LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154
>gi|118590189|ref|ZP_01547592.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
gi|118437161|gb|EAV43799.1| Putative Holliday junction resolvase [Stappia aggregata IAM 12614]
Length = 162
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L +ED V ++ + +DLGTK IGLA+SD G A P + RKK T A +LL+
Sbjct: 7 LSLEDFVAAVPARTRLIGLDLGTKTIGLALSDLGLGIASPMETIRRKKFTLDAEQLLTIC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ + ++GLPLNM+GSEGPR +TRAFV + +K +P +WDERL+T + + L+
Sbjct: 67 AKQGVGGIVLGLPLNMDGSEGPRAQATRAFVR-NLSQKTDLPITYWDERLSTAAVTRTLL 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + SR KR VD +AAA ILQ LDR+ F+ G
Sbjct: 126 EADTSRAKRADVVDKMAAAYILQGFLDRLGFMGLDNG 162
>gi|254504549|ref|ZP_05116700.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
gi|222440620|gb|EEE47299.1| conserved hypothetical protein TIGR00250 [Labrenzia alexandrii
DFL-11]
Length = 161
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
L +ED + ++ + +DLGTK IGLA+SD GR A P + RKK T A +LL
Sbjct: 5 PTLSLEDFIAAVPDRTRLIGLDLGTKTIGLALSDLGRGIASPMETIRRKKFTLDAEQLLK 64
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ + ++GLPLNM+G+EGPRV +TRAF + K +P FWDERL+T + +
Sbjct: 65 ICNEQGVGGLVLGLPLNMDGTEGPRVQATRAFTR-NLAPKTDLPMTFWDERLSTAAVTRT 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++ + SR KR + VD +AAA ILQ LDR+ F+
Sbjct: 124 LLEADSSRAKRAEVVDKMAAAYILQGFLDRLGFM 157
>gi|254512444|ref|ZP_05124511.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
gi|221536155|gb|EEE39143.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium KLH11]
Length = 154
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + ED +L P + +DLG K IG+A+SD R A P + RKK T + L+
Sbjct: 1 MIHDVFEDFAAALPPMSALMGLDLGEKTIGVAVSDRMRGVATPLETVRRKKFTLDSARLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+T I ++GLP NM+GSEGPR STRAF + R V FWDERL+TV+A++
Sbjct: 61 EIVTDREIGGIVLGLPRNMDGSEGPRCQSTRAFAR-NLTRLTEVQIGFWDERLSTVAAEK 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++ + +RK+R Q +D +AA ILQ LDR+ FL
Sbjct: 120 ALLEADTTRKRRGQVIDHVAAGYILQGALDRLRFL 154
>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4]
gi|254767491|sp|B9JVI8|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase
gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4]
Length = 158
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 88/158 (55%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IE+L +SL+P Q +A +DLGTK IGLA+SD GRRFA PR + R K T+ A LL
Sbjct: 1 MATLEIEELAQSLQPGQAVAGLDLGTKTIGLAMSDLGRRFASPRTVIKRTKFTKDAEVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPRV +TRAFV M ++ +PFV+WDERL+TV+A +
Sbjct: 61 AFAAKEKVAAFVIGLPINMDGSSGPRVQATRAFVRAMAEK-TDIPFVYWDERLSTVAATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++M+VSR KR +++DS AA+ ILQ LDR+S L S+
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSGLAST 157
>gi|118597211|sp|Q28QB4|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase
Length = 160
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +++ ++ P + + +DLGTK IG+A+SD A + RKK A L
Sbjct: 1 MIFETLDEFAGAVPPMRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV--FWDERLTTVSA 118
I + I+GLP NM+GSEGPR +TRAF N+ R + FWDERL+TV+A
Sbjct: 61 GLIAKHEVGGIILGLPRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAA 120
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
++ LI + SRK+R + +D++AA+ ILQ LDR+ L +
Sbjct: 121 ERALIAADTSRKRRSEVIDAVAASYILQGALDRLRHLRA 159
>gi|319783699|ref|YP_004143175.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169587|gb|ADV13125.1| Holliday junction resolvase YqgF [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 168
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 81/159 (50%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ IE+L L + +A +DLG K IG+A+SD FAHPRP ++R+K + A LL
Sbjct: 1 MGIITIEELPARLAGGKTLAGLDLGDKTIGVAVSDQRFSFAHPRPVIMRRKFSLDAAVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFV WDERL+TV+A++
Sbjct: 61 ALLQKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNM-AQMSDLPFVLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI+M+ SR+KR K+DS AAA ILQ VLDR+ L +S
Sbjct: 120 TLIEMDFSRRKRAGKIDSAAAAFILQGVLDRLQSLHASA 158
>gi|209549118|ref|YP_002281035.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226731643|sp|B5ZMI7|RUVX_RHILW RecName: Full=Putative Holliday junction resolvase
gi|209534874|gb|ACI54809.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 163
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+
Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F T E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFATAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|163734012|ref|ZP_02141453.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
gi|161392548|gb|EDQ16876.1| hypothetical protein RLO149_03699 [Roseobacter litoralis Och 149]
Length = 163
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + D + +L P + + +DLGT+ IG+A+SD A P + R+K T A L+
Sbjct: 1 MILEDTADFLAALAPMRSLMGLDLGTQTIGVAVSDTFLSVATPLETIKRRKFTLDAARLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQ 119
+ + ++GLP NM+GSEGPR STRAF N+ +P FWDERL+TV+A+
Sbjct: 61 EIASERRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLEKTIGSDLPITFWDERLSTVAAE 120
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
+ L++ + SRK+R + +D +AA ILQ LDRI + + +
Sbjct: 121 RALLEADTSRKRRAEVIDHVAAGYILQGALDRIRVIRAEQ 160
>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 164
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K T A LL
Sbjct: 1 MTVLTIEEMAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|85707211|ref|ZP_01038297.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
gi|85668265|gb|EAQ23140.1| hypothetical protein ROS217_23800 [Roseovarius sp. 217]
Length = 160
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +L + I +DLGTK IG+A+SD A P + R K T+ A L
Sbjct: 1 MIFEEIAGFAGALPRGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTEDAARLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+T ++ I+GLP NM+GSEGPR STRAF + R P +WDERL+TV+A++
Sbjct: 61 DIMTGRDVGGIILGLPRNMDGSEGPRAQSTRAFAR-NLSRLTDAPIGYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + +RK+R+Q +D+IAAA ILQ VLDR+S + +
Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMSHMRA 156
>gi|260459185|ref|ZP_05807440.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
gi|259034739|gb|EEW35995.1| Holliday junction resolvase YqgF [Mesorhizobium opportunistum
WSM2075]
Length = 168
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE L L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL
Sbjct: 1 MAVITIEQLPARLADGRTLAGLDLGDKTIGVAVSDRGFSFAHPRPVIIRRKFSLDAAVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + EN A +IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++
Sbjct: 61 ALLKKENAGAVVIGLPINMDGSEGPRAQKSRAFVRNM-AQLSDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI+M+ SR KR K+DS AAA ILQ VLDR+ L +S
Sbjct: 120 TLIEMDFSRAKRAGKIDSAAAAFILQGVLDRLQSLAAS 157
>gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. viciae 3841]
gi|146325598|sp|Q1MHJ8|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase
gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 164
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 87/160 (54%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ ++L P Q IA +DLGTK IGL++SD GRRFA PR + R K A LL
Sbjct: 1 MTVLTIEEMAETLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFAIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F +E +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAQSEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR +++DS AA+ ILQ LDR+S L S G
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDG 159
>gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
Length = 160
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I +L + I +DLGTK IG+A+SD A P + R K T A LL
Sbjct: 1 MILEEIAAFAAALPQGRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + I+GLP NM+GSEGPR STRAF + R VP +WDERL+TV+A++
Sbjct: 61 QIVAGREVGGIILGLPRNMDGSEGPRAQSTRAFAR-NLSRLTEVPIGYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++ + +RK+R+Q +D+IAAA ILQ VLDR+ + +
Sbjct: 120 ALLEADATRKRRMQVIDNIAAAYILQGVLDRMGHMRA 156
>gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Magnetospirillum magnetotacticum MS-1]
Length = 159
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K T+ A +LL
Sbjct: 5 MPILSPVELLGSLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLL 64
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +++ ++GLP+ M+G EGPR S R+F + R +P +WDERL+T + +
Sbjct: 65 AIVDKQDVGGLVLGLPVEMDGFEGPRCQSVRSFAA-NLARLRDMPIAYWDERLSTSAVTR 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L++ + SRK+R + VD +AAA ILQ +LD S
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156
>gi|15888641|ref|NP_354322.1| hypothetical protein Atu1316 [Agrobacterium tumefaciens str. C58]
gi|32130043|sp|Q8UFT1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase
gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 159
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 86/155 (55%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L IE+L ++L+P Q IA +DLGTK IGLA+SD RRFA PRP + R K TQ A LL
Sbjct: 1 MATLTIEELAQTLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+F E +AAF+IGLP+NM+GS GPR +TRAFV M ++ +PF++WDERL+TV+A++
Sbjct: 61 AFAEKEKVAAFVIGLPINMDGSAGPRAQATRAFVRTMGEKTA-LPFIYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L++M+VSR KR +++DS AA+ ILQ LDR+S L
Sbjct: 120 ALLEMDVSRAKRAERIDSAAASFILQGALDRLSAL 154
>gi|312115158|ref|YP_004012754.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
gi|311220287|gb|ADP71655.1| Holliday junction resolvase YqgF [Rhodomicrobium vannielii ATCC
17100]
Length = 156
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 103/156 (66%), Gaps = 3/156 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M ++ + DL+ LK ++ + +D+GTK +GLA+SD R+ A P + R K T A++
Sbjct: 1 MPSELVPLPDLISRLKRDERLMGLDVGTKTVGLALSDVMRQIATPFDTIRRTKFTADAVK 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ + + ++GLP+N++G+EGPR STRAFV + +P FWDERL+T +A
Sbjct: 61 LLAHCKAQGVGGLVVGLPVNLDGTEGPRAQSTRAFVR-SLGALTDMPMAFWDERLSTAAA 119
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+++L++ + SRK+R + +D +AAA ILQ LDR+++
Sbjct: 120 ERVLLEADASRKRRAEVIDKMAAAYILQGALDRVNY 155
>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
gi|146325578|sp|Q2RHZ7|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
Length = 140
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+GTK IG+A+SDP A + R+ + L + + ++GLP
Sbjct: 1 MRIMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNGS GP+ + RAF + + +V +P F+DERLTTV+A ++L++ ++SR++R Q +
Sbjct: 61 RNMNGSLGPQAEAVRAFARH-LQAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA ILQ LDR+
Sbjct: 120 DQVAATYILQGYLDRL 135
>gi|118597214|sp|Q2W6Y3|RUVX_MAGMM RecName: Full=Putative Holliday junction resolvase
Length = 155
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL
Sbjct: 1 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLP+ M+G EGPR S R+F + R +P +WDERL+T + +
Sbjct: 61 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAA-NLARLRDMPIAYWDERLSTSAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L++ + SRK+R + VD +AAA ILQ +LD S
Sbjct: 120 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 152
>gi|114707193|ref|ZP_01440091.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
gi|114537389|gb|EAU40515.1| hypothetical protein FP2506_04781 [Fulvimarina pelagi HTCC2506]
Length = 165
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS++ IE+ ++LK +P+A +DLGTK IG+A+SD RFA+PR L RKK TQ A L
Sbjct: 1 MSVVEIEEFAETLKLGKPLAGLDLGTKTIGVAVSDRSFRFANPRSVLKRKKFTQDAQALK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + ++A ++GLPLNM+GS GPR +T+AF N P + WDERL+TV+A++
Sbjct: 61 AMLDADEVSAIVLGLPLNMDGSSGPRAQATKAFSRNY-AALDERPILLWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L+D+++SRKKR +++DS AAA+ILQ VLDR++ L G
Sbjct: 120 NLLDIDMSRKKRGERIDSAAAAIILQGVLDRLANLTRCPG 159
>gi|144897944|emb|CAM74808.1| Holliday junction resolvase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 163
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL I +L +L + + +DLGTK IGLA+SD A P + R K T+ A L
Sbjct: 1 MPILPIAELKTALPRHARLMGLDLGTKTIGLALSDVRLSIASPFDTIRRTKFTKDAEALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP+ M+G+EG R STRAF N++ +P VFWDERL+T + +
Sbjct: 61 AALDKHEAAGIVLGLPVEMDGTEGARCQSTRAFARNLLG-LRDLPIVFWDERLSTAAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L++ + SR +R + VD +AAA ILQ LD +
Sbjct: 120 TLLEADSSRARRAEVVDKMAAAYILQGALDFL 151
>gi|83310687|ref|YP_420951.1| putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
gi|82945528|dbj|BAE50392.1| Putative Holliday junction resolvase [Magnetospirillum magneticum
AMB-1]
Length = 159
Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IL +L+ SL +Q + +DLG+K IGLA+SD R A P + R K TQ A LL
Sbjct: 5 MPILAPAELLASLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTQDAELLL 64
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLP+ M+G EGPR S R+F + R +P +WDERL+T + +
Sbjct: 65 AVVDKQGVGGLVLGLPVEMDGFEGPRCQSVRSFAA-NLARLRDMPIAYWDERLSTSAVTR 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L++ + SRK+R + VD +AAA ILQ +LD S
Sbjct: 124 TLLEADSSRKRRAEVVDKMAAAYILQGLLDNRS 156
>gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
gi|62900974|sp|Q6FZS7|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase
gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
Length = 159
Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +++ L P Q IA +DLG K IG+A+SD G F++PR L RKK+T A L+
Sbjct: 1 MAVININEVITHLLPGQTIAGLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS GPR +TR FV+NM + +PFVFWDERL+T++A++
Sbjct: 61 QIFDRENVGVVIIGLPLNMNGSSGPRAQATRTFVNNM-EAYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ L+RI L +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIQNLHYMEG 159
>gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
Length = 165
Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
L +ED +L + + IDLGTK IGLA++D GR+ A P + RKK TQ LL
Sbjct: 7 LSLEDFCDALYDDDRLIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLDLC 66
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
+ +IGLPLNM+G+EGPR +TRAFV + +K +P +WDERL+T + + LI
Sbjct: 67 HEHGVFGLVIGLPLNMDGTEGPRCQATRAFVR-NLAQKTEIPITYWDERLSTAAVTRTLI 125
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + SR +R + VD +AA ILQ LDR+++
Sbjct: 126 EADRSRARRAELVDKMAATYILQGFLDRVNY 156
>gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
gi|62900975|sp|Q6G3F1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase
gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
Length = 159
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I +++ L P Q IA +DLGTK IG+A+SD G F++PR L R+K T A L+
Sbjct: 1 MAIININEVMIHLLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS GPR +TR FV NM + +PFVFWDERL+T++A++
Sbjct: 61 KIFDHENVGVIIIGLPLNMNGSSGPRAQATRTFVRNM-EAYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ L+RI L +G
Sbjct: 120 SLLEMDVSRAKRATRIDSAAAAFILQGALNRIHNLHHIEG 159
>gi|262277133|ref|ZP_06054926.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
gi|262224236|gb|EEY74695.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
Length = 156
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
+++ +D + + N I ID G K IGL++SDP ++ A P +V KK Q EL
Sbjct: 4 INLCDNKDFLIKVGKNSRILGIDPGKKNIGLSVSDPNQKIATPFKIIVMKKFKQFLEELN 63
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I I +IG P+NM+G+ GPR S R F I + +P WDERL++ A
Sbjct: 64 NIIREYEIKGIVIGNPINMDGTSGPRSQSARDFAQ-NISKNTKLPITLWDERLSSEGAFN 122
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
++ D++++ K+ + +D AAA ILQ LD ++
Sbjct: 123 LMGDLDINSSKKSKNLDQHAAAFILQGYLDFLN 155
>gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
Length = 135
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ID+G K IG+A+SDP A + RK + EL + + GLP
Sbjct: 1 MRILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + V
Sbjct: 61 KNMNGTIGFQSEKVLGFCE-VIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLV 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA ILQ LD I
Sbjct: 120 DKVAATYILQGYLDSI 135
>gi|167645483|ref|YP_001683146.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
gi|189046089|sp|B0T191|RUVX_CAUSK RecName: Full=Putative Holliday junction resolvase
gi|167347913|gb|ABZ70648.1| Holliday junction resolvase YqgF [Caulobacter sp. K31]
Length = 164
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L I + ++ PI +D G K IG+A+SD A P + + K ++ A L
Sbjct: 1 MPVLDIAEFAAAIPDYLPIVGLDPGEKTIGVAVSDVTLTVASPLALIKKTKFSEDAATLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A +IGLP+NM+G+EG R S RA N++ + ++P FWDERL+T + +
Sbjct: 61 QLMGSRKAAGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLQPHIPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+LI + +V+RK+R + VD +AAA ILQ L+R+ + + G
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAAWILQGALERMRGIAEAAG 161
>gi|114771780|ref|ZP_01449173.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
gi|114547596|gb|EAU50487.1| hypothetical protein OM2255_12592 [alpha proteobacterium HTCC2255]
Length = 156
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ L + + +DLGTK IG+A+SD A PR + RKK L + + +
Sbjct: 9 EFASELTKFKSLIGLDLGTKTIGIAVSDTLWTVATPRETIKRKKFGIDCDALQTVFNSTD 68
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP+NM+GSEGPR +TRAF + + +P FWDERL++V+A++ +++ ++
Sbjct: 69 TGGIILGLPMNMDGSEGPRCQATRAFAR-NLSSRCDIPITFWDERLSSVAAERAMLEADM 127
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFL 155
SR KR +D +AA+ ILQ LDRI +
Sbjct: 128 SRAKRADNIDHVAASFILQGALDRIGNI 155
>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
gi|254767518|sp|B8D2B0|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
Length = 140
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D G +RIG+AISD A + ++RK + + I + I+G+P
Sbjct: 1 MRIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+GS GPR TR F+ + + + P WDERL+TV A+++LI+ +VSRKKR +
Sbjct: 61 KNMDGSLGPRAEKTRDFIDF-LQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVI 119
Query: 137 DSIAAALILQEVLDRISFL 155
D +AA++ILQ L+ + L
Sbjct: 120 DKVAASIILQGYLNYQNKL 138
>gi|239833964|ref|ZP_04682292.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|239822027|gb|EEQ93596.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
Length = 165
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE++ L+P + IA +DLGTK IGLA+SD G FAHPRP + R K + A LL
Sbjct: 1 MAVVEIEEIPALLQPGKTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR +++DS AAA ILQ LDR+ + S
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHSIRRS 157
>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum ATCC 824]
gi|32130056|sp|Q97IG1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
acetobutylicum ATCC 824]
Length = 135
Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ID+G K IG+A+SDP A + RK + EL + + GLP
Sbjct: 1 MRILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + F +I + + VP WDERLTTV+A + +++ ++SRKKR + V
Sbjct: 61 KNMNGTIGFQSEKVLGFCE-VIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLV 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA ILQ L+ I
Sbjct: 120 DKVAATYILQGYLNSI 135
>gi|295690146|ref|YP_003593839.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
gi|295432049|gb|ADG11221.1| Holliday junction resolvase YqgF [Caulobacter segnis ATCC 21756]
Length = 156
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L IED +L P+ +D G K IG+A+SD R A P + + K ++ A L
Sbjct: 1 MPVLDIEDFAAALPQYAPVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + +
Sbjct: 61 KLMDSRGAVGIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI + +V+RK+R + VD +AA ILQ L+R+ L
Sbjct: 121 VLIEEHDVNRKRRAEVVDKMAAGWILQGALERLRGL 156
>gi|115525369|ref|YP_782280.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisA53]
gi|122295574|sp|Q07L84|RUVX_RHOP5 RecName: Full=Putative Holliday junction resolvase
gi|115519316|gb|ABJ07300.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisA53]
Length = 163
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + P + +DLGTK IG+A+SDP RR A ++RK T A LL+
Sbjct: 4 PILPLIEAAAQWPPTGALIGLDLGTKTIGVAVSDPARRLATGVETILRKTFTTDAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
T ++GLP+NM+ SEGPR STRAF + R +P WDERL+T + ++
Sbjct: 64 LATERKAVGLVLGLPINMDASEGPRAQSTRAFAR-NLARLTELPIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI +VSR KR + +D AA ILQ LDR++ L S G
Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLAVLNRSTG 161
>gi|159043613|ref|YP_001532407.1| Holliday junction resolvase-like protein [Dinoroseobacter shibae
DFL 12]
gi|157911373|gb|ABV92806.1| holliday junction resolvase YqgF [Dinoroseobacter shibae DFL 12]
Length = 163
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + + + + +DLGT IG+A+SD A P + RKK A L
Sbjct: 3 MIFDDLAAFRAVVPAGRALMGLDLGTATIGVAVSDLMWSVATPLETVKRKKFGLDAARLE 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++ I+GLP NM+GSEGPR STRAF N R +P FWDERL+TV+A++
Sbjct: 63 ALMDARDVGGLILGLPRNMDGSEGPRAQSTRAFARNFTAR-RPIPIAFWDERLSTVAAER 121
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L++ + SR +R + +D +AA+ ILQ LDR +
Sbjct: 122 ALLEADTSRARRAEVIDHVAASYILQGALDRFGHMRREA 160
>gi|158424464|ref|YP_001525756.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
gi|158331353|dbj|BAF88838.1| holliday junction resolvase [Azorhizobium caulinodans ORS 571]
Length = 185
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
+ ++ +L + +DLGTK IG+A DP RR A + R K TQ A L+ +
Sbjct: 35 LAEIAAALPERGSLLGLDLGTKTIGVATCDPDRRLATVVETVKRTKFTQDAERLMVLASE 94
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
AF++GLPLNM+GSEGPRV ++RAF N R +P FWDERL+TV+ ++ LI
Sbjct: 95 RKAVAFVLGLPLNMDGSEGPRVQASRAFARNF-ARLSGLPIAFWDERLSTVAVERALISA 153
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
+VSR KR +D AAA ILQ +D ++
Sbjct: 154 DVSRAKRANVIDQHAAAFILQGAIDFLN 181
>gi|306841755|ref|ZP_07474441.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306288160|gb|EFM59547.1| conserved hypothetical protein [Brucella sp. BO2]
Length = 162
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR +++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157
>gi|319407285|emb|CBI80926.1| putative resolvase [Bartonella sp. 1-1C]
Length = 163
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MTIISINEVKTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++
Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNM-ATYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+L++M++SR KR ++DS AAA ILQ LDRI L+S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157
>gi|163868299|ref|YP_001609508.1| putative resolvase [Bartonella tribocorum CIP 105476]
gi|189046086|sp|A9IU51|RUVX_BART1 RecName: Full=Putative Holliday junction resolvase
gi|161017955|emb|CAK01513.1| putative resolvase [Bartonella tribocorum CIP 105476]
Length = 156
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 83/157 (52%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+
Sbjct: 1 MTVININEIMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAHRLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ +IGLPLNMNGS G RV +TRAFV NM +PFVFWDERL+T++A++
Sbjct: 61 KIFDHENVGVIVIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
L++MNVSR KR +++DS AAA ILQ L+RI L S
Sbjct: 120 SLLEMNVSRIKRARRIDSAAAAFILQGALNRIENLHS 156
>gi|254720416|ref|ZP_05182227.1| Holliday junction resolvase-like protein [Brucella sp. 83/13]
gi|265985435|ref|ZP_06098170.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839007|ref|ZP_07471828.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264664027|gb|EEZ34288.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405913|gb|EFM62171.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 162
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR +++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRAERIDSAAAAFILQGALDRLHMMRRN 157
>gi|240850656|ref|YP_002972056.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
gi|240267779|gb|ACS51367.1| putative Holliday junction resolvase [Bartonella grahamii as4aup]
Length = 159
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 83/160 (51%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ I +++ L P Q IA +DLGTK IG+AISD G ++PRP L RKK T+ A L+
Sbjct: 1 MIVININEVMTHLLPGQTIAGLDLGTKTIGIAISDMGLTVSNPRPVLQRKKFTEDAYTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLPLNMNGS G RV +TRAFV NM +PFVFWDERL+T++A++
Sbjct: 61 KIFDRENVGVIIIGLPLNMNGSSGSRVQATRAFVSNM-KAYTKIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++MNVSR KR ++DS AAA ILQ L+RI +G
Sbjct: 120 SLLEMNVSRAKRASRIDSAAAAFILQGALNRIQNFHHMEG 159
>gi|209884927|ref|YP_002288784.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
gi|209873123|gb|ACI92919.1| holliday junction resolvase YqgF [Oligotropha carboxidovorans OM5]
Length = 204
Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + D P + +DLGTK IG+A+SDP RR A + RK T+ A ELL
Sbjct: 46 PILPLIDAAALWAPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKNFTKDAAELLK 105
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
A F++GLP+NM+GSEGPR STRAF N + + WDERL+T + ++
Sbjct: 106 ISGERACAGFVLGLPINMDGSEGPRAQSTRAFARNF-AKLTELAIGLWDERLSTAAVERE 164
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L+ +VSR +R + +D AA ILQ LDR++ L
Sbjct: 165 LLANDVSRARRAEVIDEHAAIFILQGALDRLTALRRQA 202
>gi|23500341|ref|NP_699781.1| Holliday junction resolvase-like protein [Brucella suis 1330]
gi|161620659|ref|YP_001594545.1| hypothetical protein BCAN_B0598 [Brucella canis ATCC 23365]
gi|163844749|ref|YP_001622404.1| hypothetical protein BSUIS_B0594 [Brucella suis ATCC 23445]
gi|225629090|ref|ZP_03787123.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225686383|ref|YP_002734355.1| Holliday junction resolvase-like protein [Brucella melitensis ATCC
23457]
gi|254699833|ref|ZP_05161661.1| Holliday junction resolvase-like protein [Brucella suis bv. 5 str.
513]
gi|254702971|ref|ZP_05164799.1| Holliday junction resolvase-like protein [Brucella suis bv. 3 str.
686]
gi|254705907|ref|ZP_05167735.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
M163/99/10]
gi|254711134|ref|ZP_05172945.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
B2/94]
gi|256015374|ref|YP_003105383.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
gi|256029515|ref|ZP_05443129.1| Holliday junction resolvase-like protein [Brucella pinnipedialis
M292/94/1]
gi|256059210|ref|ZP_05449416.1| Holliday junction resolvase-like protein [Brucella neotomae 5K33]
gi|256111486|ref|ZP_05452500.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 3
str. Ether]
gi|256157710|ref|ZP_05455628.1| Holliday junction resolvase-like protein [Brucella ceti M490/95/1]
gi|256253318|ref|ZP_05458854.1| Holliday junction resolvase-like protein [Brucella ceti B1/94]
gi|256262476|ref|ZP_05465008.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|260167394|ref|ZP_05754205.1| Holliday junction resolvase-like protein [Brucella sp. F5/99]
gi|260568115|ref|ZP_05838584.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|261220434|ref|ZP_05934715.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313336|ref|ZP_05952533.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318725|ref|ZP_05957922.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261323159|ref|ZP_05962356.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261750307|ref|ZP_05994016.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261753580|ref|ZP_05997289.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756804|ref|ZP_06000513.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|265986523|ref|ZP_06099080.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265992983|ref|ZP_06105540.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996215|ref|ZP_06108772.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|306845931|ref|ZP_07478498.1| conserved hypothetical protein [Brucella sp. BO1]
gi|32130035|sp|Q8FW65|RUVX_BRUSU RecName: Full=Putative Holliday junction resolvase
gi|189046087|sp|A9MBN7|RUVX_BRUC2 RecName: Full=Putative Holliday junction resolvase
gi|189046088|sp|A9WYR6|RUVX_BRUSI RecName: Full=Putative Holliday junction resolvase
gi|254767499|sp|C0RLB8|RUVX_BRUMB RecName: Full=Putative Holliday junction resolvase
gi|23463956|gb|AAN33786.1| conserved hypothetical protein TIGR00250 [Brucella suis 1330]
gi|161337470|gb|ABX63774.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163675472|gb|ABY39582.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|225615586|gb|EEH12635.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|225642488|gb|ACO02401.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|255998034|gb|ACU49721.1| putative Holliday junction resolvase [Brucella microti CCM 4915]
gi|260154780|gb|EEW89861.1| ribonuclease RNase H fold containing protein [Brucella suis bv. 4
str. 40]
gi|260919018|gb|EEX85671.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261297948|gb|EEY01445.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299139|gb|EEY02636.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302362|gb|EEY05859.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261736788|gb|EEY24784.1| ribonuclease RNase H fold containing protein [Brucella sp. F5/99]
gi|261740060|gb|EEY27986.1| holliday junction resolvase YqgF [Brucella suis bv. 5 str. 513]
gi|261743333|gb|EEY31259.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262550512|gb|EEZ06673.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262763853|gb|EEZ09885.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263092212|gb|EEZ16509.1| ribonuclease RNase H [Brucella melitensis bv. 2 str. 63/9]
gi|264658720|gb|EEZ28981.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|306273566|gb|EFM55411.1| conserved hypothetical protein [Brucella sp. BO1]
gi|326410755|gb|ADZ67819.1| Holliday junction resolvase-like protein [Brucella melitensis M28]
gi|326554047|gb|ADZ88686.1| Holliday junction resolvase-like protein [Brucella melitensis
M5-90]
Length = 162
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|288958770|ref|YP_003449111.1| holliday junction resolvase [Azospirillum sp. B510]
gi|288911078|dbj|BAI72567.1| holliday junction resolvase [Azospirillum sp. B510]
Length = 178
Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
I +EDL L NQ + +D+GTK +GLA++DPG A P L R K TQ A EL
Sbjct: 2 IHTLEDLAARLGRNQRLLGLDVGTKTVGLAVADPGLIVASPIGTLKRTKFTQDARELGKT 61
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK----VYVPFVFWDERLTTVSA 118
I I ++GLPLNM+GSEGPR S RAF +N+++R FWDERL+T +
Sbjct: 62 IRDYGIGGLVVGLPLNMDGSEGPRAESVRAFANNLLERSDLLGWEAEIAFWDERLSTSAV 121
Query: 119 QQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
++ +I + +++RK+R + VD +AAA ILQ LD ++
Sbjct: 122 ERFMIGEADMTRKRRDEVVDKMAAAYILQGALDMLANQRRLA 163
>gi|254712407|ref|ZP_05174218.1| Holliday junction resolvase-like protein [Brucella ceti M644/93/1]
gi|254715479|ref|ZP_05177290.1| Holliday junction resolvase-like protein [Brucella ceti M13/05/1]
gi|261217214|ref|ZP_05931495.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261320085|ref|ZP_05959282.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260922303|gb|EEX88871.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292775|gb|EEX96271.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 162
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FA+PRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAYPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|126725473|ref|ZP_01741315.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
gi|126704677|gb|EBA03768.1| hypothetical protein RB2150_04693 [Rhodobacterales bacterium
HTCC2150]
Length = 156
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MSIL-LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
M+I+ + SLK PI ++D G K IG+A SD R A P + R K T A L
Sbjct: 1 MAIIEDFVEFGSSLKEMSPIFALDFGDKTIGIATSDIFRNIATPLETIRRTKFTADAERL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
L + F++GLP NM+GSEG R TRAF ++R + FWDERL+TV+A+
Sbjct: 61 LELAKQRQVTGFVLGLPRNMDGSEGVRCQKTRAFAR-NLERLTEINIAFWDERLSTVAAE 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ LI+ + SR KR Q +D +AA ILQ LDR++ L
Sbjct: 120 RALIEADTSRAKRAQIIDHVAAGYILQGALDRLAHL 155
>gi|319898952|ref|YP_004159045.1| resolvase [Bartonella clarridgeiae 73]
gi|319402916|emb|CBI76467.1| putative resolvase [Bartonella clarridgeiae 73]
Length = 164
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIININEVTTHLLLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIHRKKFTLDALTLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A +IGLP+NM+GS GPRV +T+ FV NM +PFVFWDERL+T +A++
Sbjct: 61 KVFNNENVGAIVIGLPINMDGSNGPRVQATKTFVSNM-AMYTKIPFVFWDERLSTTAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L+++++SR KR ++DS AAA ILQ LDRI L S+
Sbjct: 120 YLLEIDMSRSKRKSRIDSAAAAFILQGALDRIQTLPSN 157
>gi|238926881|ref|ZP_04658641.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
flueggei ATCC 43531]
gi|238885413|gb|EEQ49051.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
flueggei ATCC 43531]
Length = 143
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 72/143 (50%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ S+DLG IG+A+SD A + R + L + + A + GL
Sbjct: 1 MKRYMSLDLGDATIGIAVSDLLGLTAQGVETVRRTNIEADLAHLGQLMQEYEVDALVAGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR +
Sbjct: 61 PKHMNGDEGERCSIVRAFMAEVEEHFPGTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120
Query: 136 VDSIAAALILQEVLDRISFLESS 158
+D +AA ILQ LDR +
Sbjct: 121 IDKMAAVYILQGFLDRQNMGNHG 143
>gi|319404280|emb|CBI77873.1| putative resolvase [Bartonella rochalimae ATCC BAA-1498]
Length = 163
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I +++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIISINEVMTHLSLGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A IIGLPLNMNGS GPRV +T+ FV NM +PFVFWDERL+T++A++
Sbjct: 61 QIFNNENVGAIIIGLPLNMNGSNGPRVQATKTFVSNM-ATYTEIPFVFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+L++M++SR KR ++DS AAA ILQ LDRI L S+
Sbjct: 120 LLLEMDMSRSKRKSRIDSAAAAFILQGALDRIKTLPSN 157
>gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
Length = 138
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+A+SDP A + RK EL + N+ + GLP
Sbjct: 1 MRILGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F +I K+ +P WDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTLGPQSEKVLKFCE-VIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIV 119
Query: 137 DSIAAALILQEVLDRISF 154
D +AA ILQ LD IS
Sbjct: 120 DKMAAIYILQGYLDSISN 137
>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
100599]
Length = 138
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G K IG+A+SD A + R+ + L ++ I AF++GL
Sbjct: 1 MTRLMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR +AF +++ + +P WDERLTT++A+++LI +VSR+KR
Sbjct: 61 PKNMNGTIGPRAEMCQAFGK-LLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTV 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA LILQ LD S
Sbjct: 120 IDKMAATLILQGYLDAKS 137
>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
743B]
gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
Length = 135
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+G K IG+A+SDP A + RK + ++++ + ++GLP
Sbjct: 1 MRVLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ AFV + + + WDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTLGPQSEKVMAFVE-KLKKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIV 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA ILQ LD I
Sbjct: 120 DKVAATYILQGYLDSI 135
>gi|154253281|ref|YP_001414105.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
gi|154157231|gb|ABS64448.1| Holliday junction resolvase YqgF [Parvibaculum lavamentivorans
DS-1]
Length = 182
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
++ + +L L N+ + +DLG+K IGLA+SD A P + R K T A L++
Sbjct: 30 NLKPLAELKVGLGRNRRLIGVDLGSKTIGLALSDVSLSIASPLETIRRTKFTADAERLIA 89
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ A + GLPLNM+G+EGPR STRAF+ +++ +P FWDERL+T++ +
Sbjct: 90 LAKEHDAGALVFGLPLNMDGTEGPRCQSTRAFIR-NLEKLTDLPIAFWDERLSTMAVTRT 148
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L+D + SR +R + VD +AAA ILQ LDR+ L
Sbjct: 149 LLDADASRARRAELVDKMAAAYILQGALDRLRKL 182
>gi|153010985|ref|YP_001372199.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
gi|167012742|sp|A6X566|RUVX_OCHA4 RecName: Full=Putative Holliday junction resolvase
gi|151562873|gb|ABS16370.1| Holliday junction resolvase YqgF [Ochrobactrum anthropi ATCC 49188]
Length = 165
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ IE++ L+ Q IA +DLGTK IGLA+SD G FAHPRP + R K + A LL
Sbjct: 1 MAVVEIEEIPALLQSGQTIAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFSIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALDADKVGVIVIGLPMNMDGTSGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
LI M+VSR KR ++DS AA+ ILQ LDR+ + S
Sbjct: 120 ALIGMDVSRGKRADRIDSAAASFILQGALDRLHSIRRSA 158
>gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
Length = 149
Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 73/137 (53%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + ++D+G + IG+A SD A + RK + L + FI+GL
Sbjct: 2 RKRVLALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG++G R R F + + VFWDERL+TV+A++ LI +VSR KR +
Sbjct: 62 PKNMNGTQGERCDVVRDFAQRLQKKFKGSQVVFWDERLSTVAAERSLIAADVSRAKRRKV 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 122 IDKMAAVFILQGYLDNL 138
>gi|62317546|ref|YP_223399.1| Holliday junction resolvase-like protein [Brucella abortus bv. 1
str. 9-941]
gi|83269527|ref|YP_418818.1| Holliday junction resolvase-like protein [Brucella melitensis
biovar Abortus 2308]
gi|189022801|ref|YP_001932542.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
gi|237817094|ref|ZP_04596086.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|254691043|ref|ZP_05154297.1| Holliday junction resolvase-like protein [Brucella abortus bv. 6
str. 870]
gi|254695650|ref|ZP_05157478.1| Holliday junction resolvase-like protein [Brucella abortus bv. 3
str. Tulya]
gi|254698827|ref|ZP_05160655.1| Holliday junction resolvase-like protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254732274|ref|ZP_05190852.1| Holliday junction resolvase-like protein [Brucella abortus bv. 4
str. 292]
gi|256256228|ref|ZP_05461764.1| Holliday junction resolvase-like protein [Brucella abortus bv. 9
str. C68]
gi|260544782|ref|ZP_05820603.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260756639|ref|ZP_05868987.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260760069|ref|ZP_05872417.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260763308|ref|ZP_05875640.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260882456|ref|ZP_05894070.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261216050|ref|ZP_05930331.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297249585|ref|ZP_06933286.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
gi|81309292|sp|Q577Z6|RUVX_BRUAB RecName: Full=Putative Holliday junction resolvase
gi|146325555|sp|Q2YKL6|RUVX_BRUA2 RecName: Full=Putative Holliday junction resolvase
gi|226725492|sp|B2SB59|RUVX_BRUA1 RecName: Full=Putative Holliday junction resolvase
gi|62197739|gb|AAX76038.1| conserved hypothetical protein TIGR00250 [Brucella abortus bv. 1
str. 9-941]
gi|82939801|emb|CAJ12809.1| Conserved hypothetical protein 250:Ribonuclease RNase H fold
containing [Brucella melitensis biovar Abortus 2308]
gi|189021375|gb|ACD74096.1| Ribonuclease RNase H fold containing [Brucella abortus S19]
gi|237787907|gb|EEP62123.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260098053|gb|EEW81927.1| ribonuclease RNase H fold containing protein [Brucella abortus NCTC
8038]
gi|260670387|gb|EEX57327.1| holliday junction resolvase YqgF [Brucella abortus bv. 4 str. 292]
gi|260673729|gb|EEX60550.1| holliday junction resolvase YqgF [Brucella abortus bv. 2 str.
86/8/59]
gi|260676747|gb|EEX63568.1| holliday junction resolvase YqgF [Brucella abortus bv. 6 str. 870]
gi|260871984|gb|EEX79053.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917657|gb|EEX84518.1| holliday junction resolvase YqgF [Brucella abortus bv. 3 str.
Tulya]
gi|297173454|gb|EFH32818.1| hypothetical protein BAYG_02344 [Brucella abortus bv. 5 str. B3196]
Length = 162
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIMIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|330814160|ref|YP_004358399.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487255|gb|AEA81660.1| putative Holliday junction resolvase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 156
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
++L D K + + ID G + +G+AI DP A P + KK+ EL
Sbjct: 5 NLLENSDFAKLITEGSRLLGIDPGKRNVGIAICDPSHLIATPYETIQAKKLKNLLEELDK 64
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
I NI ++G P+NM+G+EGPR ST+ FV N+I + ++P WDERL++V A +
Sbjct: 65 IIIENNIKGIVVGHPINMDGTEGPRSQSTKDFVKNII-KHTHLPVTLWDERLSSVGAFKS 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ D+ ++ + K+D +AA ILQ +D +
Sbjct: 124 MQDLGINSSSKKDKLDENSAAFILQGFIDYL 154
>gi|118442957|ref|YP_878351.1| Holliday junction resolvase-like protein [Clostridium novyi NT]
gi|167012715|sp|A0Q149|RUVX_CLONN RecName: Full=Putative Holliday junction resolvase
gi|118133413|gb|ABK60457.1| Putative Holliday junction resolvase [Clostridium novyi NT]
Length = 135
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+G + IG+A+SDP A + RK V + EL + I GLP
Sbjct: 1 MRVLGLDVGDRTIGVAVSDPLGFTAQGITTVHRKSVKEDIDELKKICKEYAVELIISGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + F ++ ++ +P WDERLTTV+A + +++ N+SR KR + V
Sbjct: 61 KNMNGTVGEQGEKVIEFCE-LLKSELKMPIKMWDERLTTVAAHRAMLEANLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA ILQ LD I
Sbjct: 120 DKMAATYILQGYLDSI 135
>gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
Length = 138
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
I +D+GTK IG+A+SDP A RKK + ++ + E ++G
Sbjct: 1 MKIIGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GP +AF + +P + WDERLTT +A++ LI +VSRKKR
Sbjct: 61 LPKNMNGTIGPSGELCQAFAE-SLKEATGLPVILWDERLTTAAAEKTLISADVSRKKRKN 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD S
Sbjct: 120 VIDKMAAVFILQGYLDSRS 138
>gi|17989017|ref|NP_541650.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
str. 16M]
gi|148558591|ref|YP_001257584.1| Holliday junction resolvase-like protein [Brucella ovis ATCC 25840]
gi|256043494|ref|ZP_05446421.1| Holliday junction resolvase-like protein [Brucella melitensis bv. 1
str. Rev.1]
gi|260564689|ref|ZP_05835174.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|265989912|ref|ZP_06102469.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|32130048|sp|Q8YC60|RUVX_BRUME RecName: Full=Putative Holliday junction resolvase
gi|167012699|sp|A5VUS9|RUVX_BRUO2 RecName: Full=Putative Holliday junction resolvase
gi|17984856|gb|AAL53914.1| DNA integration/recombination/invertion protein [Brucella
melitensis bv. 1 str. 16M]
gi|148369876|gb|ABQ62748.1| conserved hypothetical protein TIGR00250 [Brucella ovis ATCC 25840]
gi|260152332|gb|EEW87425.1| ribonuclease RNase [Brucella melitensis bv. 1 str. 16M]
gi|263000581|gb|EEZ13271.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 162
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+NM+G+ GPRV +TRAFV M +PFVFWDERL+TV+ ++
Sbjct: 61 KALETDKVGVIVIGLPMNMDGTAGPRVQATRAFVRTM-QPLTDLPFVFWDERLSTVAVER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|83594508|ref|YP_428260.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
gi|146325602|sp|Q2RPH2|RUVX_RHORT RecName: Full=Putative Holliday junction resolvase
gi|83577422|gb|ABC23973.1| Holliday junction resolvase YqgF [Rhodospirillum rubrum ATCC 11170]
Length = 161
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I ++ +L P +P+ +DLGT+ IG+A SD A P + R+K T EL
Sbjct: 1 MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ A ++GLP+ M+GSEGPR +TRAF N++ +P + WDERL+T + +
Sbjct: 61 ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLL-ALRDLPVLLWDERLSTAAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L+ + +++R +R + VD AAA ILQ LD +
Sbjct: 120 FLVGEADMTRARRAEVVDRAAAAYILQGALDAL 152
>gi|167462225|ref|ZP_02327314.1| hypothetical protein Plarl_06660 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382969|ref|ZP_08056801.1| Holliday junction resolvase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321153089|gb|EFX45547.1| Holliday junction resolvase-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 136
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D G + IG+A+SD A + RKK + + I ++ ++GLP
Sbjct: 1 MRKMGLDYGDRTIGVAVSDLLGLTAQGVEVIRRKKQEEDLARIGELIREYEVSELVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + F ++ R+ +P WDERLTTVSA + L++ +VSRKKR Q V
Sbjct: 61 KNMNGTIGPRGELCQEFAG-LLKRQFGLPVHLWDERLTTVSATRTLLEADVSRKKRKQVV 119
Query: 137 DSIAAALILQEVLDR 151
D +AAALILQ +D
Sbjct: 120 DKMAAALILQGYMDS 134
>gi|315645822|ref|ZP_07898943.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
gi|315278583|gb|EFU41897.1| Holliday junction resolvase YqgF [Paenibacillus vortex V453]
Length = 137
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D G +RIG+AISD A + R++ + + + + + ++GL
Sbjct: 1 MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELVRIATLVKENEVGEVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR F + + + +P WDERL+TVSA++ L++ +VSRKKR Q
Sbjct: 61 PKNMNGTIGPRGEICMEFAN-TLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA+LILQ LD
Sbjct: 120 VDKMAASLILQNYLDSKR 137
>gi|294084181|ref|YP_003550939.1| putative Holliday junction resolvase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663754|gb|ADE38855.1| Putative Holliday junction resolvase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 159
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + D+ +S+ Q + +D+G K IGLA+SD G + A P L R K T EL
Sbjct: 1 MPICKLNDVKQSISDGQRLLGLDIGKKTIGLALSDAGLKIATPVKILYRTKFTPDVAELF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +N+ ++G P+NM+GS GPR STR F + R VP F DERL+T + +
Sbjct: 61 KLVDEQNVGGLVLGWPVNMDGSTGPRCDSTRDFA-YALMRIRDVPVFFQDERLSTQAVES 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+I +++R KR + D++AA ILQ LD I
Sbjct: 120 AMIAADMTRAKRAVRRDALAAGWILQSALDTI 151
>gi|32130021|sp|Q89K24|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase
Length = 161
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M IL + D + +DLGTK IG+A+S+P RR A + RK Q A
Sbjct: 1 MPALILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAAR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ + F++GLP+NM+GSEGPR STRAF + +P WDERL+T +
Sbjct: 61 LLAIAAERKVVGFVLGLPINMDGSEGPRAQSTRAFAR-NLANLTTLPIGLWDERLSTAAV 119
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ LI M+VSR KR + +D AA ILQ LDR++ L + G
Sbjct: 120 ERELIGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 161
>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 138
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 56/137 (40%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D G +RIG+A+SD A + R+K + + + ++GLP
Sbjct: 1 MKIMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR AF + K+ +P WDERLTTVSAQ+ L+D +VSRKKR V
Sbjct: 61 KNMNGTIGPRGEICMAFAE-DLRAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA+LILQ LD S
Sbjct: 120 DKMAASLILQNYLDSKS 136
>gi|16126678|ref|NP_421242.1| hypothetical protein CC_2439 [Caulobacter crescentus CB15]
gi|221235457|ref|YP_002517894.1| endonuclease involved in recombination [Caulobacter crescentus
NA1000]
gi|32130061|sp|Q9A5K8|RUVX_CAUCR RecName: Full=Putative Holliday junction resolvase
gi|254767503|sp|B8GZJ7|RUVX_CAUCN RecName: Full=Putative Holliday junction resolvase
gi|13423984|gb|AAK24410.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220964630|gb|ACL95986.1| endonuclease involved in recombination [Caulobacter crescentus
NA1000]
Length = 156
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L IED +L + +D G K IG+A+SD R A P + + K ++ A +L
Sbjct: 1 MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A +IGLP+NM+G+EG R S RA N++ K +P FWDERL+T + +
Sbjct: 61 KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+LI + ++SRK+R + VD +AA ILQ L+R+ L
Sbjct: 121 VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL 156
>gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
Length = 162
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ +D GTKR+G+AIS + A P R+ + Q LLS IT
Sbjct: 11 FEAEFPAEGRLLGLDYGTKRVGIAISTFEQNIASPLDNYNRQSLPQDQKHLLSIITEYRC 70
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP++M+G EG + R F + + + +P +WDER ++ +A++IL+++N+S
Sbjct: 71 KGLVVGLPVHMSGDEGQKAKEARQFGNWV-SQFAEIPVRYWDERYSSATAEEILVNLNMS 129
Query: 129 RKKRIQKVDSIAAALILQEVLDRIS 153
R KR +D +AA +ILQ LD +
Sbjct: 130 RNKRKAYLDKLAAQIILQSFLDSPN 154
>gi|303229331|ref|ZP_07316121.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
gi|302515867|gb|EFL57819.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-134-V-Col7a]
Length = 140
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 1/141 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G++ IG+A SD A + R + L I+ + ++G+P
Sbjct: 1 MRIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG++G R T FV M + +P FWDERL+TV A++ LI +VSRKKR +
Sbjct: 61 KNMNGTKGERAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVI 119
Query: 137 DSIAAALILQEVLDRISFLES 157
D +AA +ILQ LDR+ F +S
Sbjct: 120 DKMAAVVILQGYLDRLQFSKS 140
>gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 151
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ IEDL K + +DLG+KRIG++I D + A P + + + EL
Sbjct: 1 MITIEDLKKKQSETSRLIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKI 60
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I +I ++G P+NM+G+ G S V + ID+ + + WDERL+TV A +
Sbjct: 61 IEEYDIKGIVVGNPINMDGTLGRSSQSVND-VSDNIDKAIDIDVCLWDERLSTVGAFNLS 119
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
++V+ KR + +D AAA ILQ +D ++
Sbjct: 120 SQLDVNVSKREKNIDQNAAAFILQGAIDFLNN 151
>gi|182678862|ref|YP_001833008.1| Holliday junction resolvase-like protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|226725489|sp|B2IEC1|RUVX_BEII9 RecName: Full=Putative Holliday junction resolvase
gi|182634745|gb|ACB95519.1| Holliday junction resolvase YqgF [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 165
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+L + +L L P Q + IDLGTK IGL++SD RR A P + R K T+ A LL+
Sbjct: 5 VLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLAL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
++AAF+IGLPLNM+GS GPRV +T AFV + PF +WDERL+T + + L
Sbjct: 65 ADQFDVAAFVIGLPLNMDGSAGPRVQATEAFVR-SLSGLTSRPFCYWDERLSTAAVTRDL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
I + SR KR VD +AAA ILQ LDR++++ +
Sbjct: 124 IAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETA 160
>gi|304407567|ref|ZP_07389219.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
gi|304343518|gb|EFM09360.1| Holliday junction resolvase YqgF [Paenibacillus curdlanolyticus
YK9]
Length = 138
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D G + IG+A+SD A + R+ E+ + + ++GLP
Sbjct: 1 MRIMGLDYGDRNIGVAVSDAFGWTAQGTGVVQRRHNRGEFDEIAQLVKDHEVTEIVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNGS GPR AF + +K+ +P WDERLTTVSA++ L++ +VSRKKR V
Sbjct: 61 KNMNGSVGPRGEICIAFAE-ELQQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LD +
Sbjct: 120 DKLAATFILQNYLDSKA 136
>gi|254420883|ref|ZP_05034607.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
gi|196187060|gb|EDX82036.1| conserved hypothetical protein TIGR00250 [Brevundimonas sp. BAL3]
Length = 159
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L + DL + P+ P +DLG K IG+A+SD R A P + + K T A +L
Sbjct: 1 MPVLDLLDLPAACPPDTPWMGLDLGEKTIGVAVSDATRLIASPLELIRKSKFTLEADQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++A +IGLP NM+G+EGPR S RAF ++R V FWDERL+T + ++
Sbjct: 61 KLMAHRKVSALVIGLPANMDGTEGPRAQSCRAFAR-NLERLRPVNIAFWDERLSTSAVER 119
Query: 121 ILID-MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI+ ++++RK+R Q VD AAA ILQ LDR+
Sbjct: 120 FLIEDLDLNRKRRAQVVDRTAAAWILQGALDRVR 153
>gi|304436654|ref|ZP_07396623.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370350|gb|EFM24006.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 143
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 72/143 (50%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ S+DLG IG+A+SD A + R + L + + A + GL
Sbjct: 1 MKRYMSLDLGDATIGVAVSDLLGLTAQGVETVRRTTLEADIARLGQLMQEYEVDALVAGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R RAF+ + + +WDERL+TV+A + LI +VSRKKR +
Sbjct: 61 PKHMNGDEGERCSIVRAFMAKVEEHFPRTEVHYWDERLSTVAASRALIAGDVSRKKRRKV 120
Query: 136 VDSIAAALILQEVLDRISFLESS 158
+D +AA ILQ LDR +
Sbjct: 121 IDKMAAVYILQGFLDRQNMENHG 143
>gi|169343788|ref|ZP_02864787.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
gi|169298348|gb|EDS80438.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens C
str. JGS1495]
Length = 137
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G+K IG+A+SDP A + R T+ ++ + ++G+P
Sbjct: 1 MRILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTIGPSGEMVKNLCE-QIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D IAA ILQ LDRIS
Sbjct: 120 DKIAATYILQGYLDRIS 136
>gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp.
ORS278]
gi|167012698|sp|A4YWF9|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase
gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS278]
Length = 161
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP RR A + RK A LL+
Sbjct: 4 PILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ F++GLP+NM+GSEGPR STRAF + +P WDERL+T + ++
Sbjct: 64 ICAERKVVGFVLGLPINMDGSEGPRAQSTRAFAR-NLAGLTDLPIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR + +D+ AA ILQ LDR++ L S
Sbjct: 123 LIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRS 159
>gi|115375305|ref|ZP_01462569.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|310823720|ref|YP_003956078.1| holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
gi|115367678|gb|EAU66649.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|309396792|gb|ADO74251.1| Holliday junction resolvase [Stigmatella aurantiaca DW4/3-1]
Length = 150
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLGTK IG+A+SD A + R + L + ++GLP
Sbjct: 1 MRTLGLDLGTKTIGVAVSDGLGLTAQALTTVRRTNLKADLAALAELAREHEASRIVLGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSEGPR ++R F + + +++P FWDERL+TV+A++ L++ +++R KR Q +
Sbjct: 61 LNMDGSEGPRAEASRKFAD-ALGQALHLPVEFWDERLSTVAAERTLLEADLTRAKRKQVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 120 DQMAAQFILQGWLD 133
>gi|18310760|ref|NP_562694.1| Holliday junction resolvase-like protein [Clostridium perfringens
str. 13]
gi|110799090|ref|YP_696464.1| Holliday junction resolvase-like protein [Clostridium perfringens
ATCC 13124]
gi|110803306|ref|YP_699063.1| Holliday junction resolvase-like protein [Clostridium perfringens
SM101]
gi|168207854|ref|ZP_02633859.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|168211403|ref|ZP_02637028.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|168214255|ref|ZP_02639880.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|168218243|ref|ZP_02643868.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
gi|182625715|ref|ZP_02953484.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|32130045|sp|Q8XJH8|RUVX_CLOPE RecName: Full=Putative Holliday junction resolvase
gi|118597205|sp|Q0TPH6|RUVX_CLOP1 RecName: Full=Putative Holliday junction resolvase
gi|118597206|sp|Q0SS44|RUVX_CLOPS RecName: Full=Putative Holliday junction resolvase
gi|18145441|dbj|BAB81484.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110673737|gb|ABG82724.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
ATCC 13124]
gi|110683807|gb|ABG87177.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
SM101]
gi|170660825|gb|EDT13508.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens E
str. JGS1987]
gi|170710607|gb|EDT22789.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens B
str. ATCC 3626]
gi|170714263|gb|EDT26445.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
CPE str. F4969]
gi|177909117|gb|EDT71592.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens D
str. JGS1721]
gi|182379748|gb|EDT77227.1| conserved hypothetical protein TIGR00250 [Clostridium perfringens
NCTC 8239]
Length = 137
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G+K IG+A+SDP A + R T+ ++ + + G+P
Sbjct: 1 MRILGLDIGSKTIGVAVSDPLGWTAQGVTTIKRDCYTKDVEAVMKICKEYGVETIVAGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP + I++ FWDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTIGPSGEMVKNLCE-QIEKSFDGKIEFWDERLTTVAAHRAMLEADLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D IAA ILQ LDRIS
Sbjct: 120 DKIAATYILQGYLDRIS 136
>gi|329851398|ref|ZP_08266155.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
gi|328840244|gb|EGF89816.1| hypothetical UPF0081 family protein [Asticcacaulis biprosthecum
C19]
Length = 157
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I +L L + +DLG K IG+A+SD A P + + K T A L
Sbjct: 1 MAVIDITELKAGLPARHALLGLDLGEKTIGVAVSDISLTLASPLELIRKTKFTHEAERLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ A +IGLP+NM+G+EGPR S RAF N++ R VP FWDER ++ + +
Sbjct: 61 HLMQAREAAGLVIGLPVNMDGTEGPRAQSCRAFARNLL-RLRDVPIAFWDERWSSAAMNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
LI + ++SR KR + +D AAA ILQ LDRI
Sbjct: 120 FLIEEADLSRAKRAEVIDRNAAAYILQGALDRI 152
>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM
555]
gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
gi|189046093|sp|A5N7T7|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
gi|254767509|sp|B9E198|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
555]
gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 137
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SDP A + RK + EL + + + GLP
Sbjct: 1 MRILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F + I+ + +P WDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTLGPQSEKVLKFCNI-IEEVINLPIKMWDERLTTVAANKAMLEADLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LDRIS
Sbjct: 120 DKMAATYILQGYLDRIS 136
>gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum
USDA 110]
gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110]
Length = 167
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M IL + D + +DLGTK IG+A+S+P RR A + RK Q A
Sbjct: 7 MPALILPLVDAATHWPERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAAR 66
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ + F++GLP+NM+GSEGPR STRAF + +P WDERL+T +
Sbjct: 67 LLAIAAERKVVGFVLGLPINMDGSEGPRAQSTRAFAR-NLANLTTLPIGLWDERLSTAAV 125
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ LI M+VSR KR + +D AA ILQ LDR++ L + G
Sbjct: 126 ERELIGMDVSRAKRAEVIDEHAAIFILQGALDRLANLRTGNG 167
>gi|168186829|ref|ZP_02621464.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295213|gb|EDS77346.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 135
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+A+SDP A + RK V + EL + I GLP
Sbjct: 1 MRILGLDVGDRTIGVAVSDPLGFTAQGVTTIHRKNVEEDIDELKKICKEYAVELIISGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + F + K+ +P WDERLTTV+A + +++ N+SR KR + V
Sbjct: 61 KNMNGTVGEQGEKVIEFCDI-LKTKLEIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA ILQ LD I
Sbjct: 120 DKMAATYILQGYLDSI 135
>gi|298291510|ref|YP_003693449.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
gi|296928021|gb|ADH88830.1| Holliday junction resolvase YqgF [Starkeya novella DSM 506]
Length = 160
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M IL + + L + +DLGTK IG+A SDP RR A + RK+ T A
Sbjct: 1 MPALILPVAEAAGILPARGSLIGLDLGTKTIGVASSDPDRRIAAGVETIARKQFTPDAGR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
+LS ++GLP+NM+GSEGPR ++RAF + R +P + WDERL+T +
Sbjct: 61 VLSLAAARGAVGLVLGLPVNMDGSEGPRAQASRAFAR-NLSRLTELPIMLWDERLSTAAV 119
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
++ +I ++SR +R + VD AAA ILQ LDR+ F+ +
Sbjct: 120 ERDMIATDMSRARRAEVVDQQAAAFILQGALDRLRFIAEGR 160
>gi|303230717|ref|ZP_07317464.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514477|gb|EFL56472.1| RNAse H domain protein, YqgF family [Veillonella atypica
ACS-049-V-Sch6]
Length = 140
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 1/141 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G++ IG+A SD A + R + L I+ + ++G+P
Sbjct: 1 MRIMALDVGSRTIGIACSDALLMTAQGIETIRRTSLENDFNRLRELISEYEVHELVVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG++G R T FV M + +P FWDERL+TV A++ LI +VSRKKR +
Sbjct: 61 KNMNGTKGDRAEKTEEFVEKM-KAVIDLPVTFWDERLSTVMAERQLIAADVSRKKRKGVI 119
Query: 137 DSIAAALILQEVLDRISFLES 157
D +AA +ILQ LDR+ F +S
Sbjct: 120 DKMAAVVILQGYLDRLQFSKS 140
>gi|294853606|ref|ZP_06794278.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
gi|294819261|gb|EFG36261.1| Holliday junction resolvase [Brucella sp. NVSL 07-0026]
Length = 162
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ IE++ LKP Q +A +DLGTK IGLA+SD G FAHPRP + R K T A LL
Sbjct: 1 MATAEIEEIPALLKPGQTVAGLDLGTKTIGLAVSDLGLSFAHPRPVIKRVKFTIDAQVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+ + +IGLP+N +G+ GPRV +TRAFV M + FVFWDERL+TV+A++
Sbjct: 61 KALETDKVGVIVIGLPMNTDGTAGPRVQATRAFVRTM-QPLTDLSFVFWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR KR ++DS AAA ILQ LDR+ + +
Sbjct: 120 ALIGMDVSRGKRADRIDSAAAAFILQGALDRLHMMRRN 157
>gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
Length = 135
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SDP A + RK++ + E+ I I GLP
Sbjct: 1 MRILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + F ++ K+ +P WDERLTTV+A + +++ N+SR KR + V
Sbjct: 61 KNMNGTIGEQGEKVLEFCD-VLKEKLDIPIKMWDERLTTVAAHKAMLEANLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRI 152
D IAA ILQ LD I
Sbjct: 120 DKIAATYILQGYLDSI 135
>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
Length = 140
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G K IG+A+SDP A + R + + L + + ++GL
Sbjct: 1 MRVMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ AF+ + ++ +P WDERL+TV+A++ L++ +VSR KR +
Sbjct: 61 PKNMNGTLGPQGEKVLAFIE-RLKERINLPVKTWDERLSTVAAERALLEADVSRSKRKKV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AAA+ILQ LD
Sbjct: 120 IDKMAAAVILQGYLDS 135
>gi|299135137|ref|ZP_07028328.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
gi|298590114|gb|EFI50318.1| Holliday junction resolvase YqgF [Afipia sp. 1NLS2]
Length = 165
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M IL + + P + +DLGTK IG+A+SDP RR A + RK T+ A E
Sbjct: 6 MPALILPLTEAATHWTPRGALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRKTFTKDAAE 65
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL + F++GLP+NM+GSEGPR STRAF N + + WDERL+T +
Sbjct: 66 LLRIAGERASSGFVLGLPINMDGSEGPRAQSTRAFARNF-SKLTDLAIGLWDERLSTAAV 124
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
++ LI +VSR +R + +D AA ILQ LDR++ L
Sbjct: 125 ERELIANDVSRARRAEVIDEHAAIFILQGALDRLAALSRQ 164
>gi|261405445|ref|YP_003241686.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
gi|261281908|gb|ACX63879.1| Holliday junction resolvase YqgF [Paenibacillus sp. Y412MC10]
Length = 137
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D G +RIG+AISD A + R++ + + + + ++GL
Sbjct: 1 MKKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR F + + + +P WDERL+TVSA++ L++ +VSRKKR Q
Sbjct: 61 PKNMNGTIGPRGEICMEFAN-TLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA+LILQ LD
Sbjct: 120 VDKMAASLILQNYLDSKR 137
>gi|121602720|ref|YP_989125.1| hypothetical protein BARBAKC583_0838 [Bartonella bacilliformis
KC583]
gi|167012695|sp|A1UT22|RUVX_BARBK RecName: Full=Putative Holliday junction resolvase
gi|120614897|gb|ABM45498.1| conserved hypothetical protein TIGR00250 [Bartonella bacilliformis
KC583]
Length = 161
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I+ ++ L Q IA +DLGTK IG+AISD F++PRP + RKK T AL+L+
Sbjct: 1 MAIITIDRVISHLLSKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALKLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ IIGLP+NM+GS GPRV +TR FV I +PF+FWDERL+T++AQ+
Sbjct: 61 KIFDHENVGVAIIGLPINMDGSNGPRVQATRTFVS-NIAMYTKIPFIFWDERLSTIAAQR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L++++VSR KR ++DS AAA ILQ LDRI L +
Sbjct: 120 HLLEIDVSRIKRENRIDSAAAAFILQGALDRIQILRQN 157
>gi|329926758|ref|ZP_08281166.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
gi|328938958|gb|EGG35326.1| RNAse H domain protein, YqgF family [Paenibacillus sp. HGF5]
Length = 137
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D G +RIG+AISD A + R++ + + + + ++GL
Sbjct: 1 MKKIMGLDYGDRRIGVAISDVFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR F + + + +P WDERL+TVSA++ L++ +VSRKKR Q
Sbjct: 61 PKNMNGTIGPRGEICMEFAN-TLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQV 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA+LILQ LD
Sbjct: 120 VDKMAASLILQNYLDSKR 137
>gi|292670704|ref|ZP_06604130.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
gi|292647650|gb|EFF65622.1| YqgF family crossover junction endodeoxyribonuclease [Selenomonas
noxia ATCC 43541]
Length = 137
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 76/137 (55%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G IG+A+SD A + R+ ++ L I A + GLP +M
Sbjct: 1 MSLDIGDATIGVAVSDLLGLTAQGVETIRRRDLSDDLNRLGVLIQEYEADALVAGLPKHM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG EG R RAF+ + +R + +WDERL+TV+A + L++ +VSRKKR + +D +
Sbjct: 61 NGQEGERCALVRAFMADAAERFPMMEIHYWDERLSTVAASRTLLEGDVSRKKRRKVIDKM 120
Query: 140 AAALILQEVLDRISFLE 156
AA ILQ LDR L+
Sbjct: 121 AAVYILQGFLDRQQHLK 137
>gi|91977491|ref|YP_570150.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
gi|123735326|sp|Q135J0|RUVX_RHOPS RecName: Full=Putative Holliday junction resolvase
gi|91683947|gb|ABE40249.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris BisB5]
Length = 160
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP R+ A + R T A +L+
Sbjct: 4 PILPLIEAAAHWPARGALLGLDLGTKTIGVAVSDPDRKLATGIETVARTAFTADAKRVLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ F++GLPLNM+GSEGPR STRAF N R +P WDERL+T + ++
Sbjct: 64 LAAERSACGFVLGLPLNMDGSEGPRAQSTRAFARNF-ARLTELPIGLWDERLSTAAVERA 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
LI +VSR KR + +D AA ILQ LDR+ L
Sbjct: 123 LIANDVSRAKRAKIIDEHAAIYILQGALDRLVALNR 158
>gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1]
gi|167012697|sp|A5EKQ4|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase
gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
Length = 161
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP RR A + RK A LL+
Sbjct: 4 PILPLIEAASRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ + F++GLP+NM+GSEGPR STRAF + +P WDERL+T + ++
Sbjct: 64 ISSERKVVGFVLGLPINMDGSEGPRAQSTRAFAR-NLANLTDLPIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
LI M+VSR +R + +D+ AA ILQ LDR++ L S
Sbjct: 123 LIGMDVSRARRAEVIDTHAAIFILQGALDRLATLRRS 159
>gi|239627761|ref|ZP_04670792.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517907|gb|EEQ57773.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 150
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
N I +D G+K +G+A+ DP A + RK K+ QT + + I I +
Sbjct: 2 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRKDENKLRQTLARIEALIGQYEIERIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G R T F ++R+ +P V WDERLTTV+A ++LI+ V R+ R
Sbjct: 62 LGYPKNMNNTLGERAVKTEEF-KTSLERRTGLPVVLWDERLTTVAASRVLIESGVRREHR 120
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+ VD IAAA+ILQ LD +S
Sbjct: 121 KESVDQIAAAMILQGYLDSLSN 142
>gi|103486415|ref|YP_615976.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
gi|124107445|sp|Q1GUM9|RUVX_SPHAL RecName: Full=Putative Holliday junction resolvase
gi|98976492|gb|ABF52643.1| Holliday junction resolvase YqgF [Sphingopyxis alaskensis RB2256]
Length = 152
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M D +L +A +D+GTK IG+A+ D G FA P +VRK+ + L
Sbjct: 1 MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + ++GLPLNM+GS+ PR STRAF N+ + +P + WDER +T + ++
Sbjct: 61 ALVAGQAVVGLVVGLPLNMDGSDSPRTQSTRAFARNL--APLGLPVLLWDERWSTAAVER 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+I +VSR KR +++DS AAA ILQ +D ++
Sbjct: 119 AMIAADVSRAKRAERIDSAAAAFILQGAIDAMT 151
>gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [NC10 bacterium 'Dutch
sediment']
Length = 144
Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q ID GTKRIG+AISD A P P L + + I ++GL
Sbjct: 1 MQRYLGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP AF ++ V WDERLT+++A+++LI+ ++SR KR ++
Sbjct: 61 PKNMNGTLGPSAERALAFAGQ-LEEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRR 119
Query: 136 VDSIAAALILQEVLDRISFLESS 158
VD +AA LILQ LDR +
Sbjct: 120 VDQMAAVLILQGFLDRRHRQQEH 142
>gi|46907730|ref|YP_014119.1| Holliday junction resolvase-like protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093424|ref|ZP_00231189.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|226224103|ref|YP_002758210.1| hypothetical protein Lm4b_01512 [Listeria monocytogenes Clip81459]
gi|254824439|ref|ZP_05229440.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254852126|ref|ZP_05241474.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254931437|ref|ZP_05264796.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|255521191|ref|ZP_05388428.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J1-175]
gi|300764832|ref|ZP_07074822.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|62900990|sp|Q71ZG8|RUVX_LISMF RecName: Full=Putative Holliday junction resolvase
gi|259495707|sp|C1KVE9|RUVX_LISMC RecName: Full=Putative Holliday junction resolvase
gi|46880999|gb|AAT04296.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018203|gb|EAL08971.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 4b H7858]
gi|225876565|emb|CAS05274.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605429|gb|EEW18037.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293582988|gb|EFF95020.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293593675|gb|EFG01436.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300514508|gb|EFK41565.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328465540|gb|EGF36769.1| Holliday junction resolvase-like protein [Listeria monocytogenes
1816]
Length = 138
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + ++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61 LPKNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKE 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKLAAVMILQSYLDTTN 138
>gi|118597217|sp|Q1QL26|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M +L + + + +DLGTK IG+A+SDP RR A L RK T A
Sbjct: 1 MPASVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAAR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ N A F++GLP+NM+GSEGPR STRAF + R + WDERL+TV+
Sbjct: 61 LLAIAGERNAAGFVLGLPINMDGSEGPRAQSTRAFAR-NLARLTDLAIGLWDERLSTVAV 119
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
++ LI M++SR KR + +D AA ILQ LDR++ L +
Sbjct: 120 ERELIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 159
>gi|300022168|ref|YP_003754779.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
gi|299523989|gb|ADJ22458.1| Holliday junction resolvase YqgF [Hyphomicrobium denitrificans ATCC
51888]
Length = 166
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
++ + + + + ID GTK +GLA+SD R A + R K T A LL+ T
Sbjct: 16 DPQEFIAAATASGRLIGIDGGTKTLGLALSDVTRTIASALETIRRTKFTADAARLLALAT 75
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
+ ++GLP N++G+EGPR +TRA +++ +P + WDERLTT A+++LID
Sbjct: 76 EHGVTGLVLGLPRNLDGTEGPRAQATRALAR-NLNKLSPLPILLWDERLTTAEAERMLID 134
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ SRK+R + +D +AA +ILQ LDR+
Sbjct: 135 ADQSRKRRGEVIDKLAATIILQSALDRL 162
>gi|310643513|ref|YP_003948271.1| holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
Length = 138
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D G +RIG+A+SD A + R+ ++ + + I ++GLP
Sbjct: 1 MKVMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR F + + + +P WDERLTT SA++ L++ +VSRKKR Q V
Sbjct: 61 KNMNGTVGPRGEICIEFAN-RLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA+LILQ LD S
Sbjct: 120 DKLAASLILQNYLDAHS 136
>gi|197104788|ref|YP_002130165.1| putative Holliday junction resolvase [Phenylobacterium zucineum
HLK1]
gi|226731635|sp|B4R966|RUVX_PHEZH RecName: Full=Putative Holliday junction resolvase
gi|196478208|gb|ACG77736.1| putative Holliday junction resolvase [Phenylobacterium zucineum
HLK1]
Length = 156
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ + DL PN P+ +DLG K IG+A+SD R A P + + K T A L
Sbjct: 1 MAVVDLIDLPAIAPPNTPLVGLDLGEKTIGVAVSDATRMVASPLGLIRKTKFTDDAKALF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLP+NM+G+EG R S RAF N++ + +P FWDER++T++ +
Sbjct: 61 KLMESRRASGIVIGLPVNMDGTEGTRCQSNRAFARNLLRLREDLPIAFWDERMSTMAVNR 120
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L+ + +++R +R VD +AAA ILQ LDR+ L
Sbjct: 121 MLVGEADMTRARRADVVDKMAAAWILQGALDRLRNL 156
>gi|329889392|ref|ZP_08267735.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
gi|328844693|gb|EGF94257.1| conserved hypothetical UPF0081 family protein [Brevundimonas
diminuta ATCC 11568]
Length = 154
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +L + +L + PN P +DLG IG+++SD GR A P + + K +Q A +L
Sbjct: 1 MPVLDLSELPAACPPNTPWLGLDLGENTIGVSVSDTGRIIASPLELIRKTKFSQDAEQLF 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++A +IGLPLNM+G+EGPR S RAF ++R V F DERL+T + ++
Sbjct: 61 RIMDGRKVSALVIGLPLNMDGTEGPRAQSCRAFAR-NLERFRPVNVAFQDERLSTTAVER 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI +++++RK+R VD AAA ILQ LDR+
Sbjct: 120 FLIDELDLTRKRRADVVDRTAAAWILQGALDRLR 153
>gi|16800605|ref|NP_470873.1| Holliday junction resolvase-like protein [Listeria innocua
Clip11262]
gi|32130053|sp|Q92BL1|RUVX_LISIN RecName: Full=Putative Holliday junction resolvase
gi|16414010|emb|CAC96768.1| lin1537 [Listeria innocua Clip11262]
gi|313618843|gb|EFR90723.1| putative Holliday junction resolvase [Listeria innocua FSL S4-378]
gi|313623694|gb|EFR93845.1| putative Holliday junction resolvase [Listeria innocua FSL J1-023]
Length = 138
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + ++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDESRKQFGYDRVKELVLEYEVEKVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61 LPKNMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKE 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKLAAVMILQSYLDTTN 138
>gi|16803542|ref|NP_465027.1| Holliday junction resolvase-like protein [Listeria monocytogenes
EGD-e]
gi|224500668|ref|ZP_03669017.1| hypothetical protein LmonF1_13746 [Listeria monocytogenes Finland
1988]
gi|224501558|ref|ZP_03669865.1| hypothetical protein LmonFR_03407 [Listeria monocytogenes FSL
R2-561]
gi|254828264|ref|ZP_05232951.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254829739|ref|ZP_05234394.1| Holliday junction resolvase-like protein [Listeria monocytogenes
10403S]
gi|254898332|ref|ZP_05258256.1| Holliday junction resolvase-like protein [Listeria monocytogenes
J0161]
gi|254912176|ref|ZP_05262188.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936504|ref|ZP_05268201.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|255018845|ref|ZP_05290971.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL F2-515]
gi|290893861|ref|ZP_06556839.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|315282410|ref|ZP_07870829.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
gi|32130047|sp|Q8Y723|RUVX_LISMO RecName: Full=Putative Holliday junction resolvase
gi|16410931|emb|CAC99580.1| lmo1502 [Listeria monocytogenes EGD-e]
gi|258600652|gb|EEW13977.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258609098|gb|EEW21706.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|290556578|gb|EFD90114.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|293590149|gb|EFF98483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|313608700|gb|EFR84531.1| putative Holliday junction resolvase [Listeria monocytogenes FSL
F2-208]
gi|313613944|gb|EFR87669.1| putative Holliday junction resolvase [Listeria marthii FSL S4-120]
Length = 138
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + ++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61 LPKNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKE 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKLAAVMILQSYLDTTN 138
>gi|323136211|ref|ZP_08071293.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
gi|322398285|gb|EFY00805.1| Holliday junction resolvase YqgF [Methylocystis sp. ATCC 49242]
Length = 157
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 6 IEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
IE++ + L + +DLGTK IGLA+SD RR A P + R K +Q A LL
Sbjct: 8 IEEVARVLPAKGRLMGLDLGTKTIGLALSDVERRLASPLDTIKRVKFSQDAGALLQRAQD 67
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
++ A + GLPLNM+G+ GPR +TRAF+ + + +PFVFWDERL+T + + LI
Sbjct: 68 FDVQALVFGLPLNMDGTAGPRAQATRAFMR-NLRKLTPIPFVFWDERLSTAAVTRELIAQ 126
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ SR KR + VD +AAA ILQ LDR+S L
Sbjct: 127 DASRAKRAEVVDRMAAAYILQGALDRLSRL 156
>gi|90423758|ref|YP_532128.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisB18]
gi|146325601|sp|Q215X7|RUVX_RHOPB RecName: Full=Putative Holliday junction resolvase
gi|90105772|gb|ABD87809.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris
BisB18]
Length = 163
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
IL + + + +DLGTK IG+A+SDP RR A ++ A LL
Sbjct: 4 PILPLIEAAAQWPARGALIGLDLGTKTIGVAVSDPDRRLATGVETIIHTAFKANAARLLL 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
N F++GLP+NM+GSEGPR STRAF N R +P WDERL+T + ++
Sbjct: 64 LAGQRNAVGFVLGLPINMDGSEGPRAQSTRAFARNF-ARLTDLPIGLWDERLSTSAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
LI +VSR KR + +D AA ILQ LDR++ L +
Sbjct: 123 LIANDVSRAKRAKVIDEHAAIFILQGALDRLTVLNA 158
>gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622]
gi|118597216|sp|Q1D063|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase
gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK
1622]
Length = 151
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLGTK IG+A+SD A + R + L + + + ++GLP
Sbjct: 1 MRTMGLDLGTKTIGVAVSDGLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSEGPR ++R F + + + V WDERL+TV+A + L++ +VSR +R + +
Sbjct: 61 LNMDGSEGPRAEASRKFAD-TLAQSLGVTVELWDERLSTVAATRTLLEADVSRARRREVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA ILQ LD
Sbjct: 120 DQVAAQFILQGWLD 133
>gi|92117802|ref|YP_577531.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
Length = 168
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M +L + + + +DLGTK IG+A+SDP RR A L RK T A
Sbjct: 6 MPASVLPLIEAAAHWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTADAAR 65
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ N A F++GLP+NM+GSEGPR STRAF + R + WDERL+TV+
Sbjct: 66 LLAIAGERNAAGFVLGLPINMDGSEGPRAQSTRAFAR-NLARLTDLAIGLWDERLSTVAV 124
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
++ LI M++SR KR + +D AA ILQ LDR++ L +
Sbjct: 125 ERELIGMDMSRAKRAKVIDEHAAIFILQGALDRLAVLRRT 164
>gi|315303254|ref|ZP_07873898.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
gi|313628366|gb|EFR96855.1| putative Holliday junction resolvase [Listeria ivanovii FSL F6-596]
Length = 138
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + ++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYERVKELVLEYEVEKVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61 LPKNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKE 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKLAAVMILQSYLDTTN 138
>gi|254519280|ref|ZP_05131336.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226913029|gb|EEH98230.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 138
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G+K IG+AISDP A + R K Q E+ ++ +IGLP
Sbjct: 1 MRILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G I + WDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTIGESGERVLELSEI-IKEATGIKVEMWDERLTTVAAHKAMLEADLSRGKRKKIV 119
Query: 137 DSIAAALILQEVLDRISF 154
D IAA ILQ LDR+S
Sbjct: 120 DKIAATYILQGYLDRLSM 137
>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
Length = 139
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 73/138 (52%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+D+G K IG+AISD A + R + + L I +I ++GL
Sbjct: 1 MPRSMGLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ F + R V V WDERLTTV+A++ LI+ +VSRKKR +
Sbjct: 61 PKNMNGTIGPQGEKVLEFNERLKGRFKDVEIVLWDERLTTVAAERSLIEADVSRKKRKEV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD S
Sbjct: 121 IDKMAAVYILQGYLDSAS 138
>gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16]
gi|62900942|sp|Q5WHM6|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase
gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16]
Length = 142
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIGLPL 77
+D+GTK IG+AISD A P + R + L I ++ +IG P
Sbjct: 4 IGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPK 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ G + F ++++ V V WDERLTT +AQ++LID +VSRKKR + VD
Sbjct: 64 NMNGTVGESATRSETFAR-TLEQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVD 122
Query: 138 SIAAALILQEVLDRISF 154
+AA ILQ LDR S
Sbjct: 123 KMAAVFILQGYLDRQSH 139
>gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
gi|187772477|gb|EDU36279.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
Length = 137
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+A+SDP A + RK E+ + + GLP
Sbjct: 1 MRILGLDIGDRTIGVALSDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F +I V + WDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTLGPQSEKVLEFCD-LIKEHVNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LD +S
Sbjct: 120 DKMAATYILQGYLDSLS 136
>gi|319405723|emb|CBI79346.1| putative resolvase [Bartonella sp. AR 15-3]
Length = 163
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I+ I ++ L Q IAS+DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAIISINEVTIHLLFGQTIASLDLGTKTIGIAISDISLTFSNPRPVIYRKKFTLDALTLI 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ A I+GLP+NMNGS GPRV +T+ FV NM +PF+FWDERL+T++A++
Sbjct: 61 EIFNNENVGAIIVGLPINMNGSNGPRVQATKTFVSNM-ATYTKIPFIFWDERLSTIAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
++MN+SR KR ++DS AAA ILQ LDRI L+S+
Sbjct: 120 YFLEMNMSRSKRKSRIDSAAAAFILQGALDRIKTLQSN 157
>gi|167628659|ref|YP_001679158.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
Ice1]
gi|226725525|sp|B0TFZ0|RUVX_HELMI RecName: Full=Putative Holliday junction resolvase
gi|167591399|gb|ABZ83147.1| holliday junction resolvase, putative [Heliobacterium modesticaldum
Ice1]
Length = 149
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SD A + R ++ L + T + + GLP
Sbjct: 1 MRIMGLDVGDKTIGVAVSDLMGWTAQGVATIRRSRLAADLEHLRELVKTYEVERIVCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR R F + ++K+ +P +WDERLTTV+AQ+ LI ++SR KR Q V
Sbjct: 61 RNMNGTYGPRAEGIRKFGSLV-EKKLNIPVDYWDERLTTVAAQKTLIAGDLSRAKRKQVV 119
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D +AA LILQ +D + L + +
Sbjct: 120 DKLAAVLILQNYMDAKAHLAAKE 142
>gi|313633177|gb|EFS00059.1| putative Holliday junction resolvase [Listeria seeligeri FSL
N1-067]
gi|313637761|gb|EFS03116.1| putative Holliday junction resolvase [Listeria seeligeri FSL
S4-171]
Length = 138
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + ++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61 LPKNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKE 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKLAAVMILQSYLDTTN 138
>gi|39936176|ref|NP_948452.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris CGA009]
gi|192291893|ref|YP_001992498.1| Holliday junction resolvase-like protein [Rhodopseudomonas
palustris TIE-1]
gi|62900984|sp|Q6N569|RUVX_RHOPA RecName: Full=Putative Holliday junction resolvase
gi|226731645|sp|B3Q9X0|RUVX_RHOPT RecName: Full=Putative Holliday junction resolvase
gi|39650031|emb|CAE28554.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192285642|gb|ACF02023.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris TIE-1]
Length = 160
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M IL + + + +DLGTK IG+A SDP R+ A + RK T A
Sbjct: 1 MPALILPLIEAAVHWPVRGALLGLDLGTKTIGVAASDPDRKLATGVETIARKAFTADAAR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ F++GLPLNM+GSEGPR STRAF + R +P WDERL+T +
Sbjct: 61 LLALAAERTACGFVLGLPLNMDGSEGPRAQSTRAFAR-NLSRLTELPIGLWDERLSTAAV 119
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
++ LI +VSR KR + +D AA ILQ LDR++ L ++
Sbjct: 120 ERELIANDVSRAKRAKVIDEHAAIFILQGALDRLAALRRAE 160
>gi|331269728|ref|YP_004396220.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
gi|329126278|gb|AEB76223.1| Holliday junction resolvase YqgF [Clostridium botulinum BKT015925]
Length = 135
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SDP A + RK++ + E+ I I GLP
Sbjct: 1 MRILGLDIGNKTIGVAVSDPLGFTAQGITTIHRKELEKDIEEVGKICHEYKIELIISGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + F + D+ +P WDERLTTV+A + +++ N+SR KR + V
Sbjct: 61 KNMNGTIGEQGEKVLEFCDVLKDKL-DIPIKMWDERLTTVAAHRAMLEANLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRI 152
D IAA ILQ LD I
Sbjct: 120 DKIAATYILQGYLDSI 135
>gi|254294342|ref|YP_003060365.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
gi|254042873|gb|ACT59668.1| Holliday junction resolvase YqgF [Hirschia baltica ATCC 49814]
Length = 150
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALEL 59
M+IL ++ L P P+ +D GTK IG+A +D R A P + + KK+ L
Sbjct: 1 MAILELDQL----PPRGPLLGLDPGTKTIGIAAADGLRMIASPVETIKKGKKLAPALTRL 56
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+IGLP+NM+GS GPRV + RA N+++++ VP FWDERL+T + +
Sbjct: 57 FELYDDRVCVGLVIGLPVNMDGSHGPRVQAVRALARNILEKR-DVPIAFWDERLSTAAVE 115
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ L++ + SR KR + +D +AAA ILQ +DR+S
Sbjct: 116 RTLLEADTSRAKRAEVIDKMAAAYILQGAIDRLSN 150
>gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris
BL2]
gi|254767519|sp|B8EPC5|RUVX_METSB RecName: Full=Putative Holliday junction resolvase
gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2]
Length = 161
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
IL + DL + P Q + IDLGTK IGLA+SD RR A P + R K ++ A+ L+
Sbjct: 5 ILEVADLPARVGPRQRLIGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIEL 64
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ A IIGLPLNM+GS+GPRV +TRAFV + V PFV+WDERL+T + + L
Sbjct: 65 AEKFDAGALIIGLPLNMDGSQGPRVQATRAFVR-SLSALVSKPFVYWDERLSTAAVTRSL 123
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
ID +VSR KR + VD +AAA ILQ VLDR+ +E+
Sbjct: 124 IDQDVSRLKRAEVVDKMAAAYILQGVLDRLRRIEADA 160
>gi|154247845|ref|YP_001418803.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
gi|154161930|gb|ABS69146.1| Holliday junction resolvase YqgF [Xanthobacter autotrophicus Py2]
Length = 176
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
I + D+ L P + +DLGTK IG+A DP RR A + R K T A LL+
Sbjct: 9 PIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLA 68
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
F++GLPLNM+ SEGPR ++RAF + R +P WDERL+T + ++
Sbjct: 69 LAAERRAVGFVLGLPLNMDASEGPRAQASRAFAR-NLARLTALPIALWDERLSTAAVERA 127
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
LI +VSR +R VD AAA IL+ L +S
Sbjct: 128 LISADVSRARRAAVVDQHAAAFILEGALGFLS 159
>gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402
065]
Length = 137
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+AISDP A + RK E+ + + GLP
Sbjct: 1 MRILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F +I + + WDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTLGPQSEKVLEFCD-LIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LD +S
Sbjct: 120 DKVAATYILQGYLDSLS 136
>gi|300854403|ref|YP_003779387.1| putative Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
Length = 137
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+A+SDP A + RK + EL S + + GLP
Sbjct: 1 MRILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + +F +I++ + VP WDERLTTV+A + +I+ ++SR KR + V
Sbjct: 61 KNMNGTLGLQSEKVLSFCK-VIEQSIKVPIKMWDERLTTVAAHRAMIEGDLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LD IS
Sbjct: 120 DKMAAIYILQGYLDSIS 136
>gi|148380517|ref|YP_001255058.1| hypothetical protein CBO2562 [Clostridium botulinum A str. ATCC
3502]
gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. ATCC 19397]
gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. Hall]
gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F
str. Langeland]
gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1
str. Okra]
gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3
str. Loch Maree]
gi|226949917|ref|YP_002805008.1| hypothetical protein TIGR00250 [Clostridium botulinum A2 str.
Kyoto]
gi|237796000|ref|YP_002863552.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|167012712|sp|A7FWJ3|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase
gi|167012713|sp|A5I4Z3|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase
gi|167012714|sp|A7GGE9|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase
gi|226725504|sp|B1IJG5|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase
gi|226725505|sp|B1KXB5|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase
gi|254767507|sp|C1FTB8|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase
gi|259495699|sp|C3L148|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase
gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. ATCC 19397]
gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. Hall]
gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. Langeland]
gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1
str. Okra]
gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3
str. Loch Maree]
gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2
str. Kyoto]
gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. 230613]
Length = 137
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+AISDP A + RK E+ + + GLP
Sbjct: 1 MRILGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F +I + + WDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTLGPQSEKVLEFCD-LIKEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LD +S
Sbjct: 120 DKVAATYILQGYLDSLS 136
>gi|238018987|ref|ZP_04599413.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313892893|ref|ZP_07826470.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
gi|237864471|gb|EEP65761.1| hypothetical protein VEIDISOL_00849 [Veillonella dispar ATCC 17748]
gi|313442246|gb|EFR60661.1| RNAse H domain protein, YqgF family [Veillonella sp. oral taxon 158
str. F0412]
Length = 139
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I S+D+G++ IG+A SD A + R + + L I + ++G+P
Sbjct: 1 MRIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELIAEYEVHELVVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +
Sbjct: 61 KNMNGTKGERAEKTEEFVEKM-KEVIDLPVSYWDERLSTVMAERQLIAADVSRKKRKSVI 119
Query: 137 DSIAAALILQEVLDRISFLE 156
D +AA +ILQ LDR+ F +
Sbjct: 120 DKMAAVVILQGYLDRLQFNK 139
>gi|269798239|ref|YP_003312139.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282850477|ref|ZP_06259856.1| RNAse YqgF [Veillonella parvula ATCC 17745]
gi|269094868|gb|ACZ24859.1| Holliday junction resolvase YqgF [Veillonella parvula DSM 2008]
gi|282579970|gb|EFB85374.1| RNAse YqgF [Veillonella parvula ATCC 17745]
Length = 139
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I S+D+G++ IG+A SD A + R + + L I+ + ++G+P
Sbjct: 1 MRIMSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +
Sbjct: 61 KNMNGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVI 119
Query: 137 DSIAAALILQEVLDRISFLE 156
D +AA +ILQ LDR+ F +
Sbjct: 120 DKMAAVVILQGYLDRLQFNK 139
>gi|296445897|ref|ZP_06887848.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
gi|296256565|gb|EFH03641.1| Holliday junction resolvase YqgF [Methylosinus trichosporium OB3b]
Length = 160
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+E+L L + +D+GTK IGLA+SD RR A P + R K T A L + +
Sbjct: 7 TVEELAALLPAKGRLMGLDVGTKTIGLALSDVERRLASPLETIRRGKFTSDAERLGALVA 66
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
+IAA I+GLPLNM+GSEGPR +TRAF+ + + + + FWDERL+T + + L+
Sbjct: 67 QFDIAALIVGLPLNMDGSEGPRAQATRAFMR-NLGARFALRYAFWDERLSTAAVTRELLA 125
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ SR KR VD +AAA ILQ LDR+ L S
Sbjct: 126 QDASRAKRAAVVDRMAAAYILQGALDRLRRLAS 158
>gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681]
gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681]
Length = 138
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D G +RIG+A+SD A + R+ ++ + + + ++GLP
Sbjct: 1 MKVMGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR F + + + +P WDERLTT SA++ L++ +VSRKKR Q V
Sbjct: 61 KNMNGTVGPRGEICIEFAN-RLKELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA+LILQ LD S
Sbjct: 120 DKLAASLILQNYLDAHS 136
>gi|260881084|ref|ZP_05403565.2| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
gi|260849464|gb|EEX69471.1| putative holliday junction resolvase [Mitsuokella multacida DSM
20544]
Length = 138
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 72/138 (52%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ S+D+G + IG+A+SD A + RK + L + + + GL
Sbjct: 1 MKRYMSLDIGDRTIGIAVSDLLGLTAQGVETIRRKSLADDLKRLGELMQAYETKSLVSGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+G+EG R + F+ + V FWDERL+TV+A + LI+ +VSR+KR +
Sbjct: 61 PKNMDGTEGDRCAIVKEFMAEVKKAYPDVEVFFWDERLSTVAATRSLIEADVSRRKRKKV 120
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD
Sbjct: 121 IDKMAAVFILQGFLDSKR 138
>gi|302382947|ref|YP_003818770.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
gi|302193575|gb|ADL01147.1| Holliday junction resolvase YqgF [Brevundimonas subvibrioides ATCC
15264]
Length = 173
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
+L + DL + P+ +DLG IG+A SD R A P + + K T A L
Sbjct: 10 PVLNLTDLAAACPPDTAWMGLDLGETTIGVATSDTSRMIASPLELIRKSKFTAEAHALFR 69
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ ++A +IGLP+NM+G+EGPR S RAF +DR V FWDERL+T + ++
Sbjct: 70 LMDHRKVSALVIGLPVNMDGTEGPRAQSCRAFAR-NLDRIRPVNVAFWDERLSTSAVERF 128
Query: 122 LI-DMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
LI ++++SRK+R VD AAA ILQ LDR+
Sbjct: 129 LIDELDLSRKRRAGVVDRTAAAWILQGALDRVRH 162
>gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
Length = 142
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 79/142 (55%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I S+D+G++ IG+A+SD A + + + L N+ F+IG+P
Sbjct: 1 MRIMSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNMNG++G R T F + +P+ FWDERLTTV AQ+ LI+ +VSRKKR + +
Sbjct: 61 LNMNGTKGMRAEQTEKFAEALAAAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVI 120
Query: 137 DSIAAALILQEVLDRISFLESS 158
D +AA +IL+ L +SF
Sbjct: 121 DKMAAVVILEGYLQHLSFKNRG 142
>gi|302391206|ref|YP_003827026.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
gi|302203283|gb|ADL11961.1| Holliday junction resolvase YqgF [Acetohalobium arabaticum DSM
5501]
Length = 138
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D G KRIG A SD A + + + E+ S I ++ ++GL
Sbjct: 1 MSRILGLDFGDKRIGAATSDALGWTAQGKKVIQNTSWEEVVAEINSLIEQYDVGKVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR T FV + ++ P + WDERL+T +A++ L+ +VSR KR
Sbjct: 61 PKNMNGTLGPRAEKTLDFVEQ-LKEEIEPPIITWDERLSTAAAERTLLKADVSRAKRKDV 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD S
Sbjct: 120 IDKMAAVVILQSYLDAQS 137
>gi|86749549|ref|YP_486045.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
gi|146325600|sp|Q2IXC6|RUVX_RHOP2 RecName: Full=Putative Holliday junction resolvase
gi|86572577|gb|ABD07134.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris HaA2]
Length = 160
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M IL + + + +DLGTK IG+A+SDP RR A + RK T A
Sbjct: 1 MPALILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ N F++GLPLNM+GSEGPRV STRAF N R +P WDERL+T +
Sbjct: 61 LLALAAGRNACGFVLGLPLNMDGSEGPRVQSTRAFARNF-ARLTELPIGLWDERLSTAAV 119
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
++ LI +VSR KR + +D AA ILQ LDR++ L
Sbjct: 120 ERELIANDVSRAKRAKIIDEHAAIYILQGALDRLATLNR 158
>gi|168702140|ref|ZP_02734417.1| hypothetical protein GobsU_21610 [Gemmata obscuriglobus UQM 2246]
Length = 169
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
S P + +D GTKRIG+A+ DP R A P + A
Sbjct: 10 SFPPRGALLGVDYGTKRIGVAVCDPDRVIASPVGTQANDATREP--YFRDLCARSKFAGV 67
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLPL+ +G E P RAF + +P V WDER T+ +A+ L+ ++RKK
Sbjct: 68 VVGLPLHASGEESPMSGEARAFARW-LSDLTGLPVVMWDERHTSFAAESALLGAGLTRKK 126
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R +KVD +AA +ILQ +D S
Sbjct: 127 RKEKVDRVAAQMILQTFIDAGS 148
>gi|291548156|emb|CBL21264.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. SR1/5]
Length = 150
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
+ +D G+K +G+A+SDP A + RK K+ +T + I+ + ++
Sbjct: 1 MRVLGLDYGSKTVGVAVSDPLGLTAQGVETVWRKQENKLRRTLARIEEIISEYQVTEIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R + F ++++ +P V WDERLTT++A + L + V ++ R
Sbjct: 61 GYPKNMNNTVGERAEKSLEFKEM-LEKRTGLPVVMWDERLTTMAADRTLEETGVHKEDRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159
Q +D +AA ILQ LD ++ +
Sbjct: 120 QYLDQVAAVFILQGYLDAAAYRREQQ 145
>gi|259502866|ref|ZP_05745768.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169233|gb|EEW53728.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 147
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SDP A + + + + + E +A F++G
Sbjct: 1 MRLLGLDVGSKTVGVAVSDPLGWTAQAVEIIPIDEDAEVFGLDRVAELVHKEQVAGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+
Sbjct: 61 LPKNMNNTEGPRVAASKHYGELLQERFPQLPIDFQDERLTTVEAHRMLVEEADISRAKQK 120
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA ILQ LDR
Sbjct: 121 KVIDEVAATFILQSYLDR 138
>gi|226324641|ref|ZP_03800159.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
gi|225207089|gb|EEG89443.1| hypothetical protein COPCOM_02426 [Coprococcus comes ATCC 27758]
Length = 143
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
I +D GTK +G+A+SDP A + RK K+ +T + S T + F+
Sbjct: 1 MMRIMGLDYGTKTVGVAVSDPLGITAQAVETVTRKDENKLRKTLARIESLATEYGVEKFV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IG P +MN G R F + R+ + V WDERLTTV A++ L++ V R+ R
Sbjct: 61 IGFPKHMNNDIGERAEKALEFGEM-LKRRTGIEIVMWDERLTTVEAERTLMESGVRRENR 119
Query: 133 IQKVDSIAAALILQEVLDRI 152
Q VD IAA ILQ LD +
Sbjct: 120 KQYVDQIAAVFILQGYLDSL 139
>gi|114570258|ref|YP_756938.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
gi|114340720|gb|ABI66000.1| Holliday junction resolvase YqgF [Maricaulis maris MCS10]
Length = 151
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 6/156 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ +EDL P+ P+ ++D G+K IG+A R + P + R K T A +
Sbjct: 1 MPIVTLEDL-----PDGPLIALDPGSKTIGVAACGASRGLSTPVETIKRTKFTADAERVF 55
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + A ++GLP+NM+GSEGPRV S RA + R +P F DERL+T A++
Sbjct: 56 ALLDERQAVAIVMGLPVNMDGSEGPRVQSVRAMAR-NLMRLRDLPIAFQDERLSTFEAEE 114
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
LI V R KR +D+ AAA ILQ LDR+ L
Sbjct: 115 KLISAGVRRDKRKDIIDAHAAANILQSALDRLEMLR 150
>gi|313896256|ref|ZP_07829809.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975055|gb|EFR40517.1| RNAse H domain protein, YqgF family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 142
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 72/140 (51%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
S+D+G IG+A+SD A + R L + + + A + GL
Sbjct: 1 MNRYMSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTPAADFERLGTLMRDYEVDALVAGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R RAF+ R V +WDERL+TV+A + L++ +VSRKKR +
Sbjct: 61 PKHMNGDEGTRCEMVRAFMAEAAQRFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKV 120
Query: 136 VDSIAAALILQEVLDRISFL 155
+D +AA ILQ LDR L
Sbjct: 121 IDKMAAVYILQGFLDRQRNL 140
>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 138
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLGT+ IG+A+SD A + R L + E + AF++G P
Sbjct: 1 MRIMGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G R ++ AF + WDERL+TV+A+++LID +++RKKR + +
Sbjct: 61 KNMNGTIGERGKASEAFSKLLQTEFPDAKITLWDERLSTVAAEKVLIDADLTRKKRKKVI 120
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD +
Sbjct: 121 DMMAAVVILQNYLDSLR 137
>gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125]
gi|32130069|sp|Q9KDE4|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase
gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125]
Length = 140
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+D+GTK IG+A+SD A R + + S + + +IG
Sbjct: 1 MRTLGLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+GS GP + F + R V V WDERLTT +A+++LI +VSRKKR
Sbjct: 61 LPKNMDGSIGPSGERSETFAA-ELRRYVPCEIVMWDERLTTTAAERMLISADVSRKKRKS 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 120 VIDKMAAVMILQGYLDR 136
>gi|84684665|ref|ZP_01012565.1| hypothetical protein 1099457000245_RB2654_02114 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667000|gb|EAQ13470.1| hypothetical protein RB2654_02114 [Rhodobacterales bacterium
HTCC2654]
Length = 155
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIG 74
+A +D G K IG+A+SD R+ A P + R KK TQ A L++ + I+ ++G
Sbjct: 16 MTALAGLDYGDKTIGVAVSDGMRQVATPLDTIRRGKKFTQDAEALMAILDERAISGLVLG 75
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+G+EGPR TRAF + R P FWDERL+TV+A++ L++ + SR KR
Sbjct: 76 LPRNMDGTEGPRCQKTRAFAR-NLSRLTERPITFWDERLSTVAAERALLEADTSRAKRSG 134
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA ILQ LDR+ L
Sbjct: 135 VIDHVAAGYILQGALDRMRHL 155
>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
Length = 139
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 78/135 (57%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLGT+ IG+++SD A + RK + L + E + F++G P
Sbjct: 1 MRIMGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNGS G R ++ F + +R +P V WDERL+TV+A+++LI+ ++ RKKR + +
Sbjct: 61 KNMNGSIGDRARASEEFKTILEERFPSIPVVLWDERLSTVAAEKVLIEADLQRKKRKKII 120
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ LD
Sbjct: 121 DMMAAVVILQNYLDS 135
>gi|75676194|ref|YP_318615.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
gi|146325584|sp|Q3SR28|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase
gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 1 MS--ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M +L + + + +DLGTK IG+A+SDP RR A + RK T A
Sbjct: 1 MPASVLPLVEAAAHWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAAR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
LL+ FI+GLP+NM+GSEGPR STRAF + R WDERL+T +
Sbjct: 61 LLAIAGERRAEGFILGLPINMDGSEGPRAQSTRAFAR-NLARLTDFAIGLWDERLSTAAV 119
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ LI +++SR +R + +D AA ILQ LDR++ + G
Sbjct: 120 ERELIGLDMSRARRAKVIDEHAAIFILQGALDRLATQRRTSG 161
>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
Length = 139
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 1 MRIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMNG+ GP+ FV + + + +P + WDERLTTV A+++LI+ ++SR KR +
Sbjct: 61 KNMNGTLGPQGQKVVRFVEH-LKEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 120 IDKLAAVLILQNYLDS 135
>gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii
NCIMB 8052]
gi|189046092|sp|A6LSF8|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase
gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB
8052]
Length = 138
Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLG+K IG+A+SDP A + R + E+ F + +IGLP
Sbjct: 1 MRILGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP AF +I+ ++ V FWDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTIGPSGEIAMAFGK-VIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +A+ ILQ LD IS
Sbjct: 120 DKVASTYILQGYLDMIS 136
>gi|291087071|ref|ZP_06345320.2| putative Holliday junction resolvase [Clostridium sp. M62/1]
gi|291076386|gb|EFE13750.1| putative Holliday junction resolvase [Clostridium sp. M62/1]
Length = 175
Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K G+A+SDP A +VRK K+ QT + I I A ++
Sbjct: 36 MRIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVL 95
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R T +F ++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 96 GYPKNMNNTAGERAEKTESFKEM-LERRTGKPVILWDERLTTIAAERMLMESGVRRENRK 154
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AAALILQ LD
Sbjct: 155 AVIDKVAAALILQGYLDSQR 174
>gi|315500169|ref|YP_004088972.1| holliday junction resolvase yqgf [Asticcacaulis excentricus CB 48]
gi|315418181|gb|ADU14821.1| Holliday junction resolvase YqgF [Asticcacaulis excentricus CB 48]
Length = 167
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+IL I +L +L P + + +DLG K IG+A+SD P + + K TQ A LL
Sbjct: 1 MAILDITELKAALPPRRALIGLDLGEKTIGVAVSDISLSIGSPLELIKKSKFTQEAERLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK----------VYVPFVFWD 110
+ + +IGLP+NM+G+EGPR S RAF N++ +P FWD
Sbjct: 61 LLMKQREASGLVIGLPVNMDGTEGPRCQSVRAFARNLLRLPAEKFAAAGLEPDLPIAFWD 120
Query: 111 ERLTTVSAQQILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
ER ++ + LI + +++R KR + +D AAA ILQ LDRI
Sbjct: 121 ERWSSSVMNRFLIEEADLTRAKRAEVIDRSAAAYILQGALDRIR 164
>gi|160940886|ref|ZP_02088226.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
gi|158436130|gb|EDP13897.1| hypothetical protein CLOBOL_05778 [Clostridium bolteae ATCC
BAA-613]
Length = 171
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
N I +D G+K +G+A+ DP A + R K+ QT + I I +
Sbjct: 30 NMRIMGLDFGSKTVGVAVCDPLGITAQTVETITRASENKMRQTLARIEQLIGEYEIERIV 89
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G R T+ F ++R+ + + WDERLTTV+A+++LI+ V R+ R
Sbjct: 90 LGYPKNMNNTVGERGEKTQEF-KAALERRTGLEVILWDERLTTVAAERVLIESGVRRENR 148
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+ VD IAAA+ILQ LD + +
Sbjct: 149 KKSVDQIAAAMILQGYLDSLQY 170
>gi|302389909|ref|YP_003825730.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
gi|302200537|gb|ADL08107.1| Holliday junction resolvase YqgF [Thermosediminibacter oceani DSM
16646]
Length = 145
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G KRIG+A+SD A + R V + + + + IIGLP
Sbjct: 1 MRILGLDVGNKRIGVAVSDELGITAQGVGVIERGDVKRDIERISEIVKRYQVKKVIIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNMNG+ GP+ + F + + + +WDERL+TV+A+++LID ++SR+KR +
Sbjct: 61 LNMNGTLGPQGQLVKDFGE-KLRHSLNLDVEYWDERLSTVTAEKVLIDADISRRKRKGVI 119
Query: 137 DSIAAALILQEVLDRISFLE 156
D ++A +ILQ LD S ++
Sbjct: 120 DKLSAIVILQSFLDSRSNID 139
>gi|299535708|ref|ZP_07049029.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
gi|298728908|gb|EFI69462.1| putative Holliday junction resolvase [Lysinibacillus fusiformis
ZC1]
Length = 138
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SD A + + + I F++G
Sbjct: 1 MRIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYTITEFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q
Sbjct: 61 FPKNMNNTVGPRGEASENY-KKLLEEHFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKMAAVMILQGYLDSKN 138
>gi|304320050|ref|YP_003853693.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
gi|303298953|gb|ADM08552.1| putative endonuclease [Parvularcula bermudensis HTCC2503]
Length = 158
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P P+ +D G+K IG+A+S P RR A P + R K + A L + + IIG
Sbjct: 13 PKGPLLGLDPGSKTIGVAVSTPERRLATPVTVIRRTKFGKDAEALFALAEARGVVGLIIG 72
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+PLNM+GSEGPR S R F + ++ +P +WDERL++V+A++ L+ + SR +R +
Sbjct: 73 VPLNMDGSEGPRAQSARTFGR-NLSQRGPLPVAYWDERLSSVAAERALLATDTSRARRAE 131
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA ILQ LDR++
Sbjct: 132 VIDAHAATHILQGALDRLA 150
>gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris PB013-T2-3]
Length = 147
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SDP A + + + + + E +A F++G
Sbjct: 1 MRLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN +EGPRV +++ + + +R +P F DERLTTV A ++L+ + ++SR K+
Sbjct: 61 LPKNMNNTEGPRVAASKHYGELLQERFPQIPIDFQDERLTTVEAHRMLVEEADISRAKQK 120
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA ILQ LDR
Sbjct: 121 KVIDEVAATFILQSYLDR 138
>gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans
Z-2901]
gi|146325559|sp|Q3AEN4|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase
gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 138
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+G K+IG+A+SD A + R + + E+ I ++ +IG P
Sbjct: 1 MKVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR + F + P FWDERL+TV A+++LI ++SR+KR + +
Sbjct: 61 RNMNGTAGPRAELVKRFARELYKFTGIKPV-FWDERLSTVEAEKLLISGDISRRKRKKVI 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA LIL L+ S
Sbjct: 120 DKLAATLILSGYLNYKS 136
>gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
gi|164602950|gb|EDQ96415.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
Length = 141
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SD A + R+ + EL + I + + GLP
Sbjct: 4 GRIMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ +I + + FWDERLTTV+A++ LI+ +VSRKKR + +
Sbjct: 64 KNMNGTLGPQGEKVLKLCE-LIKEETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKKVI 122
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD S
Sbjct: 123 DMLAAVIILQGYLDSKS 139
>gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122318867|sp|Q0AZP9|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase
gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 141
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLG KRIG+A SDP A L RK + + L + ++GLP
Sbjct: 1 MRIMGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNMNG+ GP+ T+ F + + +P FWDERL++ SA+++L++ ++SRK+R + +
Sbjct: 61 LNMNGTMGPKALETQEFAR-ALQEALKIPVDFWDERLSSKSAERVLLEADLSRKRRKELI 119
Query: 137 DSIAAALILQEVLD 150
D IAA ILQ LD
Sbjct: 120 DKIAAVHILQAYLD 133
>gi|328474865|gb|EGF45665.1| Holliday junction resolvase-like protein [Listeria monocytogenes
220]
gi|332311944|gb|EGJ25039.1| Putative Holliday junction resolvase [Listeria monocytogenes str.
Scott A]
Length = 135
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226695311|sp|B0K996|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 139
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 1 MRIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMNG+ GP+ FV + + +P + WDERLTTV AQ++LI+ ++SR KR +
Sbjct: 61 KNMNGTLGPQGQKVMRFVEH-LKEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 120 IDKLAAVLILQNYLDS 135
>gi|295092198|emb|CBK78305.1| conserved hypothetical protein TIGR00250 [Clostridium cf.
saccharolyticum K10]
Length = 140
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K G+A+SDP A +VRK K+ QT + I I A ++
Sbjct: 1 MRIMGLDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R T +F ++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 61 GYPKNMNNTAGERAEKTESFKEM-LERRTGKPVILWDERLTTIAAERMLMESGVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AAALILQ LD
Sbjct: 120 AVIDKVAAALILQGYLDSQR 139
>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
Length = 139
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 1 MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMNG+ GP+ FV + + + +P + WDERLTTV A+++LI+ ++SR KR +
Sbjct: 61 KNMNGTLGPQGQKVVRFVEH-LKKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 120 IDKLAAVLILQNYLDS 135
>gi|153854408|ref|ZP_01995686.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
gi|149752934|gb|EDM62865.1| hypothetical protein DORLON_01681 [Dorea longicatena DSM 13814]
Length = 146
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SDP A + RK K+ +T + + I + ++
Sbjct: 3 MRIMGLDYGSKTVGVAVSDPLGITAQGVETICRKDENKLRKTCARIEALIEEYQVTKIVL 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MN G R + AF + R+ + V WDERLTTV A++ LI+ V R+ R
Sbjct: 63 GLPKHMNNDIGDRAEKSMAFGEM-LKRRTGLEVVMWDERLTTVEAERTLIENKVRREDRK 121
Query: 134 QKVDSIAAALILQEVLDRISF 154
+ +D IAA ILQ LD ++
Sbjct: 122 KYIDKIAAVFILQGYLDSLAH 142
>gi|331085955|ref|ZP_08335038.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406878|gb|EGG86383.1| Holliday junction resolvase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 151
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+AISDP A + RK K+ +T + + + + ++
Sbjct: 1 MRIMGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R + F ++R+ +P WDERLTTV A++ LI+ NV R+ R
Sbjct: 61 GFPKNMNNTVGDRAEKSLEFKEM-LERRTALPVTMWDERLTTVEAERTLIENNVRREDRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
+ VD IAA ILQ LD + F + S
Sbjct: 120 KYVDKIAAVFILQGYLDSVYFRQKS 144
>gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88]
gi|32130019|sp|Q896F1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase
gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88]
Length = 138
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+AISDP A + R + E+ + + GLP
Sbjct: 1 MRILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F + +++ + WDERLTTV+A + +I+ ++SR KR + V
Sbjct: 61 KNMNGTLGPQSEKVTEFCDI-LKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIV 119
Query: 137 DSIAAALILQEVLDRI 152
D IAA ILQ LD +
Sbjct: 120 DKIAAIYILQGYLDSV 135
>gi|291563945|emb|CBL42761.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SS3/4]
Length = 144
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SD A + RK K+ +T + I + ++
Sbjct: 1 MRILGLDFGSKTVGVAVSDGLLLTAQGVETIERKDENKLRKTCARIEELIAEYEVTEIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NM+ +EG RV T+AF ++R+ +P +WDERLTTV+A+QIL++ V R+ R
Sbjct: 61 GLPKNMDNTEGERVEKTKAFGEM-LERRTGLPVHYWDERLTTVAAEQILMESGVRRENRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 120 AVIDKVAAGLILQGYLD 136
>gi|217964351|ref|YP_002350029.1| hypothetical protein LMHCC_1067 [Listeria monocytogenes HCC23]
gi|284801892|ref|YP_003413757.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284995034|ref|YP_003416802.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|217333621|gb|ACK39415.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|284057454|gb|ADB68395.1| hypothetical protein LM5578_1647 [Listeria monocytogenes 08-5578]
gi|284060501|gb|ADB71440.1| hypothetical protein LM5923_1599 [Listeria monocytogenes 08-5923]
gi|307571083|emb|CAR84262.1| holliday junction resolvase, putative [Listeria monocytogenes L99]
Length = 135
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|13470868|ref|NP_102437.1| hypothetical protein mlr0681 [Mesorhizobium loti MAFF303099]
gi|32130057|sp|Q98M90|RUVX_RHILO RecName: Full=Putative Holliday junction resolvase
gi|14021611|dbj|BAB48223.1| mlr0681 [Mesorhizobium loti MAFF303099]
Length = 166
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 78/147 (53%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + +A +DLG K IG+A+SD G FAHPRP ++R+K + A LL+ + EN+ A
Sbjct: 5 LADGRTLAGLDLGDKTIGVAVSDRGFAFAHPRPVIMRRKFSLDAAVLLALLKKENVGAVA 64
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP+NM+GSEGPR +RAFV NM + +PFVFWDERL+TV+A++ LI+M+ SR KR
Sbjct: 65 IGLPINMDGSEGPRAQKSRAFVRNM-AQLSDLPFVFWDERLSTVAAERTLIEMDFSRAKR 123
Query: 133 IQKVDSIAAALILQEVLDRISFLESSK 159
K+DS AAA ILQ VLDR+ L+S+
Sbjct: 124 AGKIDSAAAAFILQGVLDRLQSLDSAA 150
>gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI]
gi|189046102|sp|A5D3C3|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase
gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI]
Length = 154
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGL 75
I +DLG K+IG+A+SDP A + K + + + + ++GL
Sbjct: 1 MRIMGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNGS GPR RAF + + +P WDER+TT+ A+++LI+ ++SR +R Q
Sbjct: 61 PRNMNGSFGPRAERARAFAGC-LAGALNLPVELWDERMTTLEAEKLLIEADLSRARRRQV 119
Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
+D +AA LILQ LD G
Sbjct: 120 IDKMAAVLILQSFLDSQGRPRREAG 144
>gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
gi|172044263|sp|A4J2L0|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase
gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
Length = 137
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SDP A + R + + L I+ ++ ++G+P
Sbjct: 1 MRIMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G + AF+ + ++ +P WDERL+TV+A+++LI +VSR KR + +
Sbjct: 61 KNMNGTVGSQGEKVLAFIEKVKEKI-DLPIKTWDERLSTVAAEKMLIQADVSRGKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AAA+ILQ LD
Sbjct: 120 DKMAAAVILQGYLDS 134
>gi|295109588|emb|CBL23541.1| conserved hypothetical protein TIGR00250 [Ruminococcus obeum
A2-162]
Length = 140
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SDP A + RK K+ QT + I + ++
Sbjct: 1 MRILGLDYGSKTVGVAVSDPLGLTAQKVETIWRKQENKLRQTLARIEELIAEYEVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R F + ++ + + WDERLTTV A + LI+ V R+ R
Sbjct: 61 GFPKNMNNTVGERAEKALEFGEM-LKKRTGLEVIMWDERLTTVEADRTLIEAGVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q +D IAA ILQ LD +S
Sbjct: 120 QYLDGIAAVFILQGYLDSLS 139
>gi|126653902|ref|ZP_01725749.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
gi|126589627|gb|EAZ83766.1| Holliday junction resolvase-like protein [Bacillus sp. B14905]
Length = 138
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SD A + + + I F++G
Sbjct: 1 MRIMGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITEFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSRKKR Q
Sbjct: 61 FPKNMNNTVGPRGEASENY-KTLLEETFSLPVKLWDERLTTMAAERMLIEADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKMAAVMILQGYLDSKN 138
>gi|71083767|ref|YP_266487.1| putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1062]
gi|91763197|ref|ZP_01265161.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
gi|146325587|sp|Q4FLQ5|RUVX_PELUB RecName: Full=Putative Holliday junction resolvase
gi|71062880|gb|AAZ21883.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1062]
gi|91717610|gb|EAS84261.1| Putative Holliday junction resolvase [Candidatus Pelagibacter
ubique HTCC1002]
Length = 151
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ IED +DLG+KRIG++I D + A P + + + EL
Sbjct: 1 MITIEDFKIKHTNKVRFIGLDLGSKRIGVSICDERQSIATPFKTINKTNTNELIDELKII 60
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I NI I+G P+NM+GS G S I + + +P + WDERL+TV A +
Sbjct: 61 IKDNNIGGIIVGNPVNMDGSLGRSAQSVNDVAS-NISKSIDLPVILWDERLSTVGAFNLS 119
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
++V+ KR++ +D AAA ILQ +D ++
Sbjct: 120 SLLDVNVSKRVKTIDQNAAAFILQGAIDFLNN 151
>gi|253580719|ref|ZP_04857983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848090|gb|EES76056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 140
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
+ +D G+K +G+AISDP A + RK + QT + ++ ++ ++
Sbjct: 1 MRVLGLDYGSKTVGVAISDPLGITAQGVETIWRKQENHLRQTLARIEELVSEYHVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R + F ++R+ + + WDERLTTV A + L++ +V R+ R
Sbjct: 61 GYPKNMNNTIGERAQKSLEFKEM-LERRTGLEVIMWDERLTTVEANRTLMEASVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q +D +AA ILQ LD +S
Sbjct: 120 QYLDQLAAVFILQGYLDSLS 139
>gi|254460515|ref|ZP_05073931.1| conserved hypothetical protein TIGR00250 [Rhodobacterales bacterium
HTCC2083]
gi|206677104|gb|EDZ41591.1| conserved hypothetical protein TIGR00250 [Rhodobacteraceae
bacterium HTCC2083]
Length = 160
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+D +L + + +DLGTK IG+++SD A P + R K T A L
Sbjct: 1 MIFETIDDFAAALPRARALVGLDLGTKTIGVSVSDGLLSVASPLETIKRTKYTADAARLE 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I I ++GLP NM+GSEGPR STRAF + R+ +P +WDERL+TV+A++
Sbjct: 61 QIIEARYIGGIVLGLPFNMDGSEGPRCQSTRAFAR-NLARQSELPITYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSK 159
L+ + SR++R + +D++AAA ILQ LDR+S +
Sbjct: 120 ALLAADASRRRRAEVIDNVAAAYILQGALDRLSHIRREA 158
>gi|227529702|ref|ZP_03959751.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
gi|227350368|gb|EEJ40659.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
ATCC 49540]
Length = 147
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SDP A + + + + + +A F++G
Sbjct: 1 MRLLGLDVGSKTVGIAVSDPLGWTAQAVEIIPINEDEEIFGIDRVAEIVKQRQVAGFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN +EGPRV ++ + + R +P F DERLTTV A ++L+ + ++SR K+
Sbjct: 61 LPKNMNNTEGPRVEASHHYGELLKKRFPSIPVDFQDERLTTVEAHRMLVEEADISRAKQK 120
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA ILQ LDR
Sbjct: 121 KVIDEVAATFILQSYLDR 138
>gi|89895164|ref|YP_518651.1| hypothetical protein DSY2418 [Desulfitobacterium hafniense Y51]
gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium
hafniense DCB-2]
gi|146325570|sp|Q24UT5|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase
gi|254767513|sp|B8FQB9|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase
gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense
DCB-2]
Length = 142
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D G + IG+A+SD A + R + EL + + + ++G P
Sbjct: 1 MRIMGLDFGERTIGVAVSDAMLLTAQGVKTIRRS--PKELEELKTMLQDYEVDHIVLGYP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +T F + + +P WDERL+T+ AQ+ L++ +VSR KR Q +
Sbjct: 59 KNMNGTLGPRAQATEEFAQI-LKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVI 117
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LD I
Sbjct: 118 DKMAAVFILQGYLDYIR 134
>gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Bacillus tusciae DSM 2912]
Length = 157
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G RIG+A+SDP A L + I + ++GL
Sbjct: 1 MSRILGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+ S G + T F + +V VP WDERLTTV A++ LID + R +R +
Sbjct: 61 PRNMDASLGAQGRYTEEFAE-KLRHRVRVPVDLWDERLTTVVAEKTLIDAGLRRARRKKV 119
Query: 136 VDSIAAALILQEVLD 150
VD +AA ++LQ LD
Sbjct: 120 VDQVAATVLLQSYLD 134
>gi|289434782|ref|YP_003464654.1| holliday junction resolvase, putative [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289171026|emb|CBH27568.1| holliday junction resolvase, putative [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 135
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTTAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
X514]
gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
gi|226695312|sp|B0K0Q3|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
Length = 139
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 1 MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
N+NG+ GP+ FV + + + +P + WDERLTTV A+++LI+ ++SR KR +
Sbjct: 61 KNLNGTLGPQGQKVVRFVEH-LKEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 120 IDKLAAVLILQNYLDS 135
>gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761198|ref|ZP_04759286.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241374105|gb|EER63602.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 179
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 2 SILLIED----LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57
+IL ++ ++L +A +D+GTK IGLA+ D A P + RKK T
Sbjct: 24 NILKKQEELRLFQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLE 83
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
L F+ + + +IGLPLN++GS+ PR S RAF N+ + +P + WDER +T +
Sbjct: 84 LLRQFVEKQQVKGLVIGLPLNLDGSDSPRTQSVRAFAKNV--APLSLPVLMWDERWSTKA 141
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ L++ + SR +R + VD +AAA ILQ +D +
Sbjct: 142 VTRTLLEADASRARRSEVVDKMAAAYILQGAIDSFAM 178
>gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
Length = 139
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SDP A + +K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVNKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|116872931|ref|YP_849712.1| holliday junction resolvase, putative [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116741809|emb|CAK20933.1| holliday junction resolvase, putative [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 135
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDEKRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D
Sbjct: 61 NMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +ILQ LD +
Sbjct: 120 KLAAVMILQSYLDTTN 135
>gi|307265209|ref|ZP_07546768.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919831|gb|EFN50046.1| Holliday junction resolvase YqgF [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 139
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 1 MRIMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NM+G+ GP+ FV + + +P + WDERLTTV AQ++LI+ ++SR KR +
Sbjct: 61 KNMSGTLGPQGQKVVRFVEH-LKEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 120 IDKLAAVLILQNYLDS 135
>gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
Length = 140
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SD A + R E+ I + + + GLP
Sbjct: 4 GRIMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ + F +I + + FWDERLTTV+A++ LI +VSRKKR +
Sbjct: 64 KNMNGTVGPQGEKVQKFCE-LIKEETGLEIEFWDERLTTVAAEKTLITADVSRKKRKNVI 122
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 123 DMMAAVLILQGYLD 136
>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
14863]
gi|62900963|sp|Q67MW4|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 144
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SD A + R+ + Q L + +++G+P
Sbjct: 1 MRIGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR TRAF+ + +P WDERL+T++A+++L++ +VSR +R + +
Sbjct: 61 RNMNGTYGPRAELTRAFME-RLAGHSGLPVEAWDERLSTMAAERVLLEADVSRARRRKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AAA+ILQ LD
Sbjct: 120 DKMAAAVILQGYLD 133
>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
Length = 148
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +D+G +RIG+A+SD A P + +Q + + + ++GLP
Sbjct: 4 QRLLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L + G GP+ TR+F ++R+V +P + +DER TT A+Q+L +M V +KR Q++
Sbjct: 64 LTLRGEIGPQAEQTRSFAQ-ELERQVGLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQI 122
Query: 137 DSIAAALILQEVLDRISF 154
D +AA++ILQ+ LD I
Sbjct: 123 DQVAASIILQDYLDHIRN 140
>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 140
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +DLG K IG+AISDP A + R + +L + +IGL
Sbjct: 1 MKRILGLDLGQKTIGVAISDPLGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP AF +++ + + FWDERLTTV+A + +++ ++SR KR +
Sbjct: 61 PKNMNGTIGPSGEIAMAFGK-LLEEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKI 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +A+ ILQ LD IS
Sbjct: 120 VDKVASTYILQGYLDMIS 137
>gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus
SAFR-032]
gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|167012693|sp|A8FFM7|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase
gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bacillus pumilus SAFR-032]
gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 138
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +DLGTK +G+AISD A + + L ++ ++G
Sbjct: 1 MRILGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR ++++F +++ VP V WDERL+T++A+++LI +VSR+KR +
Sbjct: 61 FPKNMNGTVGPRGEASQSFAK-VLENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 120 VIDKMAAVMILQGYLDSLN 138
>gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile
QCD-23m63]
gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
Length = 141
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SD A + R + EL + I + + + GLP
Sbjct: 4 GRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F + + + FWDERL+TV+A++ L++ +VSR+KR + +
Sbjct: 64 KNMNGTLGPQGEKVIKFCELVKEET-GIDVEFWDERLSTVAAERSLLEADVSRQKRKKVI 122
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 123 DMLAAVIILQGYLD 136
>gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
Length = 166
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS 61
+L + + + +DLGT+ IG+A+SDP RR A + RK T A LL+
Sbjct: 4 PVLPLIEAAAHWPERGALVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLA 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ FI+GLP+NM+GSEGPR STRAF + R + WDERL+T + ++
Sbjct: 64 IAGERHAKGFILGLPINMDGSEGPRAQSTRAFAR-NLARLTDLAIGLWDERLSTAAVERE 122
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
LI +++SR +R + +D AA ILQ LDR++ S G
Sbjct: 123 LIGLDMSRARRARVIDEHAAIFILQGALDRLAAQRRSSG 161
>gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
Length = 145
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +DLGTK IG+A+SD A + RKK A L I + I+GL
Sbjct: 1 MRGLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADALAGLIAKHEVGGIILGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV--FWDERLTTVSAQQILIDMNVSRKKRI 133
P NM+GSEGPR +TRAF N+ R + FWDERL+TV+A++ LI + SRK+R
Sbjct: 61 PRNMDGSEGPRAQATRAFALNLSRRGDFAHLALGFWDERLSTVAAERALIAADTSRKRRS 120
Query: 134 QKVDSIAAALILQEVLDRISFLES 157
+ +D++AA+ ILQ LDR+ L +
Sbjct: 121 EVIDAVAASYILQGALDRLRHLRA 144
>gi|118597226|sp|Q5NPF1|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 2 SILLIED----LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL 57
+IL ++ ++L +A +D+GTK IGLA+ D A P + RKK T
Sbjct: 8 NILKKQEELRLFQEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLE 67
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
L F+ + + +IGLPLN++GS+ PR S RAF N+ + +P + WDER +T +
Sbjct: 68 LLRQFVEKQQVKGLVIGLPLNLDGSDSPRTQSVRAFAKNV--APLSLPVLMWDERWSTKA 125
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ L++ + SR +R + VD +AAA ILQ +D +
Sbjct: 126 VTRTLLEADASRARRSEVVDKMAAAYILQGAIDSFAM 162
>gi|296333169|ref|ZP_06875622.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675325|ref|YP_003866997.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149367|gb|EFG90263.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413569|gb|ADM38688.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 138
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +DLGTK +G+A+SD A + + L I I ++G
Sbjct: 1 MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKEYTIDKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 61 FPKNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 120 VIDKMAAVMILQGYLDSLN 138
>gi|294792100|ref|ZP_06757248.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
gi|294793971|ref|ZP_06759108.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294455541|gb|EFG23913.1| putative Holliday junction resolvase [Veillonella sp. 3_1_44]
gi|294457330|gb|EFG25692.1| putative Holliday junction resolvase [Veillonella sp. 6_1_27]
Length = 136
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G++ IG+A SD A + R + + L I+ + ++G+P NM
Sbjct: 1 MSLDVGSRTIGIACSDALLMTAQGIETIRRTSLEKDFNRLQELISEYEVHELVVGMPKNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG++G R T FV M + +P +WDERL+TV A++ LI +VSRKKR +D +
Sbjct: 61 NGTKGERAEKTEEFVAKM-KEVIDLPVTYWDERLSTVMAERQLIAADVSRKKRKSVIDKM 119
Query: 140 AAALILQEVLDRISFLE 156
AA +ILQ LDR+ F +
Sbjct: 120 AAVVILQGYLDRLQFNK 136
>gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
Length = 155
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + +L + +D GTK IG+A+ D G RFA P L R+K Q E++
Sbjct: 1 MITTAIGEFRAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++ +IGLPLNM+GSE PR + RA N+ D +P + WDER TT +A++
Sbjct: 61 GIIAQRSVRGIVIGLPLNMDGSESPRSQAARAMARNLADLA--LPTLLWDERWTTQAAER 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+I ++SR KR +++D+ AAALILQ +D ++
Sbjct: 119 AMIAQDMSRAKRAERIDAHAAALILQGAIDALA 151
>gi|323483777|ref|ZP_08089157.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323692750|ref|ZP_08106978.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
gi|323402968|gb|EGA95286.1| hypothetical protein HMPREF9474_00906 [Clostridium symbiosum
WAL-14163]
gi|323503192|gb|EGB19026.1| hypothetical protein HMPREF9475_01841 [Clostridium symbiosum
WAL-14673]
Length = 163
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TAL 57
M+I + ++ +K + +D G+K G+A+SDP A + R+ + T
Sbjct: 1 MAICQL--VLLWVKQLMRVLGLDFGSKTTGVAVSDPLGFTAQGLETITREDENKLRRTCA 58
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
+ I I ++G P NMN + G RV T AF ++R+ + + WDERLTT +
Sbjct: 59 RIEELIREYQIETIVLGYPKNMNNTSGERVEKTLAFKEM-LERRTGLSVILWDERLTTTA 117
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
A+QILI+ V R+ R +D +AA+LILQ LD ++
Sbjct: 118 AEQILIESGVRRENRKAVIDKVAASLILQGYLDSLA 153
>gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
Length = 139
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 83/138 (60%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SDP A + +K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLNGLVQEYKVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I++ ++P + DERLTTV+A+++LI+ +VSRKKR
Sbjct: 61 LPKNMNNTSGPRVEASQAYG-TKIEQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|241890070|ref|ZP_04777368.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
gi|241863692|gb|EER68076.1| putative Holliday junction resolvase [Gemella haemolysans ATCC
10379]
Length = 142
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ I +D G+K IG+A+SD A + + + + N+ ++G
Sbjct: 4 KRIMGLDYGSKTIGVAVSDLLGFTAQGIETININEQVKDFKIKRIKELVQEHNVGTIVVG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 64 LPKNMDNSVGFRGEATLYFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRKN 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142
>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium sp. 'sapolanicus']
Length = 136
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ID G KR+G+A+SD A P L + + +EL +I ++ I+G+P
Sbjct: 1 MRILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+GS G R T+AF++ + + +P DERLTT A+ IL++ ++SR +R +
Sbjct: 61 YNMDGSRGKRAEITQAFINF-LKNNLEIPVEIQDERLTTSQAENILLEADLSRSRRKDVI 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AAALILQ LD +
Sbjct: 120 DKLAAALILQSYLDLNN 136
>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
gi|259495706|sp|C5D4Z1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
Length = 138
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIG 74
+ +DLGTK +G+A+SD A + ++ L I + ++G
Sbjct: 1 MRVLGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F +++ + +P + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 FPKNMNGTVGPRAEASQRFAK-LLESEFSLPVILWDERLSTMAAERMLITADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQSYLDS 136
>gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
2228]
Length = 135
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ID G KR+G+A+SD A P L + +E+ +I ++ I+G+P
Sbjct: 1 MRILGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
N++GS G R T+AF++ ++ ++ +P DERLTT AQ IL++ +VSR+ R + +
Sbjct: 61 YNLDGSRGKRAEITQAFINF-LNNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA+LILQ LD +
Sbjct: 120 DKLAASLILQSYLDSL 135
>gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
Length = 140
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 68/137 (49%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G K IG A+SD A + R + I+GLP
Sbjct: 1 MRILALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ +AF + + + WDERL+TV+A++ LI +V R KR Q +
Sbjct: 61 KNMNGTIGPQGEKVKAFASELQNYLAGIEVRLWDERLSTVAAERSLIAADVRRAKRRQVI 120
Query: 137 DSIAAALILQEVLDRIS 153
D +AA ILQ LD +S
Sbjct: 121 DKMAAVFILQGYLDSLS 137
>gi|126698882|ref|YP_001087779.1| putative holliday junction resolvase [Clostridium difficile 630]
gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile
QCD-66c26]
gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP
107932]
gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile
QCD-63q42]
gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC
43255]
gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile
QCD-76w55]
gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile
QCD-97b34]
gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile
QCD-37x79]
gi|260682892|ref|YP_003214177.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260686490|ref|YP_003217623.1| putative holliday junction resolvase [Clostridium difficile R20291]
gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile
QCD-32g58]
gi|118597204|sp|Q18BF1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase
gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile]
gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291]
Length = 141
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+A+SD A + R + EL + I + + + GLP
Sbjct: 4 GRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F + + + FWDERL+TV+A++ L++ +VSR+KR + +
Sbjct: 64 KNMNGTLGPQGEKVIKFCELV-KAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKKVI 122
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 123 DMLAAVIILQGYLD 136
>gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter sp. Re1]
Length = 143
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
I +D+G KR+G+AISD A + RK + + I+ N+ I+G
Sbjct: 1 MRILGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GP + + + + + + FWDERLTT +A++ILI+ +VSR+KR
Sbjct: 61 LPKNMNGTLGPSSEAVENYTK-KLQKAISIDLEFWDERLTTAAAERILIEADVSRQKRKG 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 120 VIDKLAAVLILQSYLDS 136
>gi|212638590|ref|YP_002315110.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
gi|212560070|gb|ACJ33125.1| RNase H-like ribonuclease [Anoxybacillus flavithermus WK1]
Length = 145
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAF 71
+ I +D GTK +G+A+SD A + + L I +
Sbjct: 3 NRHMRILGLDFGTKTLGVAVSDELGWTAQGIETIRIDEEHGEYGFDRLRQLIEQYAVEEI 62
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G P NMNG+ GPR +T+ F + + +P V WDERL+T++A+++LI +VSRKK
Sbjct: 63 VVGFPKNMNGTIGPRGEATQRFAEQV-KQTFSLPVVLWDERLSTMAAERMLIAADVSRKK 121
Query: 132 RIQKVDSIAAALILQEVLD 150
R + +D +AA +ILQ LD
Sbjct: 122 RKKVIDKMAAVMILQSYLD 140
>gi|225387769|ref|ZP_03757533.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
gi|225046130|gb|EEG56376.1| hypothetical protein CLOSTASPAR_01539 [Clostridium asparagiforme
DSM 15981]
Length = 151
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+ DP A +VRK K+ +T + I I ++
Sbjct: 1 MRIMGLDYGSKTVGVAVCDPLGITAQTVETIVRKDENKLRKTLARIEELIGAYEIERIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R ++R+ +P + WDERLTTV+A ++L++ V R+ R
Sbjct: 61 GYPKNMNNTVGERAQKAEEL-KAALERRTGLPVILWDERLTTVAADRVLMESGVRREHRK 119
Query: 134 QKVDSIAAALILQEVLDRISF 154
+ VD IAAA+ILQ LD +SF
Sbjct: 120 ESVDQIAAAMILQGYLDNLSF 140
>gi|311031560|ref|ZP_07709650.1| Holliday junction resolvase-like protein [Bacillus sp. m3-13]
Length = 138
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A + + + L I ++G
Sbjct: 1 MRILGLDVGSKTVGVAISDEMGWTAQGLETIKIDEAIKNLGFKRLKQIIAEYKPEKVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNGS GPR +++ + + K +P ++WDERL+TV+A++IL+ +VSRKKR Q
Sbjct: 61 LPKNMNGSIGPRGEASKHYGEM-LTAKTGLPVIYWDERLSTVAAERILLSADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGYLDS 136
>gi|251798321|ref|YP_003013052.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
gi|247545947|gb|ACT02966.1| Holliday junction resolvase YqgF [Paenibacillus sp. JDR-2]
Length = 138
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D G + IG+A+SD A + +++ + + + ++GLP
Sbjct: 1 MRTMGLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR + AF + + + +P WDERLTTVSA++ L++ +VSRKKR +
Sbjct: 61 KNMNNTIGPRGEISMAFAEQ-LQQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LD
Sbjct: 120 DKMAATLILQNYLDS 134
>gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
Length = 140
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ID G RIG+A+SD AHP + K+V + + +T++++ I+GL
Sbjct: 1 MKRALGIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GS GP RAF + WDERLT+V+AQ+ L + K +
Sbjct: 61 PRNMDGSYGPAAEKVRAFAE-KLRAACGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREV 119
Query: 136 VDSIAAALILQEVLDRISFL 155
+D +AA LILQ LD + L
Sbjct: 120 IDQVAAQLILQGWLDSQALL 139
>gi|40889964|pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase
gi|40889965|pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase
Length = 150
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +DLGTK +G+A+SD A + + L I I ++G
Sbjct: 4 RILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGF 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N NG+ GPR +++ F +++ VP V WDERLTT +A++ LI +VSR+KR +
Sbjct: 64 PKNXNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKV 122
Query: 136 VDSIAAALILQEVLDRISFLES 157
+D AA ILQ LD ++ S
Sbjct: 123 IDKXAAVXILQGYLDSLNEGGS 144
>gi|229918437|ref|YP_002887083.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
gi|229469866|gb|ACQ71638.1| Holliday junction resolvase YqgF [Exiguobacterium sp. AT1b]
Length = 140
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
+ + +D+G+K IG+A+SD A + L FI ++ ++
Sbjct: 1 MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMNG+ GPR ++ AF ++ +P V DERLTT+ A+++LI +VSRKKR
Sbjct: 61 GHPKNMNGTVGPRGEASEAFAEAFTEQT-GLPCVLVDERLTTMQAERMLISADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 120 AVIDKMAAVMILQNYLDR 137
>gi|312898887|ref|ZP_07758275.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
gi|310620049|gb|EFQ03621.1| conserved hypothetical protein TIGR00250 [Megasphaera
micronuciformis F0359]
Length = 138
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 66/134 (49%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G+K IG+A SD A L R+ + L L + + ++G P
Sbjct: 1 MRILGLDVGSKTIGVACSDALLLTAQAVGTLKRQSRRKDCLALADICKEKEVHRIVVGKP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+MNG + FV + V+WDERLTTV AQ+ L++ V R+KR V
Sbjct: 61 SHMNGDKSANTEKIEQFVEKLKKTVPQTEIVWWDERLTTVMAQRQLMEAGVRREKRKAVV 120
Query: 137 DSIAAALILQEVLD 150
D+IAA ILQ LD
Sbjct: 121 DTIAAVFILQNYLD 134
>gi|320529130|ref|ZP_08030222.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
F0399]
gi|320138760|gb|EFW30650.1| conserved hypothetical protein TIGR00250 [Selenomonas artemidis
F0399]
Length = 138
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G IG+A+SD A + R + L + + + A + GLP +M
Sbjct: 1 MSLDIGDVTIGIAVSDLLGLTAQGVETIRRTTLAADFERLSTLMRDYEVDALVAGLPKHM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG EG R RAF+ V +WDERL+TV+A + L++ +VSRKKR + +D +
Sbjct: 61 NGDEGTRCEMVRAFMAEAAQCFPGVKIHYWDERLSTVAATRTLLEGDVSRKKRRKVIDKM 120
Query: 140 AAALILQEVLDRISFL 155
AA ILQ LDR L
Sbjct: 121 AAVYILQGFLDRQRNL 136
>gi|16079793|ref|NP_390617.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310675|ref|ZP_03592522.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314998|ref|ZP_03596803.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319919|ref|ZP_03601213.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324200|ref|ZP_03605494.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321312264|ref|YP_004204551.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
gi|6226496|sp|O34634|RUVX_BACSU RecName: Full=Putative Holliday junction resolvase
gi|2635185|emb|CAB14681.1| putative Holliday junction resolvase [Bacillus subtilis subsp.
subtilis str. 168]
gi|291485144|dbj|BAI86219.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
natto BEST195]
gi|320018538|gb|ADV93524.1| Holliday junction resolvase-like protein [Bacillus subtilis BSn5]
Length = 138
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +DLGTK +G+A+SD A + + L I I ++G
Sbjct: 1 MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 61 FPKNMNGTVGPRGEASQTFAK-VLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 120 VIDKMAAVMILQGYLDSLN 138
>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 139
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G K IG+AISD A + R + + I + I+GLP
Sbjct: 1 MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMNG+ GP+ FV + + + +P + WDERLTTV A+++LI+ ++SR KR +
Sbjct: 61 KNMNGTLGPQGQKVVRFVEH-LKKAFSIPIILWDERLTTVEAERVLIEKADISRAKRKEV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA LILQ LD
Sbjct: 120 IDKLAAILILQNYLDS 135
>gi|239932416|ref|ZP_04689369.1| hypothetical protein SghaA1_29605 [Streptomyces ghanaensis ATCC
14672]
gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 154
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DPG A P + + V L I ++G
Sbjct: 2 RQGRRLAIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAAKVRGFARELARMIMPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ G
Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147
>gi|238924257|ref|YP_002937773.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
gi|259495705|sp|C4ZAY4|RUVX_EUBR3 RecName: Full=Putative Holliday junction resolvase
gi|238875932|gb|ACR75639.1| hypothetical protein EUBREC_1895 [Eubacterium rectale ATCC 33656]
Length = 143
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SD A + RK K+ QT + I + ++
Sbjct: 1 MRILGLDFGSKTVGVAVSDELLITAQGVEIVRRKSPSKLRQTLARIEEIIAEYKVDRIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN +EG R T+ F + R+ + ++WDERLTTV+A + +++ + R+ R
Sbjct: 61 GYPKNMNNTEGERCEKTKEFGDM-LARRTGLEVIYWDERLTTVAADRSMMETGIRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLES 157
+ VD IAA ILQ LD +S S
Sbjct: 120 EFVDEIAAIFILQGYLDYLSNSRS 143
>gi|20807699|ref|NP_622870.1| endonuclease [Thermoanaerobacter tengcongensis MB4]
gi|32130041|sp|Q8R5S9|RUVX_THETN RecName: Full=Putative Holliday junction resolvase
gi|20516249|gb|AAM24474.1| predicted endonuclease involved in recombination
[Thermoanaerobacter tengcongensis MB4]
Length = 139
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+G K IG+AISD A + RK + + + ++ ++GLP
Sbjct: 1 MRVLGLDVGDKTIGVAISDVSSTIAQGITTIRRKSFVEDVKAIEEIVKKYSVEKVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQK 135
NMNGS GP+ F + + +P VFWDERLTT+ A++ LI+ ++SR KR +
Sbjct: 61 KNMNGSIGPQGEKVIKFGE-KLREVLRIPVVFWDERLTTLQAERFLIEGVDMSRGKRKKV 119
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 IDKLAATIILQSYLDS 135
>gi|225375409|ref|ZP_03752630.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
gi|225212745|gb|EEG95099.1| hypothetical protein ROSEINA2194_01034 [Roseburia inulinivorans DSM
16841]
Length = 145
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SD A + R K+ Q+ + I N+ ++
Sbjct: 1 MRILGLDYGSKTVGVAVSDELLFTAQGLEIVRRQSPNKLRQSLARIEEIIKEYNVERIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN +EG R T+ F ++R+ + + WDERLTTVSA + +++ + R+ R
Sbjct: 61 GYPKNMNNTEGERCEKTKEFKEM-LERRTGLNVILWDERLTTVSADKHMMESGIRREDRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159
+ VD IAA ILQ LD ++ K
Sbjct: 120 KFVDEIAAVFILQGYLDYLAMHPEEK 145
>gi|225181970|ref|ZP_03735403.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
gi|225167332|gb|EEG76150.1| Holliday junction resolvase YqgF [Dethiobacter alkaliphilus AHT 1]
Length = 138
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G + IG+A SD A + R + + ++ ++G P
Sbjct: 1 MRILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + GPR + F + ++ +P WDERLTT+ A++ L+ ++SR KR + +
Sbjct: 61 KNMNNTVGPRAKLSEEFAD-KLSAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVI 119
Query: 137 DSIAAALILQEVL 149
D +AA LILQ L
Sbjct: 120 DKMAAVLILQNYL 132
>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus DSM
12680]
Length = 144
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D G KRIG+AISD A P + R + + T + ++GLP
Sbjct: 1 MRILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LN+NGS G + + + + + WDERL+T + Q +L++ + SR+KR + V
Sbjct: 61 LNLNGSRGEKAAQSAKLAQ-ELKEHLSLEVTLWDERLSTKAVQGVLLEADTSRRKRKRVV 119
Query: 137 DSIAAALILQEVLDRI 152
D +AAA ILQ LDRI
Sbjct: 120 DKLAAAYILQGYLDRI 135
>gi|91776452|ref|YP_546208.1| Holliday junction resolvase-like protein [Methylobacillus
flagellatus KT]
gi|124107442|sp|Q1GZH0|RUVX_METFK RecName: Full=Putative Holliday junction resolvase
gi|91710439|gb|ABE50367.1| Holliday junction resolvase YqgF [Methylobacillus flagellatus KT]
Length = 146
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ D G KRIG+AI + AHP + + + + I ++
Sbjct: 7 SSRGCVLGFDFGEKRIGVAIGEHLLGIAHPLVTIDAEANDKRFAAIAGLIEEWQPEMLVV 66
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +NG E R F ++ + +P DERL++ A Q L +S +K+
Sbjct: 67 GLPSYLNGDEHALTQLCRKFAR-RLEGRFNLPVQLVDERLSSAEASQTLKQSGISGRKQK 125
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA ILQ D ++
Sbjct: 126 SVLDQVAAQHILQSYFDGLA 145
>gi|291549894|emb|CBL26156.1| conserved hypothetical protein TIGR00250 [Ruminococcus torques
L2-14]
Length = 145
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
+ +D GTK +G+AISDP A + RK K+ +T + I + ++
Sbjct: 1 MRVMGLDYGTKTVGVAISDPLGLTAQGIETIQRKEENKLRRTCARIEELIKEYQVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +MN G R + F +M+ R+ + + WDERLTTV+A+Q LI+ V R+ R
Sbjct: 61 GFPKHMNNDIGERAQKSLEF-RDMLVRRTGLEVIMWDERLTTVAAEQTLIESGVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
Q VD IAA ILQ LD I
Sbjct: 120 QYVDKIAAVFILQGYLDSI 138
>gi|291519256|emb|CBK74477.1| conserved hypothetical protein TIGR00250 [Butyrivibrio fibrisolvens
16/4]
Length = 142
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFI 72
I +D GTK +G+AISDP A + R++ + T + + + I
Sbjct: 1 MSRILGLDYGTKTVGVAISDPLLLTAQEFETITRERASALRHTLVRIKEICEEYQVEKII 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NM+ SEG R T F +++++V +P DERLTTV A +IL + V++K R
Sbjct: 61 LGYPRNMDDSEGFRCEDTLEF-KKLLEKRVDIPIELVDERLTTVYADEILEESGVAKKDR 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +D IAAA+ILQ+ LD
Sbjct: 120 KKVIDQIAAAIILQDYLDN 138
>gi|225568728|ref|ZP_03777753.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
gi|225162227|gb|EEG74846.1| hypothetical protein CLOHYLEM_04807 [Clostridium hylemonae DSM
15053]
Length = 145
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D G K +G+A+SDP A + RK K+ QT + I + +
Sbjct: 2 SMRIMGLDYGEKTVGVAVSDPLGLTAQGIETIFRKEENKLRQTCARIEELIREYEVERIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +MN G R + F + R+ + V WDERLTTV A++ LI+ V R+ R
Sbjct: 62 LGLPKHMNNDIGDRAEQSLEFGEM-LKRRTGLEVVMWDERLTTVEAERTLIENKVRREDR 120
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D IAA ILQ LD I
Sbjct: 121 KKYIDKIAAVFILQGYLDSI 140
>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
Length = 134
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +DLG K IG+A+SD A P + R + Q EL I + ++G P
Sbjct: 1 MRVMGLDLGEKTIGVAVSDLLMLTAQPLLVIKRSEKEQ--EELAGIIKEYEVDTIVVGYP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G R +T AF + +P WDERL+TV+AQ+ LI +VSR KR + +
Sbjct: 59 KNMNGTIGERALATEAFAQ-ELQAAFRLPIKLWDERLSTVAAQKSLIQADVSRAKRKKVI 117
Query: 137 DSIAAALILQEVLDR 151
D +AA ILQ LD
Sbjct: 118 DKMAAVFILQGFLDS 132
>gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
Length = 138
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G + IG+AISD A + R + + L I + ++GL
Sbjct: 1 MNRIIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ FV ++++ + V WDERL+TV+A++ LI +VSRKKR Q
Sbjct: 61 PKNMNGTIGPQGEKVLLFVE-RLEKRFKLEVVTWDERLSTVAAEKFLIGADVSRKKRKQV 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD IS
Sbjct: 120 IDKLAAVHILQGYLDSIS 137
>gi|188586393|ref|YP_001917938.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|226731632|sp|B2A5J5|RUVX_NATTJ RecName: Full=Putative Holliday junction resolvase
gi|179351080|gb|ACB85350.1| Holliday junction resolvase YqgF [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 141
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I DLG IG+A+SD + A + + R+ + + ++ I ++ I+GLP
Sbjct: 1 MRIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNGS G F+ ++++V +P DERLT+ A+Q L++ +VSRKKR Q +
Sbjct: 61 KNMNGSLGQMADQIMDFIK-SLEQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA ILQ LDR
Sbjct: 120 DKLAAVNILQTYLDR 134
>gi|295396921|ref|ZP_06807045.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
gi|294974855|gb|EFG50558.1| crossover junction endodeoxyribonuclease [Aerococcus viridans ATCC
11563]
Length = 139
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+D+G+K +G+A+SDP A + + L I + A ++G
Sbjct: 1 MRYMGLDVGSKTVGVAVSDPFGWTAQGVEIIPIDEELEEFGLDRLGELIAEYKVEALVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN S GPR +++ + +IDR +P + DERLTTV A+++LI +VSRKKR +
Sbjct: 61 LPKNMNNSIGPRAEASQKYGQLVIDRF-DLPVFYQDERLTTVQAERMLIANDVSRKKRKK 119
Query: 135 KVDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 120 VIDKLAAVLILQNYLD 135
>gi|288870608|ref|ZP_06114688.2| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
gi|288866578|gb|EFC98876.1| putative holliday junction resolvase [Clostridium hathewayi DSM
13479]
Length = 161
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 4/141 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
I +D G+K +G+A+SD A + R+ K+ +T + I I +
Sbjct: 15 RMRIMGLDYGSKTVGVAVSDSLGLTAQALETITREDENKLRKTCARIEELIREYEIETIV 74
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN + G RV T +F M++R+ +P V WDERLTTV +++IL + V R+ R
Sbjct: 75 LGYPKNMNNTLGDRVEKTESF-KAMLERRTGLPVVLWDERLTTVQSERILQESGVRRENR 133
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD +
Sbjct: 134 KAVIDKVAAGLILQGYLDSLP 154
>gi|52081220|ref|YP_080011.1| Holliday junction resolvase-like protein [Bacillus licheniformis
ATCC 14580]
gi|52786601|ref|YP_092430.1| Holliday junction resolvase-like protein [Bacillus licheniformis
ATCC 14580]
gi|319644812|ref|ZP_07999045.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
gi|62900959|sp|Q65GS7|RUVX_BACLD RecName: Full=Putative Holliday junction resolvase
gi|52004431|gb|AAU24373.1| conserved protein YrrK [Bacillus licheniformis ATCC 14580]
gi|52349103|gb|AAU41737.1| YrrK [Bacillus licheniformis ATCC 14580]
gi|317392621|gb|EFV73415.1| Holliday junction resolvase [Bacillus sp. BT1B_CT2]
Length = 139
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +DLG+K +G+A+SD A + + L I ++G
Sbjct: 1 MRILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F +++ VP V WDERL+T++A+++LI +VSR+KR +
Sbjct: 61 FPKNMNGTVGPRGEASQKFAE-VLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 120 VIDKMAAVMILQGYLDSLN 138
>gi|325662158|ref|ZP_08150776.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471607|gb|EGC74827.1| Holliday junction resolvase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 148
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGLP 76
+D G+K +G+AISDP A + RK K+ +T + + + + ++G P
Sbjct: 1 MGLDYGSKTVGVAISDPLGLTAQGIETICRKEENKLRKTLARIEALVQEYQVEEIVLGFP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMN + G R + F ++R+ +P WDERLTTV A++ LI+ NV R+ R + V
Sbjct: 61 KNMNNTVGDRAEKSLEFKEM-LERRTALPVTMWDERLTTVEAERTLIENNVRREDRKKYV 119
Query: 137 DSIAAALILQEVLDRISFLESS 158
D IAA ILQ LD + F + S
Sbjct: 120 DKIAAVFILQGYLDSVYFRQKS 141
>gi|329766971|ref|ZP_08258499.1| Holliday junction resolvase [Gemella haemolysans M341]
gi|328837696|gb|EGF87321.1| Holliday junction resolvase [Gemella haemolysans M341]
Length = 142
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ I +D G+K IG+A+SD A + + + + N+ ++G
Sbjct: 4 KRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVQEHNVGKIVVG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 64 LPKNMDNSVGFRGEATLFFVEVLKKKIKNVEIILQDERLTTMGAERVLLEANVSRKKRKD 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142
>gi|296115811|ref|ZP_06834437.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
gi|295977788|gb|EFG84540.1| putative Holliday junction resolvase [Gluconacetobacter hansenii
ATCC 23769]
Length = 153
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I +L +L+P Q + ID G K IG+A+SD A P + R+K++ A E+
Sbjct: 1 MPLFNIPELRLALRPGQRLMGIDPGQKTIGIALSDVSLMLASPCTTVRRRKLSLVAAEIG 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ A + GLPL+++GS GP + R ++ + ++V +P WDERL++ + +
Sbjct: 61 ELARRHDVGALVGGLPLSLDGSFGPAAQAARDWM-MNLSQQVGLPAAMWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
+LI D++++R++R Q VD +AAA ILQ LD
Sbjct: 120 MLIQDVDMTRQRREQVVDKVAAAYILQAALD 150
>gi|255282413|ref|ZP_05346968.1| putative holliday junction resolvase [Bryantella formatexigens DSM
14469]
gi|255266997|gb|EET60202.1| putative holliday junction resolvase [Bryantella formatexigens DSM
14469]
Length = 161
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIG 74
I +D G+K +G+AISD A + R K+ QT + + I ++ ++G
Sbjct: 8 RIMGLDFGSKTVGVAISDELLITAQGIEIIRRTSENKLRQTCARIETLIGEYHVGRIVLG 67
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + G R + AF ++R+ +P V WDERLTTV A + L++ V R+KR
Sbjct: 68 FPKNMNNTIGERAEKSLAFKEM-LERRTSLPVVMWDERLTTVEADRTLMEGGVRREKRKD 126
Query: 135 KVDSIAAALILQEVLDRISF 154
VD +AA ILQ LD ++
Sbjct: 127 YVDKLAAVYILQGYLDYLAM 146
>gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514]
gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514]
Length = 138
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKRIGLAISD A P F++ + + L I + + ++G+
Sbjct: 1 MPRILAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGM 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GS GP + FV ++ V +P WDERLT+ A + LI +V R KR +K
Sbjct: 61 PRNMDGSYGPAALKVQEFV-TVLKDSVAIPIKTWDERLTSAQANRFLIQADVRRDKRKEK 119
Query: 136 VDSIAAALILQEVLDR 151
VD AAA++LQ LD
Sbjct: 120 VDKTAAAILLQSYLDS 135
>gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
Length = 138
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +DLGTK +G+A+SD A + + L I ++G
Sbjct: 1 MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 61 FPKNMNGTVGPRGEASQTFAK-LLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 120 VIDKMAAVMILQGYLDSLN 138
>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola sp. JR]
gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
Length = 133
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+GTKRIG+A+SDP R A + K + EL I ++ ++GLP
Sbjct: 1 MRVLGLDVGTKRIGVAVSDPLRLTAQGLTVI---KKGEELTELPRIIEQMEVSEIVVGLP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+GS GP+ + + +P +DERLTTV+A++IL++ ++SR KR Q V
Sbjct: 58 KNMDGSLGPKAQEILELTE-KLRETLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVV 116
Query: 137 DSIAAALILQEVLDRIS 153
D AA LILQ LD
Sbjct: 117 DKTAAVLILQGYLDSTR 133
>gi|170742466|ref|YP_001771121.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
gi|168196740|gb|ACA18687.1| Holliday junction resolvase YqgF [Methylobacterium sp. 4-46]
Length = 168
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 1 MSILLIEDLVKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
M+ + +S + + + +DLGTK IGLA+SD GRR A P + R K T A L
Sbjct: 1 MNRESVAAFAESSREAGRRLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDARRL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ + ++G PLNM+GSEGPR STRAFV + + +P + +DERL+T +
Sbjct: 61 AAIAAEHGVGGLVVGHPLNMDGSEGPRAQSTRAFVR-NLAPILPLPVLLFDERLSTAAVT 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
+ L++ + SR +R + VD +AAA ILQ LD ++ LE
Sbjct: 120 RTLLEADASRARRGKLVDKLAAAYILQGCLDVLAGLE 156
>gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri DSM
20016]
gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112]
gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|300908197|ref|ZP_07125663.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
gi|167012733|sp|A5VIX9|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase
gi|226731626|sp|B2G6F5|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase
gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM 20016]
gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri]
gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|300894624|gb|EFK87980.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
Length = 147
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+++SDP A + + + + E +A F+IG
Sbjct: 1 MRLMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN +EGPRV +++ + + R +P F DERLTTV A ++L+ + ++SR K+
Sbjct: 61 LPKNMNNTEGPRVEASQHYGKLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQK 120
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA ILQ LDR
Sbjct: 121 KVIDEVAATFILQSYLDR 138
>gi|160880429|ref|YP_001559397.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
gi|189046094|sp|A9KKS6|RUVX_CLOPH RecName: Full=Putative Holliday junction resolvase
gi|160429095|gb|ABX42658.1| Holliday junction resolvase YqgF [Clostridium phytofermentans ISDg]
Length = 150
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+ +G+AISD + A + RK K+ QT + I + ++
Sbjct: 1 MRIMGLDYGSVTVGVAISDSLKLTAQGIEVIRRKSETKLRQTLARIEELIKEYEVEEIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R + F + + R+ +P V WDERLTTV+A Q+L VS KK++
Sbjct: 61 GYPKNMNNTIGERAEKSEEFAEH-LRRRTGLPVVLWDERLTTVAAHQVLNAGEVSLKKKM 119
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
+ VD +AA ILQ LD +S +
Sbjct: 120 EVVDKLAAVFILQGYLDYLSNKK 142
>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
str. Eklund 17B]
gi|226725503|sp|B2THN2|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 137
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLG K IG+A+SDP A + R + EL + +IGLP
Sbjct: 1 MRILGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP + + + + FWDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTIGPSGEIAMEMGKLV-EEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +A+ ILQ LDRIS
Sbjct: 120 DKVASTYILQGYLDRIS 136
>gi|167767372|ref|ZP_02439425.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
gi|167711347|gb|EDS21926.1| hypothetical protein CLOSS21_01891 [Clostridium sp. SS2/1]
Length = 139
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D GTK +G+A+SD A P + RK K+ +T + + N+ +
Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYNVEKIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R
Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D IAA++ILQ LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139
>gi|295115537|emb|CBL36384.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SM4/1]
Length = 140
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I D G+K G+A+SDP A +VRK K+ QT + I I A ++
Sbjct: 1 MRIMGQDFGSKTTGVAVSDPLGLTAQGLETIVRKDENKLRQTCARIEELIEEYQIEAIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R T +F ++R+ P + WDERLTT++A+++L++ V R+ R
Sbjct: 61 GYPKNMNNTAGERAEKTESFKEM-LERRTGKPVILWDERLTTIAAERMLMESGVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AAALILQ LD
Sbjct: 120 AVIDKVAAALILQGYLDSQR 139
>gi|115350792|ref|YP_772631.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
AMMD]
gi|172059815|ref|YP_001807467.1| Holliday junction resolvase-like protein [Burkholderia ambifaria
MC40-6]
gi|122323878|sp|Q0BHS6|RUVX_BURCM RecName: Full=Putative Holliday junction resolvase
gi|226725493|sp|B1YU28|RUVX_BURA4 RecName: Full=Putative Holliday junction resolvase
gi|115280780|gb|ABI86297.1| Holliday junction resolvase YqgF [Burkholderia ambifaria AMMD]
gi|171992332|gb|ACB63251.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MC40-6]
Length = 149
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R +
Sbjct: 67 LPMHPDGTPHEMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAE 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|317497454|ref|ZP_07955774.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895240|gb|EFV17402.1| hypothetical protein HMPREF0996_00754 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 139
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D GTK +G+A+SD A P + RK K+ +T + + ++ +
Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R
Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDTLVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D IAA++ILQ LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139
>gi|299822852|ref|ZP_07054738.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
gi|299816381|gb|EFI83619.1| crossover junction endodeoxyribonuclease [Listeria grayi DSM 20601]
Length = 138
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISD A + + + + ++ ++G
Sbjct: 1 MRVMGLDVGSKTVGVAISDALGWTAQGIETIAINEAAKQFGYDRVKELAQEYEVSKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + GPR S++ + +++++V +P V WDER+TT +A++ L++ +VSR KR +
Sbjct: 61 LPKNMNNTLGPRAESSKKYAE-VLEKRVQLPVVLWDERMTTQAAERTLLEADVSRGKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKLAAVMILQSYLDTNN 138
>gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
Length = 139
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIG 74
+D+GTK +G+A+SD A L R + L++ ++ +IG
Sbjct: 1 MRALGLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GP F + V FV WDERLTTV+A+++L+ +VSRKKR +
Sbjct: 61 LPKNMNGTIGPSGERCMEFAD-SLKEHVDCEFVMWDERLTTVAAERMLVSADVSRKKRKK 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 120 VIDKMAAVMILQGYLDR 136
>gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium
bathyomarinum JL354]
Length = 162
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L ++L + +DLGTK IG+A+ D G RFA L R K + EL I +I
Sbjct: 14 LAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSI 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+IGLP NM+GSEGPR ++RA+ + +P + WDER +T SA+ +I ++VS
Sbjct: 74 RGIVIGLPRNMDGSEGPRAQASRAYAR-NLAEAFGLPVLLWDERWSTKSAEDAMIGLDVS 132
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
R+KR +++D+ AA +ILQ +D
Sbjct: 133 RRKRAERIDAEAATIILQGAID 154
>gi|329113628|ref|ZP_08242406.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
gi|326697035|gb|EGE48698.1| Putative Holliday junction resolvase [Acetobacter pomorum DM001]
Length = 154
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A +
Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
T I ++G+PL+++GS GP ++R + + + +P WDERL++ + +
Sbjct: 61 DLATEHEIGGMVVGIPLSLDGSFGPAAQASRDWA-LALSEQTGLPVCQWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+LI + ++SR +R + VD +AAA ILQ LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153
>gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
Length = 138
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G IG+A+SD A + R L I + + GL
Sbjct: 3 SGRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ F +I ++ + FWDERLTTVSA+++LI+ +V RK R +
Sbjct: 63 PKNMNGTIGPQAEKVIKFCD-LIKEELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKKV 121
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA LILQ LD I
Sbjct: 122 IDKLAAVLILQGYLDSI 138
>gi|240145916|ref|ZP_04744517.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|257201981|gb|EEV00266.1| putative holliday junction resolvase [Roseburia intestinalis L1-82]
gi|291535170|emb|CBL08282.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
M50/1]
Length = 144
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SD A + R K+ QT + + I + ++
Sbjct: 1 MRILGLDFGSKTVGVAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN +EG R T+ F ++R+ + + WDERLTTVSA + +++ + R+ R
Sbjct: 61 GYPKNMNNTEGERCEKTKEFQEM-LERRTGLEVILWDERLTTVSADKHMMESGIRREDRK 119
Query: 134 QKVDSIAAALILQEVLDRISF 154
+ VD IAA ILQ LD S
Sbjct: 120 KYVDEIAAVFILQGYLDYRSM 140
>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3
str. Alaska E43]
gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226725502|sp|B2V3W4|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 137
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLG K IG+AISDP A + R + EL + +IGLP
Sbjct: 1 MRILGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP + + + + FWDERLTTV+A + +++ ++SR KR + V
Sbjct: 61 KNMNGTIGPSGEIAMEMGKLV-EEALNIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +A+ ILQ LDRIS
Sbjct: 120 DKVASTYILQGYLDRIS 136
>gi|258543587|ref|YP_003189020.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|256634665|dbj|BAI00641.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01]
gi|256637721|dbj|BAI03690.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-03]
gi|256640775|dbj|BAI06737.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-07]
gi|256643830|dbj|BAI09785.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-22]
gi|256646885|dbj|BAI12833.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-26]
gi|256649938|dbj|BAI15879.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-32]
gi|256652928|dbj|BAI18862.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655982|dbj|BAI21909.1| Holliday junction resolvase YqgF [Acetobacter pasteurianus IFO
3283-12]
Length = 154
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L + DLV +L + + ID G K++GLA+SD R A P + R K+ Q A +
Sbjct: 1 MTLLSLTDLVATLPRHARLLGIDPGKKQVGLALSDVSRMVASPFQTVKRGKLGQMASFIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I ++G+PL+++GS GP ++R + + + +P WDERL++ + +
Sbjct: 61 DLAKEHEIGGMVVGIPLSLDGSFGPAAQASRDWA-LALSEQTGLPVCQWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+LI + ++SR +R + VD +AAA ILQ LD +
Sbjct: 120 MLIDEADLSRARRAEMVDRLAAAYILQAALDSLP 153
>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 139
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I+ +P + DERLTTV A+++LI+ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASKAYGE-KIESLFSLPVHYQDERLTTVEAERMLIEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|154686879|ref|YP_001422040.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens FZB42]
gi|308174438|ref|YP_003921143.1| Holliday junction resolvase [Bacillus amyloliquefaciens DSM 7]
gi|167012691|sp|A7Z733|RUVX_BACA2 RecName: Full=Putative Holliday junction resolvase
gi|154352730|gb|ABS74809.1| YrrK [Bacillus amyloliquefaciens FZB42]
gi|307607302|emb|CBI43673.1| putative Holliday junction resolvase [Bacillus amyloliquefaciens
DSM 7]
Length = 138
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +DLGTK +G+A+SD A + + L + N+ ++G
Sbjct: 1 MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 61 FPKNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 120 VIDKMAAVMILQGYLDSLN 138
>gi|30022462|ref|NP_834093.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
14579]
gi|218232910|ref|YP_002369196.1| Holliday junction resolvase-like protein [Bacillus cereus B4264]
gi|228923138|ref|ZP_04086429.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229071895|ref|ZP_04205106.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|229111859|ref|ZP_04241405.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|229129667|ref|ZP_04258635.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|229146957|ref|ZP_04275321.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|229152590|ref|ZP_04280779.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|33301594|sp|Q812R9|RUVX_BACCR RecName: Full=Putative Holliday junction resolvase
gi|226725486|sp|B7HE21|RUVX_BACC4 RecName: Full=Putative Holliday junction resolvase
gi|29898020|gb|AAP11294.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|218160867|gb|ACK60859.1| conserved hypothetical protein TIGR00250 [Bacillus cereus B4264]
gi|228630851|gb|EEK87491.1| Holliday junction resolvase [Bacillus cereus m1550]
gi|228636556|gb|EEK93022.1| Holliday junction resolvase [Bacillus cereus BDRD-ST24]
gi|228653784|gb|EEL09654.1| Holliday junction resolvase [Bacillus cereus BDRD-Cer4]
gi|228671615|gb|EEL26913.1| Holliday junction resolvase [Bacillus cereus Rock1-15]
gi|228711191|gb|EEL63155.1| Holliday junction resolvase [Bacillus cereus F65185]
gi|228836517|gb|EEM81867.1| Holliday junction resolvase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 137
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + N+ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 120 VIDKMAAVVILQGFLDR 136
>gi|160895347|ref|ZP_02076118.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
gi|156863040|gb|EDO56471.1| hypothetical protein CLOL250_02906 [Clostridium sp. L2-50]
Length = 165
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA 70
N I +D GTK +G+A+SD A P + RK K+ QT + S I
Sbjct: 18 DKNMRIIGLDYGTKTVGVAVSDALMITAQPLETIERKSANKLRQTLARIESIIEEYQAER 77
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G P NMN + G R +T F ++R+ + + WDERL+TV A++IL+D V R+
Sbjct: 78 IVLGYPKNMNNTIGERAEATEQF-KEDLERRTGLEVILWDERLSTVEAERILMDTGVRRE 136
Query: 131 KRIQKVDSIAAALILQEVLDRISF 154
R Q VD +AAA+ILQ LD +
Sbjct: 137 NRKQYVDKMAAAVILQNYLDSQAH 160
>gi|218680912|ref|ZP_03528809.1| Holliday junction resolvase YqgF [Rhizobium etli CIAT 894]
Length = 144
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAGTLAPRQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F E +A FIIGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAAAEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALIL 145
L++M+VSR KR +++DS AA+ IL
Sbjct: 120 TLLEMDVSRAKRAERIDSAAASFIL 144
>gi|210610063|ref|ZP_03288242.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
gi|210152674|gb|EEA83680.1| hypothetical protein CLONEX_00428 [Clostridium nexile DSM 1787]
Length = 143
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
+ +D G+K +G+AISDP A + RK K+ QT + + + ++
Sbjct: 1 MRVMGLDYGSKTVGVAISDPLGITAQGIETIHRKAENKLRQTLARIEELVKEYEVDKLVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +MN + G R + M++R+ +P + WDERLTT+ A++ LI+ V R+ R
Sbjct: 61 GFPKHMNNTIGDRAEKSLEL-KAMLERRTGLPVIMWDERLTTLEAERTLIESKVRREDRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLES 157
+ VD IAA ILQ LD I
Sbjct: 120 KYVDKIAAVFILQGYLDSIRMNHE 143
>gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
Length = 139
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQ-RIAELFGLPVDYQDERLTTVAAERMLVEQADVSRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
Length = 154
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFAQELAGLIAPVPVRLLDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ SS G
Sbjct: 122 VIDQAAAVIILQQALESERVSGSSPG 147
>gi|291559331|emb|CBL38131.1| conserved hypothetical protein TIGR00250 [butyrate-producing
bacterium SSC/2]
Length = 139
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ I +D GTK +G+A+SD A P + RK K+ +T + + ++ +
Sbjct: 1 MRRILGLDYGTKTVGVALSDELHITAQPLETITRKDANKLRKTYARIEELVKEYDVEKIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T +F + + R+ + + WDERLTTV+++++L++ V R+ R
Sbjct: 61 LGLPKNMNNTVGERGEDTLSF-RDALVRRTGLEVILWDERLTTVASEKVLMESGVRRENR 119
Query: 133 IQKVDSIAAALILQEVLDRI 152
+ +D IAA++ILQ LD +
Sbjct: 120 KKVIDQIAASMILQGYLDSL 139
>gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
gi|167012685|sp|A5FWW0|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase
gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
Length = 158
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ + A +L
Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLAEAAATIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E AA IIGLPL+M+GS GP + R + + I R+ +P DERL++ + +
Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWA-HAIARETGLPVAMMDERLSSAAVNR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
LI+ +V+R KR +VD+ AA+ +LQ LD ++
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLNE 153
>gi|291522741|emb|CBK81034.1| conserved hypothetical protein TIGR00250 [Coprococcus catus GD/7]
Length = 155
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF---ITTENIAAFI 72
+ I +D G+K +G+A+SDP A + RK + I +
Sbjct: 2 KKRIIGLDYGSKTVGVAVSDPLGFTAQGLETITRKDENKLRKTYARIEALIREYEAEQIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P NMN +EG RV T AF ++R+ + + WDER++TV+++++L++ NV R+ R
Sbjct: 62 LGYPKNMNDTEGERVEKTLAF-KEALERRTGLEVILWDERMSTVASERVLMEGNVRREDR 120
Query: 133 IQKVDSIAAALILQEVLDRISFLESSK 159
+D +AAA ILQ LD SF E+
Sbjct: 121 KTYIDKMAAAFILQGYLDYQSFSENQA 147
>gi|307292653|ref|ZP_07572499.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
gi|306880719|gb|EFN11935.1| Holliday junction resolvase YqgF [Sphingobium chlorophenolicum L-1]
Length = 156
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
MS+L + ++L + +D+GTK IGLA+ D G A P + R K ++ +
Sbjct: 1 MSLLTADRALFREALPHGGRLIGLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIA 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T +
Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ L++ + SR +R + VD +AA+ ILQ +D +
Sbjct: 119 TRTLLEADASRARREELVDKLAASYILQGAIDGL 152
>gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046]
Length = 138
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISD A + + + + N+ F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + GPR ++ ++ +++ P WDER+TT++A+++LI+ +VSRKKR Q
Sbjct: 61 YPKNMNNTIGPRGEASESY-KKLLEDTFGFPVKLWDERMTTMAAERMLIEADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD +
Sbjct: 120 VIDKMAAVMILQGYLDSKN 138
>gi|325262832|ref|ZP_08129568.1| putative Holliday junction resolvase [Clostridium sp. D5]
gi|324031926|gb|EGB93205.1| putative Holliday junction resolvase [Clostridium sp. D5]
Length = 148
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D GTK +G+AISD A + RK K+ +T + ++ + ++
Sbjct: 1 MRIMGLDYGTKTVGVAISDALGFTAQGIETIQRKEENKLRRTLARIEELVSEYEVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +MN G R + F +M+ R+ + + WDERLTTV A++ LI+ NV R+ R
Sbjct: 61 GFPKHMNNDIGERAEKSLEF-RDMLVRRTGLEVIMWDERLTTVEAERTLIESNVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+ +D IAA ILQ LD + +L+ G
Sbjct: 120 KYIDKIAAIFILQGYLDSV-YLQRQAG 145
>gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
Length = 157
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G +RIG+AISD A P L R + + A + GLPL
Sbjct: 13 RIMGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHEATAIVAGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+M+G P+ ++AF + ++ +P FWDERLT+ +A +IL R +D
Sbjct: 73 HMSGDLSPQAQKSQAFAQ-ELAKRTGLPLYFWDERLTSHAAHEILDVSGFGTTGRKAVID 131
Query: 138 SIAAALILQEVLD 150
+AA LILQ LD
Sbjct: 132 QVAAVLILQGFLD 144
>gi|88607507|ref|YP_504940.1| hypothetical protein APH_0332 [Anaplasma phagocytophilum HZ]
gi|146325550|sp|Q2GL11|RUVX_ANAPZ RecName: Full=Putative Holliday junction resolvase
gi|88598570|gb|ABD44040.1| conserved hypothetical protein TIGR00250 [Anaplasma phagocytophilum
HZ]
Length = 166
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +L +L+P + I ID G ++IGLA+SDP A P R+ + Q EL
Sbjct: 1 MLCESIRELFSALEPGRRILGIDFGERKIGLALSDPTYLIAIPHSVYHRRNMRQDLGELS 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +E+ A ++G PL +G EG RAF +I + V DER TT A +
Sbjct: 61 AVLRSEDAAVVVMGNPLQSDGLEGEMCQIVRAFAQKLIKK-SGVSIYLHDERYTTAMASR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK+ + D I+AAL+LQ+VLD
Sbjct: 120 ATREAGLRRKESQKIDDKISAALVLQQVLD 149
>gi|47566574|ref|ZP_00237396.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206969800|ref|ZP_03230754.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228941554|ref|ZP_04104103.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954671|ref|ZP_04116694.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960658|ref|ZP_04122303.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228974484|ref|ZP_04135051.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981078|ref|ZP_04141379.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228987638|ref|ZP_04147752.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229048094|ref|ZP_04193667.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|229081651|ref|ZP_04214146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|229180662|ref|ZP_04308002.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|229192598|ref|ZP_04319559.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|296504877|ref|YP_003666577.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|47556604|gb|EAL14936.1| conserved hypothetical protein protein TIGR00250 [Bacillus cereus
G9241]
gi|206735488|gb|EDZ52656.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH1134]
gi|228590905|gb|EEK48763.1| Holliday junction resolvase [Bacillus cereus ATCC 10876]
gi|228602807|gb|EEK60288.1| Holliday junction resolvase [Bacillus cereus 172560W]
gi|228701655|gb|EEL54146.1| Holliday junction resolvase [Bacillus cereus Rock4-2]
gi|228723249|gb|EEL74621.1| Holliday junction resolvase [Bacillus cereus AH676]
gi|228772098|gb|EEM20550.1| Holliday junction resolvase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228778619|gb|EEM26885.1| Holliday junction resolvase [Bacillus thuringiensis Bt407]
gi|228785201|gb|EEM33213.1| Holliday junction resolvase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228799022|gb|EEM45994.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228804998|gb|EEM51594.1| Holliday junction resolvase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818110|gb|EEM64186.1| Holliday junction resolvase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|296325929|gb|ADH08857.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
BMB171]
gi|326942168|gb|AEA18064.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 137
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + N+ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGFLDS 136
>gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 154
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 62/146 (42%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRAFAGELAKGVAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ G
Sbjct: 122 VIDQAAAVIILQQALESERVSGEPPG 147
>gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
Length = 158
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++ + DL +L N + +D G+K IG+A+SD GRR A P + R K+ +A +L
Sbjct: 1 MTLFNLTDLASTLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMKRGKLADSAATIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E AA IIGLPL+M+GS GP + R + + I R+ +P DERL++ + +
Sbjct: 61 DIARKEGAAALIIGLPLSMDGSIGPAAQAARDWA-HAIARETGLPVAMMDERLSSAAVNR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
LI+ +V+R KR +VD+ AA+ +LQ LD ++
Sbjct: 120 ALIEADVTRAKRAGRVDAAAASYMLQGALDLLNE 153
>gi|256847958|ref|ZP_05553402.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
101-4-CHN]
gi|256715018|gb|EEU29995.1| Holliday junction resolvase YqgF [Lactobacillus coleohominis
101-4-CHN]
Length = 146
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A SDP A + + + + +A F++G
Sbjct: 1 MRLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEENEIFGIDRIAELVQARQVAGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN +EGPRV ++R + + R +P F DERLTTV A ++L+ + +VSR+K+
Sbjct: 61 LPKNMNNTEGPRVEASRHYGELLRQRFPKLPIDFQDERLTTVQAHRMLVEEADVSRRKQK 120
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA+LILQ LDR
Sbjct: 121 KVIDELAASLILQNYLDR 138
>gi|170698781|ref|ZP_02889845.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
gi|170136338|gb|EDT04602.1| Holliday junction resolvase YqgF [Burkholderia ambifaria IOP40-10]
Length = 149
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R +
Sbjct: 67 LPMHPDGTPHEMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAE 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|295399319|ref|ZP_06809301.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
gi|294978785|gb|EFG54381.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
Length = 138
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIG 74
+DLGTK +G+A+SD A + ++ L I + ++G
Sbjct: 1 MRALGLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F ++++ +P + WDERL+T++A+++LI +VSRKKR +
Sbjct: 61 FPKNMNGTVGPRAEASQRFAKI-LEQEFALPVILWDERLSTMAAERMLIAADVSRKKRRK 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQSYLDS 136
>gi|56421089|ref|YP_148407.1| hypothetical protein GK2554 [Geobacillus kaustophilus HTA426]
gi|261418430|ref|YP_003252112.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297529282|ref|YP_003670557.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|319767610|ref|YP_004133111.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
gi|62900906|sp|Q5KWU7|RUVX_GEOKA RecName: Full=Putative Holliday junction resolvase
gi|56380931|dbj|BAD76839.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374887|gb|ACX77630.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC61]
gi|297252534|gb|ADI25980.1| Holliday junction resolvase YqgF [Geobacillus sp. C56-T3]
gi|317112476|gb|ADU94968.1| Holliday junction resolvase YqgF [Geobacillus sp. Y412MC52]
Length = 138
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIG 74
+DLGTK +G+A+SD A + ++ L + I + ++G
Sbjct: 1 MRTLGLDLGTKTLGVAVSDELGLTAQGLETIAIDTERGDYGLKRLRAIIDEYGVDTIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR ++ F + + +P V WDERL+T++A+++LI +VSRKKR +
Sbjct: 61 WPKNMNGTLGPRAEASERFAA-KLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRRK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AAA+ILQ LD
Sbjct: 120 VIDKMAAAVILQSYLDSKR 138
>gi|229086950|ref|ZP_04219107.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
gi|228696326|gb|EEL49154.1| Holliday junction resolvase [Bacillus cereus Rock3-44]
Length = 137
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + N+ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGIFGFDRVSELVKQYNVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + + + + + + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQYAE-SLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGYLDS 136
>gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187]
gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1]
gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
gi|226725487|sp|B7HQE4|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase
gi|254767497|sp|B9IYF1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase
gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187]
gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
Length = 137
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + ++ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 120 VIDKMAAVVILQGFLDR 136
>gi|294012198|ref|YP_003545658.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
gi|292675528|dbj|BAI97046.1| putative Holliday junction resolvase [Sphingobium japonicum UT26S]
Length = 156
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
MSIL + ++L + +D+GTK IG+A+ D G A P + R K ++ +
Sbjct: 1 MSILTADRAAFREALPHGGRLIGLDVGTKTIGIALCDAGWSIASPAHTVSRGKFSKDKIA 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L +F+ + + +IGLPLN++GSE PR ++RAF N+ D + +P +FWDER +T +
Sbjct: 61 LAAFMEQQQVKGVVIGLPLNLDGSESPRSQASRAFGRNIAD--LGLPILFWDERWSTQAV 118
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ L++ + SR +R + VD +AA+ ILQ +D +
Sbjct: 119 TRTLLEADASRARRGELVDKLAASYILQGAIDGL 152
>gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
Length = 139
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGL 75
I +DLG K IG+A+SDP A + RK Q L I + ++GL
Sbjct: 1 MRIMCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GP+ F+ + RK+ + WDERL+TV+A++IL+ ++SR KR +
Sbjct: 61 PKNMNGTTGPQAEKALDFIEY-LKRKLGLVVEAWDERLSTVAAERILLSADISRGKRKKV 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AAA+ILQ LD S
Sbjct: 120 IDKMAAAVILQGYLDAHS 137
>gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J]
gi|254767528|sp|B9DW62|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase
gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J]
Length = 139
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K + L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I+ ++P V+ DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGK-KIEDLFHIPVVYQDERLTTVQAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|148553525|ref|YP_001261107.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
gi|167016511|sp|A5V3V3|RUVX_SPHWW RecName: Full=Putative Holliday junction resolvase
gi|148498715|gb|ABQ66969.1| Holliday junction resolvase YqgF [Sphingomonas wittichii RW1]
Length = 151
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M D +L +A +D+GT+ IG+A+ D G A P ++R K + A +L
Sbjct: 1 MISASTLDFRDALPDRGRLAGLDVGTRTIGVALCDAGWTIASPAETILRAKFSVDAAKLR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + + +IGLPLN++GS+ PR S RAF N+ +P + WDER +T + +
Sbjct: 61 ALVAAQLVKGLVIGLPLNLDGSDSPRTQSVRAFARNV--EPFGLPILLWDERWSTQAVTR 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L+D + SR +R + VD +AAA ILQ +D +
Sbjct: 119 TLLDADASRARRAELVDKLAAAYILQGAIDAM 150
>gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
Length = 139
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGK-RLEELFNLPVEYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
gi|158448009|gb|EDP25004.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
Length = 149
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAF-- 71
+ +D GTK +G+A+SDP A P + RK K+ QT + + I A
Sbjct: 1 MRVLGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQE 60
Query: 72 -----IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
++G P NMN +EG R +T +F N ++R+ + V WDERLTTV A++IL+D
Sbjct: 61 KIEKIVLGYPKNMNNTEGDRCEATVSF-KNDLERRTGLEVVLWDERLTTVEAERILMDSG 119
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISF 154
V R+ R +D +AAA+ILQ LD S
Sbjct: 120 VRRENRKTYIDKMAAAVILQNYLDSKSN 147
>gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
Length = 139
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQ-RIAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|197303729|ref|ZP_03168766.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
29176]
gi|197297249|gb|EDY31812.1| hypothetical protein RUMLAC_02458 [Ruminococcus lactaris ATCC
29176]
Length = 148
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D GTK +G+AISD + A + RK K+ +T + I + ++
Sbjct: 1 MRIMGLDYGTKTVGVAISDALKITAQGIETIQRKEENKLRKTCARIEQLIKEYEVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +MN G R + F M++R+ + V WDERLTTV+A++ LI+ +V R+ R
Sbjct: 61 GFPKHMNNDVGERAEKSLEF-KAMLERRTGLEVVMWDERLTTVAAERTLIESSVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
Q VD IAA ILQ LD +S + G
Sbjct: 120 QYVDKIAAVFILQGYLDLLSMRNGADG 146
>gi|326791231|ref|YP_004309052.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
gi|326541995|gb|ADZ83854.1| Holliday junction resolvase [Clostridium lentocellum DSM 5427]
Length = 139
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFII 73
I +D GTK G+AISDP A + R++ T + T + ++
Sbjct: 1 MRILGLDFGTKTTGVAISDPMGWTAQGLEIIRRQEDEHLKATMKRIEEICTAYKVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN + G R T F ++ K+ +P WDERL+TV+A+Q+L++ ++SRKKR
Sbjct: 61 GLPKNMNNTLGERGEKTLLF-KEKLENKLKIPVETWDERLSTVAAEQVLLEADMSRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 120 NVIDKLAATIILQNYLD 136
>gi|94497357|ref|ZP_01303928.1| endonuclease [Sphingomonas sp. SKA58]
gi|94423220|gb|EAT08250.1| endonuclease [Sphingomonas sp. SKA58]
Length = 169
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
M+++ I+ ++L + +D+GTK IGLA+ D A P + R K + +
Sbjct: 13 MTLVTIDRVAFRQALPHGGRLIGMDVGTKTIGLALCDAAWTIASPAYTVTRGKFGKDKIG 72
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L +FI + + +IGLPLN++GS PR ++RAF HN+ D + +P + WDER +T +
Sbjct: 73 LAAFIDQQQVKGVVIGLPLNLDGSFSPRAQASRAFAHNIAD--LGLPILLWDERWSTQAV 130
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ L++ + SR +R + VD +AA+ ILQ +D +
Sbjct: 131 TRTLLEADASRARRDELVDKLAASYILQGAIDGL 164
>gi|229198513|ref|ZP_04325217.1| Holliday junction resolvase [Bacillus cereus m1293]
gi|228585016|gb|EEK43130.1| Holliday junction resolvase [Bacillus cereus m1293]
Length = 137
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + ++ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGFLDS 136
>gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17]
gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17]
Length = 154
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 1 MSILLIED--LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE 58
MS++ + +L + +D+GTK IG A+ D G FA P + R K T+
Sbjct: 1 MSLITTDRSAFRDALPSGGRLIGLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEA 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
L++ I + + +IGLPLN++GSE PR STRAF N D P + WDER +TV+
Sbjct: 61 LIAMIAQQGVKGLVIGLPLNLDGSESPRSQSTRAFARNCADL---GPILLWDERWSTVAV 117
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
++ +I+ ++SR KR +++D++AAA ILQ +D +
Sbjct: 118 ERTMIEQDMSRAKRAERIDNLAAAHILQAAIDAL 151
>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
Length = 139
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQRV-SELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Ames]
gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
10987]
gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Sterne]
gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L]
gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Bacillus anthracis str. A2012]
gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
str. Al Hakam]
gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
Tsiankovskii-I]
gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|218905581|ref|YP_002453415.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227817165|ref|YP_002817174.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|229603692|ref|YP_002868674.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
A1055]
gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Kruger B]
gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Australia 94]
gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus anthracis CI]
gi|33301603|sp|Q81LK2|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase
gi|62900956|sp|Q634F8|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase
gi|62900978|sp|Q6HDD9|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase
gi|62900993|sp|Q730E7|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase
gi|167012692|sp|A0RIZ9|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase
gi|226725484|sp|B7JPX2|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase
gi|254767494|sp|C3P975|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase
gi|254767495|sp|C3L5Z2|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase
gi|254767496|sp|C1EST1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase
gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames]
gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC
10987]
gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
'Ames Ancestor']
gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Sterne]
gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction
resolvase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction
resolvase [Bacillus cereus E33L]
gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis
Tsiankovskii-I]
gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 137
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + ++ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGFLDS 136
>gi|153812697|ref|ZP_01965365.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
gi|149831213|gb|EDM86302.1| hypothetical protein RUMOBE_03104 [Ruminococcus obeum ATCC 29174]
Length = 140
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SDP A + RK K+ +T ++ + I ++
Sbjct: 1 MRILGLDYGSKTVGVAVSDPLGVTAQRLETIWRKQENKLRRTLAQVEELVKEYEIEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R F + ++ + + WDERLTTVSA + L++ V R+ R
Sbjct: 61 GYPKNMNNTVGERAEKALEFGEM-LKKRTGLEVIMWDERLTTVSADRALMEAGVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D IAA ILQ LD +
Sbjct: 120 EYLDGIAAVFILQGYLDSL 138
>gi|328554357|gb|AEB24849.1| Holliday junction resolvase-like protein [Bacillus
amyloliquefaciens TA208]
gi|328912761|gb|AEB64357.1| Putative Holliday junction resolvase [Bacillus amyloliquefaciens
LL3]
Length = 138
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +DLGTK +G+A+SD A + + L + N+ ++G
Sbjct: 1 MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR +
Sbjct: 61 FPKNMNGTIGPRGEASQTFAK-LLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD ++
Sbjct: 120 VIDKMAAVMILQGFLDSLN 138
>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
SK36]
gi|167016514|sp|A3CQZ7|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
SK36]
Length = 139
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQ-RIAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|323142335|ref|ZP_08077167.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
12067]
gi|322413219|gb|EFY04106.1| RNAse H domain protein, YqgF family [Phascolarctobacterium sp. YIT
12067]
Length = 140
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 74/138 (53%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
S+D+GT+ IG+A+SD A+ + R + + I + ++G P
Sbjct: 1 MRKMSLDVGTRTIGIAVSDLLGMIANGVETIHRTTEERDYARIAELIAEHEVDTLVVGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ G R + A + V V WDERL+TV+A+++L+D ++ RKKR + +
Sbjct: 61 KNMNGTIGERAQACEAMAEKLRTMFPKVQVVLWDERLSTVAAEKVLVDADLRRKKRKKVI 120
Query: 137 DSIAAALILQEVLDRISF 154
D +AA +ILQ LD SF
Sbjct: 121 DMMAAVVILQNYLDSKSF 138
>gi|291539698|emb|CBL12809.1| conserved hypothetical protein TIGR00250 [Roseburia intestinalis
XB6B4]
Length = 144
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFII 73
I +D G+K +GLA+SD A + R K+ QT + + I + ++
Sbjct: 1 MRILGLDFGSKTVGLAVSDELLLTAQGLEIIRRQSPNKLRQTLARIEAIIAEYQVECIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN +EG R T+ F ++R+ + + WDERLTTVSA + +++ + R+ R
Sbjct: 61 GYPKNMNNTEGERCEKTKEFKEM-LERRTGLEVILWDERLTTVSADKHMMESGIRREDRK 119
Query: 134 QKVDSIAAALILQEVLDRISF 154
+ VD IAA ILQ LD S
Sbjct: 120 KYVDEIAAVFILQGYLDYRSM 140
>gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
Length = 137
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + N+ I+G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAQ-SLRELLQLDVMMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGYLDS 136
>gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
Length = 144
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G IG+AISD A RK+ ++ + +IGLP
Sbjct: 1 MRILGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
NMNGS GP+ AF + D + V WDERL+TV+AQ+ LI+ +VSR KR +
Sbjct: 61 KNMNGSIGPQGKKVIAFKQRLADYMADDIDIVLWDERLSTVAAQRSLIEADVSRAKRKKV 120
Query: 136 VDSIAAALILQEVLDRISFLESS 158
+D +AA ILQ LD + ++
Sbjct: 121 IDKMAAVYILQGYLDSLRITKNK 143
>gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
Length = 170
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ I + + IDLGTK IGLA+SD GR+ A P + R K T A L
Sbjct: 1 MNFDAIRAFAAESRGGARLIGIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + ++GLPLNM+GSEGPRV STRAF+ + + +P VF+DERL+T +
Sbjct: 61 ALCRQHAVGGLVVGLPLNMDGSEGPRVQSTRAFMR-NLAPILPLPHVFFDERLSTAVVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
LI+ + SR +R Q VD +AAA ILQ LD + L
Sbjct: 120 ALIEADASRARRGQLVDKLAAAYILQGCLDVMRNL 154
>gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
Length = 144
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G++ +G+A+SD A + + + + + F++
Sbjct: 1 MGRILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV ++RA+ ++ +P F DERLTTV A+++LI+ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVDASRAYGE-LLKETFGLPIDFQDERLTTVEAERMLIEEADTSRKKR 119
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+ +D +AA LILQ LDR L
Sbjct: 120 KKVIDKLAAGLILQNYLDRKGSL 142
>gi|167757700|ref|ZP_02429827.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
gi|167664582|gb|EDS08712.1| hypothetical protein CLOSCI_00030 [Clostridium scindens ATCC 35704]
Length = 141
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+AISDP A + RK K+ +T + + I + ++
Sbjct: 1 MRIMGLDYGSKTVGVAISDPLGITAQAIETICRKDENKLRKTCARIETLIEEYKVERIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MN G R + F + R+ + V WDERLTTV A++ LI+ V R+ R
Sbjct: 61 GLPKHMNNDIGDRAERSLEFGKM-LSRRTGLEVVMWDERLTTVEAERTLIENKVRREDRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D IAA ILQ LD I
Sbjct: 120 KYIDKIAAVFILQGYLDSI 138
>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS8232]
gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SSI-1]
gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10394]
gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS6180]
gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS9429]
gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS2096]
gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10750]
gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
str. Manfredo]
gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|54039589|sp|P67495|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
gi|54042293|sp|P67494|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
gi|62900945|sp|Q5X9I3|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
gi|118597224|sp|Q1J498|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
gi|146325612|sp|Q1J9D0|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
gi|146325613|sp|Q1JJH9|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
gi|146325614|sp|Q48QX0|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
gi|167016512|sp|A2RGU5|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10394]
gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180]
gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS9429]
gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS2096]
gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10750]
gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
Manfredo]
gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
Length = 139
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV ++ + ++ I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTNGPRVDASITYGNH-IEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 120 KVIDKLAAQLILQNYLNR 137
>gi|116626054|ref|YP_828210.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
Ellin6076]
gi|116229216|gb|ABJ87925.1| Holliday junction resolvase YqgF [Candidatus Solibacter usitatus
Ellin6076]
Length = 140
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
I ++DLG +RIGLAISDP R A P LVR ++ L + + ++
Sbjct: 3 PDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLL 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P+NM G+EG + R F ++++ VP WDERLT+V A ++L +S +KR
Sbjct: 63 GNPINMKGTEGRQSGWVREFA-TAMEKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRA 121
Query: 134 QKVDSIAAALILQEVLDRI 152
VD ++A ++LQ LD +
Sbjct: 122 AAVDKLSAVILLQSYLDSL 140
>gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025]
gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 139
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SDP A + K L + + F++G
Sbjct: 1 MRIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGK-KIKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|167586351|ref|ZP_02378739.1| Holliday junction resolvase-like protein [Burkholderia ubonensis
Bu]
Length = 149
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLMAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + +V + R
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAALRERDVRGRARAG 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|329770531|ref|ZP_08261909.1| Holliday junction resolvase [Gemella sanguinis M325]
gi|328836280|gb|EGF85949.1| Holliday junction resolvase [Gemella sanguinis M325]
Length = 142
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ I +D G+K IG+A+SD A + + + + N+ I+G
Sbjct: 4 KRIMGLDYGSKTIGVAVSDLLGLTAQGIETININEQIKDFKIKRIKELVNEHNVGKIIVG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 64 LPKNMDNSIGFRGEATLYFVEVLKKKIKSVEIILQDERLTTMGAERVLLEANVSRKKRKN 123
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD+++
Sbjct: 124 VIDKMAAVLILQTYLDKLN 142
>gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
Length = 154
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R FV + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFVQELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 122 VIDQAAAVIILQQALESERVSGKAPG 147
>gi|152976801|ref|YP_001376318.1| Holliday junction resolvase-like protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|189046085|sp|A7GT65|RUVX_BACCN RecName: Full=Putative Holliday junction resolvase
gi|152025553|gb|ABS23323.1| Holliday junction resolvase YqgF [Bacillus cytotoxicus NVH 391-98]
Length = 137
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + + + + + N+ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEEREIFGFDRVSELVKQYNVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + + + + + + WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQRYAE-SLRELLQLEVILWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
VD +AA +ILQ LD
Sbjct: 120 VVDKMAAVVILQGYLDS 136
>gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
Length = 139
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQ-RIAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|225574862|ref|ZP_03783472.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
10507]
gi|225037936|gb|EEG48182.1| hypothetical protein RUMHYD_02940 [Blautia hydrogenotrophica DSM
10507]
Length = 152
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SDP A + RK K+ QT + + I + ++
Sbjct: 1 MRILGLDFGSKTVGVAVSDPLGLTAQGVEIIRRKSENKLRQTLARIEALIQEYEVETLVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN + G R + F +M+ R+ +P V WDERLTTV A + L++ V R+ R
Sbjct: 61 GLPKNMNNTMGDRAQKSLEF-RDMLVRRTGLPVVMWDERLTTVEANRTLMESGVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLES 157
VD +AA ILQ LD +
Sbjct: 120 DYVDELAAIFILQGYLDAQRIRKE 143
>gi|326803430|ref|YP_004321248.1| RNAse H domain protein, YqgF family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651353|gb|AEA01536.1| RNAse H domain protein, YqgF family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 140
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + L I + +IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPFGWTAQGIETIKIDEEAGKFGFSRLRQLIEDYQVEKIVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRI 133
LP NMN +EGPR ++R + I+ +P + DERLTT +++ LI+ +VSRKKR
Sbjct: 61 LPKNMNNTEGPRAEASRHYGDMAIE-LFDLPVFYQDERLTTQQSERFLIEAADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRISF 154
+ +D +AA LILQ LD S
Sbjct: 120 KVIDKLAAVLILQNYLDSHSH 140
>gi|94967587|ref|YP_589635.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
gi|124107438|sp|Q1IU89|RUVX_ACIBL RecName: Full=Putative Holliday junction resolvase
gi|94549637|gb|ABF39561.1| Holliday junction resolvase YqgF [Candidatus Koribacter versatilis
Ellin345]
Length = 153
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D GT+RIGLA+SDP A L+RK L S I I ++GL
Sbjct: 8 HGRILALDFGTRRIGLAVSDPLGITAQGLQTLLRKNKRTDLAALRSVIEQNEIREIVVGL 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL ++G++ R F ++++ +P WDER T+V A ++L + +S KKR +
Sbjct: 68 PLRLSGADSSSTEKAREFAAW-LEKEFALPVHMWDERFTSVEANRVLRESEMSIKKRGEA 126
Query: 136 VDSIAAALILQEVLDRI 152
VD ++A LILQ L+R
Sbjct: 127 VDRLSAVLILQAFLERR 143
>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
NZ131]
gi|226695308|sp|B5XJ01|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131]
Length = 139
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV ++ + + I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTNGPRVDASITYGSH-IEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 120 KVIDKLAAQLILQNYLNR 137
>gi|163942136|ref|YP_001647020.1| Holliday junction resolvase-like protein [Bacillus
weihenstephanensis KBAB4]
gi|229013604|ref|ZP_04170735.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
gi|229032036|ref|ZP_04188019.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|229062082|ref|ZP_04199407.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|229135209|ref|ZP_04264008.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|229169130|ref|ZP_04296845.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|229175060|ref|ZP_04302578.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|226725488|sp|A9VI07|RUVX_BACWK RecName: Full=Putative Holliday junction resolvase
gi|163864333|gb|ABY45392.1| Holliday junction resolvase YqgF [Bacillus weihenstephanensis
KBAB4]
gi|228608428|gb|EEK65732.1| Holliday junction resolvase [Bacillus cereus MM3]
gi|228614358|gb|EEK71468.1| Holliday junction resolvase [Bacillus cereus AH621]
gi|228648251|gb|EEL04287.1| Holliday junction resolvase [Bacillus cereus BDRD-ST196]
gi|228717234|gb|EEL68909.1| Holliday junction resolvase [Bacillus cereus AH603]
gi|228729281|gb|EEL80275.1| Holliday junction resolvase [Bacillus cereus AH1271]
gi|228747663|gb|EEL97535.1| Holliday junction resolvase [Bacillus mycoides DSM 2048]
Length = 137
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+A+SD A + ++ + + N+ ++G
Sbjct: 1 MRILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRNLLQLEVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGFLDS 136
>gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces
bingchenggensis BCW-1]
Length = 154
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 64/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + + L + + ++G
Sbjct: 2 RRGRRIAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +++G EGP R F R VP DER+TTV+A Q L V+ KK
Sbjct: 62 LPRSLSGREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ L+ + G
Sbjct: 122 VVDQAAAVVILQSALETERVSGRAPG 147
>gi|320547640|ref|ZP_08041925.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
gi|320447715|gb|EFW88473.1| crossover junction endodeoxyribonuclease [Streptococcus equinus
ATCC 9812]
Length = 139
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + L + N+ F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGVEIIQIDEEAGEFGFERLGELVKQYNVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTEGPRVEASKAYGDQ-IKELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans
UA159]
gi|32130029|sp|Q8DRX8|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase
gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 139
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SDP A + K L + + F++G
Sbjct: 1 MRIIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDRLADLVKDYKVEKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGK-KIKELFDLPVEYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
Length = 139
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
Length = 139
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQ-RIAELFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|189466359|ref|ZP_03015144.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
17393]
gi|189434623|gb|EDV03608.1| hypothetical protein BACINT_02734 [Bacteroides intestinalis DSM
17393]
Length = 140
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ L+ ++ E + ++GL
Sbjct: 1 MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTHELLAFILD---YVGKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + FV + + +P + DER T+V A + + + + +K R
Sbjct: 58 PKQMNNEASENMKRIEPFVRLLKKKLPEMPVEYVDERFTSVLAHRTMREAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ F+
Sbjct: 118 ALVDEISATIILQSYLENKRFI 139
>gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str.
K-12 substr. MG1655]
Length = 180
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 44 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 103
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 104 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 162
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 163 VDSASAVIILESYFEQ 178
>gi|138896124|ref|YP_001126577.1| hypothetical protein GTNG_2487 [Geobacillus thermodenitrificans
NG80-2]
gi|196250077|ref|ZP_03148771.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
gi|167012727|sp|A4IR78|RUVX_GEOTN RecName: Full=Putative Holliday junction resolvase
gi|134267637|gb|ABO67832.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210261|gb|EDY05026.1| Holliday junction resolvase YqgF [Geobacillus sp. G11MC16]
Length = 138
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIG 74
+DLGTK +G+A+SD A + ++ L + I + ++G
Sbjct: 1 MRTLGLDLGTKTLGVAVSDEFGWTAQGLETIAIDEERGHYGFERLRAIIDEYGVDTIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMNG+ GPR ++ F + + +P V WDERL+T++A+++LI +VSRKKR +
Sbjct: 61 WPKNMNGTLGPRAEASERFAA-KLREEFSLPVVLWDERLSTMAAERMLIAADVSRKKRRK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AAA+ILQ LD
Sbjct: 120 VIDKMAAAVILQSYLDSKR 138
>gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831]
gi|32130032|sp|Q8EPT1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase
gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 137
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K IG+A+SD A ++ EL I+ I IIG
Sbjct: 1 MKIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ G R +++ + ++ I++ +P WDERLTT++A+++L++ ++SR KR +
Sbjct: 61 LPKNMNGTIGERGEASQRYANH-IEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKK 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD+
Sbjct: 120 VIDKMAAVMILQGYLDQ 136
>gi|325529367|gb|EGD06294.1| Holliday junction resolvase-like protein [Burkholderia sp. TJI49]
Length = 149
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R+
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVSWVDERYSSVEAEAGLRERNVRGRARVD 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|307326783|ref|ZP_07605975.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
4113]
gi|306887546|gb|EFN18540.1| Holliday junction resolvase YqgF [Streptomyces violaceusniger Tu
4113]
Length = 154
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 65/146 (44%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + + L + + ++G
Sbjct: 2 RRGRRIAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +++G EGP R F + R VP DER+TTV+A Q L V+ KK
Sbjct: 62 LPRSLSGREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ L+ + G
Sbjct: 122 VVDQAAAVVILQSALETERVSGRAPG 147
>gi|221201078|ref|ZP_03574118.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2M]
gi|221206470|ref|ZP_03579483.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2]
gi|221213802|ref|ZP_03586776.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD1]
gi|221166591|gb|EED99063.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD1]
gi|221173779|gb|EEE06213.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2]
gi|221178928|gb|EEE11335.1| conserved hypothetical protein TIGR00250 [Burkholderia multivorans
CGD2M]
Length = 149
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ + + NV + R
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARAD 125
Query: 135 KVDSIAAALILQEVLDRISFLE 156
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHE 147
>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
05ZYH33]
gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
98HAH33]
gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|253750983|ref|YP_003024124.1| Holliday junction resolvase [Streptococcus suis SC84]
gi|253752883|ref|YP_003026023.1| Holliday junction resolvase [Streptococcus suis P1/7]
gi|253754708|ref|YP_003027848.1| Holliday junction resolvase [Streptococcus suis BM407]
gi|167016513|sp|A4VYN8|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
gi|167016515|sp|A4VSF0|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
Length = 139
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ + +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGD-LLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|94991373|ref|YP_599473.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10270]
gi|118597223|sp|Q1JEI0|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10270]
Length = 139
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + PRV ++ + ++ I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTNSPRVDASITYGNH-IEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 120 KVIDKLAAQLILQNYLNR 137
>gi|85858514|ref|YP_460716.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
gi|146325615|sp|Q2LR42|RUVX_SYNAS RecName: Full=Putative Holliday junction resolvase
gi|85721605|gb|ABC76548.1| 4-amino-4-deoxychorismate lyase [Syntrophus aciditrophicus SB]
Length = 150
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D G KRIG+A+ D A ++RK + S + T ++ +IG P
Sbjct: 1 MRILGLDYGEKRIGVALCDELGLTAQALTTVIRKSWRNDVGIIASLVRTYDVEKIVIGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L ++G+EG + F ++ + +P + WDE LTT A++IL V +KR V
Sbjct: 61 LRLDGTEGIQCEKVVRFAR-RLEAALGIPVIRWDETLTTKEAEEILSRSGVPPRKRRGVV 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA+LILQ LD IS
Sbjct: 120 DRLAASLILQSYLDAIS 136
>gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1
GAS]
gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS5005]
gi|32130060|sp|Q99XP4|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase
gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS5005]
Length = 139
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV ++ + ++ I+ +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTNGPRVDASITYGNH-IEHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ L+R
Sbjct: 120 KVIDKLAAQLILQNYLNR 137
>gi|58040808|ref|YP_192772.1| DNA integration/recombination/invertion protein [Gluconobacter
oxydans 621H]
gi|62900900|sp|Q5FND1|RUVX_GLUOX RecName: Full=Putative Holliday junction resolvase
gi|58003222|gb|AAW62116.1| DNA integration/recombination/invertion protein [Gluconobacter
oxydans 621H]
Length = 160
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + DL L+ Q + +D G+K IG+A++D A P L R+K+ + A EL
Sbjct: 1 MPLFNPHDLRNLLQSGQRVLGLDPGSKTIGVALTDVSLMLASPLIGLKRRKLGENAQELA 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ T+++ A ++GLPL+++GS GP + + + K+ +P WDERL++ + +
Sbjct: 61 KIVRTQDVGALVVGLPLSLDGSFGPAARAASDWTQ-ALSEKLGIPAGLWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
LI D +++R +R + VD +AAA +LQ LD
Sbjct: 120 FLIKDADMTRGRRAEVVDKMAAAYMLQGWLD 150
>gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
Length = 139
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I + +P + DERLTTV+A+++LI+ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASKAYGE-KIAQLFQIPVEYQDERLTTVAAERMLIEQADVSRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|288906372|ref|YP_003431594.1| hypothetical protein GALLO_2188 [Streptococcus gallolyticus UCN34]
gi|306832418|ref|ZP_07465571.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325979385|ref|YP_004289101.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288733098|emb|CBI14679.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304425458|gb|EFM28577.1| crossover junction endodeoxyribonuclease [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325179313|emb|CBZ49357.1| putative holliday junction resolvase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 139
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLEELVKQYKVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++A+ I+ +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTEGPRVEASKAYGD-KINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|154504518|ref|ZP_02041256.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
gi|153795000|gb|EDN77420.1| hypothetical protein RUMGNA_02022 [Ruminococcus gnavus ATCC 29149]
Length = 148
Score = 136 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D GTK +G+AISD A + RK K+ +T + + + ++
Sbjct: 1 MRIMGLDYGTKTVGVAISDALGLTAQGIETIQRKEENKLRRTLARIEELVREYEVDTIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +MN G R + F + R+ + V WDERLTTV A++ LI+ V R+ R
Sbjct: 61 GFPKHMNNDVGERAKKSLEFKEM-LVRRTGLDVVMWDERLTTVEAERTLIESQVRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
Q +D IAA ILQ LD I
Sbjct: 120 QYIDKIAAVFILQGYLDSI 138
>gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus
ATCC 27064]
gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
Length = 157
Score = 136 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V + + + ++G
Sbjct: 5 RRGRRLALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPIEIVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++NG EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 65 LPRSLNGREGPAAKKVRTFAGEVARGVAPVPVRLVDERMTTVTATQGLRASGVKAKKGRS 124
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ L+ S G
Sbjct: 125 VVDQAAAVVILQNALESERAAGSPPG 150
>gi|171322539|ref|ZP_02911329.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
gi|171092132|gb|EDT37543.1| Holliday junction resolvase YqgF [Burkholderia ambifaria MEX-5]
Length = 149
Score = 136 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVISNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R +
Sbjct: 67 LPMHPDGTPHEMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAE 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
Length = 137
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G + IG+AISDP A + RK + + I + ++ I+GL
Sbjct: 1 MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR
Sbjct: 61 PKNMNNTIGPQAKKVKTFVK-ELRKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119
Query: 136 VDSIAAALILQEVLD 150
+DS+AA ILQ LD
Sbjct: 120 IDSVAATYILQTYLD 134
>gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
Length = 139
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + +K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|323705257|ref|ZP_08116832.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535159|gb|EGB24935.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 140
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D+G K IG+A+SDP A + R+ + E+ I + ++G P
Sbjct: 1 MRTIGLDVGDKTIGIAVSDPSGLIAQGIKTIRRESLDNDVFEIKKIIDAFKVEEIVVGFP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMNG+ G + FV + ++ +P + WDERLTTV A ++L++ ++ R KR +
Sbjct: 61 KNMNGTIGAQGQKVINFVEY-LKEEIDLPIMLWDERLTTVEANRMLVENADMRRDKRKKV 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD
Sbjct: 120 IDKLAATIILQGYLDYKR 137
>gi|166031235|ref|ZP_02234064.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
gi|166029082|gb|EDR47839.1| hypothetical protein DORFOR_00922 [Dorea formicigenerans ATCC
27755]
Length = 144
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G++ +G+A+SDP A + RK K+ +T + + + ++
Sbjct: 1 MRIMGLDYGSRTVGVAVSDPLGITAQAVETICRKDENKLRKTCARIEELVAEYEVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MN G R + F I R+ + V WDERLTTVSA++ LI+ V R+ R
Sbjct: 61 GLPKHMNNDIGDRAEKSMQFGEM-IGRRTGLEVVMWDERLTTVSAERTLIENKVRREDRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D IAA ILQ LD
Sbjct: 120 KYIDQIAAVFILQGYLDS 137
>gi|78065437|ref|YP_368206.1| Holliday junction resolvase-like protein [Burkholderia sp. 383]
gi|146325557|sp|Q39J04|RUVX_BURS3 RecName: Full=Putative Holliday junction resolvase
gi|77966182|gb|ABB07562.1| Holliday junction resolvase YqgF [Burkholderia sp. 383]
Length = 149
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+A+ + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R +
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAE 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
Length = 139
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|317495258|ref|ZP_07953628.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
gi|316914680|gb|EFV36156.1| hypothetical protein HMPREF0432_00230 [Gemella moribillum M424]
Length = 141
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ I +D G+K IG+A+SD A + + + + NI ++G
Sbjct: 4 KRIMGLDYGSKTIGVAVSDLLGMTAQGVETININEQVKDFKIKRIKELVNEYNIGKIVVG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NM+ S G R +T FV + + V + DERLTT+ A+++L++ NVSRKKR
Sbjct: 64 LPKNMDNSIGFRGEATLYFVEVLKKKIKSVEVILQDERLTTMGAERVLLEANVSRKKRKD 123
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA LILQ LD+
Sbjct: 124 VIDKMAAVLILQTYLDK 140
>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
Length = 142
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR--KKVTQTALELLSFITTENIAAFIIG 74
+ +D+GT IG+AISD A + R + Q L I ++++ ++G
Sbjct: 1 MKVLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GP +AF + + + WDERLTTV+A+++L+ +VSRKKR +
Sbjct: 61 LPKNMNGTIGPSGELCQAFAE-KLKERTNLKVELWDERLTTVAAEKMLVSADVSRKKRKK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LDR
Sbjct: 120 VIDKMAAVMILQGYLDRNP 138
>gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
Length = 137
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G + IG+AISDP A + RK + + I + ++ I+GL
Sbjct: 1 MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ + FV + + + + DERLTTVSA ++LI+ NVSRKKR
Sbjct: 61 PKNMNNTIGPQAKKVKTFVK-ELRKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDV 119
Query: 136 VDSIAAALILQEVLD 150
+DS+AA ILQ LD
Sbjct: 120 IDSVAATYILQTYLD 134
>gi|161525692|ref|YP_001580704.1| Holliday junction resolvase-like protein [Burkholderia multivorans
ATCC 17616]
gi|189349586|ref|YP_001945214.1| Holliday junction resolvase-like protein [Burkholderia multivorans
ATCC 17616]
gi|226725496|sp|A9AFI6|RUVX_BURM1 RecName: Full=Putative Holliday junction resolvase
gi|160343121|gb|ABX16207.1| Holliday junction resolvase YqgF [Burkholderia multivorans ATCC
17616]
gi|189333608|dbj|BAG42678.1| putative holliday junction resolvase [Burkholderia multivorans ATCC
17616]
Length = 149
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ + + NV + R
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARTD 125
Query: 135 KVDSIAAALILQEVLDRISFLE 156
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHE 147
>gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 140
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G IG+A+SD A + R+ + + I +N+ + GLP
Sbjct: 4 GRIMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GP+ F +I + + FWDERLTTVSA+++LI +VSRK R + +
Sbjct: 64 KNMNGTVGPQAEKVMKFCE-LIKEETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKKVI 122
Query: 137 DSIAAALILQEVLDRISF 154
D +AA LILQ LD F
Sbjct: 123 DKLAAVLILQNYLDFKKF 140
>gi|160947667|ref|ZP_02094834.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
gi|158446801|gb|EDP23796.1| hypothetical protein PEPMIC_01602 [Parvimonas micra ATCC 33270]
Length = 148
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D+G + IG+A+SDP A + R+ + + L + I ENI ++GL
Sbjct: 8 MNRYMALDVGDRTIGVAVSDPLFIMAEGYSTIFRESIEKDLESLKNIIVKENIIKVVVGL 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P NMN + GP+ +FV + + V DERLTTVSA++ILI+ N+SRKK
Sbjct: 68 PKNMNNTIGPQGEKVLSFVDELKDFLVKNSFDIEIVMQDERLTTVSAERILIEGNMSRKK 127
Query: 132 RIQKVDSIAAALILQEVLDR 151
R + +D +AA ILQ LDR
Sbjct: 128 RKKVIDKVAATYILQSYLDR 147
>gi|238916712|ref|YP_002930229.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
gi|259495704|sp|C4Z578|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
Length = 140
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIAAFII 73
I +D+GTK +G+A+SDP A P + RK+ + T + I+ ++ ++
Sbjct: 1 MRIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NM+ + G R + F ++R+ +P WDERLTTV A ++L + + R+ R
Sbjct: 61 GYPKNMDDTIGERAKACEEFAA-ALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+D +AA IL+ ++
Sbjct: 120 TVIDQLAAVFILRGYMES 137
>gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMG 18311]
gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus CNRZ1066]
gi|62900908|sp|Q5LXP0|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase
gi|62900909|sp|Q5M292|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase
gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG
18311]
gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus
CNRZ1066]
Length = 139
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTEGPRVEASKAYGD-KIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
Length = 139
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPRV +++A+ + +I + +P + DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNSSGPRVEASQAYGN-LIQEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDRI
Sbjct: 120 KVIDKLAAQLILQNYLDRI 138
>gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
Length = 139
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SDP A + K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGAMIAEKF-GMPVDYQDERLTTVAAERMLIEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|227514537|ref|ZP_03944586.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
ATCC 14931]
gi|227087094|gb|EEI22406.1| crossover junction endodeoxyribonuclease [Lactobacillus fermentum
ATCC 14931]
Length = 145
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A SDP A + + + + + + +A F++G
Sbjct: 1 MRLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV + R + +++ + +P + DERLTTV A ++L++ +VSR+K+
Sbjct: 61 LPKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDELAATLILQNYLDR 137
>gi|171778528|ref|ZP_02919655.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282751|gb|EDT48175.1| hypothetical protein STRINF_00507 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 139
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGVEIIRIDEEAGEFGFERLGELVKQYKVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++ + I++ +P + DERLTTV A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTEGPRVEASKVYGD-KINKLFNIPVDYQDERLTTVQAERMLVEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|218899555|ref|YP_002447966.1| hypothetical protein TIGR00250 [Bacillus cereus G9842]
gi|228902914|ref|ZP_04067055.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
gi|228910222|ref|ZP_04074040.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228967461|ref|ZP_04128490.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|229098858|ref|ZP_04229794.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|229105020|ref|ZP_04235674.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|226725485|sp|B7IYP0|RUVX_BACC2 RecName: Full=Putative Holliday junction resolvase
gi|218541329|gb|ACK93723.1| conserved hypothetical protein TIGR00250 [Bacillus cereus G9842]
gi|228678397|gb|EEL32620.1| Holliday junction resolvase [Bacillus cereus Rock3-28]
gi|228684531|gb|EEL38473.1| Holliday junction resolvase [Bacillus cereus Rock3-29]
gi|228792238|gb|EEM39811.1| Holliday junction resolvase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228849386|gb|EEM94222.1| Holliday junction resolvase [Bacillus thuringiensis IBL 200]
gi|228856698|gb|EEN01217.1| Holliday junction resolvase [Bacillus thuringiensis IBL 4222]
Length = 137
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+A+SD A + ++ + + N+ ++G
Sbjct: 1 MRILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGFLDS 136
>gi|239787333|emb|CAX83809.1| Resolvase family protein, holliday junction-type, YqgF-like
[uncultured bacterium]
Length = 161
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
Q + +ID G + +G+A+SD + P F + K L + I ++
Sbjct: 9 TKGQRLLAIDYGDRFLGVAVSDIMWHISTP-LFPIDSKSCNAFQALGALIDQHACGGIVV 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P+NMNGSEGP R F + +P +DERL+TV+A++ +++ ++SRKKR
Sbjct: 68 GYPINMNGSEGPACERVREFCQKIKKFFPSIPIGLFDERLSTVAAERNMVEADMSRKKRK 127
Query: 134 QKVDSIAAALILQEVLDRISF 154
QKVDS+AA+ +LQ LD +
Sbjct: 128 QKVDSLAASYVLQGTLDYLRN 148
>gi|260578809|ref|ZP_05846716.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
gi|258603107|gb|EEW16377.1| Holliday junction resolvase [Corynebacterium jeikeium ATCC 43734]
Length = 155
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 59/140 (42%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+GT RIG+AISDP A P + + + ++
Sbjct: 12 PGRGRRLGLDVGTVRIGVAISDPDCILATPVETVQATADDADVQRVAEICRENFVVEIVV 71
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ + G+ + F + + +P DER++T++A Q V+ KK
Sbjct: 72 GLPVALRGNHTQSTLNAEEFARLVKEELPDIPLRMVDERMSTMAATQAFHASGVNSKKGR 131
Query: 134 QKVDSIAAALILQEVLDRIS 153
+K+D AA ILQ LD
Sbjct: 132 KKIDQAAAVHILQGWLDTRR 151
>gi|323490024|ref|ZP_08095245.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
gi|323396320|gb|EGA89145.1| Holliday junction resolvase-like protein [Planococcus donghaensis
MPA1U2]
Length = 138
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K IG+AISDP A + + + L I + ++G
Sbjct: 1 MRIIGLDVGSKTIGVAISDPMGWTAQGIETIKINEAIEEFGMERLGELIKQYEVTEAVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN S GPR ++ F ++ +P V WDERLTT +A+++LI +VSRK R +
Sbjct: 61 YPKNMNNSIGPRAEASEKFAA-LLKEAYSIPVVLWDERLTTSAAEKMLISADVSRKNRKK 119
Query: 135 KVDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVMILQGYLD 135
>gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
Length = 139
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP A P + R K + +I+ ++GL
Sbjct: 1 MSRIMGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV +I +++ V+ DERLTT+ ++ +LIDM+V R+ R
Sbjct: 61 PKNMNNTMGPQSMRIISFVD-LIKKRIDTEIVYQDERLTTIQSESVLIDMSVRRENRKAH 119
Query: 136 VDSIAAALILQEVLDRISF 154
+D IAA+ ILQ LDR +
Sbjct: 120 IDKIAASFILQTYLDRRNN 138
>gi|229163335|ref|ZP_04291287.1| Holliday junction resolvase [Bacillus cereus R309803]
gi|228620116|gb|EEK76990.1| Holliday junction resolvase [Bacillus cereus R309803]
Length = 137
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+A+SD A + ++ + + N+ ++G
Sbjct: 1 MRILGLDVGTKTVGVAMSDEMGWTAQGLETIRINEERGHFGFDRISELVKQYNVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGFLDS 136
>gi|172058081|ref|YP_001814541.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
gi|171990602|gb|ACB61524.1| Holliday junction resolvase YqgF [Exiguobacterium sibiricum 255-15]
Length = 140
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
+ +D+G+K IG+A+SD A + + L + I + +I
Sbjct: 1 MKRAIGLDVGSKTIGVAVSDLMGWTAQGVETIKWTEPEYPVAFKRLEAIIKEYGVEIIVI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMNGS GPR ++ AF I+ + + V DERLTT+ A+++LID +VSRKKR
Sbjct: 61 GHPKNMNGSIGPRAEASEAFAR-EIETQTGLSTVLVDERLTTMQAERMLIDADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q +D +AA +ILQ LDR +
Sbjct: 120 QVIDKMAAVMILQSYLDRAN 139
>gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC
10712]
Length = 156
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 61/136 (44%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 4 RRGRRIAVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEVVVG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +++G EGP RAF M VP DER+TTV+A Q L V KK
Sbjct: 64 LPRSLSGREGPAATKVRAFAGEMAKGIAPVPVRLVDERMTTVTATQGLRASGVKAKKGRS 123
Query: 135 KVDSIAAALILQEVLD 150
+D AA +ILQ L+
Sbjct: 124 VIDQAAAVIILQNALE 139
>gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
Length = 163
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 60/137 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 11 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYEPIEVVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 71 LPRSLKGGEGPAAAKVRGFARELARGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 130
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ+ L+
Sbjct: 131 VIDQAAAVIILQQALES 147
>gi|293372829|ref|ZP_06619207.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
gi|292632204|gb|EFF50804.1| RNAse YqgF [Bacteroides ovatus SD CMC 3f]
Length = 141
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ P I +ID G KR G+A+SD + A+ + ++ E +I E + I
Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGE---YIAKEPVERII 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP MN + + FV ++ +P + DER T+V A + +++ + +K R
Sbjct: 58 IGLPKQMNNEVSENMKNIEPFVRSLKKCYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117
Query: 133 --IQKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141
>gi|226941795|ref|YP_002796869.1| Holliday junction resolvase-like protein [Laribacter hongkongensis
HLHK9]
gi|226716722|gb|ACO75860.1| Putative Holliday junction resolvase [Laribacter hongkongensis
HLHK9]
Length = 155
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
D G RIG+A+ D AHP L + + I I+ ++GLP
Sbjct: 5 GSWLGFDFGEARIGIAVGDRLVGIAHPLETLSAPDNDSRFARIAALIGEWQISGLVVGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ R F + + +P V DER +++ A+ +L + +K+ +
Sbjct: 65 THADGTPHEMTRLARRFAQ-RLHGRFGLPVVLVDERHSSLLAEDLLRESGRRGRKQKPVL 123
Query: 137 DSIAAALILQEVLDR 151
D +AA +ILQ D+
Sbjct: 124 DQVAAQVILQSFFDQ 138
>gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
XylebKG-1]
gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces cf. griseus
XylebKG-1]
Length = 154
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 60/146 (41%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F VP DER+TTV+A Q + V KK
Sbjct: 62 LPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ + G
Sbjct: 122 VIDQAAAVVILQNALESERASGNPPG 147
>gi|182439828|ref|YP_001827547.1| hypothetical protein SGR_6035 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 161
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 60/146 (41%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 9 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVLG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F VP DER+TTV+A Q + V KK
Sbjct: 69 LPRSLGGGEGPAAAKVREFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 128
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ + G
Sbjct: 129 VIDQAAAVVILQNALESERASGNPPG 154
>gi|227874508|ref|ZP_03992680.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
gi|227839652|gb|EEJ50110.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Oribacterium sinus F0268]
Length = 141
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I ++D G+K +GLAI+DP P + R+ K+ +T E+ + ++
Sbjct: 1 MRILALDYGSKTVGLAITDPLGIIVQPLKTIWREREGKLRKTVEEIQETCKEYQVEELVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +M+GSEG RV AF + +K+ +P +DERL+T+ A++IL + V + ++
Sbjct: 61 GYPCHMDGSEGERVERVLAFQEM-LKKKIELPIHLYDERLSTMEAEEILRENGVPKDRQK 119
Query: 134 QKVDSIAAALILQEVL 149
+ +D +AA +IL++ L
Sbjct: 120 EVLDQVAAQVILEDYL 135
>gi|332637231|ref|ZP_08416094.1| Holliday junction resolvase-like protein [Weissella cibaria KACC
11862]
Length = 144
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + + + + F++
Sbjct: 1 MGRVMGLDVGSRTVGVAVSDLLGWTAQGVEIIRINEDEKEFGIARMKELVAQFQPTGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + RA+ ++ +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVDAARAYGD-LLTETFGLPIDFQDERLTTVEAERMLVEEADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLDR 151
Q +D +AAALILQ LDR
Sbjct: 120 KQVIDKLAAALILQNYLDR 138
>gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
Length = 138
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D+G KRIG+A+SDP FA F+ K + L+L + + N+ +IG
Sbjct: 1 MGRILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNK--EWLLKLDESLISLNVEMLLIGN 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL NG+ GP + + R ++ V WDER TT AQQ+L++ NVSRKKR +K
Sbjct: 59 PLRTNGTAGPETDKIKNIAAELKIRYPHISIVLWDERFTTSIAQQVLLEGNVSRKKRKEK 118
Query: 136 VDSIAAALILQEVLD 150
VD +AAALILQ LD
Sbjct: 119 VDQLAAALILQNYLD 133
>gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
33331]
Length = 157
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 62/146 (42%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + I+G
Sbjct: 5 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEVIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF +P DER+TTV+A Q L V KK
Sbjct: 65 LPRSLGGGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRS 124
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ S+ G
Sbjct: 125 VIDQAAAVVILQNALESERASGSAPG 150
>gi|229019608|ref|ZP_04176421.1| Holliday junction resolvase [Bacillus cereus AH1273]
gi|229025846|ref|ZP_04182244.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|228735457|gb|EEL86054.1| Holliday junction resolvase [Bacillus cereus AH1272]
gi|228741688|gb|EEL91875.1| Holliday junction resolvase [Bacillus cereus AH1273]
Length = 137
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+A+SD A + ++ + + + ++G
Sbjct: 1 MRILGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYGVDKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q
Sbjct: 61 LPKNMNGTIGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVVILQGFLDS 136
>gi|25012082|ref|NP_736477.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
NEM316]
gi|54039588|sp|P67493|RUVX_STRA5 RecName: Full=Putative Holliday junction resolvase
gi|54042292|sp|P67492|RUVX_STRA3 RecName: Full=Putative Holliday junction resolvase
gi|118597222|sp|Q3JYN4|RUVX_STRA1 RecName: Full=Putative Holliday junction resolvase
gi|24413626|emb|CAD47703.1| Unknown [Streptococcus agalactiae NEM316]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGD-KITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|319408539|emb|CBI82192.1| putative resolvase [Bartonella schoenbuchensis R1]
Length = 159
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ I ++ L P Q IA +DLGTK IG+AISD F++PRP + RKK T AL L+
Sbjct: 1 MAVINIHEITTHLLPKQTIAGLDLGTKTIGIAISDISLTFSNPRPVIQRKKFTLDALTLV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
EN+ +IGLP+NM+GS GPRV +TR FV NM +PFVFWDERL+T++AQ+
Sbjct: 61 QIFNNENVGVAVIGLPVNMDGSNGPRVQATRTFVSNM-GAYTKIPFVFWDERLSTIAAQR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
L++M+VSR KR ++DS AAA ILQ VLDRI L ++G
Sbjct: 120 SLLEMDVSRAKRAARIDSAAAAFILQGVLDRIQNLNHTEG 159
>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SDP A + K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGTMIAEKF-GLPVDYQDERLTTVAAERMLIEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|260642386|ref|ZP_05415682.2| putative Holliday junction resolvase [Bacteroides finegoldii DSM
17565]
gi|260622253|gb|EEX45124.1| putative Holliday junction resolvase [Bacteroides finegoldii DSM
17565]
Length = 141
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ P I +ID G KR G+A+SD + A+ + ++ + +I E + I
Sbjct: 1 MCPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGD---YIAKEPVERII 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 IGLPKQMNNEVSENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDR 117
Query: 133 --IQKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141
>gi|295092925|emb|CBK82016.1| conserved hypothetical protein TIGR00250 [Coprococcus sp. ART55/1]
Length = 149
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA--- 70
I +D GTK +G+A+SDP + A P + RK K+ QT + + + A
Sbjct: 1 MRILGLDYGTKTVGVAVSDPLKMTAQPLETIERKSANKLRQTLARIEAILEEYGAAGERD 60
Query: 71 ----FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
++G P NMN SEG R +T+AF ++R+ + V WDERLTTV A++IL+D
Sbjct: 61 RIELIVLGYPKNMNNSEGDRCEATQAF-KEDLERRTGLEVVLWDERLTTVEAERILMDSG 119
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
V R+ R +D +AAA+ILQ LD
Sbjct: 120 VRRENRKTYIDKMAAAVILQNYLD 143
>gi|288574978|ref|ZP_06393335.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570719|gb|EFC92276.1| Holliday junction resolvase YqgF [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 138
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I ++D+GT RIG+A+SDP FA + +L +T+ +++ ++GLP
Sbjct: 3 RRIVALDMGTVRIGVAMSDPLGSFAQGVAVWDAE--GDWLSDLRDLVTSRDVSTVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ NG++GP + A + + + V WDER T+ A ++LI+ +VSRKKR +V
Sbjct: 61 IRENGTKGPSAENVEAKTEAVREAFPDLEIVMWDERYTSTIANRVLIEGDVSRKKRKGQV 120
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD +
Sbjct: 121 DKVAATVILQGYLDSLR 137
>gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 169
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 57/140 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+G+ RIG+A SDP A P + R + + L ++
Sbjct: 19 PGRGRRLGVDVGSVRIGVACSDPDGILATPVETVRRDRSGKHVRRLAELAAELGAVEVVV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + GP + R P DERLTTVSAQ+ L V K++
Sbjct: 79 GLPRTLADRTGPSALDAMELADTLAQRLAPTPVRLADERLTTVSAQRSLRAAGVRAKEQR 138
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D AA ILQ LD+
Sbjct: 139 AVIDQAAAVAILQSWLDQRR 158
>gi|294643795|ref|ZP_06721593.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
gi|294808455|ref|ZP_06767208.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
gi|292640884|gb|EFF59104.1| RNAse YqgF [Bacteroides ovatus SD CC 2a]
gi|294444383|gb|EFG13097.1| RNAse YqgF [Bacteroides xylanisolvens SD CC 1b]
Length = 141
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ P I +ID G KR G+A+SD + A+ + ++ E ++ E + I
Sbjct: 1 MYPMSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGE---YMAKEPVERII 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 IGLPKQMNNEVSENMKNIEPFVRSLNKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDR 117
Query: 133 --IQKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 QNKALVDEISATIILQTYLESKRF 141
>gi|239939939|ref|ZP_04691876.1| hypothetical protein SrosN15_02984 [Streptomyces roseosporus NRRL
15998]
gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL
11379]
gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 157
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 60/146 (41%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + I+G
Sbjct: 5 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVILG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F VP DER+TTV+A Q + V KK
Sbjct: 65 LPRSLGGGEGPAAAKVRDFAQVFARSIAPVPVRLVDERMTTVTAAQGMRASGVKSKKGRS 124
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ + G
Sbjct: 125 VIDQAAAVVILQNALESERASGNPPG 150
>gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2]
Length = 138
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
+DS +A +IL+ ++
Sbjct: 121 IDSASAVIILESYFEQ 136
>gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073]
gi|89109726|ref|AP_003506.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. W3110]
gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89]
gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536]
gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS]
gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC
8739]
gi|170082501|ref|YP_001731821.1| Holliday junction resolvase [Escherichia coli str. K-12 substr.
DH10B]
gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88]
gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a]
gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989]
gi|238902071|ref|YP_002927867.1| putative Holliday junction resolvase [Escherichia coli BW2952]
gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|256024542|ref|ZP_05438407.1| Holliday junction resolvase-like protein [Escherichia sp. 4_1_40B]
gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|307139634|ref|ZP_07498990.1| Holliday junction resolvase-like protein [Escherichia coli H736]
gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|67472397|sp|P0A8I1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase
gi|67472398|sp|P0A8I2|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase
gi|118597209|sp|Q0TDQ2|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase
gi|146325571|sp|Q1R778|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase
gi|167012719|sp|A8A489|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase
gi|167012720|sp|A1AFD5|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase
gi|189046095|sp|B1IT58|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase
gi|226725515|sp|B7MMD7|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase
gi|226725519|sp|B1XFA9|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase
gi|254767515|sp|B7LFL2|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase
gi|254767516|sp|B7MZP8|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase
gi|259495702|sp|C5A0L8|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase
gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073]
gi|1789318|gb|AAC75986.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12
substr. W3110]
gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89]
gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536]
gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS]
gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739]
gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. DH10B]
gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989]
gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88]
gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a]
gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82]
gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952]
gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1]
gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042]
gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034]
gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146]
gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407]
gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1
str. NRG 857C]
gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1]
gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1]
gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
153-1]
gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3]
gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431]
gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327]
gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1]
gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520]
gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482]
gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252]
gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007]
gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1]
gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167]
gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86]
gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 138
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + + +P + DERLTTV+A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQRVAE-LFGLPVDYQDERLTTVAAERMLVEQADISRSKRR 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|296875599|ref|ZP_06899670.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|296433396|gb|EFH19172.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SDP A + K L + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGTMIAEKF-GLPVDYQDERLTTVAAERMLIEQADISRSKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|254253087|ref|ZP_04946405.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
gi|124895696|gb|EAY69576.1| hypothetical protein BDAG_02337 [Burkholderia dolosa AUO158]
Length = 149
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R+
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVAWVDERYSSVEAEAGLRERNVRGRARVD 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus B4]
gi|254767522|sp|C1B4H5|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase
gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4]
Length = 178
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
ID+G+ RIG+A SDP A P + R K + +
Sbjct: 16 PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRIADIVEEYEAV 75
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
I+GLP + G G F + + +P DERLTTV+A + L + VS
Sbjct: 76 EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ + +D AA ILQ LD S
Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159
>gi|224539751|ref|ZP_03680290.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518629|gb|EEF87734.1| hypothetical protein BACCELL_04660 [Bacteroides cellulosilyticus
DSM 14838]
Length = 140
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ L+ ++ E + ++GL
Sbjct: 1 MSRILAIDYGKKRTGIAVSDTLQMIANGLTTVPTHELLTFILD---YVGKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + FV + + +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKRIEPFVRLLKKKLPAMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQSYLENKRF 138
>gi|282866221|ref|ZP_06275268.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
gi|282559005|gb|EFB64560.1| Holliday junction resolvase YqgF [Streptomyces sp. ACTE]
Length = 154
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 64/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER++TV+A Q L V+ KK
Sbjct: 62 LPRSLGGGEGPAAVKVRAFAQVLARAIAPVPVRLVDERMSTVTATQGLRASGVTSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ ++ G
Sbjct: 122 VIDQAAAVVILQNALESERASGAAPG 147
>gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150]
gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++A+ + I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTEGPRVEASKAYGN-KIKEIFGIPVDYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|229543745|ref|ZP_04432805.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
gi|229328165|gb|EEN93840.1| Holliday junction resolvase YqgF [Bacillus coagulans 36D1]
Length = 138
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL--VRKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+A+SD A + K + + ++G
Sbjct: 1 MKIMGLDVGSKTVGVAVSDALGWTAQGIETIAINEAKGKFGFDRVAELAQIHGVEKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NMN + GPR +++ + + +++ +P + WDERL+T A++IL++ +VSRKKR +
Sbjct: 61 FPKNMNNTIGPRAEASKVYAE-ELKKRLNLPVILWDERLSTAQAERILLEADVSRKKRKK 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA++ILQ LD
Sbjct: 120 VIDKMAASVILQGFLDS 136
>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
gi|259495714|sp|C0MGB3|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASKAYGD-RIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
G54]
gi|226695305|sp|B5E6E1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase
gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + T + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVKELVDTYKVERFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|282856373|ref|ZP_06265652.1| RNAse YqgF [Pyramidobacter piscolens W5455]
gi|282585744|gb|EFB91033.1| RNAse YqgF [Pyramidobacter piscolens W5455]
Length = 140
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+GT RIG+A+SDP FA EL + ++GL
Sbjct: 1 MPRIICLDVGTVRIGVAVSDPLGMFAQGIAVWKAD--GPWLDELERAFERYDTGCLLVGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ +G+ GP + V + R V +WDER +T +A L++ NVSR+KR Q
Sbjct: 59 PIREDGTIGPSAQHVQDVVKEIQRRFPMVTVRYWDERYSTCTATSYLLEGNVSRRKRKQS 118
Query: 136 VDSIAAALILQEVLD 150
VD IAAA+ILQ +D
Sbjct: 119 VDKIAAAVILQSYMD 133
>gi|125972677|ref|YP_001036587.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|167012716|sp|A3DBR5|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase
gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
1313]
Length = 141
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ID G RIG+AISDP A R V + + + I+G
Sbjct: 1 MRVLGIDYGDSRIGIAISDPLGWTAQALETITWRSDVEVPLKRISELVEEYGVKTVIVGF 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+G+ G R T F+ + R + + WDERLTTV+A + + +M + + K+
Sbjct: 61 PKNMDGTVGARGEKTIEFIDLLQQRIKDIEVIKWDERLTTVAANRTMYEMGIKKSKKKLV 120
Query: 136 VDSIAAALILQEVLDR 151
VD IAA ILQ LD
Sbjct: 121 VDQIAAVYILQGYLDS 136
>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 139
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL-SFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + E L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV ++RA+ + + +P + DERLTTV+A+++LI+ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASRAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
EDL933]
gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. Sakai]
gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. EC4024]
gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209396593|ref|YP_002272429.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4115]
gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. TW14359]
gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK2000]
gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK966]
gi|291284270|ref|YP_003501088.1| putative Holliday junction resolvase [Escherichia coli O55:H7 str.
CB9615]
gi|32130044|sp|Q8XCV0|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase
gi|226725516|sp|B5YQE7|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase
gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4115]
gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli]
gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. TW14359]
gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str.
CB9615]
gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC1212]
gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. G5101]
gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. 493-89]
gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. H 2687]
gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. USDA 5905]
gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. LSU-61]
gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1044]
gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1125]
Length = 138
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
+DS +A +IL+ ++
Sbjct: 121 IDSASAVIILESYFEQ 136
>gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
301]
gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
2457T]
gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046]
gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227]
gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str.
8401]
gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A]
gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5]
gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC
3083-94]
gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6
str. E2348/69]
gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ATCC 35469]
gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1]
gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026]
gi|254037998|ref|ZP_04872056.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|256019249|ref|ZP_05433114.1| Holliday junction resolvase-like protein [Shigella sp. D9]
gi|260845619|ref|YP_003223397.1| putative Holliday junction resolvase [Escherichia coli O103:H2 str.
12009]
gi|260857082|ref|YP_003230973.1| putative Holliday junction resolvase [Escherichia coli O26:H11 str.
11368]
gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str.
11128]
gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9]
gi|62901027|sp|Q83JS4|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase
gi|123342527|sp|Q0T0U3|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase
gi|126352258|sp|Q3YXS2|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase
gi|146325606|sp|Q31WL1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase
gi|167012718|sp|A7ZR72|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase
gi|226695304|sp|B2U0W9|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase
gi|226725518|sp|B7LYX9|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase
gi|226725520|sp|B7N7K2|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase
gi|226725522|sp|B1LDF8|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase
gi|226725523|sp|B7LPR6|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase
gi|254767514|sp|B7UHZ6|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase
gi|24053351|gb|AAN44421.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T]
gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A]
gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5]
gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94]
gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6
str. E2348/69]
gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1]
gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026]
gi|226839622|gb|EEH71643.1| Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11
str. 11368]
gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2
str. 12009]
gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H-
str. 11128]
gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017]
gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T]
gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W]
gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC
74-1112]
gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905]
gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83]
gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14]
gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010]
gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G]
gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68]
gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli 1180]
gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli 1357]
gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11]
gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120]
gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489]
gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863]
gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509]
gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253]
gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ECD227]
gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v]
gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82]
gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74]
gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74]
gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9]
gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70]
gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671]
gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71]
gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71]
gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6]
gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218]
gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272]
gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304]
gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227]
Length = 138
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50]
gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)]
gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli
BL21(DE3)]
Length = 138
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|317476773|ref|ZP_07936016.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
1_2_48FAA]
gi|316906948|gb|EFV28659.1| hypothetical protein HMPREF1016_03000 [Bacteroides eggerthii
1_2_48FAA]
Length = 141
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ L+ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTHELLAFILD---YVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + FV ++ + +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From
Escherichia Coli
Length = 138
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
R6]
gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
D39]
gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Hungary19A-6]
gi|182683176|ref|YP_001834923.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
JJA]
gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
P1031]
gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
70585]
gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974]
gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974M2]
gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200]
gi|32130028|sp|Q8DRE2|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase
gi|122279414|sp|Q04MP8|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase
gi|226695306|sp|B1I8I5|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase
gi|226695307|sp|B2IS28|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase
gi|254767527|sp|C1CAK0|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase
gi|254767529|sp|C1CBZ4|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase
gi|254767530|sp|C1CI84|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase
gi|254767531|sp|C1CP75|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase
gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae
D39]
gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae
Hungary19A-6]
gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200]
Length = 139
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + T + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|184154999|ref|YP_001843339.1| endonuclease [Lactobacillus fermentum IFO 3956]
gi|226731625|sp|B2GB27|RUVX_LACF3 RecName: Full=Putative Holliday junction resolvase
gi|183226343|dbj|BAG26859.1| endonuclease [Lactobacillus fermentum IFO 3956]
Length = 145
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A SDP A + + + + + + +A F++G
Sbjct: 1 MRLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV + R + +++ + +P + DERLTTV A ++L++ +VSR+K+
Sbjct: 61 LPKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 120 KVIDELAATLILQNYLD 136
>gi|82703594|ref|YP_413160.1| Holliday junction resolvase-like protein [Nitrosospira multiformis
ATCC 25196]
gi|146325582|sp|Q2Y653|RUVX_NITMU RecName: Full=Putative Holliday junction resolvase
gi|82411659|gb|ABB75768.1| Holliday junction resolvase YqgF [Nitrosospira multiformis ATCC
25196]
Length = 151
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
S + D G KRIG+AI + AHP L K + + +
Sbjct: 6 KASQPHAGTALAFDFGEKRIGVAIGNLELGLAHPLVTLSNKNKEECLKSIARLMDEWKPV 65
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP++ +G+E +R F + + + + V DER T++SA L + +V
Sbjct: 66 LLVVGLPVHADGTEHELTRRSRRFA-HRLQARFGIRTVLEDERYTSISASSALDEASVRG 124
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+++ Q +D IAA LILQ D+ +
Sbjct: 125 RRQKQVLDQIAAQLILQSYFDQRN 148
>gi|260663394|ref|ZP_05864285.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|260552246|gb|EEX25298.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 145
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A SDP A + + + + + + +A ++G
Sbjct: 1 MRLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV + R + +++ + +P + DERLTTV A ++L++ +VSR+K+
Sbjct: 61 LPKNMNNTEGPRVEAARHYGE-LLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDELAATLILQNYLDR 137
>gi|29833393|ref|NP_828027.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680]
gi|62901021|sp|Q827S3|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase
gi|29610516|dbj|BAC74562.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 156
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 4 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVLG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V KK
Sbjct: 64 LPRSLKGGEGPAAVKVRAFAQELARVIAPVPVRLMDERMTTVTASQGLRASGVKSKKGRS 123
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 124 VIDQAAAVIILQQALESERVSGKAPG 149
>gi|218130012|ref|ZP_03458816.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
gi|217987815|gb|EEC54141.1| hypothetical protein BACEGG_01595 [Bacteroides eggerthii DSM 20697]
Length = 141
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ L+ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTHELLAFILD---YVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + FV ++ + +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKRIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|295706694|ref|YP_003599769.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM B1551]
gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM 319]
Length = 138
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
+ +D+GTK IG+A+SD A + + Q+ L I ++ ++G
Sbjct: 1 MRVLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNG+ GPR + F N+ ++ + + WDERL+T++A+++L+ +VSRKKR +
Sbjct: 61 LPKNMNGTIGPRGEACIEFADNVKEKL-NIETMMWDERLSTMAAERVLLSADVSRKKRKK 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LD
Sbjct: 120 VIDKMAAVMILQGYLDS 136
>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
gi|254767526|sp|C0MAR3|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
equi 4047]
Length = 139
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + K L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASKAYGD-KIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|302385313|ref|YP_003821135.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
gi|302195941|gb|ADL03512.1| Holliday junction resolvase YqgF [Clostridium saccharolyticum WM1]
Length = 146
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A+SD A + R+ K+ +T + I I I+
Sbjct: 1 MRIMGLDYGSKTVGVAVSDLLGITAQGVETITREEENKLRKTCARIEELIREYEIETIIL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN S G R T F +I R + + WDERLTTV++++IL + V R+ R
Sbjct: 61 GYPKNMNNSAGQRAEKTEQFKEMLIRRT-GLNVILWDERLTTVASERILQESGVRREHRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA LILQ LD +
Sbjct: 120 AVIDQVAAGLILQGYLDSLP 139
>gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor
A3(2)]
gi|32130071|sp|Q9KXQ0|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase
gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 167
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 60/137 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 15 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 75 LPRSLKGGEGPAAAKVRRFTQELAKGIAPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 134
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ+ L+
Sbjct: 135 VIDQAAAVIILQQALES 151
>gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMD-9]
gi|122266781|sp|Q03IC4|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase
gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9]
gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
Length = 139
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTEGPRVEASKAYGD-KIKEIFNLPVDYQDERLTTVQAERMLVEQADVSRDKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|160889624|ref|ZP_02070627.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
gi|317479181|ref|ZP_07938318.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
gi|156860616|gb|EDO54047.1| hypothetical protein BACUNI_02050 [Bacteroides uniformis ATCC 8492]
gi|316904669|gb|EFV26486.1| hypothetical protein HMPREF1007_01434 [Bacteroides sp. 4_1_36]
Length = 141
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ Q L+ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQFLLD---YVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ + +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718]
gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718]
Length = 138
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDRI 152
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQR 137
>gi|169334466|ref|ZP_02861659.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
17244]
gi|169259183|gb|EDS73149.1| hypothetical protein ANASTE_00869 [Anaerofustis stercorihominis DSM
17244]
Length = 144
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIG 74
+ I ++D G RIG+A+SD A + R K + + ++ +I + I+G
Sbjct: 2 KKRILALDYGDSRIGVAVSDALHITAQGICVIKRTKNIEEDIEKIKKYIKEYDTGLVILG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PLN++G G R T F + K+ +P WDERL+T A++ L V+ +K+ +
Sbjct: 62 HPLNLSGERGTRALVTEEFCDI-LKEKIDIPVELWDERLSTKEAERALEAGGVNWRKKRE 120
Query: 135 KVDSIAAALILQEVLDRISFL 155
+D +AA +IL LD + L
Sbjct: 121 VIDMMAAQIILSSYLDYNNNL 141
>gi|169829318|ref|YP_001699476.1| putative Holliday junction resolvase [Lysinibacillus sphaericus
C3-41]
gi|168993806|gb|ACA41346.1| Putative Holliday junction resolvase [Lysinibacillus sphaericus
C3-41]
Length = 135
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+A+SD A + + + I F++G P
Sbjct: 1 MGLDVGSKTVGVAVSDALGWTAQGIETVKIDEANGEFGIDRIAELVKEYAITQFVVGFPT 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GPR ++ + +++ +P WDERLTT++A+++LI+ +VSR+KR Q +D
Sbjct: 61 NMNNTVGPRGEASENY-KKLLEETFSLPVTLWDERLTTMAAERMLIEADVSRRKRKQVID 119
Query: 138 SIAAALILQEVLDRIS 153
+AA +I+Q LD +
Sbjct: 120 KMAAVMIVQGYLDSKN 135
>gi|304316717|ref|YP_003851862.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778219|gb|ADL68778.1| Holliday junction resolvase YqgF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 140
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D+G K IG+AISDP A + R + LE+ + ++G P
Sbjct: 1 MRTIGLDVGDKTIGVAISDPSGLIAQGIKTIKRSNLDDDILEIKRIANSFKAEEIVVGFP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
NMNG+ G + FV ++ +++ +P + WDERLTTV A ++LI+ ++ R KR +
Sbjct: 61 KNMNGTIGSQGQKVINFVE-VLKKEINLPIMLWDERLTTVEASRMLIEGADMRRDKRKKV 119
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ LD
Sbjct: 120 IDKLAATIILQGYLD 134
>gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
Length = 139
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + Q L + +++ F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQ-KIQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii RHA1]
gi|118597220|sp|Q0S0N6|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase
gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1]
Length = 178
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
ID+G+ RIG+A SDP A P + R K + +
Sbjct: 16 PGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIADIVEEYEAV 75
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
I+GLP + G G F + + +P DERLTTV+A + L + VS
Sbjct: 76 EVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAARALRESGVSA 135
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ + +D AA ILQ LD S
Sbjct: 136 RGQRPVIDQAAAVAILQGWLDERS 159
>gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
110-3]
gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263]
Length = 138
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + + DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|167763508|ref|ZP_02435635.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
43183]
gi|329954513|ref|ZP_08295604.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
gi|167698802|gb|EDS15381.1| hypothetical protein BACSTE_01882 [Bacteroides stercoris ATCC
43183]
gi|328527481|gb|EGF54478.1| RNAse H domain protein, YqgF family [Bacteroides clarus YIT 12056]
Length = 141
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ ++ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGKKRTGIAVSDTLQMIANGLTTVPTHELLAFIMD---YVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKRIEPFVRSLQKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENRRF 138
>gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1]
gi|62901008|sp|Q7UG74|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase
gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease
[Rhodopirellula baltica SH 1]
Length = 173
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+AS+D GT RIG+AI DP A P + A + +E IAA+++
Sbjct: 13 PATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFIDLAKSERIAAWVV 72
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP++ +G E + +R F + +P +DER TTV+A + +RKK
Sbjct: 73 GLPIHCDGGESDKSKESRKFAAW-LKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTK 131
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
Q+VD++AA ++L+ L+ + G
Sbjct: 132 QRVDAVAAQVLLESFLEACRYRGELAG 158
>gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
Length = 154
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 63/146 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + + L + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R FV + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFVQELARMISPVPVRLVDERMTTVTASQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 122 VIDQAAAVVILQQALESERVSGKAPG 147
>gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
Length = 163
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 1 MSILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
M+ +S + + +DLGTK IGLA+SD GRR A P + R K T A +L
Sbjct: 1 MNRESFARFAESSRAGGARLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKL 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ +IGLPLNM+GSEGPR STRAFV + + +P + +DERL+T +
Sbjct: 61 AGIARQHGVGGLVIGLPLNMDGSEGPRAQSTRAFVR-NLAPILPLPVLLFDERLSTAAVT 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+ L++ + SR +R VD +AAA ILQ LD ++ L
Sbjct: 120 RTLLEADASRARRGDLVDKLAAAYILQGCLDVLAGL 155
>gi|68536114|ref|YP_250819.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
K411]
gi|146325565|sp|Q4JVF6|RUVX_CORJK RecName: Full=Putative Holliday junction resolvase
gi|68263713|emb|CAI37201.1| putative Hollyday junction resolvase [Corynebacterium jeikeium
K411]
Length = 155
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 59/140 (42%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+GT RIG+AISDP A P + ++ + ++
Sbjct: 12 PGRGRRLGLDVGTVRIGVAISDPDCILATPVETIQATADDADVQRVVEICRDNFVVEIVV 71
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ + G+ + F + + +P DER++T++A V+ KK
Sbjct: 72 GLPVALRGNHTQSTLNAEEFARLVKEELPDIPVRMVDERMSTMAATHAFHASGVNSKKGR 131
Query: 134 QKVDSIAAALILQEVLDRIS 153
+K+D AA ILQ LD
Sbjct: 132 KKIDQAAAVHILQGWLDTRR 151
>gi|107021941|ref|YP_620268.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
AU 1054]
gi|116688888|ref|YP_834511.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
HI2424]
gi|170732189|ref|YP_001764136.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
MC0-3]
gi|206561485|ref|YP_002232250.1| Holliday junction resolvase-like protein [Burkholderia cenocepacia
J2315]
gi|254246158|ref|ZP_04939479.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124107439|sp|Q1BYL0|RUVX_BURCA RecName: Full=Putative Holliday junction resolvase
gi|167012700|sp|A0K541|RUVX_BURCH RecName: Full=Putative Holliday junction resolvase
gi|226725494|sp|B1JWP0|RUVX_BURCC RecName: Full=Putative Holliday junction resolvase
gi|226725495|sp|B4ECT2|RUVX_BURCJ RecName: Full=Putative Holliday junction resolvase
gi|105892130|gb|ABF75295.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia AU 1054]
gi|116646977|gb|ABK07618.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia HI2424]
gi|124870934|gb|EAY62650.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|169815431|gb|ACA90014.1| Holliday junction resolvase YqgF [Burkholderia cenocepacia MC0-3]
gi|198037527|emb|CAR53464.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 149
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G KRIG+AI + R A + + + A ++G
Sbjct: 7 RDATLLAFDYGEKRIGVAIGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTD 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ LD++S E
Sbjct: 126 MLDAEAARVILQQYLDQLSDHEHH 149
>gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
Length = 141
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++DLGT RIG+A++DP FA +L + ++GL
Sbjct: 1 MKRIIALDLGTVRIGVAVTDPLGTFAQGVECWDAASG--WMGKLGELMAQYGTDRLLLGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G+EG R + R V FWDER T+ AQ +I+ ++SR+KR K
Sbjct: 59 PRKEDGTEGEMAAKVRETAGRIAKRYPQVQIRFWDERYTSRVAQSAMIEGDLSRRKRKGK 118
Query: 136 VDSIAAALILQEVLD 150
VD IAA+LILQ +D
Sbjct: 119 VDQIAASLILQNFID 133
>gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39]
gi|226725517|sp|B7NI12|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase
gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39]
Length = 138
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + + DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGIEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
Length = 157
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V + + + ++G
Sbjct: 5 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V+ KK
Sbjct: 65 LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 124
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ L+
Sbjct: 125 VIDQAAAVIILQTALES 141
>gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
Length = 154
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V + + + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP RAF + VP DER+TTV+A Q L V+ KK
Sbjct: 62 LPRSLRGGEGPAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ L+
Sbjct: 122 VIDQAAAVIILQTALES 138
>gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
Length = 139
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + Q L + ++ F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P V+ DERLTTV A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGQ-KIQELFKIPVVYQDERLTTVEAERMLIEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|119899749|ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72]
gi|167012690|sp|A1KB70|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase
gi|119672162|emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72]
Length = 156
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + + D G RIG+A+ + R A+P + + + + A +
Sbjct: 12 LPARGTLLAFDFGLARIGVAVGELETRHANPLLTVHEEANAARFAIIARLLDEWKPVALV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KK 131
+GLP +++G E R F + + + +P DERL++ +A++ L D +S +
Sbjct: 72 VGLPGHLDGREHELAPRCRRFAN-QLHGRFGIPVHLVDERLSSAAAERQLHDAGLSGWQA 130
Query: 132 RIQKVDSIAAALILQEVLD 150
R +D++AA LILQ LD
Sbjct: 131 RKPVLDAVAAQLILQHFLD 149
>gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189046104|sp|A9MQS7|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase
gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 138
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972]
Length = 138
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKSK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|149918360|ref|ZP_01906851.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
gi|149820886|gb|EDM80295.1| hypothetical protein PPSIR1_36632 [Plesiocystis pacifica SIR-1]
Length = 156
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G+K IGLA+SD G AH R L R+ + +L+ + + A ++GLP
Sbjct: 1 MRVLALDVGSKTIGLAVSDVGGSMAHAREVLRRQGHKLDSAAVLALASELEVRALVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSAQQILIDMNVSRKKR 132
L ++GSEG R R F+ + P WDER +T +A++ L++ +VSR KR
Sbjct: 61 LELDGSEGHRARLVRRFLKVLEAAIAEAERALPVHTWDERYSTAAAERTLLEADVSRAKR 120
Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158
Q +D++AA ILQ LD + S
Sbjct: 121 KQNIDAVAAQFILQGWLDAQARRRES 146
>gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae
Sd197]
gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11]
gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|146325607|sp|Q32C18|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase
gi|226725521|sp|B6I787|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase
gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11]
gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B]
gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3]
Length = 138
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
str. Challis substr. CH1]
gi|189046109|sp|A8AZS9|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 139
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELL-SFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + E L + + F+IG
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ + + +P + DERLTTV+A+++LI+ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGAKVTE-LFGLPVEYQDERLTTVAAERMLIEQADVSRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222475321|ref|YP_002563738.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Florida]
gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Florida]
Length = 164
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL
Sbjct: 8 MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 67
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E I A ++GLPL ++G EG R+FV +I + V DER TT A +
Sbjct: 68 AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKK-SGVYVYLHDERFTTAMASR 126
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK + D I+AALILQ+VLD
Sbjct: 127 TTESLGLRRKASQKVDDKISAALILQQVLD 156
>gi|118597213|sp|Q1WT34|RUVX_LACS1 RecName: Full=Putative Holliday junction resolvase
Length = 147
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + Q + + + F++
Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA+LILQ LD
Sbjct: 120 KKVIDKLAASLILQNYLD 137
>gi|307708049|ref|ZP_07644517.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|322377241|ref|ZP_08051733.1| putative Holliday junction resolvase [Streptococcus sp. M334]
gi|307615834|gb|EFN95039.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|321281954|gb|EFX58962.1| putative Holliday junction resolvase [Streptococcus sp. M334]
Length = 139
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + T + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|317471885|ref|ZP_07931220.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
gi|316900658|gb|EFV22637.1| hypothetical protein HMPREF1011_01569 [Anaerostipes sp. 3_2_56FAA]
Length = 138
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D GTK +G+A+SD A P + RK K+ +T + + + ++
Sbjct: 1 MRILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIVAEYKVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R +T AF + + R+ + + WDERL+TV++ ++L++ V R+ R
Sbjct: 61 GYPKNMNNTIGERGMATEAF-RDSLVRRTGLDVILWDERLSTVASNKVLMESGVRREHRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA++ILQ LD +
Sbjct: 120 KVIDQVAASMILQGYLDSL 138
>gi|327540307|gb|EGF26893.1| Resolvase, holliday junction-type, YqgF-like protein
[Rhodopirellula baltica WH47]
Length = 173
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+AS+D GT RIG+AI DP A P + + A + +E IAA+++
Sbjct: 13 PATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTLEKDAQYFIDLAKSERIAAWVV 72
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP++ +G E + +R F + +P +DER TTV+A + +RKK
Sbjct: 73 GLPIHCDGGESDKSKESRKFAAW-LKETTGLPTRLFDERFTTVAANAKIRQGKTTRKKTK 131
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
Q+VD++AA ++L+ L+ + G
Sbjct: 132 QRVDAVAAQVLLESFLEACRYRGELAG 158
>gi|168054242|ref|XP_001779541.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669022|gb|EDQ55617.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 171
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT--QTALE 58
M ++ ++ L + L + +D+G++ IGLA+SDP R A P + R T +
Sbjct: 1 MELVSLKQLFQRLSSGGRLLGLDVGSRNIGLAVSDPKCRIASPHSVMYRSNTTTLKNISR 60
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTV 116
L S + NI +IG PL + G +G + + F M R + +V+WDERLT+V
Sbjct: 61 LESLVQEMNITGLVIGYPLELTGFQGKQGAQVKLFAKELQMSGRFPNLAYVYWDERLTSV 120
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ ++ M+++ ++R VD ++A ILQ LD +S +E+
Sbjct: 121 AVTNVIGSMDITGRRRKNIVDKMSALCILQGCLDSLSRIENG 162
>gi|270293966|ref|ZP_06200168.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275433|gb|EFA21293.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 141
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ Q L+ ++ E + ++G
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLQFLLD---YVAKEPVERILVGF 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ + +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKKLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Mississippi]
gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Puerto Rico]
gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Virginia]
gi|62900915|sp|Q5PAA6|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase
Length = 157
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE +L ++ I +D G K+ GLA+SD A P +R+ V Q EL
Sbjct: 1 MLCDSIESFFGALGADRRILGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E I A ++GLPL ++G EG R+FV +I + V DER TT A +
Sbjct: 61 AILKREGICAAVVGLPLQLDGMEGEMCAVVRSFVQKLIKK-SGVYVYLHDERFTTAMASR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK + D I+AALILQ+VLD
Sbjct: 120 TTESLGLRRKASQKVDDKISAALILQQVLD 149
>gi|313891828|ref|ZP_07825433.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|329121066|ref|ZP_08249697.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
gi|313119822|gb|EFR43009.1| RNAse H domain protein, YqgF family [Dialister microaerophilus UPII
345-E]
gi|327471228|gb|EGF16682.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Dialister micraerophilus DSM 19965]
Length = 145
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 78/142 (54%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G+ IG+AISD A + + L + I + ++ ++G+P
Sbjct: 1 MRIMALDVGSHTIGVAISDLMGWTAQGLETIRHSTREKDFERLKTIIDSYDVKEIVVGMP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNMNG++G R T FV ++ +P FWDERLTTV AQ+ LI ++SRKKR + +
Sbjct: 61 LNMNGTKGIRAELTEDFVKDLKSAFPNIPCAFWDERLTTVMAQKTLISADMSRKKRKKVI 120
Query: 137 DSIAAALILQEVLDRISFLESS 158
D +AA +IL+ L + F
Sbjct: 121 DKLAATVILEGYLRHLEFKRKG 142
>gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
Length = 138
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + S D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|239978414|ref|ZP_04700938.1| hypothetical protein SalbJ_03203 [Streptomyces albus J1074]
gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 158
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + + ++G
Sbjct: 6 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEPIEVVVG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER++TV+A Q + V KK
Sbjct: 66 LPRSLKGGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVRSKKGRA 125
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ L+
Sbjct: 126 VIDQAAAVVILQSALES 142
>gi|170016827|ref|YP_001727746.1| endonuclease [Leuconostoc citreum KM20]
gi|226731627|sp|B1MXQ0|RUVX_LEUCK RecName: Full=Putative Holliday junction resolvase
gi|169803684|gb|ACA82302.1| Predicted endonuclease [Leuconostoc citreum KM20]
Length = 143
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G++ +G+A+SDP A + + + L I + ++G
Sbjct: 1 MRLLGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLARLGEIIKEKQAKGVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN SEGPR + R + + + + +P F DERLTTV A+++L++ +VSRKKR
Sbjct: 61 LPKNMNNSEGPRAEAARQYAQMV-EDQFNLPTDFQDERLTTVQAERMLVEEADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D IAA ILQ LD
Sbjct: 120 QVIDKIAAEFILQNYLD 136
>gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans
Agy99]
gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M]
gi|167012739|sp|A0PPG7|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase
gi|226731630|sp|B2HNC2|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase
gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 170
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 62/144 (43%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
ID+GT RIG+A SDP A P + R++ + L + + I+GL
Sbjct: 24 RGRRLGIDVGTVRIGVASSDPDGILATPLETVRRERSGKHLRRLATLVGETEAVEVIVGL 83
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + G + R +P DERLTTVSAQ+ L + V K +
Sbjct: 84 PRTLADRIGSSAQDAIDLADELAARVAPIPVRLADERLTTVSAQRSLREAGVRAKNQRAV 143
Query: 136 VDSIAAALILQEVLDRISFLESSK 159
+D AA ILQ LD+ L +
Sbjct: 144 IDQAAAVAILQAWLDQRRTLAGGR 167
>gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
Length = 146
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ + ++D+G +RIG+A+SDP R A P + K + S I ++AA
Sbjct: 2 KIDEPGRVMALDVGEQRIGVALSDPTRTLATPLTTIRAKPRATALKRIASLIREHDVAAL 61
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLPL M+G GP+ + FV + R + +P F DERLTTV+A++++ID+ + ++
Sbjct: 62 VVGLPLTMSGDVGPQAALVQQFVE-ELRRAIAIPLTFVDERLTTVAAERMMIDLKLKPEQ 120
Query: 132 RIQKVDSIAAALILQEVLD 150
R ++D +AA++ILQ+ LD
Sbjct: 121 RKARIDEVAASIILQDFLD 139
>gi|153815342|ref|ZP_01968010.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
gi|317501696|ref|ZP_07959887.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331088419|ref|ZP_08337334.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847404|gb|EDK24322.1| hypothetical protein RUMTOR_01576 [Ruminococcus torques ATCC 27756]
gi|316896947|gb|EFV19027.1| hypothetical protein HMPREF1026_01831 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330408186|gb|EGG87674.1| Holliday junction resolvase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 145
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+AISD R A + RK K+ +T + I ++ ++
Sbjct: 1 MRIMGLDYGSKTVGVAISDALRLTAQAVETIERKEENKLRRTCARIEELIKKYDVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +MN G R + F + R+ + + WDERLTTV A++ LI+ NV R+ R
Sbjct: 61 GFPKHMNNDIGERAQQSMEFGEM-LKRRTGLEVILWDERLTTVEAERTLIESNVRRENRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D IAA ILQ LD
Sbjct: 120 KHIDQIAAVFILQGYLD 136
>gi|260589075|ref|ZP_05854988.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
gi|331082505|ref|ZP_08331630.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540495|gb|EEX21064.1| putative holliday junction resolvase [Blautia hansenii DSM 20583]
gi|330400483|gb|EGG80113.1| Holliday junction resolvase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 144
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K IG+AISDP A + R+ K+ ++ + ++ ++
Sbjct: 1 MRIMGLDYGSKTIGVAISDPLGITAQGIEIIRREEENKLRKSLRRVEELAKEYEVSEIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R + ++R++ +P V WDERLTTV A + L++ V R+ R
Sbjct: 61 GFPKNMNNTIGERAEKSLQL-KEALERRLGLPVVMWDERLTTVEANRTLMETGVRRENRG 119
Query: 134 QKVDSIAAALILQEVLD 150
+ VD IAA ILQ LD
Sbjct: 120 KYVDMIAAVFILQGYLD 136
>gi|301300898|ref|ZP_07207070.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851497|gb|EFK79209.1| RNAse YqgF [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 147
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + Q + + + F++
Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA+LILQ LD
Sbjct: 120 KKVIDKLAASLILQNYLD 137
>gi|227891105|ref|ZP_04008910.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
ATCC 11741]
gi|227866979|gb|EEJ74400.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
ATCC 11741]
Length = 147
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + + Q + + + F++
Sbjct: 1 MGRLMGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPRV + +A+ ++ K +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTSGPRVEAAKAYGE-LLKEKFNLPIDFIDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA+LILQ LD
Sbjct: 120 KKVIDKLAASLILQNYLD 137
>gi|323341645|ref|ZP_08081878.1| crossover junction endodeoxyribonuclease [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464070|gb|EFY09263.1| crossover junction endodeoxyribonuclease [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 144
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75
I +DLG+K G+A+SD +AHP L K E L I E + +G
Sbjct: 3 GKIIGLDLGSKTCGVALSDGLGMYAHPVETLYYKVSIDELKEPLDSLIKKERVKVIALGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN G R + F ++ V DERLT+V A + LID +VSRKKR +
Sbjct: 63 PKMMNNDVGERAQISEEF-KKTLESWFNCEVVLIDERLTSVVANRQLIDQDVSRKKRKKV 121
Query: 136 VDSIAAALILQEVLDRISFLESS 158
VD +AA ILQ LD+ F+E +
Sbjct: 122 VDQLAAVHILQTYLDKRRFMEGN 144
>gi|259046501|ref|ZP_05736902.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
gi|259036666|gb|EEW37921.1| Holliday junction resolvase [Granulicatella adiacens ATCC 49175]
Length = 144
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFI 72
PN + +D+G+K +G+A+SD A + K ++ + + +
Sbjct: 2 PNMRLMGLDVGSKTVGVAVSDLMGWTAQGVETIPINEKASEFGFKRVVELVEEYGVEKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKK 131
IGLP NMN +EGPRV ++R + +++++ +P VF DERLTT+ A+++L++ VSRKK
Sbjct: 62 IGLPKNMNNTEGPRVEASRRYGA-SLEKRLQIPIVFHDERLTTMQAERMLVEEGNVSRKK 120
Query: 132 RIQKVDSIAAALILQEVLD 150
R Q +D +AA +ILQ LD
Sbjct: 121 RKQVIDMLAAVMILQNYLD 139
>gi|312862410|ref|ZP_07722653.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322515847|ref|ZP_08068791.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
gi|311102053|gb|EFQ60253.1| RNAse H domain protein, YqgF family [Streptococcus vestibularis
F0396]
gi|322125733|gb|EFX97055.1| crossover junction endodeoxyribonuclease [Streptococcus
vestibularis ATCC 49124]
Length = 139
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTEGPRVEASKAYGD-KIKEIFEIPVDYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|237722140|ref|ZP_04552621.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260170793|ref|ZP_05757205.1| Holliday junction resolvase-like protein [Bacteroides sp. D2]
gi|299149163|ref|ZP_07042224.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
gi|315919127|ref|ZP_07915367.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|229447950|gb|EEO53741.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298512830|gb|EFI36718.1| putative Holliday junction resolvase [Bacteroides sp. 3_1_23]
gi|313693002|gb|EFS29837.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 138
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ E +I E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGE---YIAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
Length = 175
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFI 72
+D+GT RIG+A+SDP A P + R K T+ L + + + +
Sbjct: 23 PGRGRRLGVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRRLAALVDEYQVVEVV 82
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + G + R VP DER TTV+AQ+ L + V + +
Sbjct: 83 VGLPRTLADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTAQRALREAGVRARGQ 142
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+D AA ILQ LD+
Sbjct: 143 RSVIDQAAAVGILQNWLDQRR 163
>gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
Length = 143
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + ++D+G +R+G+A+SD A P + K+ L++ I + IIG
Sbjct: 7 PGRRLIALDVGARRVGVAVSDELGLIASPVESVDMKRDGM--DRLVALIERYDPERIIIG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL M+G EGP+ +TRAF + +V P +FWDERLTT A Q LI+ R +R Q
Sbjct: 65 LPLGMSGREGPQAAATRAFAQ-QLRGRVDRPIIFWDERLTTFMADQSLIEAGHRRARRKQ 123
Query: 135 KVDSIAAALILQEVLDRIS 153
VD++AAALILQ LD
Sbjct: 124 HVDAVAAALILQSYLDSQR 142
>gi|148657331|ref|YP_001277536.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
gi|226731646|sp|A5UY83|RUVX_ROSS1 RecName: Full=Putative Holliday junction resolvase
gi|148569441|gb|ABQ91586.1| Holliday junction resolvase YqgF [Roseiflexus sp. RS-1]
Length = 141
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ ++D+G +RIG+A+SDP R A P + + +L+ I + A ++
Sbjct: 3 SEPGRVMALDVGERRIGVALSDPTRMLASPLTTIRAVPRSTALKRILTLIRDYQVTALVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL MNG GP+ + FV + + +P F DERLTTV+A++++ID+ + ++R
Sbjct: 63 GLPLTMNGDIGPQATLVQQFVD-ELRPLIDIPIFFVDERLTTVAAERMMIDLKIKPEQRR 121
Query: 134 QKVDSIAAALILQEVLDRIS 153
++D +AA++ILQ+ LD
Sbjct: 122 ARIDEVAASIILQDFLDSQR 141
>gi|302037044|ref|YP_003797366.1| putative holliday junction resolvase [Candidatus Nitrospira
defluvii]
gi|300605108|emb|CBK41441.1| predicted Holliday junction resolvase (modular protein) [Candidatus
Nitrospira defluvii]
Length = 203
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
Q I +ID G+KRIG A+SD A P R+ + + + ++G
Sbjct: 2 KGQRILAIDHGSKRIGFALSDELGWTAQPLETFYRRNPDADIRHIQDLVREHEVGQVLVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+PL ++G GP F+ +++ + VP + WDER+TT +A+ +LI +V R+KR
Sbjct: 62 MPLRLDGEIGPAAKVVAEFIQ-LLEPALSVPVITWDERMTTCAAEDLLIAADVGRRKRKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD IAAA++LQ L +
Sbjct: 121 IVDRIAAAILLQSYLASL 138
>gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS315]
gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
Length = 136
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + +K L + + F+IGLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV ++ + ++ I+ +P + DERLTTV A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTNGPRVDASITYGNH-IEHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ L+R
Sbjct: 120 DKLAAQLILQNYLNR 134
>gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
Length = 140
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +ID G G+AISDP A + +K EL + + ++G P
Sbjct: 1 MRVMAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+G+EGPR R F + P WDER TTV A +IL + + KKR + V
Sbjct: 61 RNMDGTEGPRAQLYRDFAAQVAQATGLEPV-LWDERRTTVDAHRILAEGGKNAKKRKKTV 119
Query: 137 DSIAAALILQEVLDRISFLES 157
D++AA+LIL+ LD
Sbjct: 120 DAVAASLILEGYLDFQRMKNR 140
>gi|306834532|ref|ZP_07467645.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
gi|304423334|gb|EFM26487.1| crossover junction endodeoxyribonuclease [Streptococcus bovis ATCC
700338]
Length = 136
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIVRIDEEAGEFGFERLEELVKQYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN +EGPRV +++A+ I+ +P + DERLTTV A+++L++ +VSR KR + +
Sbjct: 61 NMNNTEGPRVEASKAYGD-KINELFNIPVDYQDERLTTVQAERMLVEQADVSRGKRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA LILQ LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135
>gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
Length = 138
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVDVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
gi|254767505|sp|B8GC73|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase
gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
Length = 142
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I +D+G +RIG+AISD R A P + + ++ + + ++GLP
Sbjct: 4 QTILGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L M G GP+ + + FV + + P +DERLT+V+A+Q+L ++ V K +++
Sbjct: 64 LTMRGEHGPQAAAIQRFVD-ALAAVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQI 122
Query: 137 DSIAAALILQEVLDRISF 154
D +AA++ILQ+ LD
Sbjct: 123 DQVAASIILQDYLDARRN 140
>gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163]
Length = 141
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ +Q + + D GTK IG+AI A P L + + + + +
Sbjct: 1 MMSHQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GSE P R F + + + V DERL+TV A+ L + R
Sbjct: 61 VGLPLNMDGSEQPLTVRARKFAN-RLHGRFGVQVDLHDERLSTVEARAELFERGGFRALS 119
Query: 133 IQKVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 120 KGNVDSLSAVIILESWFEN 138
>gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
Length = 145
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R GLA+ D A P + + + ++ ++G P
Sbjct: 1 MKIMAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+GS G R F + + +P WDER TTVSA Q L ++NV +KR + V
Sbjct: 61 KNMDGSCGERAKKCEEFAK-RLGEMIPLPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVV 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA +IL+ L+
Sbjct: 120 DEVAATIILESYLEYR 135
>gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
Length = 135
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+A+SD A + ++ + I ++ ++GLP
Sbjct: 1 MGLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMNG+ GPR +++ + +++ +P V WDERL+T++A+++L++ +VSRKKR + +D
Sbjct: 61 NMNGTIGPRGEASQFYAS-ELEKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRKKVID 119
Query: 138 SIAAALILQEVLDR 151
+AA +ILQ L+
Sbjct: 120 KMAAVMILQGFLNS 133
>gi|153808040|ref|ZP_01960708.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
gi|149129649|gb|EDM20863.1| hypothetical protein BACCAC_02326 [Bacteroides caccae ATCC 43185]
Length = 138
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ + +I E + I+GL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGD---YIAKEPVERIIVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + + + + +K R
Sbjct: 58 PRQMNNEVSENMKNIEPFVRSLKKRFPDIPVEYVDERFTSVLAHRTMQEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|289168746|ref|YP_003447015.1| holiday junction resolvase [Streptococcus mitis B6]
gi|288908313|emb|CBJ23155.1| holiday junction resolvase [Streptococcus mitis B6]
Length = 139
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + T + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KLEELFSLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. avium ATCC 25291]
gi|62900995|sp|Q741L2|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase
gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 167
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 60/147 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G+ RIG+A SDP A P + R + + L + +T ++
Sbjct: 19 PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + R P DERLTTV+AQ+ L V K++
Sbjct: 79 GLPRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 138
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+D AA ILQ LD+ G
Sbjct: 139 AVIDQAAAVAILQSWLDQRRAATREAG 165
>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 138
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G IG+AISD A P + R+ ++ I N+ ++GL
Sbjct: 1 MNKILGLDVGDVWIGVAISDALMLTAQPLMTIKRESNKIAYEKIHEIIKENNVEKVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ F + K V + DER+TT+ A+Q+LI+ +V R+ R +
Sbjct: 61 PKNMNNTIGPQSEKVIKFAE-KLKNKFKVEIEYVDERMTTLMAEQVLIEGSVRRENRKKY 119
Query: 136 VDSIAAALILQEVLDRIS 153
+D IAA ILQ LDRI+
Sbjct: 120 IDKIAATYILQSYLDRIN 137
>gi|81428003|ref|YP_395002.1| Holliday junction resolvase-like protein [Lactobacillus sakei
subsp. sakei 23K]
gi|146325576|sp|Q38YN7|RUVX_LACSS RecName: Full=Putative Holliday junction resolvase
gi|78609644|emb|CAI54690.1| Hypothetical protein LCA_0389 [Lactobacillus sakei subsp. sakei
23K]
Length = 147
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ D+G++ +G+A+SD A + + + + + F++G
Sbjct: 1 MRLMGFDVGSRTVGIAVSDLFGWTAQGVEIIRINEDESEFGLDRVKELVAQHQVTGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR + + + + +P + DERLTTV A+++L++ + SRKKR
Sbjct: 61 LPKNMNNSIGPRAVKAQEYGAMLTELFPEIPVDYIDERLTTVQAERMLVEQADTSRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA +ILQ LD
Sbjct: 121 QVIDKLAAVMILQNYLD 137
>gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22]
gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei
87.22]
Length = 154
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 62/146 (42%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + I+G
Sbjct: 2 RRGRRLALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EGP R F + VP DER+TTV+A Q L V KK
Sbjct: 62 LPRSLKGGEGPAAVKVRGFAQELARMIAPVPVRLLDERMTTVTAGQGLRASGVKSKKGRS 121
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ+ L+ + G
Sbjct: 122 VIDQAAAVIILQQALESERMSGKAPG 147
>gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
Length = 168
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G K IGLA++D A P L + + +L I ++ I+GLP N
Sbjct: 25 ILSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPRN 84
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS GP R FV + + + +P F DERLTT A ++L + +++ +K+DS
Sbjct: 85 MDGSYGPAAEKVRQFV-LKLKQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKKKIDS 143
Query: 139 IAAALILQEVLDRISFLESSKG 160
AAA+ILQ LD + G
Sbjct: 144 YAAAVILQSYLDVLPLKGKRAG 165
>gi|298384714|ref|ZP_06994274.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
gi|298262993|gb|EFI05857.1| Holliday junction resolvase [Bacteroides sp. 1_1_14]
Length = 138
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ E ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNFIGE---YVAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|322375055|ref|ZP_08049569.1| putative Holliday junction resolvase [Streptococcus sp. C300]
gi|321280555|gb|EFX57594.1| putative Holliday junction resolvase [Streptococcus sp. C300]
Length = 139
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIHINEDQGQFGFDRIKELVDSYKVERFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
Length = 163
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+ R+G+A DP A P L R+ E+ + ++ +IGLP +
Sbjct: 3 LGVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRAL 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EG RA+ + VP DERL+TV+A + + + + ++ + VD
Sbjct: 63 DGHEGSSARQARAYAGQVARAVEPVPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVDQA 122
Query: 140 AAALILQEVLD 150
AA +ILQ LD
Sbjct: 123 AAVVILQSALD 133
>gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
Length = 138
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P L + T + +T A I+GL
Sbjct: 2 SGTLIAFDFGTKSIGVAVGQRITGTARPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + V DERL+TV A+ L + R +
Sbjct: 62 PLNMDGTEQPLTARARKFAN-KLHGRFGVKIELHDERLSTVEARAGLFEHGGYRALNKGR 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus JCSC5402]
gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 139
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K IG+A+SD A L L I T N+ +IGLP
Sbjct: 5 IGLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPK 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NMN + GP ++ F + + + WDERL+TV A++ L++ +VSRKKR Q +D
Sbjct: 65 NMNNTIGPSGEASLHFSEILKSACPELDIIMWDERLSTVGAERSLLEADVSRKKRKQVID 124
Query: 138 SIAAALILQEVLDR 151
+AA ILQ L+
Sbjct: 125 KMAAVFILQGYLNS 138
>gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126]
Length = 139
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV +++A+ I +P + DERLTTV A+++L++ ++SR KR
Sbjct: 61 LPKNMNNTEGPRVEASKAYGD-KIKEIFGIPVDYQDERLTTVQAERMLVEQADISRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ LDR+
Sbjct: 120 KVIDKLAAQLILQNYLDRM 138
>gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|194442861|ref|YP_002042356.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|32130052|sp|Q8ZM50|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase
gi|226731652|sp|B4T5K4|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase
gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323207881|gb|EFZ92827.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 138
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|254881557|ref|ZP_05254267.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254834350|gb|EET14659.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 139
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A+ + Q +L ++ E + I+G
Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R
Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKLPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139
>gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617]
Length = 141
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ +Q + + D GTK IG+AI A P L + + + + +
Sbjct: 1 MMSHQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GSE P R F + + + V DERL+TV A+ L + R
Sbjct: 61 VGLPLNMDGSEQPLTARARKFAN-RLHGRFGVQVDLHDERLSTVEARAELFERGGFRALS 119
Query: 133 IQKVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 120 KGNVDSLSAVIILESWFEN 138
>gi|318057083|ref|ZP_07975806.1| Holliday junction resolvase-like protein [Streptomyces sp.
SA3_actG]
gi|318077855|ref|ZP_07985187.1| Holliday junction resolvase-like protein [Streptomyces sp.
SA3_actF]
Length = 154
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 61/137 (44%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V + + + ++G
Sbjct: 2 RRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EG RAF + VP DER+TTV+A Q L V+ KK
Sbjct: 62 LPRSLRGGEGSAAKKVRAFAGGLALLVAPVPVRLVDERMTTVTAGQGLRASGVNTKKGRS 121
Query: 135 KVDSIAAALILQEVLDR 151
+D AA +ILQ L+
Sbjct: 122 VIDQAAAVIILQTALES 138
>gi|312880062|ref|ZP_07739862.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
gi|310783353|gb|EFQ23751.1| Holliday junction resolvase YqgF [Aminomonas paucivorans DSM 12260]
Length = 144
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++DLGT R+G+A+SDP RRFA P L + + + T + ++G
Sbjct: 2 TEGRVLALDLGTVRVGVALSDPTRRFAQPLDVLPAQ--ENWIQRVRELVVTHQVTLVLVG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +G+ GP V R + + VP F+DER TT AQQ L+ +VSRK R Q
Sbjct: 60 LPTRTDGTAGPEVERVRGWTEELRQGIPQVPIQFYDERFTTRIAQQALLAGDVSRKGRKQ 119
Query: 135 KVDSIAAALILQEVLD 150
+VD +AAA++LQ LD
Sbjct: 120 RVDKVAAAVLLQGFLD 135
>gi|160883801|ref|ZP_02064804.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
gi|156110886|gb|EDO12631.1| hypothetical protein BACOVA_01773 [Bacteroides ovatus ATCC 8483]
Length = 138
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ E +I E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGE---YIAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNELSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|329961282|ref|ZP_08299448.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
gi|328531947|gb|EGF58764.1| RNAse H domain protein, YqgF family [Bacteroides fluxus YIT 12057]
Length = 141
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ L+ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLTFILD---YVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ + +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLQKKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKARQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENRRF 138
>gi|291618771|ref|YP_003521513.1| YqgF [Pantoea ananatis LMG 20103]
gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103]
gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis
AJ13355]
Length = 138
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P + + T L++ + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + + + + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTARARKFAN-RLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLD 150
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFE 136
>gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 138
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + S D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|167747070|ref|ZP_02419197.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
gi|167654030|gb|EDR98159.1| hypothetical protein ANACAC_01782 [Anaerostipes caccae DSM 14662]
Length = 138
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D GTK +G+A+SD A P + RK K+ +T + + ++
Sbjct: 1 MRILGLDYGTKTVGVALSDELGITAQPFETITRKDENKLRKTYARIEEIAAEYKVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NMN + G R +T AF + + R+ + + WDERL+TV++ ++L++ V R+ R
Sbjct: 61 GYPKNMNNTIGERGMATEAF-RDSLVRRTGLDVILWDERLSTVASNKVLMESGVRREHRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA++ILQ LD +
Sbjct: 120 KVIDQVAASMILQGYLDSL 138
>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
05HAS68]
gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
Length = 136
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + +K L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ + +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGD-LLTERYKLPVDYQDERLTTVAAERMLIEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|270291980|ref|ZP_06198195.1| putative Holliday junction resolvase [Streptococcus sp. M143]
gi|270279508|gb|EFA25350.1| putative Holliday junction resolvase [Streptococcus sp. M143]
Length = 139
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|259909608|ref|YP_002649964.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
Length = 140
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+Q + + D GTK IG+AI A P L + + + + ++G
Sbjct: 2 SHQTLMAFDFGTKSIGVAIGQQLTGTARPMNALKAQDGIPDWNRIEALLKEWQPDRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGSEQPLTVRARKFAN-RLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 121 NVDSLSAVIILESWFEN 137
>gi|205374237|ref|ZP_03227036.1| Holliday junction resolvase-like protein [Bacillus coahuilensis
m4-4]
Length = 138
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+GT+ +G+A+SD A + + + + ++ ++G
Sbjct: 1 MRIMGLDVGTRTVGVAVSDAFGWTAQGIETIKIHEELGFLGYERIKELVKEYEVSKIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMN + GPR +++ + + K +P ++DERLTT+ A+++LI+ +VSR KR +
Sbjct: 61 LPKNMNNTMGPRGEASQRYGE-GLREKFGIPVDYYDERLTTMQAERVLIEADVSRGKRKK 119
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA +ILQ LDR
Sbjct: 120 VIDKMAAVMILQGYLDR 136
>gi|150006542|ref|YP_001301286.1| Holliday junction resolvase-like protein [Bacteroides vulgatus ATCC
8482]
gi|294778839|ref|ZP_06744256.1| RNAse YqgF [Bacteroides vulgatus PC510]
gi|319642941|ref|ZP_07997577.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
gi|167012694|sp|A6L7K0|RUVX_BACV8 RecName: Full=Putative Holliday junction resolvase
gi|149934966|gb|ABR41664.1| putative endonuclease [Bacteroides vulgatus ATCC 8482]
gi|294447292|gb|EFG15875.1| RNAse YqgF [Bacteroides vulgatus PC510]
gi|317385489|gb|EFV66432.1| Holliday junction resolvase [Bacteroides sp. 3_1_40A]
Length = 139
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A+ + Q +L ++ E + I+G
Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R
Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKIPDIPVEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139
>gi|237716075|ref|ZP_04546556.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262407687|ref|ZP_06084235.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|298480835|ref|ZP_06999030.1| Holliday junction resolvase [Bacteroides sp. D22]
gi|229443722|gb|EEO49513.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354495|gb|EEZ03587.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|298272858|gb|EFI14424.1| Holliday junction resolvase [Bacteroides sp. D22]
Length = 138
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ E ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVPTHELLNFIGE---YMAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori]
gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori]
Length = 138
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P L + T + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P R F + I + V DERL+TV A+ L + R KVD
Sbjct: 64 NMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTVEARAGLFEQGGYRALNKGKVD 122
Query: 138 SIAAALILQEVLDR 151
S +A +IL+ ++
Sbjct: 123 SASAVIILESYFEQ 136
>gi|116617674|ref|YP_818045.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|122272125|sp|Q03YQ0|RUVX_LEUMM RecName: Full=Putative Holliday junction resolvase
gi|116096521|gb|ABJ61672.1| RNase H-like ribonuclease [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 143
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
I +D+G++ +G+++SDP A + + + L I +N ++G
Sbjct: 1 MRILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDEKEFGIDRLGEIIKEKNATGVVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN SEGPR ++R + +I++ +P F DERLTTV A+++LI+ N+SRKKR
Sbjct: 61 LPKNMNNSEGPRAEASRNYAK-LIEKTFGLPTDFQDERLTTVEAERMLIEEANISRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRISFL 155
+ +D IAA ILQ LD L
Sbjct: 120 KVIDKIAAEFILQNYLDSKGKL 141
>gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
Length = 148
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + + + + + D GTKRIG+A+ + A P + +K + + A
Sbjct: 1 MAAHRFSGTLLAFDFGTKRIGVAVGNTVSATARPLTTIGAEKNDLRFAAIAELLKEWQPA 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++GLP N +G+ +R F + + + +P + DER T+ +A L +
Sbjct: 61 ALVVGLPCNDDGTPHEMTALSRRFAN-RLKGRFNLPTLLIDERYTSAAASSALDKEGIHG 119
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+K+ +D AA ILQ D S
Sbjct: 120 RKQKNLIDQYAAQQILQAYFDEPS 143
>gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
Length = 143
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 71/135 (52%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K IG+A SD A + RK L + T + ++G
Sbjct: 2 RMRILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGR 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG + V AF+ + + + FV+WDERLTT+ A+Q+L+ V R+KR Q
Sbjct: 62 PRHMNGEDSENVKQIEAFITYLKRQMPAMEFVYWDERLTTMMARQVLMAGGVRREKRKQF 121
Query: 136 VDSIAAALILQEVLD 150
VD +AA LILQ LD
Sbjct: 122 VDKMAAILILQNYLD 136
>gi|302671971|ref|YP_003831931.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
gi|302396444|gb|ADL35349.1| holliday junction resolvase YqgF [Butyrivibrio proteoclasticus
B316]
Length = 145
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+AISD A R + RK K+ +T + I + ++
Sbjct: 1 MRIMGLDYGSKTVGVAISDELLLTAQGREIIRRKEENKLRRTLARIEELIVEYGVTKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+ + R F + I+R+ +P V WDERLTTV A +I+ + + + R
Sbjct: 61 GLPLNMDQTPSERSQLCLEF-KDKIERRTGIPVVMWDERLTTVEADEIMDEAGIRGRDRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ VD IAA +ILQ+ LD
Sbjct: 120 EYVDMIAAQIILQDYLDN 137
>gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis
HTCC2594]
gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594]
Length = 167
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ +L + ++DLGTK IG A SD G RFA L R + + +L +++ N
Sbjct: 14 EYGDALPDGGVLLALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRN 73
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+A ++GLP NM+GSEGPR ++RA+ + +P + WDER +T SA+ +I ++
Sbjct: 74 VAGLVLGLPRNMDGSEGPRAQASRAYAR-NLAEAFGLPVLLWDERWSTQSAESAMIGQDM 132
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
SR KR +K+DS AAA+ LQ LD ++
Sbjct: 133 SRAKRAEKIDSHAAAIFLQAALDTLA 158
>gi|134294911|ref|YP_001118646.1| Holliday junction resolvase-like protein [Burkholderia
vietnamiensis G4]
gi|167012706|sp|A4JC08|RUVX_BURVG RecName: Full=Putative Holliday junction resolvase
gi|134138068|gb|ABO53811.1| Holliday junction resolvase YqgF [Burkholderia vietnamiensis G4]
Length = 149
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A + + + A ++G
Sbjct: 7 RDATFLAFDYGEKRIGVALGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L + NV + R
Sbjct: 67 LPMHPDGTPHDMTQQAKRFGN-QLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARTD 125
Query: 135 KVDSIAAALILQEVLDRISFLESS 158
+D+ AA +ILQ+ D +S E
Sbjct: 126 MLDAEAARVILQQYFDELSDHEHH 149
>gi|319902633|ref|YP_004162361.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
gi|319417664|gb|ADV44775.1| Holliday junction resolvase YqgF [Bacteroides helcogenes P 36-108]
Length = 141
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ ++ ++ E + ++GL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDTLQMIANGLTTVPTHQLLAFIID---YVAKEPVERILVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ ++ +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEVSENMRNIEPFVRSLRNKLPDMPIEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLENKRF 138
>gi|261401282|ref|ZP_05987407.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
23970]
gi|269208768|gb|EEZ75223.1| putative Holliday junction resolvase [Neisseria lactamica ATCC
23970]
Length = 151
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGR-RLHGRFGLPVYWVDERLSSVYAESLLSEARVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D AA ILQ +
Sbjct: 124 VLDQAAAQAILQSFFE 139
>gi|224476714|ref|YP_002634320.1| Holliday junction resolvase-like protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254767525|sp|B9DNH1|RUVX_STACT RecName: Full=Putative Holliday junction resolvase
gi|222421321|emb|CAL28135.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 142
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SD A L ++ +L I E+ +IGL
Sbjct: 5 KIIGLDVGSKTVGVAVSDLMGWTAQGLDTLRINEEENELGITKLAEIIKKEDADTVVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + ++ + V WDERL+T++A++ L++ +VSR KR +
Sbjct: 65 PKNMNNSIGFRGEASLKYKEELLKILPDINVVMWDERLSTMAAERSLLEADVSRSKRKKV 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 125 IDKMAAVFILQGYLDSL 141
>gi|291301347|ref|YP_003512625.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
gi|290570567|gb|ADD43532.1| Holliday junction resolvase YqgF [Stackebrandtia nassauensis DSM
44728]
Length = 151
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFIT 64
+ P +D+G R+G+A+SDP A P + R + + +
Sbjct: 1 MNDTPPRGRRLGVDVGKVRVGVALSDPDGILAAPLETVPRDMSGKSVPPADISRIADLVN 60
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
++ +IGLP+ ++G E +RA+ + VP F DERLTT A + L +
Sbjct: 61 EHSVVEIVIGLPVTLSGEESYAAAESRAYAEQVTAAVGDVPVRFVDERLTTAVASRRLSE 120
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
V K+R VD AA ILQ L++
Sbjct: 121 RGVKGKRRKAVVDQAAAVEILQLWLEKQR 149
>gi|224826991|ref|ZP_03700089.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
gi|224600824|gb|EEG07009.1| Holliday junction resolvase YqgF [Lutiella nitroferrum 2002]
Length = 142
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D G +RIG+A+ + AHP + + Q + I A ++G
Sbjct: 2 PDGTTLAFDFGERRIGVAMGETLLGIAHPLTTIDTEITEQRFAAIGKLIEEWRPAQLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E +R F + + + +P DER T++ A+ +L + V +K+
Sbjct: 62 LPVHADGTEHDLTRLSRRFAN-RLKGRFGLPVWLVDERHTSLIAESLLNEAGVRGRKQKP 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ ++
Sbjct: 121 ALDQVAAQAILQTWFEQ 137
>gi|313668473|ref|YP_004048757.1| hypothetical protein NLA_11710 [Neisseria lactamica ST-640]
gi|313005935|emb|CBN87392.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 151
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGR-RLHGRFGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQSFFE 139
>gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium 104]
gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 165
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 60/147 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G+ RIG+A SDP A P + R + + L + +T ++
Sbjct: 17 PGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRLAALVTELGAVEVVV 76
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + R P DERLTTV+AQ+ L V K++
Sbjct: 77 GLPRTLADRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQRSLRAAGVRAKEQR 136
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+D AA ILQ LD+ G
Sbjct: 137 AVIDQAAAVAILQSWLDQRRAAVREAG 163
>gi|260583980|ref|ZP_05851728.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
gi|260158606|gb|EEW93674.1| Holliday junction resolvase [Granulicatella elegans ATCC 700633]
Length = 140
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A +V + ++ + + +IG
Sbjct: 1 MRVMGLDVGSKTVGVAISDPLGWTAQGVETIVINEAASEFGFNRVVELVKEYEVEKIVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
+P NMN + GPR +++ + +++++ +P VF DERLTT+ A+++L++ NVSRKKR
Sbjct: 61 MPKNMNNTAGPRAEASQKYGR-SLEKRLEIPIVFHDERLTTMQAERMLVEEANVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 120 EVIDKLAAVIILQNYLD 136
>gi|330994858|ref|ZP_08318780.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
gi|329758119|gb|EGG74641.1| Putative Holliday junction resolvase [Gluconacetobacter sp. SXCC-1]
Length = 246
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + I L L+ +Q + +D G K IG+A+SD G A P L R K++ A ++
Sbjct: 84 MPLFNISHLRTLLRRDQRLLGLDPGRKTIGVALSDVGLMLASPHTGLKRAKLSVNAAQIS 143
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +++ ++GLPL+++GS GP + R + + +P WDERL++ + +
Sbjct: 144 TIARAQDVGGLVVGLPLSLDGSFGPAAQAARDW-TLNLSELTGLPAAMWDERLSSSAVNR 202
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
LI + +++R++R VD +AAA ILQ LD
Sbjct: 203 FLIAEADMTRQRRGAVVDQMAAAYILQAALD 233
>gi|296314469|ref|ZP_06864410.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
43768]
gi|296838766|gb|EFH22704.1| putative Holliday junction resolvase [Neisseria polysaccharea ATCC
43768]
Length = 151
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGR-RLHGRFGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQSFFE 139
>gi|212691279|ref|ZP_03299407.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
gi|237712292|ref|ZP_04542773.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237726431|ref|ZP_04556912.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752000|ref|ZP_06087793.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212666511|gb|EEB27083.1| hypothetical protein BACDOR_00770 [Bacteroides dorei DSM 17855]
gi|229434957|gb|EEO45034.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229453613|gb|EEO59334.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236792|gb|EEZ22262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 139
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A+ + Q +L ++ E + I+G
Sbjct: 1 MSRILAIDYGKKRTGVAVTDVLQIIANGLTTVPTH---QLLDFILKYVEKEPVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN E + + FV+ + + +P F DER T+V A Q ++D + +K R
Sbjct: 58 PKQMNNQESENMRNIVPFVNQLRKKLPDIPIEFVDERFTSVLAHQAMLDGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ ++
Sbjct: 118 ALVDEISATIILQSYLESKKYI 139
>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
Length = 222
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 64/135 (47%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID+GT R+G+AISDP A P + R + + + + + I+G P ++
Sbjct: 86 LGIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHL 145
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ G RA+ + R VP DERL+TV+A L + +++ +D
Sbjct: 146 SGASGASAKEARAYSRALAGRIGSVPVHLVDERLSTVTAASSLRANGLDSRRQRPVIDQA 205
Query: 140 AAALILQEVLDRISF 154
AA +ILQ LD
Sbjct: 206 AAVVILQAYLDAQRE 220
>gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
Length = 139
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D GTK IG+A+ A P L ++ + I+G
Sbjct: 2 SGRTLLAFDFGTKSIGVAVGQEITGTARPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + I + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGTEQLVTSQARNFAN-RIHGRFGVKVELHDERLSTVEAKAGLFEQGGYRALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
KVDS +A +IL+ ++
Sbjct: 121 KVDSASAVVILESWFEQ 137
>gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 144
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SD + + + + + + F++G
Sbjct: 1 MRLMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRI 133
LP NMN S GPR ++ + +++K +P F DERLTTV AQ++L + ++SR+KR
Sbjct: 61 LPKNMNNSLGPRAEASEQYGD-RLEKKFKLPVDFEDERLTTVEAQRMLTEEADISRRKRK 119
Query: 134 QKVDSIAAALILQEVLDRISFL 155
+ +D +AA LILQ LDR L
Sbjct: 120 KVIDKLAAGLILQNYLDRKGKL 141
>gi|77408149|ref|ZP_00784895.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
gi|77173249|gb|EAO76372.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
COH1]
Length = 136
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++ + I +P + DERLTTV A+++L++ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQVYGD-KITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA LILQ LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135
>gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 141
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+D+G K IG++ISD A + R + E+ + NI ++G+
Sbjct: 1 MNRFLGLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGV 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+NM+GS+ R F + K V +F DER T++ A++ LI NV R+ R +
Sbjct: 61 PINMDGSDTVMSKRIRKFAR-KLTPKFGVEVIFQDERFTSIEAERTLIQSNVRRENRKKY 119
Query: 136 VDSIAAALILQEVLDRISF 154
+D +AA++ILQ +DR++
Sbjct: 120 IDQLAASIILQTYIDRMNN 138
>gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
gi|156869398|gb|EDO62770.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
Length = 139
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I IDLG R G+A+ D A P + + +++ +GLP N
Sbjct: 3 ILGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIALGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEG + R F ++ K +P F DER TTV+A L +V KKR VDS
Sbjct: 63 MDGSEGESAQNAREFGA-LLQEKTGLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAVVDS 121
Query: 139 IAAALILQEVLDRISF 154
+AA +ILQ LD
Sbjct: 122 VAAVIILQNYLDYRRN 137
>gi|87198928|ref|YP_496185.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
DSM 12444]
gi|146325585|sp|Q2G9X2|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase
gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
DSM 12444]
Length = 155
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +L + +D GTK IG+A+ D RFA + R K ++
Sbjct: 1 MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLPLNM+GSE PR RA N+ + +P + WDER TT +A++
Sbjct: 61 AIVAERGVKGIVIGLPLNMDGSESPRSQGARAMARNL--EDLGLPILLWDERWTTQAAER 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+I+ + SR KR +++DS AAALILQ +D ++
Sbjct: 119 AMIEQDFSRAKRAERIDSHAAALILQGAIDALA 151
>gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
Length = 178
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G K IG+A+SDP A R + N+ + GLP
Sbjct: 41 RLLGLDVGDKYIGIAVSDPLGITAQGYRTWKRGTRDDDLAFFTDVVEQFNVTTLVSGLPK 100
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+M G+E + TR F + +++ + V+ DERLT+ +++++LI+ V R+KR + +D
Sbjct: 101 DMEGNETAQARKTRNFCQF-LKKRLNLEVVYIDERLTSKASERVLIEGGVRREKRKEYID 159
Query: 138 SIAAALILQEVLDR 151
++AA +ILQ LD
Sbjct: 160 TLAAQMILQVYLDS 173
>gi|293364362|ref|ZP_06611088.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
gi|291317208|gb|EFE57635.1| crossover junction endodeoxyribonuclease [Streptococcus oralis ATCC
35037]
Length = 139
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + F++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGA-KLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAQLILQNYLDR 137
>gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1]
gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1]
Length = 139
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P + + + + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQELTGSARPLTAIKAQDGIPDWQVIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + + + + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTDRARKFAN-RLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLDR 151
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFEN 137
>gi|296110666|ref|YP_003621047.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
11154]
gi|295832197|gb|ADG40078.1| Holliday junction resolvase-like protein [Leuconostoc kimchii IMSNU
11154]
Length = 143
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
I +D+G++ +G+A+SDP A + + + L I + ++G
Sbjct: 1 MRILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEKEFGLERLGEIIKDKQAKGVVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN SEGPR ++R + + D+ +P F DERLTTV A+++LI+ N+SRKKR
Sbjct: 61 LPKNMNNSEGPRAEASRLYAKMVQDKF-NLPIDFQDERLTTVQAERMLIEEANISRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D IAA ILQ LD
Sbjct: 120 QVIDKIAAEFILQNYLD 136
>gi|148360766|ref|YP_001251973.1| putative ribonuclease [Legionella pneumophila str. Corby]
gi|148282539|gb|ABQ56627.1| putative ribonuclease with RNase H fold; smart00732 [Legionella
pneumophila str. Corby]
Length = 142
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + ++ +P DERL+TV A+ L + R+ +
Sbjct: 65 LPTCIDDRELYTTSAARCFAK-QLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140
>gi|83945529|ref|ZP_00957876.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
HTCC2633]
gi|83851105|gb|EAP88963.1| hypothetical protein OA2633_01404 [Oceanicaulis alexandrii
HTCC2633]
Length = 162
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+L P P+ +ID GTK +G+A+S+ R P + R+K TQ A LL+
Sbjct: 7 ALLPQGPLMAIDPGTKTLGVAVSNTDRTLVTPLTTIQREKFTQDAQALLNLYDERACVGL 66
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
I+GLPL+M+G +G R S+R+FV N++ R +P + DERL+T +A + LI+ V
Sbjct: 67 IVGLPLHMHGGDGRRAQSSRSFVTNLL-RLRDLPVAYQDERLSTFAATESLIEAGVKPSH 125
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R VD+ AAA+IL+ + RI+
Sbjct: 126 RKDFVDAQAAAVILESAIGRIN 147
>gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont]
Length = 138
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+AI A P L + T + + ++GLPL
Sbjct: 5 TLLGFDFGTKSIGVAIGQQLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE P R F + + + V DERL+TV A+ L + R + +D
Sbjct: 65 NMDGSEQPLTARARKFAN-RLHGRFGVRVELQDERLSTVEARADLFERGGYRALQKGHID 123
Query: 138 SIAAALILQEVLD 150
S +A +ILQ+ +
Sbjct: 124 SQSAVIILQDWFE 136
>gi|322392530|ref|ZP_08065990.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
gi|321144522|gb|EFX39923.1| crossover junction endodeoxyribonuclease [Streptococcus peroris
ATCC 700780]
Length = 136
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + L + + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRLKELVESYKVEHFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ +VSR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEELFGLPVEYQDERLTTVAAERMLIEQADVSRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|292487084|ref|YP_003529954.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC
BAA-2158]
Length = 141
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ NQ + D GTK IG+AI A P L + L + + +
Sbjct: 1 MMRNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GSE P R F + + + V DERL+TV A+ L + R
Sbjct: 61 VGLPLNMDGSEQPLTVRARKFAN-RLHGRFGVQVDLHDERLSTVEARAELFERGGFRALS 119
Query: 133 IQKVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 120 KGNVDSLSAVIILESWFEN 138
>gi|29345829|ref|NP_809332.1| Holliday junction resolvase-like protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|253567815|ref|ZP_04845226.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|32130022|sp|Q8AAP5|RUVX_BACTN RecName: Full=Putative Holliday junction resolvase
gi|29337722|gb|AAO75526.1| putative endonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|251841888|gb|EES69968.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 138
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTLQLIANGLTTVPTHELLNFI---GGYVAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEASENMKNIEPFVRSLKKRFPELPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
Length = 137
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++D + A+ + + + ++I E + IIGL
Sbjct: 1 MSRILAIDYGQKRTGLAVTDTLQLIANGLDTIPTHTLYEFL---CAYIEKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + FV + VP ++DER T+V A + +ID + +K R
Sbjct: 58 PRQTNGLPSENMKRIEPFVARWKKHQPNVPIEYYDERFTSVLAHRAMIDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLD 150
VD I+A +ILQ+ L+
Sbjct: 118 ALVDKISATIILQDYLE 134
>gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
Length = 140
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++D + A+ + ++T+ + +++ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKFLAD---YVSREPVERFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + AFV ++ +P ++DER T+V A + ++D + +KKR
Sbjct: 58 PKQMNNELSENMKYVEAFVAHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQSYLENKKY 138
>gi|54296606|ref|YP_122975.1| Holliday junction resolvase-like protein [Legionella pneumophila
str. Paris]
gi|62900944|sp|Q5X7G8|RUVX_LEGPA RecName: Full=Putative Holliday junction resolvase
gi|53750391|emb|CAH11785.1| hypothetical protein lpp0637 [Legionella pneumophila str. Paris]
Length = 139
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + ++ +P DERL+TV A+ L + R+ +
Sbjct: 62 LPTCIDDRELYTTSAARHFAK-QLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137
>gi|22538225|ref|NP_689076.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
2603V/R]
gi|76788469|ref|YP_330619.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
A909]
gi|76799707|ref|ZP_00781806.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77406617|ref|ZP_00783663.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|77410840|ref|ZP_00787197.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77412943|ref|ZP_00789146.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|22535137|gb|AAN00949.1|AE014286_12 conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
2603V/R]
gi|76563526|gb|ABA46110.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
A909]
gi|76584940|gb|EAO61599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
18RS21]
gi|77160955|gb|EAO72063.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
515]
gi|77163058|gb|EAO74012.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
CJB111]
gi|77174776|gb|EAO77599.1| conserved hypothetical protein TIGR00250 [Streptococcus agalactiae
H36B]
gi|319745985|gb|EFV98267.1| crossover junction endodeoxyribonuclease [Streptococcus agalactiae
ATCC 13813]
Length = 136
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + L + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ I +P + DERLTTV A+++L++ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGD-KITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLDRI 152
D +AA LILQ LDR+
Sbjct: 120 DKLAAQLILQNYLDRM 135
>gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
gi|259495701|sp|C6C125|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase
gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
Length = 135
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ SID GTKR+GLAISDP + FA P + R ELL I E + +IGLP
Sbjct: 1 MKVLSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+++G + R F ++R+V +P DERL++++A+ L + + +KR + +
Sbjct: 61 LSLDGEDTLTTRQVRNFAA-SLERRVDLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNL 119
Query: 137 DSIAAALILQEVL 149
DS AA +IL+ L
Sbjct: 120 DSQAAKIILETWL 132
>gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
gi|198271815|gb|EDY96085.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
Length = 138
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A+ + ++ L ++ E + ++G
Sbjct: 1 MSRILAIDYGRKRTGIAVTDPMQIIANGLTTVPTHELMDFLL---KYVAQEKVERIVVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + + FV + + +P DER T+V A Q ++D + +K R
Sbjct: 58 PKQMNNEDSENMKYIKPFVAQLKKKLPDMPVELVDERFTSVLAHQAMLDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESRRM 138
>gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae TN]
gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae
Br4923]
gi|32130062|sp|Q9CCS9|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase
gi|254767521|sp|B8ZUJ7|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase
gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 184
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 8 DLVKSLKP-NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
DL K+L P ID+G+ RIG+A SDP A P + R + + L +
Sbjct: 16 DLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVEL 75
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+ ++GLP + G + R VP DERLTTVSAQ++L
Sbjct: 76 QVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAG 135
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
V K + +D AA +ILQ LD+
Sbjct: 136 VRAKDQRAVIDQAAAVVILQNWLDQ 160
>gi|331091336|ref|ZP_08340176.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330404497|gb|EGG84041.1| Holliday junction resolvase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 142
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+AISD A + RK K+ +T + + I + ++
Sbjct: 1 MRIMGLDYGSKTVGVAISDALCLTAQGIETIQRKEENKLRKTLARIETLIKEYEVDKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +MN G R + AF +M++R+ + + WDERLTTV A++ LI+ NV R++R
Sbjct: 61 GFPKHMNNDIGDRAEKSLAF-KDMLERRTGLEVIMWDERLTTVEAERTLIESNVRREERK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ VD IAA ILQ LD +
Sbjct: 120 KYVDKIAAIFILQGYLDSV 138
>gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
Length = 139
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+A+ A P L + L + + ++GLP
Sbjct: 4 QTLLGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + + + + DERL+TV A+ L + R V
Sbjct: 64 LNMDGTEQPLTDRARKFAN-RLHGRFGIRVELQDERLSTVEARAGLFERGGYRALNKGSV 122
Query: 137 DSIAAALILQEVLDR 151
DS +AA+ILQ+ +
Sbjct: 123 DSQSAAIILQDWFEN 137
>gi|261377526|ref|ZP_05982099.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
gi|269146263|gb|EEZ72681.1| putative Holliday junction resolvase [Neisseria cinerea ATCC 14685]
Length = 151
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PQGTALAFDFGEARIGVAQGDTELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGR-RLHGRFGLPVYWVDERLSSVYAEGLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQSFFE 139
>gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 143
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G++ +G++ISDP A + L I +N ++G
Sbjct: 1 MRILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN SEGPR ++R + +I+ +P F DERLTTV A+++LI+ N+SRKKR
Sbjct: 61 LPKNMNNSEGPRAEASRNYAK-LIEETFGLPTDFQDERLTTVEAERMLIEEANISRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRISFL 155
+ +D IAA ILQ LD L
Sbjct: 120 KVIDKIAAEFILQNYLDSKGKL 141
>gi|54293569|ref|YP_125984.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
gi|62900943|sp|Q5WYW4|RUVX_LEGPL RecName: Full=Putative Holliday junction resolvase
gi|53753401|emb|CAH14854.1| hypothetical protein lpl0621 [Legionella pneumophila str. Lens]
Length = 139
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + ++ +P DERL+TV A+ L + R+ +
Sbjct: 62 LPTCIDDRELYTTSAARRFAK-QLHKQFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137
>gi|227499548|ref|ZP_03929655.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
gi|227218307|gb|EEI83561.1| crossover junction endodeoxyribonuclease [Anaerococcus tetradius
ATCC 35098]
Length = 139
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP A+ + RK + L I ++ ++GL
Sbjct: 1 MSRIMGLDVGNKTIGVALSDPMFLLANGLETIKRKNASSDIERLREIINDNDVELIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV +I ++V + V+ DER+TT+ ++ +LIDM+V R+ R +
Sbjct: 61 PKNMNNTIGPQAMRVMSFVD-LIKKQVDIEIVYQDERMTTIQSEAVLIDMDVRRENRKKY 119
Query: 136 VDSIAAALILQEVLDRI 152
+D IAA ILQ LDR
Sbjct: 120 IDKIAATFILQTYLDRR 136
>gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
Length = 139
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ + D GTK IG+AI A P K ++ I ++G
Sbjct: 2 SNRTVMGFDFGTKSIGVAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E + F + + + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGTEQLVTTQAKKFAN-RLHGRFGVQIALHDERLSTVEARAHLFEQGGYRSLDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD+ +A +IL+ +R
Sbjct: 121 SVDATSAVIILESWFER 137
>gi|195978958|ref|YP_002124202.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 136
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + K L + + F+IGLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ I+ ++P + DERLTTV A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASKAYGD-RIEELFHIPVSYQDERLTTVEAERMLIEQADISRGKRKKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA LILQ LD
Sbjct: 120 DKLAAQLILQNYLD 133
>gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 144
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G KR G+A++DP + A+ + V + ++ E++ ++GL
Sbjct: 1 MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDFIVS---YVRQEHVERIVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + + +FV + +R +P F+DER T+V A Q ++ + +K R
Sbjct: 58 PKQANGEDSENMGRINSFVRCLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
VD I+A +ILQ ++ L+ +
Sbjct: 118 ALVDEISATIILQGWMESRMMLKKN 142
>gi|37520701|ref|NP_924078.1| Holliday junction resolvase-like protein [Gloeobacter violaceus PCC
7421]
gi|62901004|sp|Q7NLJ1|RUVX_GLOVI RecName: Full=Putative Holliday junction resolvase
gi|35211696|dbj|BAC89073.1| gll1132 [Gloeobacter violaceus PCC 7421]
Length = 156
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D+G+KRIG+A DP A +VR + + +I A +IGLP N
Sbjct: 6 VLGLDVGSKRIGVAGCDPTGLIASGLETIVRCNLGADLDAIRHWIERRRAQAVVIGLPRN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNGS GP+ H + F + R + VP + DERL+TV A + L +VS +R +D
Sbjct: 66 MNGSLGPQAHRIQHFGQ-QLARVIDVPIDYVDERLSTVQAGRAL--QSVSATRRKALIDQ 122
Query: 139 IAAALILQEVLD 150
AAA+ILQ+ LD
Sbjct: 123 QAAAIILQQWLD 134
>gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
Length = 139
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + K L + + F++G
Sbjct: 1 MRLMGLDIGSKTVGVAISDPLGFTAQGLEIIPINEAKEDFGFQRLGELVKQYKVEKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPRV +++A+ I +P + DERLTTV A+++L++ +VSR KR
Sbjct: 61 LPKNMNNTSGPRVEASQAYGE-KIAELFDIPVDYQDERLTTVQAERMLVEQADVSRGKRK 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA LILQ L+R+
Sbjct: 120 KVIDKLAAQLILQNYLERM 138
>gi|160915322|ref|ZP_02077535.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
gi|158433121|gb|EDP11410.1| hypothetical protein EUBDOL_01331 [Eubacterium dolichum DSM 3991]
Length = 137
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74
+ +DLG++ +G+++SD A P + ++ ++I I ++G
Sbjct: 1 MRVLGLDLGSRTLGVSVSDALGMIAQPVTTIRFEEEDYDSAFGQVQTYIKEYQIKTVVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MNG G R + F + + V V WDERLTTV+AQ+ILI +VSRKKR +
Sbjct: 61 LPKHMNGDVGIRGDISIMFKERL--ETLGVTVVLWDERLTTVAAQRILIAADVSRKKRKK 118
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD S
Sbjct: 119 VIDQMAAVQILQGYLDSQS 137
>gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946]
gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946]
Length = 140
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
NQ + D GTK IG+AI A P L + L + + ++G
Sbjct: 2 RNQTCLAFDFGTKSIGVAIGQQLTGTARPLIALKAQDGIPDWNRLEALLKEWQPDRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGSEQPLTVRARKFAN-RLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 121 NVDSLSAVIILESWFEN 137
>gi|111658812|ref|ZP_01409443.1| hypothetical protein SpneT_02000110 [Streptococcus pneumoniae
TIGR4]
gi|149017883|ref|ZP_01834342.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183603171|ref|ZP_02710544.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183603568|ref|ZP_02718032.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|221231101|ref|YP_002510253.1| Holliday junction resolvase [Streptococcus pneumoniae ATCC 700669]
gi|298230981|ref|ZP_06964662.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298502010|ref|YP_003723950.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|303265496|ref|ZP_07351396.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|303267946|ref|ZP_07353748.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|307126416|ref|YP_003878447.1| hypothetical protein SP670_0270 [Streptococcus pneumoniae 670-6B]
gi|147931447|gb|EDK82425.1| hypothetical protein CGSSp23BS72_11110 [Streptococcus pneumoniae
SP23-BS72]
gi|183570834|gb|EDT91362.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183576182|gb|EDT96710.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|220673561|emb|CAR68047.1| putative Holliday junction resolvase [Streptococcus pneumoniae ATCC
700669]
gi|298237605|gb|ADI68736.1| crossover junction endodeoxyribonuclease [Streptococcus pneumoniae
TCH8431/19A]
gi|301799346|emb|CBW31881.1| putative Holliday junction resolvase [Streptococcus pneumoniae
OXC141]
gi|301801141|emb|CBW33814.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV200]
gi|302642642|gb|EFL72987.1| hypothetical protein CGSSpBS458_10928 [Streptococcus pneumoniae
BS458]
gi|302644936|gb|EFL75183.1| hypothetical protein CGSSpBS457_01582 [Streptococcus pneumoniae
BS457]
gi|306483478|gb|ADM90347.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327390615|gb|EGE88955.1| hypothetical protein SPAR5_0192 [Streptococcus pneumoniae GA04375]
gi|332075862|gb|EGI86329.1| uncharacterized family protein [Streptococcus pneumoniae GA17570]
gi|332076642|gb|EGI87104.1| hypothetical protein SPAR148_0175 [Streptococcus pneumoniae
GA17545]
gi|332077498|gb|EGI87959.1| hypothetical protein SPAR68_0240 [Streptococcus pneumoniae GA41301]
gi|332202111|gb|EGJ16180.1| hypothetical protein SPAR69_0222 [Streptococcus pneumoniae GA41317]
gi|332203361|gb|EGJ17428.1| hypothetical protein SPAR93_0231 [Streptococcus pneumoniae GA47368]
gi|332204204|gb|EGJ18269.1| hypothetical protein SPAR120_0169 [Streptococcus pneumoniae
GA47901]
Length = 136
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEEFFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 140
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G K IG+A+SD A P + R+ Q ++ + I NIA ++GL
Sbjct: 5 MEKILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ F + K V ++ DER+TT+SA +ILI+ V R+ R Q
Sbjct: 65 PKNMNNTLGPQSEKVLKFSE-KLKNKYGVEIIYIDERMTTISANRILIEGEVRRENRKQY 123
Query: 136 VDSIAAALILQEVLDR 151
VD IAA ILQ LD
Sbjct: 124 VDKIAATYILQTYLDS 139
>gi|323341498|ref|ZP_08081739.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
ATCC 25644]
gi|323091109|gb|EFZ33740.1| crossover junction endodeoxyribonuclease [Lactobacillus ruminis
ATCC 25644]
Length = 148
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
+ +D+G++ +G+A+SD A + ++ + + ++ F++
Sbjct: 1 MARLMGLDVGSRTVGIAVSDELGWTAQGVEIIKINEEEAIFGIERVKELVEKYDVCGFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKR 132
GLP NMN + GPR +++A+ +I+ +P F DERLTTV A+++L++ + SRKKR
Sbjct: 61 GLPKNMNNTLGPRAEASKAYGELLIE-TFGLPIDFQDERLTTVEAERMLVEQADASRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA+LILQ LD
Sbjct: 120 KKVIDKLAASLILQNYLD 137
>gi|62900951|sp|Q5ZXZ3|RUVX_LEGPH RecName: Full=Putative Holliday junction resolvase
Length = 139
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 2 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + ++ +P DERL+TV A+ L + R+ +
Sbjct: 62 LPTCIDDRELYTTSAARRFAK-QLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 121 EVDSIAACVILEQWLQQ 137
>gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
43184]
gi|154089167|gb|EDN88211.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
43184]
Length = 140
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++D + A+ + ++T+ + +++ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRFLAD---YVSREPVERFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + AFV ++ +P ++DER T+V A + ++D + +KKR
Sbjct: 58 PKQMNNELSENMRYVEAFVTHLKRTIPDIPVEYYDERFTSVLAHKAMLDGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQSYLENKKY 138
>gi|91205622|ref|YP_537977.1| Holliday junction resolvase-like protein [Rickettsia bellii
RML369-C]
gi|157827335|ref|YP_001496399.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
85-389]
gi|146325604|sp|Q1RIC6|RUVX_RICBR RecName: Full=Putative Holliday junction resolvase
gi|167012755|sp|A8GU80|RUVX_RICB8 RecName: Full=Putative Holliday junction resolvase
gi|91069166|gb|ABE04888.1| Putative endonuclease [Rickettsia bellii RML369-C]
gi|157802639|gb|ABV79362.1| Holliday junction resolvase-like protein [Rickettsia bellii OSU
85-389]
Length = 154
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ SID G+K+IG+AIS+ R A P + LL
Sbjct: 1 MIINNLQEFYRLLLPNAPLISIDYGSKKIGIAISNQERNIAMPLNIITEASKKAIIASLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I +IGLP++M+G + + F + + + +P DERLTT +A
Sbjct: 61 EKIEQYKACGIVIGLPIDMSGMQTEQSAIVIKFAE-ELTKSINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L + RK+R D++AA++IL+ VL+ I+ L
Sbjct: 120 FLKSFGIKRKERNNNDDAVAASMILETVLNSINKL 154
>gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194450224|ref|YP_002047085.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734127|ref|YP_002116045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197247485|ref|YP_002148011.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197363964|ref|YP_002143601.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|32130050|sp|Q8Z3V1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase
gi|62900917|sp|Q5PJJ7|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase
gi|81309593|sp|Q57K19|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase
gi|189046105|sp|A9N4P3|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase
gi|226731647|sp|B5F5M2|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase
gi|226731651|sp|B4THI2|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase
gi|226731653|sp|B5BFQ4|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase
gi|226731654|sp|B4TV66|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase
gi|254767524|sp|C0PY74|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase
gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 138
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P + + T + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P R F + I + V DERL+TV A+ L + R KVD
Sbjct: 64 NMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122
Query: 138 SIAAALILQEVLDR 151
S +A +IL+ ++
Sbjct: 123 SASAVIILESYFEQ 136
>gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|226731648|sp|B5FUW0|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase
gi|226731649|sp|B5QY73|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase
gi|226731650|sp|B5RE57|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase
gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 138
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P + + T + + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P R F + I + V DERL+TV A+ L + R KVD
Sbjct: 64 NMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122
Query: 138 SIAAALILQEVLDR 151
S +A +IL+ ++
Sbjct: 123 SASAVIILESYFEQ 136
>gi|218282249|ref|ZP_03488548.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
gi|218216787|gb|EEC90325.1| hypothetical protein EUBIFOR_01130 [Eubacterium biforme DSM 3989]
Length = 141
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRF--AHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
I +DLG+K G++I D A E+L + + ++
Sbjct: 1 MDRIIGLDLGSKTCGVSICDALHITCRALTTVRFESDDYDACLEEVLKLLQENKVKEVVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + + WDERLTTV+A++IL+ +VSRKKR
Sbjct: 61 GLPKHMNGDIGIRGEISCEFAKKL--ESSGIKVHLWDERLTTVAAEKILLQGDVSRKKRK 118
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LDR +
Sbjct: 119 KVIDQMAAVQILQSFLDRQN 138
>gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 158
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 60/136 (44%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + V L + ++G
Sbjct: 6 RRGRRLAIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEPLEVVVG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +++G EGP RAF + V DER+TTV+A Q L + KK
Sbjct: 66 LPRSLSGREGPAAVKVRAFAGELAKGIKPVTVRLVDERMTTVTAAQGLRASGKNAKKGRS 125
Query: 135 KVDSIAAALILQEVLD 150
+D AA +ILQ L+
Sbjct: 126 VIDQAAAVVILQNALE 141
>gi|307609381|emb|CBW98869.1| hypothetical protein LPW_06571 [Legionella pneumophila 130b]
Length = 142
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNSIQKVITQWNPQALIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + ++ +P DERL+TV A+ L + R+ +
Sbjct: 65 LPTCIDDRELYTTSAARRFAK-QLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140
>gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 142
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ ++DLG RIG+A+SDP R FA P L ++ L++ + ++ ++
Sbjct: 3 SSMGRVMALDLGEVRIGVALSDPSRSFASPLEVLKMEEGWP--LKVKELVERNSVTLIVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ +GS GP V ++ + V V DER TT AQ+ L++ +V R+KR
Sbjct: 61 GLPIRTDGSSGPEVQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRK 120
Query: 134 QKVDSIAAALILQEVLDRIS 153
KVD +AAAL+LQ+ L+
Sbjct: 121 GKVDKVAAALMLQDYLNSRR 140
>gi|307728796|ref|YP_003906020.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
gi|307583331|gb|ADN56729.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1003]
Length = 146
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + + A P + + E+ I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R F + ++ + +P + DER ++V A+ L K R
Sbjct: 67 LPMHPDGTPHEMTQLARRFGN-QLNGRFNLPVTWVDERYSSVEAEAGLRA----TKGRAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
++D+ AA++ILQ+ LD +S
Sbjct: 122 RLDAEAASIILQQYLDGLS 140
>gi|326693839|ref|ZP_08230844.1| putative Holliday junction resolvase [Leuconostoc argentinum KCTC
3773]
Length = 143
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G++ +G+A+SDP A + + L I + + ++G
Sbjct: 1 MRILGLDVGSRTVGVAVSDPMGWTAQGVEIIRINEDEAEFGLERLGEIIKAKQVKGVVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN SEGPR + R + + + +P F DERLTTV A+++LI+ ++SRKKR
Sbjct: 61 LPKNMNNSEGPRAEAARRYAKMV-EETFGLPTDFQDERLTTVQAERMLIEEADISRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D IAA ILQ LD
Sbjct: 120 QVIDKIAAEFILQNYLD 136
>gi|269958631|ref|YP_003328418.1| putative Holliday junction resolvase [Anaplasma centrale str.
Israel]
gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str.
Israel]
Length = 157
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M IE + L N+ I +D G +++GLAISD A P +R+ + Q EL
Sbjct: 1 MLCESIEGFFEKLGANKKILGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E I A ++GLPL ++G EG RAFV +I + + DER TT A +
Sbjct: 61 AILKREGIIAAVVGLPLQLDGLEGEMCAVVRAFVRKLIKK-SGIYVYLHDERYTTAMASR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + RK+ + D I+A LILQ+VLD
Sbjct: 120 ATESLGLRRKESQKVDDKISAVLILQQVLD 149
>gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
Length = 158
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 61/136 (44%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ID+G RIG+A DP A P + + + L + ++G
Sbjct: 6 RRGRRLAIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEPLEVVVG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +++G EGP RAF + + V DER+TTV+A Q L + KK
Sbjct: 66 LPRSLSGREGPAAAKVRAFANELAKGIKPVTVRLVDERMTTVTAAQGLRASGRNAKKGRS 125
Query: 135 KVDSIAAALILQEVLD 150
+D AA +ILQ L+
Sbjct: 126 VIDQAAAVVILQNALE 141
>gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
Length = 139
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A+ + + + + E++ IIGL
Sbjct: 1 MGRILAIDYGRKRTGIAVTDPMQIIANGLTTVRTHDLMDFLTD---YTQKESVEKIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ + + FV N + +P + DER T+V AQ+ +I+ + +K R
Sbjct: 58 PKQMDNTPSESMKYIEPFVRNFQKKFPDMPLEYVDERFTSVIAQRTIIEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD ++A +ILQ L+
Sbjct: 118 ALVDEVSATIILQTYLENKR 137
>gi|289550617|ref|YP_003471521.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
HKU09-01]
gi|315658112|ref|ZP_07910984.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
gi|289180149|gb|ADC87394.1| Putative Holliday junction resolvase [Staphylococcus lugdunensis
HKU09-01]
gi|315496441|gb|EFU84764.1| crossover junction endodeoxyribonuclease [Staphylococcus
lugdunensis M23590]
Length = 142
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISD A L + + +L + I + N+ +IGL
Sbjct: 5 KILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEEYGIEQLTNIIKSNNVDTIVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + +++ + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 65 PKNMNNSIGFRGEASIHYKELILEAMPDMKVIMWDERLSTMAAERSLLEADVSRQKRKKV 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD I
Sbjct: 125 IDKMAAVFILQGYLDSI 141
>gi|295085224|emb|CBK66747.1| conserved hypothetical protein TIGR00250 [Bacteroides xylanisolvens
XB1A]
Length = 138
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ E ++ E + IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQLIANGLTTVSTHELLNFIGE---YMAKEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRYPDLPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ F
Sbjct: 118 ALVDEISATIILQTYLESKRF 138
>gi|325107974|ref|YP_004269042.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
gi|324968242|gb|ADY59020.1| Holliday junction resolvase [Planctomyces brasiliensis DSM 5305]
Length = 155
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ ID GTKR+GLAIS P + A P + R + Q + ++ + ++
Sbjct: 6 PETGTLLGIDFGTKRVGLAISTPDQSIASPLEIIHRSQPAQDSKKICKICNEFRVKGLVV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP++M+GSEG + R F +P ++WDER T+ A L +S+ KR
Sbjct: 66 GLPVHMSGSEGGKAKEARVFGDWC-GEITQLPVIYWDERFTSALADNHLRQSTMSQAKRK 124
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA ++LQ L+
Sbjct: 125 KHLDKLAAQVMLQSFLE 141
>gi|322388593|ref|ZP_08062193.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
gi|321140513|gb|EFX36018.1| crossover junction endodeoxyribonuclease [Streptococcus infantis
ATCC 700779]
Length = 136
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + L + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGEFGFERLKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|293374256|ref|ZP_06620584.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325844837|ref|ZP_08168289.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
gi|292647089|gb|EFF65071.1| RNAse YqgF [Turicibacter sanguinis PC909]
gi|325489024|gb|EGC91412.1| RNAse H domain protein, YqgF family [Turicibacter sp. HGF1]
Length = 143
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
I +DLGT+ G+AISD AH ++ + + + T I+ ++G
Sbjct: 1 MKILGLDLGTRTCGIAISDALGMMAHGVETFRFEENHYKKAIQHVQELVKTHKISKIVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP NMNGS G R T+ F ++ V + WDERLTT+ +++LI +VSR KR +
Sbjct: 61 LPKNMNGSIGERGQVTQEFAK-KLEEATNVTVILWDERLTTMQVERVLIQADVSRNKRKK 119
Query: 135 KVDSIAAALILQEVLDR 151
VD +AA +ILQ LD
Sbjct: 120 VVDKMAATIILQSYLDS 136
>gi|325568881|ref|ZP_08145174.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
gi|325157919|gb|EGC70075.1| crossover junction endodeoxyribonuclease [Enterococcus
casseliflavus ATCC 12755]
Length = 143
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G++ +G+A+SDP A + + L + ++ F++G
Sbjct: 1 MRIMGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR
Sbjct: 61 LPKNMNNTIGPRAEASMAYGA-AIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 120 KVIDKLAAVMILQNYLD 136
>gi|319935504|ref|ZP_08009939.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
gi|319809535|gb|EFW05952.1| Holliday junction resolvase [Coprobacillus sp. 29_1]
Length = 140
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
+ I +DLG++ G+AISDP A K A + + + NI ++
Sbjct: 1 MEKILGLDLGSRTCGIAISDPLGIIAQGVETYRFKDNHYKSAAYHIKTIVQENNIHTIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F +++ + V + DERLTTV + LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIDF-KERLEKMMDVEVILVDERLTTVMMENQLIFADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD
Sbjct: 120 EVIDKLAAVQILQGYLDSQR 139
>gi|225028523|ref|ZP_03717715.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
gi|224954166|gb|EEG35375.1| hypothetical protein EUBHAL_02802 [Eubacterium hallii DSM 3353]
Length = 145
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFI 72
+ +D GTK +G+A+SD A + RK K+ QT + + I ++ +
Sbjct: 2 KERWMGLDYGTKTVGVAVSDALGITAQGVETVTRKSNKKLRQTLARIEALIEEYEVSKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP NMN + G R T+ F M+ R+ + V WDERLTT+ +++IL + V R+ R
Sbjct: 62 LGLPKNMNNTLGERAEETKEF-QAMLQRRTGLEVVLWDERLTTMESERILQEGGVRRENR 120
Query: 133 IQKVDSIAAALILQEVLD 150
+++D +AA LILQ +D
Sbjct: 121 KERIDWMAATLILQSYMD 138
>gi|239637577|ref|ZP_04678549.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596795|gb|EEQ79320.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 142
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIEQLVEIIKQHGVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD IS
Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142
>gi|52840824|ref|YP_094623.1| Holliday junction resolvase-like protein [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|296106167|ref|YP_003617867.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
gi|52627935|gb|AAU26676.1| YqgF [Legionella pneumophila subsp. pneumophila str. Philadelphia
1]
gi|295648068|gb|ADG23915.1| putative ribonuclease [Legionella pneumophila 2300/99 Alcoy]
Length = 142
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P D G KRIG+A+ A P + K + IT N A I+G
Sbjct: 5 PRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIPDWNTIQKVITQWNPQALIVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ E + R F + ++ +P DERL+TV A+ L + R+ +
Sbjct: 65 LPTCIDDRELYTTSAARRFAK-QLHKRFSLPVHLVDERLSTVEARGYLFEQGGYRQIKKA 123
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L +
Sbjct: 124 EVDSIAACVILEQWLQQ 140
>gi|21283295|ref|NP_646383.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MW2]
gi|49483861|ref|YP_041085.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49486449|ref|YP_043670.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57650498|ref|YP_186511.1| hypothetical protein SACOL1671 [Staphylococcus aureus subsp. aureus
COL]
gi|87160105|ref|YP_494268.1| hypothetical protein SAUSA300_1573 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195425|ref|YP_500229.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148268097|ref|YP_001247040.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150394165|ref|YP_001316840.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus JH1]
gi|151221729|ref|YP_001332551.1| hypothetical protein NWMN_1517 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509843|ref|YP_001575502.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221141114|ref|ZP_03565607.1| hypothetical protein SauraJ_05678 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253316599|ref|ZP_04839812.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253732271|ref|ZP_04866436.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253733133|ref|ZP_04867298.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006401|ref|ZP_05145002.2| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257425741|ref|ZP_05602165.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428401|ref|ZP_05604799.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431039|ref|ZP_05607418.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433725|ref|ZP_05610083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436640|ref|ZP_05612684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257793691|ref|ZP_05642670.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258411010|ref|ZP_05681290.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|258420188|ref|ZP_05683143.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|258424042|ref|ZP_05686924.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|258438190|ref|ZP_05689474.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|258443653|ref|ZP_05691992.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|258446860|ref|ZP_05695014.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448774|ref|ZP_05696886.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|258450557|ref|ZP_05698619.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|258453593|ref|ZP_05701571.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|269203242|ref|YP_003282511.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893119|ref|ZP_06301353.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|282904197|ref|ZP_06312085.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282906023|ref|ZP_06313878.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908935|ref|ZP_06316753.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911253|ref|ZP_06319055.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914421|ref|ZP_06322207.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282916885|ref|ZP_06324643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282919391|ref|ZP_06327126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282920163|ref|ZP_06327888.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282924716|ref|ZP_06332384.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282928250|ref|ZP_06335855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|283958377|ref|ZP_06375828.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024673|ref|ZP_06379071.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus 132]
gi|293503496|ref|ZP_06667343.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293510513|ref|ZP_06669219.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|293531053|ref|ZP_06671735.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|294848645|ref|ZP_06789391.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|295406738|ref|ZP_06816543.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295428193|ref|ZP_06820825.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296276723|ref|ZP_06859230.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus MR1]
gi|297207664|ref|ZP_06924099.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297245680|ref|ZP_06929545.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297590840|ref|ZP_06949478.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|300911746|ref|ZP_07129189.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|304380787|ref|ZP_07363454.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|54039586|sp|P67490|RUVX_STAAN RecName: Full=Putative Holliday junction resolvase
gi|54039587|sp|P67491|RUVX_STAAW RecName: Full=Putative Holliday junction resolvase
gi|54042291|sp|P67489|RUVX_STAAM RecName: Full=Putative Holliday junction resolvase
gi|62900903|sp|Q5HFE6|RUVX_STAAC RecName: Full=Putative Holliday junction resolvase
gi|62900976|sp|Q6G8V3|RUVX_STAAS RecName: Full=Putative Holliday junction resolvase
gi|62900977|sp|Q6GG87|RUVX_STAAR RecName: Full=Putative Holliday junction resolvase
gi|146325609|sp|Q2FGB0|RUVX_STAA3 RecName: Full=Putative Holliday junction resolvase
gi|146325610|sp|Q2FXW1|RUVX_STAA8 RecName: Full=Putative Holliday junction resolvase
gi|172048919|sp|A6QHF7|RUVX_STAAE RecName: Full=Putative Holliday junction resolvase
gi|189046106|sp|A6U285|RUVX_STAA2 RecName: Full=Putative Holliday junction resolvase
gi|189046107|sp|A5ITE1|RUVX_STAA9 RecName: Full=Putative Holliday junction resolvase
gi|189046108|sp|A8Z4F4|RUVX_STAAT RecName: Full=Putative Holliday junction resolvase
gi|21204735|dbj|BAB95431.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49241990|emb|CAG40687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244892|emb|CAG43353.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284684|gb|AAW36778.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus COL]
gi|87126079|gb|ABD20593.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202983|gb|ABD30793.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741166|gb|ABQ49464.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH9]
gi|149946617|gb|ABR52553.1| Holliday junction resolvase YqgF [Staphylococcus aureus subsp.
aureus JH1]
gi|150374529|dbj|BAF67789.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368652|gb|ABX29623.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253724060|gb|EES92789.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253728889|gb|EES97618.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH130]
gi|257271435|gb|EEV03581.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275242|gb|EEV06729.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278242|gb|EEV08884.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281818|gb|EEV11955.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283991|gb|EEV14114.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257787663|gb|EEV26003.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257840160|gb|EEV64624.1| Holliday junction resolvase [Staphylococcus aureus A9763]
gi|257843899|gb|EEV68293.1| Holliday junction resolvase [Staphylococcus aureus A9719]
gi|257845663|gb|EEV69695.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|257848234|gb|EEV72225.1| Holliday junction resolvase YqgF [Staphylococcus aureus A9299]
gi|257851059|gb|EEV75002.1| Holliday junction resolvase YqgF [Staphylococcus aureus A8115]
gi|257854435|gb|EEV77384.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858052|gb|EEV80941.1| Holliday junction resolvase YqgF [Staphylococcus aureus A6224]
gi|257861715|gb|EEV84514.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|257864324|gb|EEV87074.1| Holliday junction resolvase YqgF [Staphylococcus aureus A5937]
gi|262075532|gb|ACY11505.1| hypothetical protein SAAV_1608 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941102|emb|CBI49488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313551|gb|EFB43946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317201|gb|EFB47575.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282319372|gb|EFB49724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|282321602|gb|EFB51927.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M899]
gi|282324948|gb|EFB55258.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327199|gb|EFB57494.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331315|gb|EFB60829.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282590057|gb|EFB95139.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|282594511|gb|EFB99496.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|282595815|gb|EFC00779.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus C160]
gi|282764437|gb|EFC04563.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|283470893|emb|CAQ50104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|283790526|gb|EFC29343.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920321|gb|EFD97387.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus M1015]
gi|291095162|gb|EFE25427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291466877|gb|EFF09397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|294824671|gb|EFG41094.1| hypothetical protein SKAG_00712 [Staphylococcus aureus A9754]
gi|294968485|gb|EFG44509.1| hypothetical protein SMAG_01910 [Staphylococcus aureus A8819]
gi|295128551|gb|EFG58185.1| hypothetical protein SIAG_00722 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887681|gb|EFH26579.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297177331|gb|EFH36583.1| hypothetical protein SLAG_01773 [Staphylococcus aureus A8796]
gi|297575726|gb|EFH94442.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus MN8]
gi|298694896|gb|ADI98118.1| probable Holliday junction resolvase [Staphylococcus aureus subsp.
aureus ED133]
gi|300885992|gb|EFK81194.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333290|gb|ADL23483.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751445|gb|ADL65622.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304340663|gb|EFM06596.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312437916|gb|ADQ76987.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus TCH60]
gi|312830003|emb|CBX34845.1| uncharacterised protein family (UPF0081) family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129897|gb|EFT85887.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS03]
gi|315195516|gb|EFU25903.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS00]
gi|315198687|gb|EFU29015.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140497|gb|EFW32351.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144036|gb|EFW35805.1| conserved hypothetical protein TIGR00250 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323439037|gb|EGA96769.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O11]
gi|323442820|gb|EGB00445.1| Holliday junction resolvase-like protein [Staphylococcus aureus
O46]
gi|329314291|gb|AEB88704.1| Putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus T0131]
gi|329727568|gb|EGG64024.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728326|gb|EGG64763.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21189]
gi|329733081|gb|EGG69418.1| RNAse H domain protein, YqgF family [Staphylococcus aureus subsp.
aureus 21193]
Length = 142
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G++ +G+AISD A L + +L+ I N+ +IGL
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 65 PKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQV 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 125 IDKMAAVFILQGYLDSL 141
>gi|283770690|ref|ZP_06343582.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
gi|283460837|gb|EFC07927.1| Holliday junction resolvase [Staphylococcus aureus subsp. aureus
H19]
Length = 142
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G++ +G+AISD A L + +L+ I N++ +IGL
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVSTVVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 65 PKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQV 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 125 IDKMAAVFILQGYLDSL 141
>gi|307711065|ref|ZP_07647487.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617027|gb|EFN96205.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 136
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEELFDLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|300173637|ref|YP_003772803.1| putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
18811]
gi|299888016|emb|CBL91984.1| Putative Holliday junction resolvase [Leuconostoc gasicomitatum LMG
18811]
Length = 143
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G++ +G+++SDP A + + L I + + ++G
Sbjct: 1 MRILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDENEFGLQRLGEIIKEKQAKSVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN SEGPR + R + + +R +P F DERLTTV A+++LI+ +VSRKKR
Sbjct: 61 LPKNMNNSEGPRAEAARNYAKMVEERF-ELPTDFQDERLTTVQAERMLIEEADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D IAA ILQ LD
Sbjct: 120 QVIDKIAAEFILQNYLD 136
>gi|229822860|ref|ZP_04448930.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
gi|229787673|gb|EEP23787.1| hypothetical protein GCWU000282_00149 [Catonella morbi ATCC 51271]
Length = 142
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
+ I +D+G+K +G+A+SD A + + LL + + +IG
Sbjct: 3 KRIMGLDVGSKTVGVAVSDLMGWTAQGLETIRIDEAAGDLGYDRLLELVDQHQVKELVIG 62
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRI 133
LP NMN S GPR ++ A+ + + + + DERLTT A+++L+ + NVSRKKR
Sbjct: 63 LPKNMNNSLGPRAEASMAYGEGISKLRPELTIHYQDERLTTSQAERMLVTEGNVSRKKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q +D +AA +ILQ LDRI+
Sbjct: 123 QVIDKLAAVIILQNYLDRIN 142
>gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661]
gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661]
Length = 140
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D GTK IG+AI A P L + T ++ + + ++G
Sbjct: 2 SHMTLLAFDFGTKSIGVAIGQQLTGTARPLAALKAQDGTPDWNKIEALLKEWEPDRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E P R F + I + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGTEQPLTARARKFAN-RIHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 121 SVDSLSAVIILESWFEN 137
>gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
Length = 143
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQ-RLQGRFGVTVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|307704051|ref|ZP_07640982.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
gi|307709897|ref|ZP_07646344.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|307619268|gb|EFN98397.1| Holliday junction resolvase, putative [Streptococcus mitis SK564]
gi|307622402|gb|EFO01408.1| Holliday junction resolvase, putative [Streptococcus mitis SK597]
Length = 136
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|255008472|ref|ZP_05280598.1| Holliday junction resolvase-like protein [Bacteroides fragilis
3_1_12]
gi|313146201|ref|ZP_07808394.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134968|gb|EFR52328.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 138
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ +++ E + IIGL
Sbjct: 1 MSRIIAIDYGRKRTGIAVSDAMQIIANGLTTVPSHELLDFIT---NYVKQEPVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +I+ + +K R
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLRKRLPDIPVEYVDERFTSVLAHRTMIEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESKR 137
>gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis
JLW8]
gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8]
Length = 156
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVK-SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL 59
M ++ E + + + + + D G +RIG+A+ + A+P + + +
Sbjct: 1 MQLIDNEKVYNQAHVQSGTVLAFDFGERRIGIAVGEHLLASANPLMTIDNESNEIRFQII 60
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
++ ++GLPL+++GSE + F ++ + +P DER ++ A
Sbjct: 61 TKLVSEWQPRLLVVGLPLSLDGSEHGVTQLCKKFAR-RLNGRFNLPVALIDERYSSAEAS 119
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
Q+L + + + + + +D +AA ILQ D+ S
Sbjct: 120 QLLNEAGIRGRAQKEMLDQVAAQTILQSYFDQAS 153
>gi|262198569|ref|YP_003269778.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
gi|262081916|gb|ACY17885.1| Holliday junction resolvase YqgF [Haliangium ochraceum DSM 14365]
Length = 139
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+D+G K IG+A SD AHP + R+ + + ++ ++GL
Sbjct: 1 MTRALGLDVGMKTIGVAGSDELGLAAHPVETIARRGTGPDVARVCALVSEREATDVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYV-PFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL ++G EG R R + + WDER +T + +++LI+ ++SR+KR Q
Sbjct: 61 PLELSGQEGRRARRVRVLIDALRAALPDEVAVHTWDERFSTAAVERVLIEADMSRRKRKQ 120
Query: 135 KVDSIAAALILQEVLD 150
+D AAA ILQ LD
Sbjct: 121 VIDKQAAAYILQGWLD 136
>gi|77461533|ref|YP_351040.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
Pf0-1]
gi|126352256|sp|Q3K5A5|RUVX_PSEPF RecName: Full=Putative Holliday junction resolvase
gi|77385536|gb|ABA77049.1| putative holliday junction resolvase [Pseudomonas fluorescens
Pf0-1]
Length = 145
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + +PF DERLTT A+ + L+ R VD
Sbjct: 66 MDGTPSEMCARAEKFAR-RLNGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD + L
Sbjct: 125 AIAAALLLQGWLDENTAL 142
>gi|225873782|ref|YP_002755241.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
ATCC 51196]
gi|225794196|gb|ACO34286.1| conserved hypothetical protein TIGR00250 [Acidobacterium capsulatum
ATCC 51196]
Length = 146
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G +R+G+A+SD A P LVR Q L + ++G PL M
Sbjct: 1 MALDVGDRRVGVAVSDELGLTAQPVLTLVRTNRKQDMKSLGRLLRRFGCTEVVVGNPLYM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G P+ +AF + + +P WDERLTT A + L + + VD +
Sbjct: 61 SGDISPQALKAQAFAAWVREEF-GLPVHLWDERLTTTEAHRHLHAAGRPGSEHREVVDQV 119
Query: 140 AAALILQEVL 149
AA LIL L
Sbjct: 120 AAVLILDGFL 129
>gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS]
gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS]
gi|122977019|sp|Q1B9H9|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase
gi|167012737|sp|A1UFI4|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase
gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS]
gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS]
Length = 169
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
ID+G+ R+G+A SDP A P + R+K + L +T +
Sbjct: 17 PGRGRRIGIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + GP H + R VP DERLTTVSAQ+ L + V K +
Sbjct: 77 VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD+
Sbjct: 137 RAMIDQVAAVGILQSWLDQRR 157
>gi|206577149|ref|YP_002236600.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
342]
gi|226730741|sp|B5XUA1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase
gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
342]
Length = 138
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P P L + + + A I+GL
Sbjct: 2 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARNFAN-KIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|67923975|ref|ZP_00517429.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
gi|67854195|gb|EAM49500.1| Conserved hypothetical protein 250 [Crocosphaera watsonii WH 8501]
Length = 143
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I +D+G KRIG+A D A + RK Q +L + +T N+ ++
Sbjct: 1 MERISALGLDVGKKRIGVAGCDGTGLIATGLTTIERKSFPQDVQQLQALVTERNVQLLVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP M+GS G + + F I + + +P + DERLT+V A+ L +
Sbjct: 61 GLPYCMDGSIGFQAKQVQKFAK-RISKALELPVEYMDERLTSVEAETHLKAQKKYSRHNK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD +AA +ILQ+ LD+
Sbjct: 120 GLVDRLAATIILQQWLDQRR 139
>gi|70726304|ref|YP_253218.1| Holliday junction resolvase-like protein [Staphylococcus
haemolyticus JCSC1435]
gi|146291068|sp|Q4L6W3|RUVX_STAHJ RecName: Full=Putative Holliday junction resolvase
gi|68447028|dbj|BAE04612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 142
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISD A L + +L++ I N+ + +IGL
Sbjct: 5 KILGLDVGSKTVGVAISDLMGWTAQGLDTLRINEELEDYGIEQLVTIIKENNVGSVVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 65 PKNMNNSIGFRGEASLRYKELLKESLPDIEIIMWDERLSTMAAERSLLEADVSRQKRKKV 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD I
Sbjct: 125 IDKMAAVFILQGYLDSI 141
>gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|167016517|sp|A1JPT6|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase
gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica
W22703]
Length = 140
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A + T ++ + ++GL
Sbjct: 3 NRTIVAFDFGTKSIGVAIGQEVTGTARALTSFKAQDGTPDWQKVEKLLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARRFAN-RLHGRFGVQIALQDERLSTVEARANLFDSGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ D
Sbjct: 122 VDAASAVIILESWFDE 137
>gi|188534953|ref|YP_001908750.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
Length = 140
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+Q S D GTK IG+AI A P L + + + + ++G
Sbjct: 2 SSQTFLSFDFGTKSIGVAIGQRLTGTARPLNALKAQDGIPDWNRIEALLKEWQPERVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGSEQPLTARARKFAN-RLHGRFGVQVDLHDERLSTVEARAELFERGGFRALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VDS++A +IL+ +
Sbjct: 121 NVDSLSAVIILESWFEN 137
>gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM 10]
gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua]
gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516]
gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides
F]
gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 31758]
gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola]
gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1]
gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis YPIII]
gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92]
gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|32130051|sp|Q8ZHG2|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase
gi|124107446|sp|Q1CB76|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase
gi|124107447|sp|Q1CEW9|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase
gi|167016518|sp|A7FEZ0|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase
gi|167016519|sp|A4TI76|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase
gi|226695321|sp|A9R307|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase
gi|226695322|sp|B1JNP5|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase
gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM 10]
gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Yersinia pestis biovar Microtus str. 91001]
gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516]
gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua]
gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F]
gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia
pseudotuberculosis IP 31758]
gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola]
gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
YPIII]
gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004]
gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038]
gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 140
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A + T ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARRFAN-RLHGRFGVQVALQDERLSTVEARANLFDRGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ D
Sbjct: 122 VDAASAVIILESWFDE 137
>gi|116491182|ref|YP_810726.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118587361|ref|ZP_01544787.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290890698|ref|ZP_06553768.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
gi|122276636|sp|Q04ER1|RUVX_OENOB RecName: Full=Putative Holliday junction resolvase
gi|116091907|gb|ABJ57061.1| RNase H-like ribonuclease [Oenococcus oeni PSU-1]
gi|118432185|gb|EAV38925.1| Hollyday junction resolvase [Oenococcus oeni ATCC BAA-1163]
gi|290479673|gb|EFD88327.1| hypothetical protein AWRIB429_1158 [Oenococcus oeni AWRIB429]
Length = 144
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A SDP A + + L I+ + ++ +IG
Sbjct: 1 MRLLGLDVGSKTVGVAQSDPLGWTASSIEIIRINEAQGEFGLDRLGQIISEKKVSGIVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV ++R + + +R +P + DERLT+V A ++LI+ ++SR KR
Sbjct: 61 LPKNMNNTEGPRVEASRNYGKMVSERF-GLPIDYQDERLTSVEANRMLIEEADLSRAKRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
+ +DS+AA LILQ LD+ L +
Sbjct: 120 KVIDSLAAQLILQNYLDKKGRLTNG 144
>gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
gi|225201987|gb|EEG84341.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
Length = 139
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ + D GTK IG+AI A P K ++ I ++G
Sbjct: 2 SNKTVMGFDFGTKSIGVAIGQEITGTARPLASFKAKDGIPDWAQIEKIIKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E + F + + + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGTEQLVTAQAKKFAN-RLHGRFGVQIALHDERLSTVEARAHLFERGGYRSLDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 121 SVDAASAVIILESWFEQ 137
>gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis
str. MC2 155]
gi|226731631|sp|A0QWQ5|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase
gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 170
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFL---VRKKVTQTALELLSFITTENIAA 70
ID+GT RIG+A SDP A P + R K + L + +
Sbjct: 16 PGRGRRIGIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRRLAALVKEYEAVE 75
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLP + H + R P DERLTTVSAQ+ L + V +
Sbjct: 76 VIVGLPRTLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSAQRSLREAGVRAR 135
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+ +D +AA ILQ LD+
Sbjct: 136 GQKAVIDQVAAVGILQGWLDQ 156
>gi|53712972|ref|YP_098964.1| Holliday junction resolvase-like protein [Bacteroides fragilis
YCH46]
gi|60681184|ref|YP_211328.1| Holliday junction resolvase-like protein [Bacteroides fragilis NCTC
9343]
gi|253563050|ref|ZP_04840507.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265763069|ref|ZP_06091637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|62900958|sp|Q64VP6|RUVX_BACFR RecName: Full=Putative Holliday junction resolvase
gi|81315746|sp|Q5LER0|RUVX_BACFN RecName: Full=Putative Holliday junction resolvase
gi|52215837|dbj|BAD48430.1| putative endonuclease [Bacteroides fragilis YCH46]
gi|60492618|emb|CAH07390.1| putative Holliday junction resolvase [Bacteroides fragilis NCTC
9343]
gi|251946826|gb|EES87108.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263255677|gb|EEZ27023.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301162673|emb|CBW22220.1| putative Holliday junction resolvase [Bacteroides fragilis 638R]
Length = 138
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SD + A+ + ++ +++ E++ IIGL
Sbjct: 1 MSRIVAIDYGRKRTGIAVSDTMQIIANGLTTVPTHELLDFIT---NYVKQESVERIIIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + FV ++ R +P + DER T+V A + +++ + +K R
Sbjct: 58 PKQMNNEVSENMKNIEPFVRSLKKRLPDMPVEYVDERFTSVLAHRTMLEAGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLD 150
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLE 134
>gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
Length = 144
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +DLG+KRIG+A+SD A + R + +L + + +IGLP
Sbjct: 1 MRILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G G A + +++P WDERLTT+ A+++L+ ++SR+KR Q +
Sbjct: 61 RHLDGRLGEGAEEALA-WAAELREHLHIPVHTWDERLTTLQAERVLLQADLSRRKRRQVI 119
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D +AA LILQ LD ++ K
Sbjct: 120 DKLAAGLILQAFLDNRRQTQAEK 142
>gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
NTUH-K2044]
gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|167012731|sp|A6TDV8|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase
gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 138
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P P L + + + A I+GL
Sbjct: 2 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARNFAN-KIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4]
gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|259495711|sp|C0ZZA9|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase
gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis PR4]
gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 177
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIA 69
+ID+G+ RIG+A SDP A P + R K +++ ++
Sbjct: 16 PGRGRRIAIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRIIAIVSEYEAV 75
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
I+GLP + G +G AF + +P DERLTTV+A + L + V
Sbjct: 76 EVIVGLPQTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLTTVTAARNLRESGVKA 135
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ + +D AA ILQ LD S
Sbjct: 136 RGQRPMIDQAAAVEILQGWLDERS 159
>gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591]
gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591]
Length = 143
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQ-RLHGRFGVNVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980]
Length = 143
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SDP A + + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR
Sbjct: 61 LPKNMNNSIGPRAEASMSYGE-KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 120 KVIDKLAAVMILQNYLD 136
>gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str.
'morsitans']
gi|146325608|sp|Q2NRC6|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase
gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 141
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ I + D GT+ IG+AI A P + ++ + +
Sbjct: 1 MAAAGSIMAFDFGTRSIGVAIGQRVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETVV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GSE P R F + M R V V DERL+TV A+ L + R
Sbjct: 61 VGLPLNMDGSEQPLTARVRKFANRMHGR-FGVQVVLHDERLSTVEARAGLFERGGYRALE 119
Query: 133 IQKVDSIAAALILQEVLDRISF 154
KVD+ +A +IL+ L++
Sbjct: 120 KGKVDAGSAVIILESWLEQFPE 141
>gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium
cellulolyticum H10]
gi|254767508|sp|B8I4S7|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase
gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10]
Length = 142
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGL 75
I ID G RIG+AISDP A + K + + L L I ++ +IG
Sbjct: 1 MRILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+NMNG++GPR T F+ I + WDERLTTVSA + + ++ + K+
Sbjct: 61 PINMNGTKGPRTERTEEFIK-KISDLGQFNIIKWDERLTTVSAHRTMNELGIKASKKKGI 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD+++A LILQ LDRI+
Sbjct: 120 VDTMSAVLILQGYLDRIA 137
>gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
Length = 139
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P P L + + + A I+GL
Sbjct: 3 SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARNFAN-KIHGRFGVAIVLHDERLSTVEARAGLFEHGGYRALNKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 122 VDSASAVVILESYFEQ 137
>gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
Length = 142
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G KR G+A++DP + A + +V + +++ E + AF++GL
Sbjct: 1 MARLLAIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKFL---KAYLVREPVEAFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++G + R FV ++ + +P + DER T+V A Q +I ++K R +K
Sbjct: 58 PKGLDGEDTDNTPRVRKFVTHLQNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
+D ++AA+ILQ ++R
Sbjct: 118 GNIDKVSAAIILQSYMERNR 137
>gi|293378151|ref|ZP_06624320.1| RNAse YqgF [Enterococcus faecium PC4.1]
gi|292643015|gb|EFF61156.1| RNAse YqgF [Enterococcus faecium PC4.1]
Length = 143
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SDP A + + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++ + I +P + DERLTTV A+++L++ N SR KR
Sbjct: 61 LPKNMNNSIGPRAEASMLYGE-KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 120 KVIDKLAAVMILQNYLD 136
>gi|307132696|ref|YP_003884712.1| putative Holliday junction resolvase [Dickeya dadantii 3937]
gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937]
Length = 143
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GT+ IG+AI A P L + ++ + A I+GL
Sbjct: 3 NRTLLAFDFGTRSIGVAIGQEITGTARPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + V DERL+TV A+ L + R
Sbjct: 63 PLNMDGTEQPLTARARKFSQ-RLHGRFGVKVDLHDERLSTVEARADLFERGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 138
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P L T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFAN-KIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|330718936|ref|ZP_08313536.1| Holliday junction resolvase-like protein [Leuconostoc fallax KCTC
3537]
Length = 143
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIG 74
I +D+G++ +G+A+SDP A + + L I ++G
Sbjct: 1 MRILGLDVGSRTVGVAVSDPMGWTAQGVEIIRIDEAAKEFGLERLGEIIQETKAKGVVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPR + R + + + + F DERLTTV A+++LI+ +VSRKKR
Sbjct: 61 LPKNMNNTEGPRAQAARDYAKMV-EDNFGLSTDFQDERLTTVQAERMLIEEADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D IAA ILQ LDR
Sbjct: 120 KVIDKIAAEFILQNYLDR 137
>gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae
MTU5]
gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia
massiliae MTU5]
Length = 165
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 12 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVITSLL 71
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP+NM+G+ + + F + + + +P DERLTT +A
Sbjct: 72 NIIEKYKVCGVIIGLPINMSGAVTEQTNIVMQFAE-ELAKSINLPIYLQDERLTTKAANN 130
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L V RK R D++AA++IL+ VLD I +
Sbjct: 131 FLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 165
>gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
23779]
gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus ATCC
23779]
Length = 158
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I ++D+G KRIG+A+ DP R A +P L + + +LL IT + +I
Sbjct: 5 PTHGRIIALDVGNKRIGVAMCDPDRIIASGQPTLPAQPTDKAYAQLLHMITEHEVVEVVI 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL + G G + + +AF ++++ +P +DER T+V A++ L M + + K
Sbjct: 65 GLPLTLRGEVGAQAKAVQAFSR-GLEKRTKIPITLYDERFTSVEAERSLEAMGIKKSKHR 123
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD +AA LILQ+ + I+
Sbjct: 124 DHVDELAAILILQDYMSSIA 143
>gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
gi|150270909|gb|EDM98192.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
Length = 139
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +ID G R G+AISDP A + +K A E+ + + ++G P
Sbjct: 1 MRIMAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+G+EGPR RAF + P WDER TTV A IL K+ + V
Sbjct: 61 RNMDGTEGPRAELYRAFAQQVGQVTGLTPV-LWDERRTTVEAHNILHASGKRMKQHKKTV 119
Query: 137 DSIAAALILQEVLDRIS 153
D++AA LIL+ L R
Sbjct: 120 DAVAATLILEGYLTRRR 136
>gi|186477077|ref|YP_001858547.1| Holliday junction resolvase-like protein [Burkholderia phymatum
STM815]
gi|226725497|sp|B2JFD3|RUVX_BURP8 RecName: Full=Putative Holliday junction resolvase
gi|184193536|gb|ACC71501.1| Holliday junction resolvase YqgF [Burkholderia phymatum STM815]
Length = 151
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P L + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R + F + ++ + +P + DER ++V A+ + S ++
Sbjct: 67 LPMHPDGTPHERTQLAKRFGN-QLNGRFNLPVTWIDERYSSVEAEAGIR----SGTRQAG 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA +ILQ+ LD +S
Sbjct: 122 MLDAEAACIILQQYLDGLS 140
>gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis
z3032]
gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032]
Length = 138
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTSRARTFAN-RLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
Length = 153
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D GT RIGLAI+DP ++FA P R+ A E AA+++GL
Sbjct: 7 RGRLIGVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGL 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ GSE + R F ++ +P +DER T+ A+++LI +SRK+R
Sbjct: 67 PVHTTGSESQKSTEARQFAK-QLEELTKLPVFLFDERFTSADAEEMLIAAGMSRKERKSH 125
Query: 136 VDSIAAALILQEVL 149
+D +AA ++L L
Sbjct: 126 LDKLAAQILLSAFL 139
>gi|260438499|ref|ZP_05792315.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
gi|292809088|gb|EFF68293.1| putative holliday junction resolvase [Butyrivibrio crossotus DSM
2876]
Length = 144
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G++ +G+A+ DP A + RK K+ QT + N ++
Sbjct: 1 MRIIGLDFGSRTVGVAVCDPLMITAQGVEIIRRKEENKLRQTYARIEELCAEYNAERIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN + G RV T F ++R+ + V WDERLTTV+A +++ + R+ R
Sbjct: 61 GLPKNMNNTSGDRVDKTMDF-KAALERRTGLEVVMWDERLTTVAADNAMMEAGIRRENRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ VD IAA LILQ LD ++
Sbjct: 120 EYVDMIAAQLILQGYLDSLA 139
>gi|330446902|ref|ZP_08310553.1| uncharacterised family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491093|dbj|GAA05050.1| uncharacterised family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 142
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P + + + +
Sbjct: 1 MSQSRTVLGFDYGTKSIGVAIGQELTGTATPLAAIKANDGVPNWDNIEKLLKEWQPNLVV 60
Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL++ G E + F + + R DERL+TV A+ L + R
Sbjct: 61 VGLPLDLEGKELETITPRAKKFANRVHGR-FGCQVELHDERLSTVEARAELFERGGYRSL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
ATCC BAA-894]
gi|167012722|sp|A7MJR8|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase
gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894]
Length = 138
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARTFAN-RLHGRFGIKVTLHDERLSTVEARAGLFERGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
Length = 144
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SD + + + + + F++G
Sbjct: 1 MRLMGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRI 133
LP NMN S GPR +++ + ++ K +P F DERLTTV AQ++L + +VSR KR
Sbjct: 61 LPKNMNNSLGPRAEASQQYGK-RLEDKFNLPVDFEDERLTTVEAQRMLTEEADVSRAKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA LILQ LDR
Sbjct: 120 KVIDKLAAGLILQNYLDR 137
>gi|118595162|ref|ZP_01552509.1| Holliday junction resolvase-like protein [Methylophilales bacterium
HTCC2181]
gi|118440940|gb|EAV47567.1| Holliday junction resolvase-like protein [Methylophilales bacterium
HTCC2181]
Length = 148
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+++PN + + D G K+IG+AI + + AHP + + K ++ + + +
Sbjct: 8 SNIRPNTNVIAFDFGEKKIGVAIGNSITKTAHPLETIRKVKKSERIEIIENLLNEWEPGI 67
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPLN +G+E + F I + VP V DER T+V A+ +L + S K
Sbjct: 68 VVVGLPLNEDGTESRLTLLAQNFAK-KIKNRFQVPIVMVDERYTSVEAKILLNENVKSIK 126
Query: 131 KRIQKVDSIAAALILQEVLDR 151
K Q +D +AA +IL DR
Sbjct: 127 KGNQVIDQVAAQIILGSYFDR 147
>gi|54310237|ref|YP_131257.1| Holliday junction resolvase-like protein [Photobacterium profundum
SS9]
gi|62900980|sp|Q6LMM2|RUVX_PHOPR RecName: Full=Putative Holliday junction resolvase
gi|46914678|emb|CAG21455.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 142
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + + D GTK IG+AI A+P L K ++ + +
Sbjct: 1 MSNSRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVV 60
Query: 73 IGLPLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPLN+ G E + F + I + DERL+TV A+ L + R
Sbjct: 61 VGLPLNLEGGELESITPRAKKFAN-RIHGRFGCVVELHDERLSTVEAKAELFEHGGYRAL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|89074104|ref|ZP_01160603.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
gi|89050040|gb|EAR55566.1| Holliday junction resolvase-like protein [Photobacterium sp. SKA34]
Length = 143
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P L K ++ + +
Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGIATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60
Query: 73 IGLPLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL++ G E + F + + + DERL+TV A+ L + R
Sbjct: 61 VGLPLDLKGKELESITPRAKKFAN-RLHGRFGCQVELHDERLSTVEAKAELFERGGYRSL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|332686781|ref|YP_004456555.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
35311]
gi|332370790|dbj|BAK21746.1| putative holliday junction resolvase [Melissococcus plutonius ATCC
35311]
Length = 140
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+A+SD A + +K L I F+IGLP
Sbjct: 1 MGLDVGSKTVGVAVSDLLGWTAQGIEIIRINEEKGQFGFDRLEELAEEYEITKFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN S GPR ++ AF + +P V+ DERLTTV A+++LI+ + SR KR + +
Sbjct: 61 NMNNSIGPRAEASLAFGE-KLQELFQLPVVYQDERLTTVQAERMLIEQADTSRAKRKKVI 119
Query: 137 DSIAAALILQEVLDRISFLES 157
D +AA +ILQ LD +
Sbjct: 120 DKLAAVMILQNYLDSQKHRAN 140
>gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis
SH0165]
gi|254767517|sp|B8F5F8|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase
gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction
endodeoxyribonuclease [Haemophilus parasuis SH0165]
Length = 138
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GT IG A+ A P + ++ I ++GL
Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLPAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P + F + ++ + +P DERLTTV A+ + + + K
Sbjct: 62 PLNMDGTEQPLTQRAKKFAN-RLNGRFNLPVELQDERLTTVEAKSEIFARGGFKALKKGK 120
Query: 136 VDSIAAALILQEVLDRIS 153
VD+I+A LIL+ ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138
>gi|170692129|ref|ZP_02883293.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
gi|170143413|gb|EDT11577.1| Holliday junction resolvase YqgF [Burkholderia graminis C4D1M]
Length = 146
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + E+ I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARPLVIVQNRSREYRFAEVGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ K R
Sbjct: 67 LPMHPDGTPHEMTQLAKRFGN-QLNGRFNLPVTWVDERYSSVEAEATTRAN----KGRAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140
>gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 32953]
gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis PB1/+]
gi|62900961|sp|Q666N9|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase
gi|226695320|sp|B2K0T4|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase
gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia
pseudotuberculosis IP 32953]
gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
PB1/+]
Length = 140
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A + T ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGVAIGQEVTGTARALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARRFAN-RLHGRFGVQIALQDERLSTVEARANLFDRGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ D
Sbjct: 122 VDAASAVIILESWFDE 137
>gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
Length = 140
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + ++ + +P DERLTTV A+ + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFAN-RLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121
Query: 137 DSIAAALILQEVLDRIS 153
D+I+A LIL+ + S
Sbjct: 122 DAISACLILESWFENQS 138
>gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|258616772|ref|ZP_05714542.1| Holliday junction resolvase-like protein [Enterococcus faecium DO]
gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
Length = 143
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAISDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR
Sbjct: 61 LPKNMNNSIGPRAEASMSYGE-KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 120 KVIDKLAAVMILQNYLD 136
>gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 139
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP A + + RKK + LL I ++ ++GL
Sbjct: 1 MSRIMGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV ++ ++ V V+ DER+TT+ ++ +LIDM V R+ R Q
Sbjct: 61 PKNMNNTIGPQSMKVMSFVD-LLKKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQY 119
Query: 136 VDSIAAALILQEVLDRI 152
+D IAA ILQ LDR
Sbjct: 120 IDKIAATFILQTYLDRR 136
>gi|309775358|ref|ZP_07670363.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
gi|308916875|gb|EFP62610.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
3_1_53]
Length = 137
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
I +DLG+K +G+++SD A P + + ++ +I + ++G
Sbjct: 1 MRILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYDAAFEQVQKYIKEFQVTTAVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR +
Sbjct: 61 LPKHMNGDVGIRGEISVMFKEKL--ETLGLEVVLWDERLTTVAAEKILISADVSRKKRKK 118
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 119 IIDQMAAVQILQSYLDSKN 137
>gi|301793470|emb|CBW35843.1| putative Holliday junction resolvase [Streptococcus pneumoniae
INV104]
Length = 136
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + T + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVKELVDTYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEEFFGLPLDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703]
gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703]
Length = 139
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ + + D GT+ IG+AI A P L + T ++ + + I+G
Sbjct: 2 SNRTVMAFDFGTRSIGVAIGQEITGTARPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E P R F + + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGTEQPITARARKFAQ-RLHGRFGVAIQLHDERLSTVEARADLFERGGFRALDKG 120
Query: 135 KVDSIAAALILQEVLDRIS 153
VD+ +A +IL+ ++ S
Sbjct: 121 SVDAASAVIILESWFEQQS 139
>gi|82751216|ref|YP_416957.1| Holliday junction resolvase-like protein [Staphylococcus aureus
RF122]
gi|146325611|sp|Q2YT62|RUVX_STAAB RecName: Full=Putative Holliday junction resolvase
gi|82656747|emb|CAI81176.1| probable Holliday junction resolvase [Staphylococcus aureus RF122]
Length = 142
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G++ +G+AISD A L + +L+ I N+ +IGL
Sbjct: 5 KILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + +++ + V WDERL+T++A++ L++ +VSR+KR Q
Sbjct: 65 PKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQL 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD +
Sbjct: 125 IDKMAAVFILQGYLDSL 141
>gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
gi|189046090|sp|A9WCR4|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase
gi|254767506|sp|B9LH40|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase
gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
Length = 153
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+Q I ++D+G +RIG+AISD R A P + + +++ + ++ ++G
Sbjct: 2 NDQIILALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL M G GP+ + F + + P +DERLT+V+A+Q+L ++ + K
Sbjct: 62 LPLTMRGERGPQAEVVQRFAD-TLSSALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
++D +AA++ILQ+ LD
Sbjct: 121 QIDQVAASIILQDYLDARR 139
>gi|224542878|ref|ZP_03683417.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
gi|224524208|gb|EEF93313.1| hypothetical protein CATMIT_02072 [Catenibacterium mitsuokai DSM
15897]
Length = 140
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFII 73
+ I +DLG++ G+AISD AH + + A + + + NI ++
Sbjct: 1 MEKILGLDLGSRTCGVAISDTLGMLAHGVETYHFSENAYKKCAYHIKNIVEENNIHTIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F +++ + V + DERLTTV A LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIDF-KERLEKMMDVEVILEDERLTTVIATNNLIFGDVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
Q VD +AA ILQ LD+I
Sbjct: 120 QVVDKMAAVEILQGYLDKIR 139
>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
Length = 143
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGVRAEASRDYG-TKLANEFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|261380468|ref|ZP_05985041.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
gi|284796710|gb|EFC52057.1| putative Holliday junction resolvase [Neisseria subflava NJ9703]
Length = 151
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATITGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + + +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGR-RLHGRFNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|306826005|ref|ZP_07459341.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|306828767|ref|ZP_07461959.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|315612311|ref|ZP_07887225.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|331267155|ref|YP_004326785.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
gi|304428945|gb|EFM32033.1| crossover junction endodeoxyribonuclease [Streptococcus mitis ATCC
6249]
gi|304431721|gb|EFM34701.1| crossover junction endodeoxyribonuclease [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|315315704|gb|EFU63742.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 49296]
gi|326683827|emb|CBZ01445.1| Holliday junction resolvase-like protein,putative ribonuclease
[Streptococcus oralis Uo5]
Length = 136
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDSYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
Length = 197
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
P +D+GT RIG+++SDP A P L R +L + A ++
Sbjct: 43 PVGVWLGVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVV 102
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ ++G EG R + ++ R +P DERLTT +A + + + +S + R
Sbjct: 103 GLPMTLSGEEGLAAQRIRQYAQSLSARVAPIPVRLVDERLTTAAAHRRMAERGLSSRARR 162
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 163 GLVDQEAAVQILQHALD 179
>gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286]
Length = 141
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D GTKR G+A+SD + A+ + + +++ E++ I+GL
Sbjct: 1 MGRFLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTLFDYL---KTYLEREDVECIIVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + R FV + + +P +DER T+ AQ+ +ID + +K R
Sbjct: 58 PKQMNNEYSENMKHIRPFVKKLQNLYPDIPVEMYDERFTSALAQKTMIDAGLRKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++ +
Sbjct: 118 ALVDEISAVIILQSYMESLR 137
>gi|225076223|ref|ZP_03719422.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
NRL30031/H210]
gi|224952347|gb|EEG33556.1| hypothetical protein NEIFLAOT_01260 [Neisseria flavescens
NRL30031/H210]
Length = 151
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + + +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGR-RLHGRFNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
Length = 141
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G KR G+A++DP + A+ + V + ++ E++ ++G
Sbjct: 1 MGRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDFIVS---YVQQEHVERIVVGQ 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + + +FV + +R +P F+DER T+V A Q ++ + +K R
Sbjct: 58 PKQANGEDSENMGRINSFVRRLHERLPEIPVEFFDERYTSVLAHQAMLQGGLRKKARQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
VD I+A +ILQ ++ L+
Sbjct: 118 ALVDEISATIILQGWMESRMMLK 140
>gi|309378826|emb|CBX22531.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 142
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G RIG+A D +HP + + + + F++GLP++
Sbjct: 1 MAFDFGEARIGVAQGDAELGLSHPLSTVTGSSNDEKFAAIAKLVQEWQPRYFVVGLPVHT 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E H +R F + + +P + DERL++V A+ +L + V KKR +D +
Sbjct: 61 DGTEHEMTHLSRKFGR-RLHGRFGLPVYWVDERLSSVYAESLLSEARVFGKKRKSVLDQV 119
Query: 140 AAALILQEVLD 150
AA ILQ +
Sbjct: 120 AAQAILQSFFE 130
>gi|167756782|ref|ZP_02428909.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|237734500|ref|ZP_04564981.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167702957|gb|EDS17536.1| hypothetical protein CLORAM_02331 [Clostridium ramosum DSM 1402]
gi|229382320|gb|EEO32411.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 139
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
+ I +DLG++ G+AISD AH + A +++ I I ++
Sbjct: 1 MERILGLDLGSRTCGIAISDTLGMLAHGIETYRFRDDDYDRAAKHVVALINEHQIKTVVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + + V DERLTT AQ LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIMFKEMLEKEVPGLNVVLIDERLTTKVAQDQLIFADVSRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA ILQ LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137
>gi|330684841|gb|EGG96531.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU121]
Length = 142
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRIDENNNELGIDQLVDIIKKHGVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAEKSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD IS
Sbjct: 123 KVIDKMAAVFILQGYLDSIS 142
>gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
gi|189431411|gb|EDV00396.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
Length = 138
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A+SDP + A + ++ L ++I E + IIG
Sbjct: 1 MSRILAIDYGRKRTGIAVSDPLQIIASGLTTVPTHQLMDFLL---NYIKQEQVECIIIGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P +N + + + F++ + +P DER T+V A Q ++ + +K R
Sbjct: 58 PKQLNNEDSENMKNIIPFINRLKKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESRR 137
>gi|261363738|ref|ZP_05976621.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
gi|288568309|gb|EFC89869.1| putative Holliday junction resolvase [Neisseria mucosa ATCC 25996]
Length = 158
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D +HP + + + I ++G
Sbjct: 5 PVGTVLAFDFGEARIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + + +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHADGTEHELTRLSRKFGR-RLHGRFNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ D
Sbjct: 124 VLDQVAAQAILQGFFD 139
>gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 156
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQ 119
+ I + +IGLP++M+G+ + + F + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAEELAESINLPIPVYLQDERLTTKAAN 120
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L V RK R D++AA++IL+ VLD I L
Sbjct: 121 NFLKSFGVKRKDRNNNDDAVAASMILETVLDSIKKL 156
>gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259495709|sp|C6DFI9|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase
gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 139
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I + D GTK IG+AI A P ++ ++ ++ ++G
Sbjct: 2 KSRTILAFDFGTKSIGVAIGQEITGTARPLTSFKAQEGIPDWQKVEKLLSEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E P R F + + + V DERL+TV A+ L + +
Sbjct: 62 LPLNMDGTEQPLTARARKFAN-RLHGRFGVAIALHDERLSTVEARADLFERGGFKALDKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 SVDAASAVIILESWFE 136
>gi|114327615|ref|YP_744771.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
gi|114315789|gb|ABI61849.1| endonuclease involved in recombination [Granulibacter bethesdensis
CGDNIH1]
Length = 168
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
MS+ + DL L NQ + ID G++ IG+A+SD A P + R K+ A E+
Sbjct: 3 MSLFNVPDLQSRLSRNQRLLGIDPGSRIIGIALSDVLLGIASPYGSIRRGKLRVNAEEIA 62
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ E IIGLPL+M+GS GP + R + + +P WDER T+ Q
Sbjct: 63 AIARKEEAGGMIIGLPLSMDGSFGPAAQAARDWA-IALSDATGLPAALWDERETSSRVHQ 121
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+LI ++ RK+R VD +AAA++LQ LD +
Sbjct: 122 LLISSADLGRKRRAAVVDKMAAAVMLQSALDALP 155
>gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1]
gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1]
Length = 175
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTENIAAFI 72
ID+G+ RIG+A+SDP A P + R + + + L + + +
Sbjct: 23 PGRGRRLGIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRRLTTLVGEYEAVEVV 82
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP + G + R VP DER TTV+AQ+ L + V + +
Sbjct: 83 IGLPRTLGNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTAQRELREAGVRARGQ 142
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+D AA ILQ LD+
Sbjct: 143 KSMIDQAAAVGILQNWLDQRR 163
>gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis
URRWXCal2]
gi|75536635|sp|Q4UM37|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase
gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
Length = 154
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ L PN P+ +ID G+K++G+A+S+ R A P ++ LL
Sbjct: 1 MIIKNLQEFYPLLIPNAPLIAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S I + +IGLP++M+G+ + + F + + + +P DERLTT +A
Sbjct: 61 SIIEKYKVCGVVIGLPIDMSGAVTEQTNIVMKFAE-ELAKSINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L V RK R D++AA++IL+ VLD + L
Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSMKKL 154
>gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG]
gi|259649112|dbj|BAI41274.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
Length = 144
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G++ +G+A+SDP A + + Q L +T + AF++G
Sbjct: 1 MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++A+ ++ +P F DERLTTV A ++LI+ + SRK++
Sbjct: 61 LPKNMNNSIGPRAEKSQAYGD-LLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA +ILQ LD
Sbjct: 120 QVIDKLAAQMILQNYLD 136
>gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
Lc 705]
gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705]
gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
MTCC 5462]
Length = 144
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G++ +G+A+SDP A + + Q L +T + AF++G
Sbjct: 1 MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++A+ ++ +P F DERLTTV A ++LI+ + SRK++
Sbjct: 61 LPKNMNNSIGPRAEKSQAYGD-LLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA +ILQ LD
Sbjct: 120 QVIDKLAAQMILQNYLD 136
>gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 144
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G +RIG+A+SDP A P + R+ Q A E+ E + ++G PL+M
Sbjct: 1 MAIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G F + + +P +DERLTTVSA++ILI+ NV R++R VD+
Sbjct: 61 SGQPSEMTSRAEKFARM-LAARTGLPVDLYDERLTTVSAERILIEQNVRRRERRATVDAA 119
Query: 140 AAALILQEVL 149
AA ++L++ L
Sbjct: 120 AAQVLLEDYL 129
>gi|125623030|ref|YP_001031513.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|167012732|sp|A2RHM2|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 143
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + K + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGIRAEASRDYG-TKLANKFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
Length = 144
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G++ +G+A+SDP A + + Q L +T + AF++G
Sbjct: 1 MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++A+ ++ +P F DERLTTV A ++LI+ + SRK++
Sbjct: 61 LPKNMNNSIGPRAEKSQAYGD-LLKETFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA +ILQ LD
Sbjct: 120 QVIDKLAAQMILQNYLD 136
>gi|90580288|ref|ZP_01236095.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
gi|90438590|gb|EAS63774.1| Holliday junction resolvase-like protein [Vibrio angustum S14]
Length = 143
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + D GTK IG+AI A P L K ++ + +
Sbjct: 1 MSQSRSVLGFDYGTKSIGVAIGQELTGTATPLAALKAKDGIPNWDDIEKILKEWLPDLVV 60
Query: 73 IGLPLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL++ G E + F + + + DERL+TV A+ L + R
Sbjct: 61 VGLPLDLEGKELESITPRAKKFAN-RLHGRFGYQVELHDERLSTVEAKAELFERGGYRSL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Madrid E]
gi|6226362|sp|Q9ZDJ8|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase
gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii]
gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia
prowazekii Rp22]
Length = 156
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN+P+ +ID G+K+IG+A+SD A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNKPLIAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + +IGLP++M+G + + F + + + +P DERLTT SA
Sbjct: 61 NIIKKYKVCGIVIGLPIDMSGGVTQQTNIVMKFAE-KLKQSLGLPIYLQDERLTTKSANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L + RK R D++AA++IL+ VL+ I
Sbjct: 120 FLKSFGIKRKDRNHNDDAVAASMILEIVLNAI 151
>gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Iowa]
gi|167012757|sp|A8GRN5|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase
gi|189046103|sp|B0BX42|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase
gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa]
Length = 154
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAE-ELAKSINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|73662454|ref|YP_301235.1| Holliday junction resolvase-like protein [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|146291069|sp|Q49Y54|RUVX_STAS1 RecName: Full=Putative Holliday junction resolvase
gi|72494969|dbj|BAE18290.1| putative endonuclease involved in recombination [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 142
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + L+ I +N+ +I
Sbjct: 3 KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRIDEENNELGIEALVKIIKRDNVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEQLQEALPSLEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD +
Sbjct: 123 KVIDKMAAVFILQGYLDSL 141
>gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
Length = 139
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A+ A L ++ + I+GLP
Sbjct: 4 RTLLAFDFGTKSIGVAVGQEITGTARALTSLKANDGRPDWQQIEKLLKEWQPQLVIVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F + I + V DERL+TV A+ L + R KV
Sbjct: 64 LNMDGTEQLVTSQARNFAN-RIHGRFGVQVKLHDERLSTVEAKAGLFEQGGYRALSKGKV 122
Query: 137 DSIAAALILQEVLDR 151
DS +A +IL+ ++
Sbjct: 123 DSASAVVILESWFEQ 137
>gi|32130063|sp|Q9CJ63|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
Length = 143
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK+R +
Sbjct: 64 PKHMNGDEGIRAEASRDYG-TKLANEFGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
Length = 138
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P L T + + I+GL
Sbjct: 2 SGTLIAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFAN-KIHGRFGVSVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli]
gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli]
Length = 139
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + D G K IG+AI A P L KK E+ + + +
Sbjct: 1 MPETKTVIGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWEEIAQLLKMWSPDVIV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P NM+G+E P R F+ + + +P DERLTTV A+ L + + +
Sbjct: 61 VGVPFNMDGTEQPITREARNFL-MELKNRFEIPVFPVDERLTTVEARSRLFALGGYKALK 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +DSIAA LI++ L+
Sbjct: 120 KKSIDSIAAQLIVEIWLEN 138
>gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
Length = 139
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A+ A L ++ + I+GLP
Sbjct: 4 RTLLAFDFGTKSIGVAVGQEITGTARALTSLKASDGRPDWSQIEKLLKEWQPQLVIVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F + I + V DERL+TV A+ L + R KV
Sbjct: 64 LNMDGTEQLVTSQARNFAN-RIHGRFGVQVQLHDERLSTVEAKAGLFEQGGYRALSKGKV 122
Query: 137 DSIAAALILQEVLDR 151
DS +A +IL+ ++
Sbjct: 123 DSASAVVILESWFEQ 137
>gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
Length = 142
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP-RPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G RIG+AISDP A ++ + + L L I + +IG
Sbjct: 1 MRILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+NMNG++GPR T F+ I + WDERLTTVSA + + ++ + K+
Sbjct: 61 PINMNGTKGPRTERTEEFIK-KISDFGEFNIIKWDERLTTVSAHRTMNELGIKASKKKDI 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD+++A LILQ LDR++
Sbjct: 120 VDTMSAVLILQGYLDRMA 137
>gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
Length = 143
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGIRAEASRDYG-TKLANEFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5]
gi|259495712|sp|C3PN45|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase
gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae
ESF-5]
Length = 154
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAE-ELAKSINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|255066197|ref|ZP_05318052.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
gi|255049407|gb|EET44871.1| putative Holliday junction resolvase [Neisseria sicca ATCC 29256]
Length = 155
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A D +HP + + + I ++G
Sbjct: 5 PAGTVLAFDFGETRIGVAQGDAELGLSHPLATVTGNSNDEKFNAIAKLIREWQPKHLVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + + +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHADGTEHELTRLSRKFGR-RLHGRFNLPIYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ D
Sbjct: 124 VLDQVAAQAILQGFFD 139
>gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246]
gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
gi|259495713|sp|C4K2S0|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase
gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246]
gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
Length = 154
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAE-ELAKSINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC
BAA-895]
gi|167012710|sp|A8APG8|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase
gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895]
Length = 138
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + T + + I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+T+ A+ L + R K
Sbjct: 62 PLNMDGTEQPLTARARKFAN-RIHGRFGVLVTLHDERLSTIEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYFEQ 136
>gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
Length = 138
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S+D G KR G+A++DP + + + + L+ + E + ++G
Sbjct: 1 MARILSVDYGQKRTGIAVTDPLQIICNGLVTVSSSTLVDFLLD---YTKREEVELIVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + R FV +P V++DER T+V A + +ID + +K R
Sbjct: 58 PKQTNGQPSENLERVRQFVARWKKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESKR 137
>gi|313157066|gb|EFR56496.1| RNAse H domain protein, YqgF family [Alistipes sp. HGB5]
Length = 137
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR G+A+SDP R A + K + + E++ ++G
Sbjct: 1 MGRILAIDYGTKRTGIAVSDPLRLIAGGLETVETKGLEAWL---AKYFAAEDVTTIVVGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR--KKRI 133
P M+G+ + VF+DER T+V A + +++ + R ++
Sbjct: 58 PTQMDGTPSETWRFVEPLAARLRRAYPDKEVVFYDERFTSVLAHRTMLESGIGRMARRNK 117
Query: 134 QKVDSIAAALILQEVLD 150
VD I+A +ILQ ++
Sbjct: 118 ALVDKISATIILQSYME 134
>gi|71909503|ref|YP_287090.1| Holliday junction resolvase-like protein [Dechloromonas aromatica
RCB]
gi|146325566|sp|Q478W1|RUVX_DECAR RecName: Full=Putative Holliday junction resolvase
gi|71849124|gb|AAZ48620.1| Holliday junction resolvase YqgF [Dechloromonas aromatica RCB]
Length = 146
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A + AHP + + + + ++GL
Sbjct: 1 MGTVLAFDFGEKRIGVATGETMLCSAHPLTTIHAESNEDRFAAIGKLVAEWQPEQLVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G+ F + R+ +P F DERLT++ A+ L + + K
Sbjct: 61 PTHADGTPHEMTRLATKFGE-RLARRFNLPVSFADERLTSLDAEARLRETGRNSKSAKPL 119
Query: 136 VDSIAAALILQEVLDR 151
+D++AA LILQ +
Sbjct: 120 LDAVAAQLILQTWFES 135
>gi|17230592|ref|NP_487140.1| Holliday junction resolvase-like protein [Nostoc sp. PCC 7120]
gi|75910008|ref|YP_324304.1| Holliday junction resolvase-like protein [Anabaena variabilis ATCC
29413]
gi|32130049|sp|Q8YSI5|RUVX_ANASP RecName: Full=Putative Holliday junction resolvase
gi|146325551|sp|Q3M6H7|RUVX_ANAVT RecName: Full=Putative Holliday junction resolvase
gi|17132194|dbj|BAB74799.1| alr3100 [Nostoc sp. PCC 7120]
gi|75703733|gb|ABA23409.1| Holliday junction resolvase YqgF [Anabaena variabilis ATCC 29413]
Length = 151
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A + R + ++ + + + ++GLP +M
Sbjct: 8 LGLDVGRKRVGVAGCDRTGLIATGITTVERTSFDRDVQQIQNIVNERQVQVLVVGLPYSM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + + +P + DERLT+ A+Q+LI NVS + +D
Sbjct: 68 DGSLGFQARQVQKFTS-RLAKALQLPVEYVDERLTSFQAEQMLIAENVSPSRNKGLIDRK 126
Query: 140 AAALILQEVLD 150
AAALILQ+ LD
Sbjct: 127 AAALILQQWLD 137
>gi|293400452|ref|ZP_06644597.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305478|gb|EFE46722.1| putative Holliday junction resolvase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 140
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
I +DLG++ +G+++SD A P + + ++ +I + ++G
Sbjct: 1 MRILGLDLGSRTLGVSVSDALGMIARPVETIRFEQDDYDSALTQIKKYIDEFQVKKAVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MNG G R + F + + V + WDERLTTV+A++ILI +VSRKKR +
Sbjct: 61 LPKHMNGDVGIRGEISIMFKEKL--ETLGVEVILWDERLTTVAAERILISADVSRKKRKK 118
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ LDR
Sbjct: 119 VIDQMAAVQILQGYLDR 135
>gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 138
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S+D G KR G+A++DP + + + + L+ +I E + ++G
Sbjct: 1 MARILSVDYGKKRTGIAVTDPLQIICNGLVTVSSSTLVDFLLD---YIQKEEVELIVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + + FV +P V++DER T+V A + +ID + +K R
Sbjct: 58 PKQTNGQPSENLERVKQFVARWKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+
Sbjct: 118 ALVDEISATIILQSYLESKR 137
>gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS]
gi|167012736|sp|A3PZ45|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase
gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS]
Length = 169
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFI 72
ID+G R+G+A SDP A P + R+K + L +T +
Sbjct: 17 PGRGRRIGIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVRRLAQLVTELEAVEVV 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + GP H + R VP DERLTTVSAQ+ L + V K +
Sbjct: 77 VGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVSAQRSLREAGVRAKGQ 136
Query: 133 IQKVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD+
Sbjct: 137 RAMIDQVAAVGILQSWLDQRR 157
>gi|70733116|ref|YP_262889.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
Pf-5]
gi|146325591|sp|Q4K4E4|RUVX_PSEF5 RecName: Full=Putative Holliday junction resolvase
gi|68347415|gb|AAY95021.1| conserved hypothetical protein TIGR00250 [Pseudomonas fluorescens
Pf-5]
Length = 145
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+GS F ++ + VPF DERLTT A+ + L R VD
Sbjct: 66 MDGSPSDMCVRAEKFAR-RLNGRFNVPFYTHDERLTTFEAKGERLARGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD + L
Sbjct: 125 AIAAALLLQGWLDENAGL 142
>gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
Length = 138
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+Q + + D GT IG A+ A + ++ I ++GL
Sbjct: 2 SQTVLAFDFGTNSIGCAVGQSITGTAQGLSAFKAQDGIPNWEQIGKVIAQWQPDLLVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P + F ++ + +P DERLTTV A+ + + + K
Sbjct: 62 PLNMDGTEQPLTQRAKKFAK-RLNGRFNLPVELQDERLTTVEAKSEIFTRGGFKALKKGK 120
Query: 136 VDSIAAALILQEVLDRIS 153
VD+I+A LIL+ ++ S
Sbjct: 121 VDAISACLILESWFEQQS 138
>gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC
334]
gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23]
gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|122264241|sp|Q03AZ9|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase
gi|226731624|sp|B3WC70|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase
gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334]
gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23]
gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W]
gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II]
Length = 144
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G++ +G+A+SDP A + + + L + + AF++G
Sbjct: 1 MRLMGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++A+ ++ +P F DERLTTV A ++LI+ + SRK++
Sbjct: 61 LPKNMNNSIGPRAEKSQAYGE-LLKTTFGLPVDFIDERLTTVEASRMLIEEADASRKRQK 119
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA +ILQ LD
Sbjct: 120 QVIDKLAAQMILQNYLD 136
>gi|116510965|ref|YP_808181.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
gi|123125957|sp|Q032W3|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
Length = 143
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+GTK +G+++SD A P + L I ++GL
Sbjct: 4 RILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +MNG EG R ++R + + + + + DERLTT A+++LID V RK R +
Sbjct: 64 PKHMNGDEGIRAEASRDYG-TKLANEFSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 136 VDSIAAALILQEVLD 150
+D +AA LILQ LD
Sbjct: 123 IDKLAAVLILQNYLD 137
>gi|307702671|ref|ZP_07639623.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307623787|gb|EFO02772.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 136
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + F++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFDRIKELVDIYKVERFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV +++A+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +
Sbjct: 61 NMNNTSGPRVEASQAYGA-KLEELFGLPVDYQDERLTTVAAERMLIEQADISRNKRKKVI 119
Query: 137 DSIAAALILQEVLDR 151
D +AA LILQ LDR
Sbjct: 120 DKLAAQLILQNYLDR 134
>gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
Length = 138
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+A+ A P P + + T + + I+GL
Sbjct: 2 SGTLXAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN +G+E P R F + I + V DERL+TV A+ L + R K
Sbjct: 62 PLNXDGTEQPLTARARKFAN-RIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESYXEQ 136
>gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
gi|167667383|gb|EDS11513.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
Length = 142
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R GLA D A P L K ++ + + ++ I+G P
Sbjct: 1 MKILAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+NMNG+EGPR F + + V VP WDER TTVSA L N KKR + +
Sbjct: 61 INMNGTEGPRAQLCADFAG-QLAKLVTVPVRLWDERGTTVSATGFLNATNTRGKKRKEVI 119
Query: 137 DSIAAALILQEVLDRISF 154
D +AA +IL+ L+
Sbjct: 120 DEVAATIILESYLNYRRN 137
>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
Length = 326
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLG++ IG+AISDP A P L R+ + A ++ + ++G P
Sbjct: 1 MRWLGLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++G+ GP + F + + V WDERL+TV A+++LI ++SR++R Q +
Sbjct: 61 RRLDGTRGPEAEAAERFADALREAGVPR-VTLWDERLSTVEAERVLIAADLSRRRRKQII 119
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA +ILQ L G
Sbjct: 120 DRMAATVILQAFLQSQRRQRDGGG 143
>gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
Length = 140
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 KTVLAFDFGTYSIGCAVGQSITGTAQGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + ++ + +P DERLTTV A+ + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFAN-RLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKGKV 121
Query: 137 DSIAAALILQEVLDR 151
D+I+A LIL+ +
Sbjct: 122 DAISACLILESWFEN 136
>gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
Length = 146
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G++ +G+A+SD A + + + ++ +A F+IG
Sbjct: 1 MRLMGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV + R + ++ +P F DERLTTV A+++LI+ + SR KR
Sbjct: 61 LPKNMNNTEGPRVEAARNYGK-LLTETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA+LIL+ L+
Sbjct: 120 KVIDKLAASLILENYLN 136
>gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
Length = 138
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+A+ A L + T ++ + ++GLPL
Sbjct: 5 TLLGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE R F + + + V DERL+TV A+ L + R + VD
Sbjct: 65 NMDGSEQELTARARKFAN-RLHGRFGVRVELQDERLSTVEARAGLFERGGYRALQKGAVD 123
Query: 138 SIAAALILQEVLD 150
S +A +IL++ D
Sbjct: 124 SQSAVIILEDWFD 136
>gi|188582759|ref|YP_001926204.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
gi|179346257|gb|ACB81669.1| Holliday junction resolvase YqgF [Methylobacterium populi BJ001]
Length = 165
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ I ++ + + +DLGTK IG+A+SD GR+ A P + R K T A ++
Sbjct: 1 MNRDEIAAFAEASRGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDAGRIV 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +IGLPLNM+GSEGPR S+R+F N+ +F+DERL+T + +
Sbjct: 61 ALCAAHGVGGLVIGLPLNMDGSEGPRAQSSRSFARNLRPLLPLP-VLFFDERLSTAAVTR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L++ + SR +R + VD +AAA ILQ LD
Sbjct: 120 TLLEADASRARRGEVVDKLAAAYILQSCLD 149
>gi|314936268|ref|ZP_07843615.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
gi|313654887|gb|EFS18632.1| putative Holliday junction resolvase [Staphylococcus hominis subsp.
hominis C80]
Length = 142
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
I +D+G++ +G+AISD A L + L+S I N+ + +I
Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|194098916|ref|YP_002001981.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
NCCP11945]
gi|239999198|ref|ZP_04719122.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
35/02]
gi|240013895|ref|ZP_04720808.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
DGI18]
gi|240016336|ref|ZP_04722876.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
FA6140]
gi|240080456|ref|ZP_04724999.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
FA19]
gi|240113174|ref|ZP_04727664.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
MS11]
gi|240115933|ref|ZP_04729995.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID18]
gi|240118230|ref|ZP_04732292.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID1]
gi|240121464|ref|ZP_04734426.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID24-1]
gi|240123779|ref|ZP_04736735.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
PID332]
gi|240125968|ref|ZP_04738854.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
SK-92-679]
gi|240128482|ref|ZP_04741143.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
SK-93-1035]
gi|254493967|ref|ZP_05107138.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260440253|ref|ZP_05794069.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
DGI2]
gi|268595026|ref|ZP_06129193.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268596594|ref|ZP_06130761.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268599255|ref|ZP_06133422.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268601602|ref|ZP_06135769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268603941|ref|ZP_06138108.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682404|ref|ZP_06149266.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684562|ref|ZP_06151424.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686872|ref|ZP_06153734.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043546|ref|ZP_06569262.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|193934206|gb|ACF30030.1| Putative Holliday junction resolvase [Neisseria gonorrhoeae
NCCP11945]
gi|226513007|gb|EEH62352.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548415|gb|EEZ43833.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268550382|gb|EEZ45401.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268583386|gb|EEZ48062.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268585733|gb|EEZ50409.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268588072|gb|EEZ52748.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622688|gb|EEZ55088.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624846|gb|EEZ57246.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627156|gb|EEZ59556.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012009|gb|EFE03998.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|317164485|gb|ADV08026.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 151
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F ++ + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHADGTEHEMTHLSRKFGR-RLNGRFNLPVYWVDERLSSVYAESLLSEAQVLGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL L+
Sbjct: 124 VLDQVAAQAILHGFLE 139
>gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
Length = 143
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D G R G+A+SDP A P + TQ + + ++GLP
Sbjct: 1 MKVMAVDYGDARTGIALSDPSGFLASPVCVIHETDETQILAKTAEQVARTGAERVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNG+ GPR +AF ++ VP + +DER TT++AQ N KKR +
Sbjct: 61 KNMNGTLGPRAEKAQAFAK-ALEAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKNSI 119
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D+ AA +ILQ+ LD + + K
Sbjct: 120 DAAAATIILQDYLDSVRNTPNGK 142
>gi|323525007|ref|YP_004227160.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
gi|323382009|gb|ADX54100.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1001]
Length = 146
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A + + EL I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRSARALVVVQNRSREYRFAELGKLIAQWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L K R
Sbjct: 67 LPMHPDGTPHEMTQLAKRFGN-QLNGRFNLPVTWVDERYSSVEAEATLRAN----KGRAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASVILQQYLDGLS 140
>gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159]
gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum
DSM 5159]
Length = 161
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D+G +R+G+AISD A P + + L+ I+ + ++GLP
Sbjct: 7 GRTMGLDVGGRRVGVAISDEMGMIASPLATIDLDRDG--LERLVELISRYDPVLIVVGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ M G EG + T+AF + ++ P VFWDERLT+ +A+++L D V RK+R + V
Sbjct: 65 VTMRGREGSQAVETKAFAA-RLAERIDRPIVFWDERLTSSAAERLLTDAGVGRKRRRELV 123
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D++AAAL+LQ LD G
Sbjct: 124 DAVAAALLLQSYLDAQRSQRGRHG 147
>gi|225848600|ref|YP_002728763.1| hypothetical protein SULAZ_0781 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644154|gb|ACN99204.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 138
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D+GTKRIG+A+SDP A P ++ K + S I ++N++ +IGL
Sbjct: 1 MSRILALDIGTKRIGVAVSDPLGITAKPLDYI--KNDDNVFQNIKSLIESQNVSTVVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ + G +G +V T+ F + ++ VF DER TT A++ L +K
Sbjct: 59 PITLKGLQGQQVEYTKEFAEKLKHYIPHINIVFIDERFTTSLAEKHLSQT-KKKKNIKDY 117
Query: 136 VDSIAAALILQEVLDRISFLE 156
+DS++A ILQ LD +SF
Sbjct: 118 IDSLSAVFILQTYLDSLSFGR 138
>gi|217967412|ref|YP_002352918.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
gi|226725514|sp|B8E227|RUVX_DICTD RecName: Full=Putative Holliday junction resolvase
gi|217336511|gb|ACK42304.1| Holliday junction resolvase YqgF [Dictyoglomus turgidum DSM 6724]
Length = 141
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +ID G K IGLAISDP R A K L I N++ ++G P
Sbjct: 1 MRVLAIDWGEKYIGLAISDPLRIIAQGLDVWEIKDEEDFVNRLKKLIKEYNVSEIVLGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++ G E + I V +P F DER TT+ A+++L++ ++ R+ R
Sbjct: 61 ISLRGHENEKTKKIEYVAE-RIKTVVNLPIKFVDERFTTMEAERVLLEGDIKRRDRKLLK 119
Query: 137 DSIAAALILQEVLDRIS 153
+ AA +ILQ+ LD +S
Sbjct: 120 NKQAAVIILQKYLDSLS 136
>gi|227538919|ref|ZP_03968968.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241122|gb|EEI91137.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33300]
Length = 138
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTKRIG+A++DP + A+ + + L +++ TE + F++G P
Sbjct: 1 MRLMAFDYGTKRIGIAVTDPLQIVANALTTVH---PNEIFDFLKNYLQTEQVETFVVGKP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
M+GS+ F+ + + +P DER T+ A ++ + + KR
Sbjct: 58 RQMDGSDSESASHVVGFIRLLKKQFPTIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKG 117
Query: 135 KVDSIAAALILQEVLDRISFL 155
VD+I+A +ILQ +D SFL
Sbjct: 118 LVDTISATIILQSYMDSRSFL 138
>gi|90962084|ref|YP_536000.1| Holliday junction resolvase-like protein [Lactobacillus salivarius
UCC118]
gi|90821278|gb|ABD99917.1| Endonuclease involved in recombination [Lactobacillus salivarius
UCC118]
Length = 143
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGLPL 77
+D+G++ +G+A+SD A + + Q + + + F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDMLGWTAQGVEIVQINEDEQEFGLDRIAELVKENEVVGFVLGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPRV + +A+ +++ K +P F DERLTTV A+++L++ + SRKKR + +
Sbjct: 61 NMNNTSGPRVEAAKAYGE-LLEEKFNLPIDFIDERLTTVEAERMLVEQADASRKKRKKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA+LILQ LD
Sbjct: 120 DKLAASLILQNYLD 133
>gi|260591630|ref|ZP_05857088.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
gi|260536430|gb|EEX19047.1| putative Holliday junction resolvase [Prevotella veroralis F0319]
Length = 139
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + ++ E + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATIPTSDIFDYLT---QYVAKEPVDQLVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PIQPNGQPSENLARVENFVNRWRKLHPEMPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|242373916|ref|ZP_04819490.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis M23864:W1]
gi|242348470|gb|EES40072.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis M23864:W1]
Length = 142
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEKLVEIIQDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|59801001|ref|YP_207713.1| Holliday junction resolvase-like protein [Neisseria gonorrhoeae FA
1090]
gi|293398863|ref|ZP_06643028.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|62900896|sp|Q5F936|RUVX_NEIG1 RecName: Full=Putative Holliday junction resolvase
gi|59717896|gb|AAW89301.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|291610277|gb|EFF39387.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 151
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F ++ + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHADGTEHEMTHLSRKFGR-RLNGRFNLPVYWVDERLSSVCAESLLSEAQVLGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL L+
Sbjct: 124 VLDQVAAQAILHGFLE 139
>gi|242242890|ref|ZP_04797335.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis W23144]
gi|242233665|gb|EES35977.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis W23144]
Length = 142
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
Length = 137
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR GLA++D + A + K++ +++ TE++ F++GL
Sbjct: 1 MGRILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPFL---KNYVDTESVEKFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ + + F+ + ++P DER T+ A Q +ID + +K+R
Sbjct: 58 PKQMDNTASESEVYIKKFLEILTKAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D I+A LILQ L S
Sbjct: 118 ALIDEISATLILQSYLTSQS 137
>gi|319892670|ref|YP_004149545.1| Putative Holliday junction resolvase [Staphylococcus
pseudintermedius HKU10-03]
gi|317162366|gb|ADV05909.1| Putative Holliday junction resolvase [Staphylococcus
pseudintermedius HKU10-03]
gi|323464292|gb|ADX76445.1| Holliday junction resolvase, putative [Staphylococcus
pseudintermedius ED99]
Length = 142
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
I +D+G++ +G+AISD A + ++ L+ I EN+ +I
Sbjct: 3 KHKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELGIDALIDIIQKENVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + +R + + WDERL+T++A++ L++ +VSR KR
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERLSTMAAERSLLEADVSRAKRK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA ILQ LD ++
Sbjct: 123 KVIDKMAAVFILQGYLDGLN 142
>gi|28378868|ref|NP_785760.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
WCFS1]
gi|254557074|ref|YP_003063491.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
JDM1]
gi|300768026|ref|ZP_07077932.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308181068|ref|YP_003925196.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|32130018|sp|Q88V13|RUVX_LACPL RecName: Full=Putative Holliday junction resolvase
gi|28271705|emb|CAD64611.1| endonuclease involved in recombination (putative) [Lactobacillus
plantarum WCFS1]
gi|254046001|gb|ACT62794.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
JDM1]
gi|300494375|gb|EFK29537.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308046559|gb|ADN99102.1| Holliday junction resolvase-like protein [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 144
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--TQTALELLSFITTENIAAFIIG 74
+ +D+G++ +G+AISD A + + + + + F++G
Sbjct: 1 MKLMGLDVGSRTVGVAISDAFGWTAQGVEIIRINEDAEEFGIDRVAELVEELDAGGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPR + + + ++ + ++P F DERLTTV A+++L++ N SRKKR
Sbjct: 61 LPKNMNNTLGPRAEAAQHYGE-LLTARFHLPVDFEDERLTTVEAERMLVEEANTSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA+LILQ LDR
Sbjct: 120 KVIDKLAASLILQNYLDR 137
>gi|254414995|ref|ZP_05028758.1| conserved hypothetical protein TIGR00250 [Microcoleus
chthonoplastes PCC 7420]
gi|196178142|gb|EDX73143.1| conserved hypothetical protein TIGR00250 [Microcoleus
chthonoplastes PCC 7420]
Length = 136
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+KRIG+A D A + R Q + + ++ ++GLP +M
Sbjct: 1 MGLDVGSKRIGVAGCDGTGLIATGLTTIKRTSFEQDVSQFRELVEQRDVQVLVVGLPYSM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G + + + + + +P + DERLT+ A+Q+L +S + +D
Sbjct: 61 NGTLGFQARQVQKYAR-RLSAALQLPVEYVDERLTSFEAEQLLHAEKLSPSRHKALIDRK 119
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LD
Sbjct: 120 AAAIILQQWLDTRR 133
>gi|324999313|ref|ZP_08120425.1| Holliday junction resolvase-like protein [Pseudonocardia sp. P1]
Length = 142
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
+ +D+G R+G+A+ DP A P + R + + + ++ +
Sbjct: 3 RTRGRRLGVDVGAVRVGVAMCDPDGILATPVETVPRDAEHGADVRRIAELVAEHDVVGVV 62
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP N+ G +GP + R F + + VP DER+TTV A + L V +K+
Sbjct: 63 LGLPRNLRGEDGPAARAAREFAD-ALQAGLDVPVELTDERMTTVVAARQLSGRGVKGRKQ 121
Query: 133 IQKVDSIAAALILQEVLDR 151
VD AA ILQ LD+
Sbjct: 122 RSVVDQAAAVQILQGWLDQ 140
>gi|332535114|ref|ZP_08410924.1| putative holliday junction resolvase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035432|gb|EGI71930.1| putative holliday junction resolvase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 149
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Query: 10 VKSLKPNQ--PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
KSLKP + D GTK IG+AI A + + + +
Sbjct: 3 KKSLKPQGERTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDHIAVQVAEWQ 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+G+ + F + + +P DERLTT A+ L +
Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFAN-RLHNHYGIPVQTQDERLTTADAKARLFESGG 121
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ VD+++A +IL+ +
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFES 145
>gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4]
gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4]
Length = 139
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR+GLA++D A+ + +V +I E + F+IGL
Sbjct: 1 MGRILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEVLTYLE---KYIAKEPVEKFVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MNG + + R F + + + V+ DER T+V A + +++ + +K R
Sbjct: 58 PKQMNGQDSDSMQYIRPFATALQRKFPEIELVYVDERFTSVLAHKAMLEGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
+ VD I+A +ILQ L+ I L
Sbjct: 118 ELVDKISATIILQSYLESIYNL 139
>gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
Length = 154
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTKR+G+A+ + A + K +L + + F++GLP
Sbjct: 11 KRVMGFDFGTKRMGVAMGQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQPDGFVVGLP 70
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+GSE F + + +P DERLTT A+ I + V
Sbjct: 71 FNMDGSESDMSRRANKFSK-RLHGRYGLPSYTIDERLTTFEAKHIARQQGHKGHYKSDPV 129
Query: 137 DSIAAALILQEVLDRISFLESSK 159
D +AA IL+ L E S+
Sbjct: 130 DELAAQFILETWLSEFPLSEQSQ 152
>gi|332972979|gb|EGK10919.1| crossover junction endodeoxyribonuclease [Kingella kingae ATCC
23330]
Length = 151
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + D G +RIG+A + AHP + + ++ I +
Sbjct: 1 MHKPPTQGSALAFDFGEQRIGVAQGEASIGIAHPLITITGQSNDDKFAQIAKQIQAWQPS 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP +++G+E R F + R +P + DERL++V A+++L V
Sbjct: 61 CLVVGLPSHLDGTEHEITQLARKFGRRLHGRFA-LPVYWVDERLSSVYAEELLRQAQVFG 119
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
+K+ K+D +AA ILQ D
Sbjct: 120 RKQKAKLDQVAAQAILQSFFDS 141
>gi|119512614|ref|ZP_01631690.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
gi|119462747|gb|EAW43708.1| Holliday junction resolvase-like protein [Nodularia spumigena
CCY9414]
Length = 156
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G KR+G+A D A + R + ++ + + + +IGLP +M
Sbjct: 14 LGLDFGRKRMGVAGCDGTGLIATGLTTIERTSFERDVQQIRNIVDERQVQILVIGLPYSM 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ G + + F + + + +P + DERLT+ A+Q+LI N S + +D
Sbjct: 74 DGTLGFQARQVQKFAK-RLGKALNLPVEYIDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132
Query: 140 AAALILQEVLDRIS 153
AA++ILQ+ LD
Sbjct: 133 AASIILQQWLDSRR 146
>gi|186680854|ref|YP_001864050.1| Holliday junction resolvase-like protein [Nostoc punctiforme PCC
73102]
gi|186463306|gb|ACC79107.1| Holliday junction resolvase YqgF [Nostoc punctiforme PCC 73102]
Length = 158
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G KRIG+A D A + R Q ++ + + ++GLP +M
Sbjct: 14 LGLDFGRKRIGVAGCDRTGLIATGITTIERTSFEQDVEQIRQIVNEREVQILVMGLPYSM 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + + +P + DERLT+ A+Q+LI N S + +D
Sbjct: 74 DGSIGFQARQVQKF-TTRLSKALKLPVEYVDERLTSFQAEQLLIAENRSPSRHKGLIDRK 132
Query: 140 AAALILQEVLD 150
AAALILQ+ LD
Sbjct: 133 AAALILQQWLD 143
>gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
ATCC 33277]
gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277]
Length = 150
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
I +ID G KR GLA++DP + + + + +++ E + F
Sbjct: 9 FCTDMGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDFLRD---YVSREPVERF 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP MN E + R F + +P + DER T+ AQ+ +++ + + K
Sbjct: 66 VLGLPRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMK 125
Query: 132 RIQK--VDSIAAALILQEVLDR 151
R K VD ++A +ILQ LD
Sbjct: 126 RRDKALVDEVSAVIILQSYLDN 147
>gi|295675689|ref|YP_003604213.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
gi|295435532|gb|ADG14702.1| Holliday junction resolvase YqgF [Burkholderia sp. CCGE1002]
Length = 146
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + L I A ++G
Sbjct: 7 REATLLAFDYGVKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R + F + ++ + +P + DER ++V A+ + N R
Sbjct: 67 LPMHPDGTPHERTQLAKRFGN-QLNGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDELS 140
>gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320]
gi|226731639|sp|B4EUS0|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase
gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320]
Length = 139
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ + D GTK IG AI A P K ++ I ++G
Sbjct: 2 SNRTVMGFDFGTKSIGAAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E + F + + + V DERL+TV A+ L + R
Sbjct: 62 LPLNMDGTEQLVTTQAKKFAN-RLHGRFGVQIALHDERLSTVEARAHLFEQGGYRSLDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD+ +A +IL+ +R
Sbjct: 121 SVDATSAVIILESWFER 137
>gi|288802834|ref|ZP_06408271.1| Holliday junction resolvase [Prevotella melaninogenica D18]
gi|288334651|gb|EFC73089.1| Holliday junction resolvase [Prevotella melaninogenica D18]
Length = 139
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP A+ + ++ + +I E ++ +IG
Sbjct: 1 MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEFLN---QYIVKEAVSQLVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
gi|188023917|gb|EDU61957.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
Length = 139
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ + + D GTK IG+A+ A L ++ + I+G
Sbjct: 2 SSRTLLAFDFGTKSIGVAVGQEITGTARSLASLKANDGRPDWQQIEKLLKEWQPQLVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + I + V DERL+TV+A+ L + R
Sbjct: 62 LPLNMDGTEQLVTSQARNFAN-RIHGRFGVKVELHDERLSTVAAKAELFERGGYRALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
KVDS +A +IL+ ++
Sbjct: 121 KVDSASAVVILESWFEQ 137
>gi|261392384|emb|CAX49926.1| conserved hypothetical protein [Neisseria meningitidis 8013]
Length = 151
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E H +R F + + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTEHEMTHLSRKFGR-RLHGRFNLPVYWMDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|325265855|ref|ZP_08132541.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
ATCC 33394]
gi|324982493|gb|EGC18119.1| crossover junction endodeoxyribonuclease [Kingella denitrificans
ATCC 33394]
Length = 159
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + + D G RIG+A + AHP + + ++ I
Sbjct: 1 MLEIPKQGCCLAFDFGKVRIGVAQGESSLHIAHPICTVSGAGNDEKFAKIAQLIKEWQPE 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP +++G+E R F + + P + DERL++V A+++L + V
Sbjct: 61 YLVVGLPTHIDGTEHEMTRLARQFGR-RLHGRFGKPVYWVDERLSSVYAEELLREAAVFG 119
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
KK+ +D +AA IL D
Sbjct: 120 KKQKPVLDQVAAQAILHYFFDN 141
>gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|146325549|sp|Q2IQC1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase
gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-C]
Length = 137
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLG RIGLA++D R A +VR+ + + + ++GLP
Sbjct: 1 MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EGP R F ++ + VP +DERL++ A+ L VS + + +V
Sbjct: 61 LNMDGTEGPSARLARGFA-PRLEAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQV 119
Query: 137 DSIAAALILQEVLDRIS 153
D+ AAA+ILQ LDR +
Sbjct: 120 DAEAAAVILQGWLDRRA 136
>gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638]
gi|167012721|sp|A4WE85|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase
gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638]
Length = 138
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D GTK IG+AI A P + + T + + A I+GL
Sbjct: 2 SGTLLAFDFGTKSIGVAIGQRITGTARPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARKFAN-KIHGRFGAVVKLHDERLSTVEARAGLFEHGGFRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVIILESFFEQ 136
>gi|330812357|ref|YP_004356819.1| holliday junction resolvase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|32130065|sp|Q9F4I8|RUVX_PSEFL RecName: Full=Putative Holliday junction resolvase
gi|10442817|gb|AAG15556.1| hypothetical protein [Pseudomonas fluorescens]
gi|327380465|gb|AEA71815.1| putative holliday junction resolvase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 145
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 LLGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + +PF DERLTT A+ + L+ R VD
Sbjct: 66 MDGTPSDMCLRAEKFAR-RLNGRYNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD + L
Sbjct: 125 AIAAALLLQGWLDANAAL 142
>gi|167570975|ref|ZP_02363849.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
C6786]
Length = 146
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+A+ + R A + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ + F + ++ + +P + DER ++V A+ L S
Sbjct: 63 LVVGLPLHPDGAPHEMTQQAKRFGN-QLNGRFNLPVSWVDERYSSVEARADLRARG-SGA 120
Query: 131 KRIQKVDSIAAALILQEVLDRISFLES 157
R VD+ AA +ILQ+ LD +
Sbjct: 121 DR---VDAEAARIILQQYLDELPDHHE 144
>gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
Length = 152
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ D + + + D GT RIG+A+ A P + + +
Sbjct: 1 MNATSTND--VNTNTARTLLGFDFGTTRIGIAVGQEITATATPINPIKARDGIPNWDTIA 58
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ F++GLPLNM+G+E R F + + + P DERL++ A+
Sbjct: 59 EVVKEWQPDGFVVGLPLNMDGTENEMCQRARKFAN-RLHGRYNKPSYMMDERLSSYEAKG 117
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+I +R + VD +AA +IL+
Sbjct: 118 QVIKEGGNRNFKANSVDGLAAQMILESWF 146
>gi|302346307|ref|YP_003814605.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
gi|302150718|gb|ADK96979.1| RNAse YqgF [Prevotella melaninogenica ATCC 25845]
Length = 139
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP A+ + ++ + +I E ++ +IG
Sbjct: 1 MSRILAIDYGKKRTGLAVTDPLCIIANGLATVPTSELFEFLN---QYIAKEAVSQLVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PIQPNGQPSENLARVEQFVNRWRKAHPELPIDYYDERFTSVIAHQAMIAGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|295425853|ref|ZP_06818533.1| crossover junction endodeoxyribonuclease [Lactobacillus
amylolyticus DSM 11664]
gi|295064456|gb|EFG55384.1| crossover junction endodeoxyribonuclease [Lactobacillus
amylolyticus DSM 11664]
Length = 142
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISD A + K L + + A F++G
Sbjct: 1 MRLIGLDIGSKTVGVAISDELGITAQKLETIPIDESKFNFGMRPLKKIVREYDPAGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+G+ G V ++A+ + +K +P + DERLTTV ++++L+ + V RKKR
Sbjct: 61 LPKNMDGTSGHSVDRSKAYGE-RLKKKFNLPVYYDDERLTTVESRRVLVEEAGVHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus
ATCC 25745]
gi|122265527|sp|Q03ES0|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase
gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745]
Length = 146
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G++ +G+++SD A + + + + + ++ F++G
Sbjct: 1 MRLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN +EGPRV + R + +++ +P F DERLTTV A+++LI+ + SR KR
Sbjct: 61 LPKNMNNTEGPRVEAARNYGK-LLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA+LIL+ L+
Sbjct: 120 KVIDKLAASLILENYLN 136
>gi|270159103|ref|ZP_06187759.1| putative Holliday junction resolvase [Legionella longbeachae
D-4968]
gi|289166062|ref|YP_003456200.1| Holliday junction resolvase [Legionella longbeachae NSW150]
gi|269987442|gb|EEZ93697.1| putative Holliday junction resolvase [Legionella longbeachae
D-4968]
gi|288859235|emb|CBJ13169.1| Holliday junction resolvase [Legionella longbeachae NSW150]
Length = 139
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ D G KRIG+A+ A P L + + I + A ++G
Sbjct: 2 PSSVYLGFDFGYKRIGVAVGQQLTCSASPLATLSARSGVPNWDAVAKVIAQWSPQALVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P ++GSE R F + ++ +P DERL+TV+A++ L RK +
Sbjct: 62 IPTCIDGSELYTTVPARRFAQ-ELHKRFVLPVHLVDERLSTVAAREQLFAQGGYRKIKQS 120
Query: 135 KVDSIAAALILQEVL 149
+VDS+AA +IL++ L
Sbjct: 121 EVDSVAACVILEQWL 135
>gi|228475168|ref|ZP_04059894.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|228270779|gb|EEK12181.1| conserved hypothetical protein [Staphylococcus hominis SK119]
Length = 142
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFII 73
I +D+G++ +G+AISD A L + L+S I N+ + +I
Sbjct: 3 RHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEEDEEFGIDRLVSIIKDNNVGSVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|257867380|ref|ZP_05647033.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873711|ref|ZP_05653364.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257877460|ref|ZP_05657113.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801436|gb|EEV30366.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807875|gb|EEV36697.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811626|gb|EEV40446.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 140
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G++ +G+A+SDP A + + L + ++ F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDEGNFGYDRLAELVKEYEVSRFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPR ++ A+ I+++ +P V+ DERLTTV A+++L++ N SR KR + +
Sbjct: 61 NMNNTIGPRAEASMAYGA-AIEQQFGLPVVYQDERLTTVQAERMLVEQANTSRAKRKKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 120 DKLAAVMILQNYLD 133
>gi|90412043|ref|ZP_01220050.1| Holliday junction resolvase-like protein [Photobacterium profundum
3TCK]
gi|90327021|gb|EAS43400.1| Holliday junction resolvase-like protein [Photobacterium profundum
3TCK]
Length = 142
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + + D GTK IG+AI A+P L K ++ + +
Sbjct: 1 MSNSRSVLAFDYGTKSIGVAIGQELTGTANPLAALKAKDGIPNWDDIGKILKEWQPDLVV 60
Query: 73 IGLPLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL++ G E + F + I + DERL+TV A+ L + R
Sbjct: 61 VGLPLDLEGGELESITPRAKKFAN-RIHGRFGCVVELHDERLSTVEAKADLFERGGYRSL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +R
Sbjct: 120 SKGNIDSQSAVVILESWFER 139
>gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
Length = 138
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D GTK IG+A+ A P + + E+ + + ++GL
Sbjct: 1 MSTIMAFDFGTKSIGVAVGQTVTGTASPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G++ + R F + + R + + DERLTTV A+ L + R + +
Sbjct: 61 PLNMDGTDQHVTRAARKFANRLFGR-FGIETLTQDERLTTVDARARLFEDGGYRALKKDQ 119
Query: 136 VDSIAAALILQEVLDRI 152
VD++AAALIL+ + +
Sbjct: 120 VDALAAALILESYFETL 136
>gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
W83]
gi|62901001|sp|Q7MT06|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase
gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis
W83]
Length = 138
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP + + + + +++ E + F++GL
Sbjct: 1 MGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDFLRD---YVSREPVERFVLGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN E + R F + +P + DER T+ AQ+ +++ + + KR K
Sbjct: 58 PRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDK 117
Query: 136 --VDSIAAALILQEVLDR 151
VD ++A +ILQ LD
Sbjct: 118 ALVDEVSAVIILQSYLDN 135
>gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
Length = 139
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G K IG+A+SDP ++ + RKK + + + ++ ++GL
Sbjct: 1 MSRIMGLDVGNKTIGVALSDPMFLLSNALETIKRKKASVDIERIKQLVEENDVNLIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV ++ ++V V V+ DER+TT+ ++ +L+DM V R+ R +
Sbjct: 61 PKNMNNTIGPQAMRVISFVD-LLKKQVDVEVVYEDERMTTIQSEAVLMDMEVRRENRKKY 119
Query: 136 VDSIAAALILQEVLDRI 152
+D IAA ILQ LDR
Sbjct: 120 IDKIAATFILQTYLDRR 136
>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
Length = 137
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I + D GTKRIG+A++DP + A + K V + +++ E + +F++G+P
Sbjct: 1 MRIMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEYL---KKYVSQEQVESFVVGMP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
++GS+ + F++ + +P V DER T+ A + + + R KR
Sbjct: 58 KQLDGSDSQSAVHVKGFINLLKKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKG 117
Query: 135 KVDSIAAALILQEVL 149
VD+I+A +ILQ+ L
Sbjct: 118 LVDAISAVIILQDYL 132
>gi|319400946|gb|EFV89165.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
Length = 142
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + D + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQDSVPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|223044086|ref|ZP_03614125.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|314933782|ref|ZP_07841147.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
gi|222442480|gb|EEE48586.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|313653932|gb|EFS17689.1| putative Holliday junction resolvase [Staphylococcus caprae C87]
Length = 142
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIGL 75
I +D+G+K +G+AISD A L + EL+ I + +IGL
Sbjct: 5 KIIGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQNELGIEELVDIIKKNQVGTVVIGL 64
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN S G R ++ + + + + + WDERL+T++A++ L++ +VSR+KR +
Sbjct: 65 PKNMNNSIGFRGEASLQYKEKLQEALPSIEIIMWDERLSTMAAERSLLEADVSRQKRKKV 124
Query: 136 VDSIAAALILQEVLDRI 152
+D +AA ILQ LD I
Sbjct: 125 IDKMAAVFILQGYLDSI 141
>gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
Length = 138
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A A P P L + + + A I+GL
Sbjct: 2 SGTFLGFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V + DERL+TV A+ L + R
Sbjct: 62 PLNMDGTEQPLTARARNFAN-KIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS 120
Query: 136 VDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 VDSASAVVILESYFEQ 136
>gi|319949823|ref|ZP_08023842.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
gi|319436514|gb|EFV91615.1| Holliday junction resolvase-like protein [Dietzia cinnamea P4]
Length = 151
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 4/146 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL----SFITTENIAA 70
+D+GT RIG+A DP A P + L I +
Sbjct: 6 TRGRRLGLDVGTARIGVASCDPDGILATPVETIRVVDGDPGWAAELRRLGELIAEYDAVG 65
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLP ++ G E R+F + VP DERLTTV+A L + +
Sbjct: 66 VVVGLPTSLKGRETASTAMARSFADALTTASPEVPVELVDERLTTVTAGAALHGAGRNTR 125
Query: 131 KRIQKVDSIAAALILQEVLDRISFLE 156
K+ +D AA ++LQ +D
Sbjct: 126 KQRDVIDQAAAVVLLQAWIDSRHARR 151
>gi|30249631|ref|NP_841701.1| Holliday junction resolvase-like protein [Nitrosomonas europaea
ATCC 19718]
gi|62901022|sp|Q82U42|RUVX_NITEU RecName: Full=Putative Holliday junction resolvase
gi|30138994|emb|CAD85578.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 148
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + D G +RIG+AI + R AHP + + ++ I ++G
Sbjct: 8 SSGTVLAFDFGKRRIGVAIGEHELRMAHPLTTIDQSMTRPRFEKIAELIEAWQPVLLVVG 67
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L ++ +G+E R F ++ + +P DER TTV A+ +L ++ V+ KK+
Sbjct: 68 LSVHADGTEHEITRLCRRFAR-RLEGRFRIPVALADERYTTVIARSVLEEVGVTGKKQRP 126
Query: 135 KVDSIAAALILQEVLD 150
+D IAA ILQ D
Sbjct: 127 MLDQIAAQHILQTYFD 142
>gi|255014065|ref|ZP_05286191.1| Holliday junction resolvase-like protein [Bacteroides sp. 2_1_7]
gi|256839599|ref|ZP_05545108.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262382117|ref|ZP_06075255.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298375296|ref|ZP_06985253.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
gi|301310690|ref|ZP_07216629.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
gi|256738529|gb|EEU51854.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262297294|gb|EEY85224.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298267796|gb|EFI09452.1| Holliday junction resolvase [Bacteroides sp. 3_1_19]
gi|300832264|gb|EFK62895.1| putative Holliday junction resolvase [Bacteroides sp. 20_3]
Length = 140
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A +D + A+ + +V + + +I+ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKYLSD---YISREPVDLFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + AFV ++ +P ++DER T+V A + +++ + +KKR
Sbjct: 58 PKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQAYLESKKY 138
>gi|15677203|ref|NP_274356.1| Holliday junction resolvase-like protein [Neisseria meningitidis
MC58]
gi|121635046|ref|YP_975291.1| Holliday junction resolvase-like protein [Neisseria meningitidis
FAM18]
gi|254805133|ref|YP_003083354.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha14]
gi|304387351|ref|ZP_07369543.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
ATCC 13091]
gi|32130068|sp|Q9JZ16|RUVX_NEIMB RecName: Full=Putative Holliday junction resolvase
gi|167012740|sp|A1KUG2|RUVX_NEIMF RecName: Full=Putative Holliday junction resolvase
gi|7226581|gb|AAF41712.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|120866752|emb|CAM10505.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668675|emb|CBA06382.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha14]
gi|254669936|emb|CBA04529.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha153]
gi|254673037|emb|CBA07628.1| putative Hollyday junction resolvase [Neisseria meningitidis
alpha275]
gi|304338602|gb|EFM04720.1| crossover junction endodeoxyribonuclease [Neisseria meningitidis
ATCC 13091]
gi|308389455|gb|ADO31775.1| Holliday junction resolvase-like protein [Neisseria meningitidis
alpha710]
gi|316984140|gb|EFV63118.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325128470|gb|EGC51351.1| hypothetical protein NMXN1568_0820 [Neisseria meningitidis N1568]
gi|325130425|gb|EGC53189.1| hypothetical protein NMBOX9930304_0816 [Neisseria meningitidis
OX99.30304]
gi|325132467|gb|EGC55160.1| hypothetical protein NMBM6190_0869 [Neisseria meningitidis M6190]
gi|325134425|gb|EGC57070.1| hypothetical protein NMBM13399_0866 [Neisseria meningitidis M13399]
gi|325136160|gb|EGC58768.1| hypothetical protein NMBM0579_0893 [Neisseria meningitidis M0579]
gi|325138241|gb|EGC60810.1| hypothetical protein NMBES14902_0966 [Neisseria meningitidis
ES14902]
gi|325140441|gb|EGC62962.1| hypothetical protein NMBCU385_0832 [Neisseria meningitidis CU385]
gi|325198484|gb|ADY93940.1| conserved hypothetical protein [Neisseria meningitidis G2136]
gi|325200040|gb|ADY95495.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325201953|gb|ADY97407.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
gi|325204333|gb|ADY99786.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
Length = 151
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H +R F ++ + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGR-RLNGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|27468217|ref|NP_764854.1| hypothetical protein SE1299 [Staphylococcus epidermidis ATCC 12228]
gi|57867099|ref|YP_188756.1| hypothetical protein SERP1180 [Staphylococcus epidermidis RP62A]
gi|251811023|ref|ZP_04825496.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis BCM-HMP0060]
gi|282875958|ref|ZP_06284825.1| RNAse YqgF [Staphylococcus epidermidis SK135]
gi|293366426|ref|ZP_06613104.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|32130023|sp|Q8CSA9|RUVX_STAES RecName: Full=Putative Holliday junction resolvase
gi|62900904|sp|Q5HNT4|RUVX_STAEQ RecName: Full=Putative Holliday junction resolvase
gi|27315763|gb|AAO04898.1|AE016748_132 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637757|gb|AAW54545.1| conserved hypothetical protein TIGR00250 [Staphylococcus
epidermidis RP62A]
gi|251805441|gb|EES58098.1| crossover junction endodeoxyribonuclease [Staphylococcus
epidermidis BCM-HMP0060]
gi|281294983|gb|EFA87510.1| RNAse YqgF [Staphylococcus epidermidis SK135]
gi|291319460|gb|EFE59828.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329735297|gb|EGG71589.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU045]
gi|329737275|gb|EGG73529.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU028]
Length = 142
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ +D +AA ILQ LD I
Sbjct: 123 KVIDKMAAVFILQGYLDSI 141
>gi|328957194|ref|YP_004374580.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
gi|328673518|gb|AEB29564.1| Holliday junction resolvase-like protein [Carnobacterium sp. 17-4]
Length = 140
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+D+G+K +G+A+SDP A + + + + I + +IG
Sbjct: 1 MRTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINETQEEYGIERIGELIKIHEVTKVVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRI 133
LP NMN S GPR ++ + +I +P + DERLTTV A+++LI+ SR KR
Sbjct: 61 LPKNMNNSIGPRAEASLRYAE-LIKETFNLPVILQDERLTTVQAERMLIEEGNTSRAKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA +ILQ L++
Sbjct: 120 KVIDKVAAVMILQNYLNQ 137
>gi|313674137|ref|YP_004052133.1| holliday junction resolvase yqgf [Marivirga tractuosa DSM 4126]
gi|312940835|gb|ADR20025.1| Holliday junction resolvase YqgF [Marivirga tractuosa DSM 4126]
Length = 137
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID GTKR+GLA++DP + A P + K + Q ++ ++E + A + G
Sbjct: 1 MPRVLAIDYGTKRVGLAVTDPLKIIASPLEMIHSKDLVQYL---ANYFSSEEVEAVVCGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N G AF++ + +P DE ++ A Q +I +RK+R +K
Sbjct: 58 PTNEEGEATDATRHVDAFINLFKKKFPTMPLHLQDESFSSQEAMQAMIHSGSNRKQRNKK 117
Query: 136 ---VDSIAAALILQEVLDR 151
+D I+AA+ILQ+ L+
Sbjct: 118 SGNIDKISAAIILQQFLEE 136
>gi|218768356|ref|YP_002342868.1| Holliday junction resolvase-like protein [Neisseria meningitidis
Z2491]
gi|32130067|sp|Q9JU11|RUVX_NEIMA RecName: Full=Putative Holliday junction resolvase
gi|121052364|emb|CAM08696.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|319410602|emb|CBY90971.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 151
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLATVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H +R F ++ + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGR-RLNGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054]
Length = 157
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A+ DP A P + +Q L + + + ++G
Sbjct: 7 RRGRRIAVDVGDARIGVAVCDPDGLIATPVETVPAGGRSQ--ARLKAIVEEYDAVEVVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++NG EGP R + + V DER+TTV+A L S KK
Sbjct: 65 LPRSLNGKEGPAAAKVREYAGRLAGLLYPVGVRLVDERMTTVTAAAGLRASGRSSKKGRS 124
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D AA +ILQ L+ + G
Sbjct: 125 VIDQAAAVVILQSALETERVSGRAPG 150
>gi|319638570|ref|ZP_07993332.1| Holliday junction resolvase [Neisseria mucosa C102]
gi|317400319|gb|EFV80978.1| Holliday junction resolvase [Neisseria mucosa C102]
Length = 151
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+A + +HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGEARIGVAQGEAELGMSHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + + +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGR-RLHGRFNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202]
gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60]
Length = 140
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT+ IG AI A P ++ + ++GLP
Sbjct: 4 RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGAPDWQQIEKVLREWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P R F + + + V DERL+TV A+ L R +V
Sbjct: 64 LNMDGSEQPLTQMARKFAN-RLHGRFGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122
Query: 137 DSIAAALILQEVLDRISF 154
D+ +AALIL+ + ++
Sbjct: 123 DAASAALILESWFEHQTY 140
>gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K]
gi|226725482|sp|B4UH04|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase
gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K]
Length = 137
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLG RIGLA++D R A +VR+ + + + ++GLP
Sbjct: 1 MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EGP R F ++ + VP +DERL++ A+ L +S +++ +V
Sbjct: 61 LNMDGTEGPSARLARGFA-PRLEAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQV 119
Query: 137 DSIAAALILQEVLDRIS 153
D+ AAA+ILQ LDR +
Sbjct: 120 DAEAAAVILQGWLDRRA 136
>gi|34499365|ref|NP_903580.1| Holliday junction resolvase-like protein [Chromobacterium violaceum
ATCC 12472]
gi|62901005|sp|Q7NR74|RUVX_CHRVO RecName: Full=Putative Holliday junction resolvase
gi|34105215|gb|AAQ61571.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 137
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G +RIG+A+ D HP + + + I ++GLP++
Sbjct: 1 MAFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHP 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDS 138
+G E +R F + + + +P DER T+V A+Q+L + V + +K+ +D
Sbjct: 61 DGEEHELSALSRRFAN-RLKGRFGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQ 119
Query: 139 IAAALILQEVLDR 151
+AA IL ++
Sbjct: 120 VAAQAILAGWFEQ 132
>gi|119470543|ref|ZP_01613246.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
TW-7]
gi|119446244|gb|EAW27521.1| Holliday junction resolvase-like protein [Alteromonadales bacterium
TW-7]
Length = 149
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+A+ A + + + + ++GLP
Sbjct: 12 RTVMGFDFGTKSIGIAVGQELTGSASSLKAVKAQDGIPNWDHIAVQVNEWQPDLMVVGLP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+ + F + + +P DERLTT A+ L + + V
Sbjct: 72 LNMDGTSQEVTFKAKKFAN-RLHNHYGIPVQTQDERLTTADAKARLFEQGGYKNLGKGNV 130
Query: 137 DSIAAALILQEVLDR 151
D+++A +IL+ +
Sbjct: 131 DNMSAVIILESFFES 145
>gi|281420285|ref|ZP_06251284.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
gi|281405587|gb|EFB36267.1| putative Holliday junction resolvase [Prevotella copri DSM 18205]
Length = 137
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I SID G KR GLA++DP + A+ + ++ ++I E + +IG P
Sbjct: 1 MRILSIDYGKKRTGLAVTDPLQIIANGLATVSTHELFTYIE---TYIQKEQVERIVIGKP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK- 135
+ NG + F + +P ++DER T+V A + +ID V +K R +
Sbjct: 58 MQPNGQPSENLARVENFYNRWRKAHPEIPIEYYDERFTSVLAHRAMIDGGVKKKVRKENK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ+ L
Sbjct: 118 GLVDEISATIILQDYLQSRR 137
>gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
Length = 142
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GTK IGLAI A P + T ++ + ++GL
Sbjct: 3 NRTVFAFDFGTKSIGLAIGQEVTGTARPLTSFKAQDGTPDWQKIEKLLKEWLPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + V DERL+TV A+ L D R
Sbjct: 63 PLNMDGTEQPLTARARKFAN-RLHGRFGVQVELHDERLSTVEARADLFDRGGFRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEK 137
>gi|300770445|ref|ZP_07080324.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762921|gb|EFK59738.1| Holliday junction resolvase family protein [Sphingobacterium
spiritivorum ATCC 33861]
Length = 138
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTKRIG+A++DP + A+ + + L +++ TE + F++G P
Sbjct: 1 MRLMAFDYGTKRIGIAVTDPLQIVANALTTVH---PDEIVDFLKNYLQTEQVETFVVGKP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
M+GS+ F+ + + +P DER T+ A ++ + + KR
Sbjct: 58 RQMDGSDSESASHVIGFIRLLKKQFPAIPVAEVDERFTSKMASAVIAQSGMKKGKRQQKG 117
Query: 135 KVDSIAAALILQEVLDRISFL 155
VD+I+A +ILQ +D SFL
Sbjct: 118 LVDTISATIILQSYMDSRSFL 138
>gi|254447654|ref|ZP_05061120.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
HTCC5015]
gi|198262997|gb|EDY87276.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
HTCC5015]
Length = 141
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ID G KRIG+A A P L L + A ++GL
Sbjct: 1 MNTLLGIDFGLKRIGIATGQTLTCSATPLTTLPNHAEHTNWDGLDKVLKDWKPDAIVLGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----NVSRKK 131
PLN +GS+ R F + + + P + DER ++ A+Q L ++ RK
Sbjct: 61 PLNKDGSDHALTKQVRQF-RDTLGQHFSGPIHWQDERASSREAEQSLTSQRASGDLRRKV 119
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
+ + +D +AAALILQ L++
Sbjct: 120 KKEDIDQLAAALILQRWLNKTP 141
>gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 141
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GT IG A+ A + E+ + ++GLP
Sbjct: 7 KTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIPNWEEIGKLLQDWKPDMLVVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P R F + ++ + +P DERLTTV A+ + + + KV
Sbjct: 67 LNMDGTEQPLTQRARKFAN-RLNGRFNLPVELQDERLTTVEAKAEIFSRGGYKALKKDKV 125
Query: 137 DSIAAALILQEVLDR 151
DSI+A LIL+ +
Sbjct: 126 DSISACLILESWFEN 140
>gi|304382926|ref|ZP_07365408.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
gi|304335951|gb|EFM02199.1| Holliday junction resolvase [Prevotella marshii DSM 16973]
Length = 140
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G KR GLA++DP + + ++ + +++ E + +IG P
Sbjct: 5 RILSIDYGKKRTGLAVTDPLQMICGGLATVPTSELFKFL---QTYMEKEPVERIVIGEPK 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
NG + + FV+ +VP F+DER T++ A + ++D + +K R K
Sbjct: 62 QPNGMPSENMARVQQFVNRWRKAVPHVPIEFYDERFTSLLAHKAMLDGGLKKKARRDKAL 121
Query: 136 VDSIAAALILQEVLDRIS 153
VD I+A +ILQ L+ I
Sbjct: 122 VDEISATIILQSYLESIR 139
>gi|187922872|ref|YP_001894514.1| Holliday junction resolvase-like protein [Burkholderia phytofirmans
PsJN]
gi|226725498|sp|B2T0I5|RUVX_BURPP RecName: Full=Putative Holliday junction resolvase
gi|187714066|gb|ACD15290.1| Holliday junction resolvase YqgF [Burkholderia phytofirmans PsJN]
Length = 146
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRRARPLVIVQNRSREYRFEAVGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+ + F + ++ + +P + DER ++V A+ + N R
Sbjct: 67 LPFHPDGAPHEMTQLAKRFGN-QLNGRFNLPVTWVDERYSSVEAKAEIRAGNG----RAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140
>gi|325270162|ref|ZP_08136769.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
gi|324987463|gb|EGC19439.1| Holliday junction resolvase [Prevotella multiformis DSM 16608]
Length = 139
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + +I E + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDFLT---QYIAEEPVDRLVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ +G + FV+ +P ++DER T+V A Q LI V +K R
Sbjct: 58 PVQPSGEPSENLVRVEQFVNRWRKAHPELPIDYYDERFTSVLAHQALIAGGVKKKTRREN 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str.
Malish 7]
gi|32130054|sp|Q92IG5|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase
gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7]
Length = 154
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN P+ +ID G K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNVPLIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + IIGLP++M+G+ + + F + + + +P DERLTT +A
Sbjct: 61 NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAE-ELAKSINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+L V RK R D++AA++IL+ VLD I +
Sbjct: 120 LLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI 154
>gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
gi|167012756|sp|A8EZB2|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase
gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
Length = 154
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN + +ID G+K++G+A+S+ R A P + T +L
Sbjct: 1 MIIKNLQEFYRLLIPNTQLIAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S I I +IGLP++M+G + + F + + +P DERLTT +A
Sbjct: 61 SIIAKYKICGVVIGLPIDMSGVVTQQTNIVMKFAE-ELAKYTNLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L V RK R D++AA++IL+ VLD I
Sbjct: 120 FLKSFGVKRKDRNNNDDAVAASMILETVLDSI 151
>gi|88859063|ref|ZP_01133704.1| Holliday junction resolvase-like protein [Pseudoalteromonas
tunicata D2]
gi|88819289|gb|EAR29103.1| Holliday junction resolvase-like protein [Pseudoalteromonas
tunicata D2]
Length = 149
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GT+ IG+A+ A P + + E+ + + ++GLP
Sbjct: 12 RTVLGFDFGTRSIGIAVGQEITGSASPLKAINARDGIPNWDEIAAIVNEWQPDLLVVGLP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+ + F + + +P DERLTT A+ L +K V
Sbjct: 72 LNMDGTNQEVTFQAKKFAN-RLHNNYGLPVETQDERLTTADAKSQLFAQGGFKKLTKGNV 130
Query: 137 DSIAAALILQEVLDR 151
DS++A LIL+ +
Sbjct: 131 DSMSALLILESYFEN 145
>gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 140
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG AI A P + + ++ + ++GL
Sbjct: 3 NRTIIAFDFGTKSIGAAIGQEVTGTARPLASFKANEGSPDWSKIEKMLKEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + I + V DERL+TV A+ L R
Sbjct: 63 PLNMDGTEQPVTAQARKFAN-RIHGRFGVQVALHDERLSTVEARAHLFAGGGYRALDKGS 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +A +IL+ ++
Sbjct: 122 VDAASAVIILESWFEQ 137
>gi|220917826|ref|YP_002493130.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-1]
gi|254767492|sp|B8JDZ9|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase
gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-1]
Length = 137
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLG RIGLA++D R A +VR+ + + + ++GLP
Sbjct: 1 MRTLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+EGP R F ++ + VP +DERL++ A+ L +S +++ +V
Sbjct: 61 LNMDGTEGPSARLARGFA-PRLEAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQV 119
Query: 137 DSIAAALILQEVLDRIS 153
D+ AAA+ILQ LDR +
Sbjct: 120 DAEAAAVILQGWLDRRA 136
>gi|300811591|ref|ZP_07092075.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|313124258|ref|YP_004034517.1| holliday junction resolvase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|300497451|gb|EFK32489.1| RNAse YqgF [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|312280821|gb|ADQ61540.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325126221|gb|ADY85551.1| Putative Holliday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325685731|gb|EGD27809.1| crossover junction endodeoxyribonuclease [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 142
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K IG+A+SDP A + + L + F++G
Sbjct: 1 MRLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEADGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+G+ G V ++A +++K +P + DERLTTV++++IL+ + + R++R
Sbjct: 61 LPKNMDGTAGRSVSRSKAMGE-RLEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ VD +AA LILQ LD
Sbjct: 120 KEVVDQMAAVLILQNYLD 137
>gi|254495884|ref|ZP_05108793.1| YqgF [Legionella drancourtii LLAP12]
gi|254354866|gb|EET13492.1| YqgF [Legionella drancourtii LLAP12]
Length = 138
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ D G KRIG+A+ A P + + + + A I+G
Sbjct: 2 PDGVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+P ++G E + R F + ++ +P DERLTTV A+ L RK +
Sbjct: 62 IPTCIDGREQYTTSAARRFAK-ELRKRFTLPVHLVDERLTTVEARGHLFAQGGYRKIKQT 120
Query: 135 KVDSIAAALILQEVLDR 151
+VDSIAA +IL++ L
Sbjct: 121 EVDSIAACVILEQWLQY 137
>gi|255529990|ref|YP_003090362.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
gi|255342974|gb|ACU02300.1| Holliday junction resolvase YqgF [Pedobacter heparinus DSM 2366]
Length = 138
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D GTKRIG+A++DP + A + K + + ++ E + AF+ G
Sbjct: 1 MPRILAFDYGTKRIGIAVTDPLQIIATGLDTIHPKDIVEYL---KKYLLAEQVEAFVFGD 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR--KKRI 133
P M+G+ + F + +P + DER T+ A Q ++ + + +K
Sbjct: 58 PKQMDGTPSESAQHVKGFAKTLKKTFPDIPQYWIDERFTSKLAHQAIMQSGLKKQDRKNK 117
Query: 134 QKVDSIAAALILQEVLDR 151
++VD+I+A +ILQ +++
Sbjct: 118 ERVDTISATIILQYFMEQ 135
>gi|149280102|ref|ZP_01886226.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
gi|149229116|gb|EDM34511.1| Holliday junction resolvase-like protein [Pedobacter sp. BAL39]
Length = 138
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D GTKR+G+A++DP + A + K + + ++ TE + AF+IG
Sbjct: 1 MPRILAFDYGTKRVGIAVTDPLQIIATGLDNVHPKDIIEYL---KKYLLTEQVEAFVIGD 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+GS + F + +P + DER T+ A Q ++ + ++ R K
Sbjct: 58 PKQMDGSPSESAQHIKGFARTLKKTFPDIPQFWVDERFTSKLAHQTILQSGLKKQDRKDK 117
Query: 136 --VDSIAAALILQEVLDR 151
VD+IAA +ILQ +++
Sbjct: 118 SRVDTIAATIILQYFMEQ 135
>gi|325851999|ref|ZP_08171082.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
18C-A]
gi|325484555|gb|EGC87471.1| RNAse H domain protein, YqgF family [Prevotella denticola CRIS
18C-A]
Length = 139
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + +I TE + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDFLT---QYIETETVERLVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ +G + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|327312426|ref|YP_004327863.1| RNAse H domain-containing protein, YqgF family [Prevotella
denticola F0289]
gi|326944800|gb|AEA20685.1| RNAse H domain protein, YqgF family [Prevotella denticola F0289]
Length = 139
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R A+ + + +I TE + +IG
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRIIANGLATVATSGLFDFLT---QYIGTETVEQLVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ +G + FV+ +P ++DER T+V A Q +I V +K R
Sbjct: 58 PVQPDGRPSENLGRVEQFVNRWRKAHPELPVDYYDERFTSVIAHQAMIAGGVKKKTRREN 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDYM 134
>gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
Length = 160
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
+ +L+ + + IDLGTK IGLAISD + P + R K T +L F T
Sbjct: 8 ELAQFADALQGSGRLLGIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFAT 67
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
E ++ +IGLPLNM+GSEGPR S+RAF + R +P WDE L+T A + +
Sbjct: 68 AERVSGIVIGLPLNMDGSEGPRAQSSRAFAR-NLSRLTELPIQLWDESLSTSEALEGVSA 126
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
++ K K+D++AA+LILQ D + L
Sbjct: 127 KKAAQMKADGKLDALAASLILQGCCDAMRAL 157
>gi|268608523|ref|ZP_06142250.1| Holliday junction resolvase YqgF [Ruminococcus flavefaciens FD-1]
Length = 143
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+D G R G+A+ A P + K + + + + ++G P N
Sbjct: 3 IMSVDFGDARTGIAVCGKSEMIASPVTVIPEKDFDKCIEKTAALAKEQRAEQIVVGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R F ++ +P WDER TTVSA L N KKR VD+
Sbjct: 63 MNGTIGERCEKCTLFAE-KLEEMTGIPTRLWDERCTTVSAHNYLNVTNTRGKKRKNVVDA 121
Query: 139 IAAALILQEVLDRI 152
+AA +IL+ L+
Sbjct: 122 VAAVIILESYLEYR 135
>gi|118597218|sp|Q6MD02|RUVX_PARUW RecName: Full=Putative Holliday junction resolvase
Length = 150
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-------LELLSF 62
+++ I ID G RIGLA SD + A P + +K ++ + L
Sbjct: 1 MENKPKPSRILGIDFGMSRIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCE 60
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
I +IGLPL M+G G + F ++ + +P WDERLTTV A++ L
Sbjct: 61 TQKCEIEEIVIGLPLMMSGRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSL 119
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+ ++RKKR + VD ++A++ILQ LD
Sbjct: 120 RESQLTRKKRSKVVDIVSASIILQSYLDSR 149
>gi|169350060|ref|ZP_02866998.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
gi|169293273|gb|EDS75406.1| hypothetical protein CLOSPI_00800 [Clostridium spiroforme DSM 1552]
Length = 139
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
+ I +DLG++ G+A+SD AH Q A ++ I I ++
Sbjct: 1 MEKILGLDLGSRTCGIAMSDALGMLAHGLETYRFNDGNYKQAANYVVEIINKNQIKTVVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F + + + V DERLTT AQ LI +VSRKKR
Sbjct: 61 GLPKHMNGDLGERAQISIMFKEMLEKKVAGLNVVLVDERLTTKVAQDRLIFADVSRKKRK 120
Query: 134 QKVDSIAAALILQEVLD 150
Q +D +AA ILQ LD
Sbjct: 121 QVIDKMAAVAILQGYLD 137
>gi|161870210|ref|YP_001599380.1| Holliday junction resolvase-like protein [Neisseria meningitidis
053442]
gi|189046101|sp|A9LZR5|RUVX_NEIM0 RecName: Full=Putative Holliday junction resolvase
gi|161595763|gb|ABX73423.1| Putative Holliday junction resolvase [Neisseria meningitidis
053442]
Length = 151
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGETRIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H +R F ++ + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSRKFGR-RLNGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|116514509|ref|YP_813415.1| Holliday junction resolvase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|122274759|sp|Q048Z5|RUVX_LACDB RecName: Full=Putative Holliday junction resolvase
gi|116093824|gb|ABJ58977.1| RNase H-like ribonuclease [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 142
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K IG+A+SDP A + + L + F++G
Sbjct: 1 MRLLGLDVGSKTIGVAVSDPLGITAQAVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+G+ G V ++A +++K +P + DERLTTV++++IL+ + + R++R
Sbjct: 61 LPKNMDGTAGRSVSRSKAMGE-RLEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ VD +AA LILQ LD
Sbjct: 120 KEVVDQMAAVLILQNYLD 137
>gi|190149502|ref|YP_001968027.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307262821|ref|ZP_07544446.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|226725478|sp|B3H073|RUVX_ACTP7 RecName: Full=Putative Holliday junction resolvase
gi|189914633|gb|ACE60885.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306871836|gb|EFN03555.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 137
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + ++ + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFAN-RLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium
atrosepticum SCRI1043]
gi|62900970|sp|Q6D075|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase
gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 139
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ + + D GTK IG+AI A ++ ++ ++ ++G
Sbjct: 2 SNRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E P R F + + + V DERL+TV A+ L + +
Sbjct: 62 LPLNMDGTEQPLTARARKFAN-RLHGRFGVAIELHDERLSTVEARADLFERGGFKALDKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 SVDAASAVIILESWFE 136
>gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX9]
Length = 143
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G RIG+A++DP A P L RK + A LL I + ++G P
Sbjct: 4 GRIMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR-KKRIQK 135
L+++G P F + +R +P WDERL++V+A +IL + +R K R
Sbjct: 64 LHLSGDLSPFAAKVHEFAEYLRER-TEIPIQLWDERLSSVAANEILDEAGHARGKDRKFI 122
Query: 136 VDSIAAALILQEVL 149
+D +AA LIL+ +
Sbjct: 123 IDQVAAVLILEGWM 136
>gi|238918247|ref|YP_002931761.1| hypothetical protein NT01EI_0284 [Edwardsiella ictaluri 93-146]
gi|259495703|sp|C5BCS0|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase
gi|238867815|gb|ACR67526.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 140
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT+ IG AI A P ++ + ++GLP
Sbjct: 4 RTILAFDFGTRSIGCAIGQELTGSARPLQSFKANDGVPDWQQIEKVLREWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P R F + + + V DERL+TV A+ L R +V
Sbjct: 64 LNMDGSEQPLTQQARKFAN-RLHGRFGVQIALQDERLSTVEARAHLFAGGGYRALEKGRV 122
Query: 137 DSIAAALILQEVLDR 151
D+ +AALIL+ +
Sbjct: 123 DAASAALILESWFEN 137
>gi|104774411|ref|YP_619391.1| putative Hollyday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|118597212|sp|Q1G949|RUVX_LACDA RecName: Full=Putative Holliday junction resolvase
gi|103423492|emb|CAI98394.1| Putative Hollyday junction resolvase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 142
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K IG+A+SDP A + + L + F++G
Sbjct: 1 MRLLGLDVGSKTIGVAVSDPLGITAQSVMTIPIDEDRHNFGMRSLKKLVREYEANGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+G+ G V ++A +++K +P + DERLTTV++++IL+ + + R++R
Sbjct: 61 LPKNMDGTAGRSVSRSKAMGE-RLEQKFGLPVYYDDERLTTVASERILVEEAGMHDRRQR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ VD +AA LILQ LD
Sbjct: 120 KEVVDQMAAVLILQNYLD 137
>gi|221195852|ref|ZP_03568905.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
gi|221184326|gb|EEE16720.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
Length = 140
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G R+G+A+SDP R A P L ++V A S + + G P
Sbjct: 1 MRVLALDIGDARVGIAVSDPDGRIASPVCVLPAQEVFSHARSFRSVLEDWEPELLVCGKP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L ++G EGP+ + DR +P DERL++ A++IL +S K KV
Sbjct: 61 LTLSGEEGPQAQKIMEQAKKIADR-TGLPVELTDERLSSSEAKRILRAQGLSEKTMRGKV 119
Query: 137 DSIAAALILQEVLDR 151
D +AA+L LQ LDR
Sbjct: 120 DMVAASLFLQAWLDR 134
>gi|167563836|ref|ZP_02356752.1| Holliday junction resolvase-like protein [Burkholderia oklahomensis
EO147]
Length = 146
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+A+ + R A + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAVGNMLTRTARALVIVPNLNREHRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ + F + M R +P + DER ++V A+ L S
Sbjct: 63 LVVGLPLHPDGAPHEMTQQAKRFGNQMNGR-FNLPVSWVDERYSSVEARADLRARG-SGA 120
Query: 131 KRIQKVDSIAAALILQEVLDRISFLES 157
R VD+ AA +ILQ+ LD +
Sbjct: 121 DR---VDAEAARIILQQYLDELPDHHE 144
>gi|325298806|ref|YP_004258723.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
gi|324318359|gb|ADY36250.1| Holliday junction resolvase [Bacteroides salanitronis DSM 18170]
Length = 139
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A + ++ L ++ E + IIG
Sbjct: 1 MSRILAIDYGKKRTGIAVTDPMQVIASGLTTVPTHQLMDFLL---GYVRQEAVERIIIGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + F++ + + +P +DER T+V A Q ++ + +K R
Sbjct: 58 PKQMNNEDSENMKRIVPFMNQLKKKLPDMPVELYDERFTSVLAHQAMLAGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ L
Sbjct: 118 ALVDEISATIILQSYLEAKRGL 139
>gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
Length = 183
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR----KKVTQTALELLSFITTENIAAF 71
I ++D G KR+GLAISDPGR A P L R T L + +
Sbjct: 1 MGTILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRL 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP++ +G + P+ + R + + +++ + ++ DER +T A +++ + +S K
Sbjct: 61 VMGLPVHTSGRDSPQARAARQWGDRV-AKELGLTIIYVDERYSTKHADELMREAGLSAAK 119
Query: 132 RIQKVDSIAAALILQEVLD 150
R ++VDS+AA +IL++ LD
Sbjct: 120 RKRRVDSLAAVVILRDYLD 138
>gi|146305439|ref|YP_001185904.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
ymp]
gi|145573640|gb|ABP83172.1| Holliday junction resolvase YqgF [Pseudomonas mendocina ymp]
Length = 144
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D GTK+IG+A+ A L + + + I A ++
Sbjct: 4 KPVRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWNRVEALIKEWQPDAVVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+ F ++ +P DERLTT A+ + S R
Sbjct: 64 GLPLNMDGTPSEMSARAEKFAR-RLNGHFNLPAYTHDERLTTFEAKGQRLREGQSGGYRE 122
Query: 134 QKVDSIAAALILQEVLDR 151
+ VD+IAAAL+LQ L+
Sbjct: 123 RPVDAIAAALLLQGWLEE 140
>gi|32034409|ref|ZP_00134591.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126207719|ref|YP_001052944.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae L20]
gi|165975691|ref|YP_001651284.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303251647|ref|ZP_07337820.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252798|ref|ZP_07338958.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245044|ref|ZP_07527138.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247216|ref|ZP_07529266.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251761|ref|ZP_07533664.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253998|ref|ZP_07535846.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258453|ref|ZP_07540191.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260688|ref|ZP_07542378.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|167012686|sp|A3MYV3|RUVX_ACTP2 RecName: Full=Putative Holliday junction resolvase
gi|226725479|sp|B0BSN8|RUVX_ACTPJ RecName: Full=Putative Holliday junction resolvase
gi|126096511|gb|ABN73339.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875792|gb|ABY68840.1| putative Holliday junction resolvase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|302648359|gb|EFL78555.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649489|gb|EFL79672.1| Holliday junction resolvase-like protein [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306854032|gb|EFM86243.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856274|gb|EFM88427.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860762|gb|EFM92772.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863024|gb|EFM94970.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867458|gb|EFM99308.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869609|gb|EFN01396.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 137
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P + F + ++ + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGSEQPLTQRAKKFAN-RLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|229593127|ref|YP_002875246.1| Holliday junction resolvase-like protein [Pseudomonas fluorescens
SBW25]
gi|312963615|ref|ZP_07778096.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
gi|259495710|sp|C3K3K0|RUVX_PSEFS RecName: Full=Putative Holliday junction resolvase
gi|229364993|emb|CAY53130.1| putative holliday junction resolvase [Pseudomonas fluorescens
SBW25]
gi|311282124|gb|EFQ60724.1| putative Holliday junction resolvase [Pseudomonas fluorescens WH6]
Length = 145
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 6 ILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGIPDWNQVEALIKEWKPDAVVVGLPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV-SRKKRIQKVD 137
M+G+ F ++ + +PF DERLTT A+ D R VD
Sbjct: 66 MDGTPSDMCLRAEKFAR-RLNGRYNIPFYTHDERLTTFEAKGERRDRGGQKGSYRDNPVD 124
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD + L
Sbjct: 125 AIAAALLLQGWLDENTAL 142
>gi|300726437|ref|ZP_07059885.1| conserved hypothetical protein [Prevotella bryantii B14]
gi|299776285|gb|EFI72847.1| conserved hypothetical protein [Prevotella bryantii B14]
Length = 139
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++DP + A+ + + ++ E + I+G
Sbjct: 1 MGRILSIDYGKKRTGLAVTDPMQIIANGLTTVSTVDLWDFL---QNYCKKEGVERIIMGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P NG + F + +P ++DER T+V A + +ID V +K R
Sbjct: 58 PTQPNGLPSENMGRVENFYNRWHKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRREN 117
Query: 133 IQKVDSIAAALILQEVLDRISF 154
VD ++A +IL++ + +
Sbjct: 118 KGLVDEVSATIILEDWMSSHRY 139
>gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola DSM
20162]
Length = 161
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D+G RIG+A+SDP A P + + + +T +IGL
Sbjct: 9 RGRRLALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYEPVEIVIGL 68
Query: 76 PLNMNGSEGPRVHSTRAFVHN-----MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
P + G G F + F DER TTV+AQ+ L D V K
Sbjct: 69 PRTLRGDRGESARMAEGFAARLATVLDATDQPSPRVCFSDERFTTVTAQRALRDNGVRAK 128
Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
++ +D AA ILQ LD
Sbjct: 129 EQRAVIDQAAAVAILQGWLDERR 151
>gi|313897358|ref|ZP_07830901.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
gi|312957728|gb|EFR39353.1| RNAse H domain protein, YqgF family [Clostridium sp. HGF2]
Length = 137
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFIIG 74
I +DLG+K +G+++SD A P + + ++ +I + ++G
Sbjct: 1 MRILGLDLGSKTLGVSVSDALGMIARPVETIRFESDDYEAACKQVQPYIKEFQVKTAVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +MNG G R + F + + + V WDERLTTV+A++ILI +VSRKKR +
Sbjct: 61 LPKHMNGDVGIRGEISLMFKEKL--EALGLEVVLWDERLTTVAAEKILISADVSRKKRKK 118
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ LD
Sbjct: 119 IIDQMAAVQILQSYLDS 135
>gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
Length = 159
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ IA ID GT RIG+AI+DP R A P R+ + E I F+
Sbjct: 9 IPTVGRIAGIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKLERIVLFV 68
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP++M+G+E + R F + R VP V++DER TT A+ L + ++++K+
Sbjct: 69 VGLPVHMSGNESGKSGEARKFGQW-LGRITGVPIVYYDERFTTSIAKDYLAGLGMTKQKK 127
Query: 133 IQKVDSIAAALILQEVLDR 151
+D +AA ++L L+
Sbjct: 128 KAVIDKLAAQILLTAYLEN 146
>gi|126657653|ref|ZP_01728808.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
gi|126621109|gb|EAZ91823.1| Holliday junction resolvase-like protein [Cyanothece sp. CCY0110]
Length = 143
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I +D+G KRIG+A D A + R+ Q +L + +T +I
Sbjct: 1 MERISALGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLQTLVTEREAQLLVI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +M+GS G + + F I + + +P + DERLT+V A+ L +
Sbjct: 61 GLPYSMDGSIGFQAKQVQKFAK-RISKALELPVEYIDERLTSVEAETKLKAQKKYSRHNK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD +AA +ILQ+ LD+
Sbjct: 120 GLVDRLAATIILQQWLDQRR 139
>gi|91782034|ref|YP_557240.1| Holliday junction resolvase-like protein [Burkholderia xenovorans
LB400]
gi|296160318|ref|ZP_06843136.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
gi|118597203|sp|Q144Q1|RUVX_BURXL RecName: Full=Putative Holliday junction resolvase
gi|91685988|gb|ABE29188.1| Conserved hypothetical protein 250 [Burkholderia xenovorans LB400]
gi|295889529|gb|EFG69329.1| Holliday junction resolvase YqgF [Burkholderia sp. Ch1-1]
Length = 146
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + + A P + + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTKSARPLVIVQNRSREYRFEAVGKLIAEWKPNALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ + N R
Sbjct: 67 LPMHPDGTPHEMTQLAKRFGN-QLNGRFNLPVTWIDERYSSVEAKAEIRAGNG----RAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD +S
Sbjct: 122 MLDAEAASIILQQYLDGLS 140
>gi|209518623|ref|ZP_03267441.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
gi|209500906|gb|EEA00944.1| Holliday junction resolvase YqgF [Burkholderia sp. H160]
Length = 146
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A P + + L I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNSLTRRARPLVVVQNRSKEYRFEALGKLIAEWKPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ R + F + ++ + +P + DER ++V A+ + N R
Sbjct: 67 LPMHPDGTPHERTQLAKRFGN-QLNGRFNLPVTWVDERYSSVEAEAEIRAGN----ARAD 121
Query: 135 KVDSIAAALILQEVLDRIS 153
+D+ AA++ILQ+ LD ++
Sbjct: 122 MLDAEAASIILQQYLDGLT 140
>gi|257870135|ref|ZP_05649788.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804299|gb|EEV33121.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 140
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G++ +G+A+SDP A + + L + + F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDPMGWTAQGIEIIRINEDENDFGYDRLGELVKEYEVTRFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN + GPR ++ A+ I+ + +P + DERLTTV A+++L++ N SR KR + +
Sbjct: 61 NMNNTIGPRAEASLAYGK-AIEERFDLPVDYQDERLTTVQAERMLVEQANTSRAKRKKVI 119
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 120 DKLAAVMILQNYLD 133
>gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera sp. 301]
Length = 164
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ D G +RIG+A+ + A+P + + + + I+GLP
Sbjct: 30 STVLCFDFGEQRIGVAVGEHLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLP 89
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+++G+E + F ++ + +P V DER ++V A +L + + + + +
Sbjct: 90 LSLDGAETSVTQLCKKFAR-RLNGRFNLPVVLIDERYSSVEASDLLNQSGIKGRAQKEML 148
Query: 137 DSIAAALILQEVL 149
D +AA ILQ
Sbjct: 149 DQVAAQTILQSYF 161
>gi|224023748|ref|ZP_03642114.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
gi|224016970|gb|EEF74982.1| hypothetical protein BACCOPRO_00464 [Bacteroides coprophilus DSM
18228]
Length = 142
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A+ + ++ L ++T E++ I+G
Sbjct: 1 MSRIIAIDYGRKRTGIAVTDPMQIIANGLTTVPTHQLMDFLL---KYVTQESVERIIVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + + + F++ + + +P DER T+V A Q ++ + +K R
Sbjct: 58 PKQMNNEDSENMKNIIPFINQLKKKLPKIPVELVDERFTSVLAHQAMLAGGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ L+ +
Sbjct: 118 ALVDEISATIILQSYLEGKRNM 139
>gi|289643075|ref|ZP_06475206.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
glomerata]
gi|289507119|gb|EFD28087.1| Holliday junction resolvase YqgF [Frankia symbiont of Datisca
glomerata]
Length = 164
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
ID+GT RIG+A SDP R A P L R ++ E+ + + ++GLP
Sbjct: 9 VGIDVGTVRIGVAASDPDARIAFPVTTLRRGTRLNSDLDEIAMIVRDRHAVEVVVGLPTR 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G GP R + + R VP DERLTTV A + + + + + R VD
Sbjct: 69 LSGLPGPAARKAREYADLLAARVAPVPVRLVDERLTTVVAHRRMAERGLRARDRRAVVDQ 128
Query: 139 IAAALILQEVLD 150
AA ILQ LD
Sbjct: 129 EAAVQILQSALD 140
>gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae
WPP163]
gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163]
Length = 139
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GTK IG+AI A ++ ++ ++ ++GL
Sbjct: 3 NRTLLAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + V DERL+TV A+ L + +
Sbjct: 63 PLNMDGTEQPLTARARKFAN-RLHGRFGVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 122 VDAASAVIILESWFE 136
>gi|116333831|ref|YP_795358.1| Holliday junction resolvase-like protein [Lactobacillus brevis ATCC
367]
gi|122269482|sp|Q03R45|RUVX_LACBA RecName: Full=Putative Holliday junction resolvase
gi|116099178|gb|ABJ64327.1| RNase H-like ribonuclease [Lactobacillus brevis ATCC 367]
Length = 145
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G++ +G+A+SD A + + + + I + ++ F++G
Sbjct: 1 MKLMGLDVGSRTVGVAVSDALGWTAQGVEIIRINEDEEQFGLDRVGELIASHDVQGFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR +++ + + + +P F DERLTTV A+++L++ + SR+KR
Sbjct: 61 LPKNMNNSLGPRAEASKRYGDM-LTARFNLPVDFEDERLTTVEAERMLVEQADTSRRKRK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESSK 159
Q +D +AA LILQ LDR L K
Sbjct: 120 QVIDKLAAGLILQNYLDRHGKLTREK 145
>gi|257784263|ref|YP_003179480.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
gi|257472770|gb|ACV50889.1| Holliday junction resolvase YqgF [Atopobium parvulum DSM 20469]
Length = 140
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A+SDP A P L ++V A + + + G P
Sbjct: 1 MRVLALDIGEVRIGVAVSDPDGAIASPVCVLPAQEVLSHARTFKTVLEDWEPELLLCGRP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G +GP+ I + +P F DERL++ A++IL +S K KV
Sbjct: 61 KTLAGEDGPQAQKITVQAE-QIAKNCQLPLEFTDERLSSAEAKKILRAQGLSEKAMRGKV 119
Query: 137 DSIAAALILQEVLD 150
D +AA+L LQ LD
Sbjct: 120 DMVAASLFLQSWLD 133
>gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
Length = 139
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +DLG K IG+A+SDP A + RKK + +L+ I + + IIGL
Sbjct: 1 MSRIMGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP+ +FV ++ + + + DER+TT+ + Q+L+DMNV+ K R +
Sbjct: 61 PKNMNNTLGPQAMKVISFVD-LLKKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKY 119
Query: 136 VDSIAAALILQEVLDRISF 154
VD IAA+ ILQ LD +
Sbjct: 120 VDKIAASFILQTYLDGRNN 138
>gi|315641319|ref|ZP_07896395.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
gi|315482892|gb|EFU73412.1| crossover junction endodeoxyribonuclease [Enterococcus italicus DSM
15952]
Length = 145
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+G++ +G+A+SDP A + + + I F++G
Sbjct: 1 MRIMGLDVGSRTVGIAVSDPMGWTAQGIEIIKINEDEDNFGFDRVKELADQYEIGHFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN + GPR ++ ++ +++ +P + DERLTTV A+++LI+ N SR KR
Sbjct: 61 LPKNMNNTIGPRAEASMSYGE-KLEQLFGLPVSYQDERLTTVQAERMLIEQANASRAKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ +D +AA +ILQ LD
Sbjct: 120 KVIDKLAAVMILQNFLD 136
>gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
Length = 146
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G K IG+A+SDP A L R + + +L + +IGLP
Sbjct: 1 MRILALDVGDKTIGVAVSDPFGLTAQGLKVLHRGEEAEDVQHVLELARRYEVEEVVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G GP+ F + + + ++WDER TT A+++L+ +VSRKKR +
Sbjct: 61 RTLAGEIGPQAQKVLRFGE--LLAQQGLKIIYWDERFTTKEAEKVLLAADVSRKKRRRVK 118
Query: 137 DSIAAALILQEVLDRIS 153
D +AA L+L+ L++
Sbjct: 119 DILAAVLLLEAYLEKRR 135
>gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp.
Fw109-5]
gi|167012689|sp|A7HDE0|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase
gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5]
Length = 137
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLG RIGLA++D R A P + + + + + + ++GLP
Sbjct: 1 MRYLGLDLGRARIGLALADDVLRTARPLSVVRHRTREADLASIAATLREWEVGTAVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSEG RAF + R VP +DERL+T A+ L + S ++ +V
Sbjct: 61 LNMDGSEGASARYARAFAE-ELARATGVPVELFDERLSTFEAESRLREQGFSARELRGRV 119
Query: 137 DSIAAALILQEVLD 150
D+ AAA+ILQ LD
Sbjct: 120 DAEAAAVILQGWLD 133
>gi|325981453|ref|YP_004293855.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
gi|325530972|gb|ADZ25693.1| Holliday junction resolvase YqgF [Nitrosomonas sp. AL212]
Length = 161
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I + D G KR+G+AI + AHP + + + + + I T F++G+P
Sbjct: 21 GSILAFDFGKKRVGVAIGNTALGVAHPLITIDSEVTNKRFVMIAQLIDTWQPVLFVVGMP 80
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ +G ++ F + + +P V DER T+ A IL + V +++ +
Sbjct: 81 LHSDGIVHELTQLSQRFAR-RLAGRFNIPVVMQDERYTSQIASTILREAGVVGREQKSVL 139
Query: 137 DSIAAALILQEVLDR 151
D IAA ILQ D
Sbjct: 140 DQIAAQQILQSFFDE 154
>gi|300723963|ref|YP_003713277.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
19061]
gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
19061]
Length = 139
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GT+ IG AI A + + + + I+G
Sbjct: 2 KNRTIIAFDFGTRSIGAAIGQEVTGTARALSAFKANEGSPNWQLIEKLLKEWQPDLVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E P R F + + + V DERLTTV A+ L D +
Sbjct: 62 LPLNMDGTEQPVTAQARKFAN-RLHGRFGVQVALHDERLTTVEARSHLFDHGGYKALNKG 120
Query: 135 KVDSIAAALILQEVLDR 151
KVD+ +A +IL+ +R
Sbjct: 121 KVDAASAVIILESWFER 137
>gi|167752474|ref|ZP_02424601.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
gi|167659543|gb|EDS03673.1| hypothetical protein ALIPUT_00725 [Alistipes putredinis DSM 17216]
Length = 137
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR G+A+SDP R A + K + + + +++ +IG
Sbjct: 1 MGRILAIDYGTKRTGIAVSDPLRIIAGGLETVETKGLERWL---AQYFAANDVSTIVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ M+G+ + VF+DER T+V A + +++ + + R K
Sbjct: 58 PMQMSGAPSETWRYVEPLAARLRRAYPDKEVVFYDERFTSVIAHRTMLESGMGKMARRDK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++ S
Sbjct: 118 ALVDKISATIILQGYMESRS 137
>gi|293390910|ref|ZP_06635244.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951444|gb|EFE01563.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 139
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I A ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P + F + + +P DERLTT A+ + R KVD
Sbjct: 64 NMDGTEQPLTLRAKKFAK-RLHGRFNIPVDLQDERLTTTEARSEIFSRGGYRALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ +
Sbjct: 123 GISACLILESWFEN 136
>gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
Length = 156
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + D GT RIG+AI A P L K+ E+ + AF++
Sbjct: 18 NTVRSVLGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEITRIVEEWKPDAFVV 77
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+M+GSE R F + + +P+ DERL++ A+ +I +R +
Sbjct: 78 GLPLDMDGSENEMCQRARKFAK-RLHGRFNLPYHMMDERLSSYEAKGQVIARGGNRNFKE 136
Query: 134 QKVDSIAAALILQEVL 149
VD +AA +IL+
Sbjct: 137 NSVDGLAAQMILETWF 152
>gi|154482585|ref|ZP_02025033.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
27560]
gi|149736610|gb|EDM52496.1| hypothetical protein EUBVEN_00252 [Eubacterium ventriosum ATCC
27560]
Length = 142
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G+K +G+A++DP A + R K+ +T + + NI ++
Sbjct: 1 MRILGLDFGSKTVGVAVTDPLGYTAQGVEIIRRDSPNKLRKTLARIEQLVEQYNIEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P+ ++G+EG RV T+ F ++R+ + VF DERLTTV A +I+ + + ++ R
Sbjct: 61 GYPVMLSGTEGERVKKTKEFGAM-LERRTGLEIVFQDERLTTVEAYEIMDEAGIKKQDRY 119
Query: 134 QKVDSIAAALILQEVLDRI 152
+ VD IAA +IL++ ++RI
Sbjct: 120 KYVDQIAATIILEDYINRI 138
>gi|119484674|ref|ZP_01619156.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
gi|119457492|gb|EAW38616.1| Holliday junction resolvase-like protein [Lyngbya sp. PCC 8106]
Length = 149
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D FA L R + +L + + ++GLP +M
Sbjct: 13 LGLDIGQKRIGVAGCDGLGLFATGLMTLKRSAFERDVAQLRELVEDRRVQVLVVGLPYSM 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G + + + + + + +P + DERLT+ A+Q+L D ++S + +D
Sbjct: 73 NGTIGFQAKKVQKYA-TGLAKALDLPLEYVDERLTSFQAEQMLRDAHISPSRNKGLIDRK 131
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LD+
Sbjct: 132 AAAIILQQWLDQRR 145
>gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 139
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG+AI A ++ ++ ++ ++GL
Sbjct: 3 SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + V DERL+TV A+ L + +
Sbjct: 63 PLNMDGTEQPLTARARKFAN-RLHGRFGVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 122 VDAASAVIILESWFE 136
>gi|269101817|ref|ZP_06154514.1| putative Holliday junction resolvase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161715|gb|EEZ40211.1| putative Holliday junction resolvase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 141
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ ++ + + D GTK IG+AI A P L + + + + +
Sbjct: 1 MSQSRTVLAFDYGTKSIGVAIGQEITGTAQPLKALKARDGIPSWEAIEQILKEWQPDLVV 60
Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL+M+G E + F + + + DERL+T A+ L + R
Sbjct: 61 VGLPLDMSGHELETITPRAKKFAN-RLHGRFGCQVELHDERLSTAEARAELFEFGGYRNL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
+DS +A +IL+ +
Sbjct: 120 SKGNIDSQSAVVILESWFEN 139
>gi|323698536|ref|ZP_08110448.1| Holliday junction resolvase YqgF [Desulfovibrio sp. ND132]
gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
ND132]
Length = 138
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID G KR+GLA+SD P L R EL I E I A ++GLP
Sbjct: 1 MRALGIDFGLKRVGLAVSDRTGTLVSPLKTLERTTRQALFDELTEIIHDEAIEAVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L ++G + R F + R++ P DERLT+ A++ L + KR +
Sbjct: 61 LALSGEDTLTTRQARNFAE-SLGRRIDAPVHLMDERLTSAQAEEELNAAGLRGAKRKAAL 119
Query: 137 DSIAAALILQEVLDR 151
DS AA +IL+ LD
Sbjct: 120 DSQAAVVILRSWLDS 134
>gi|315037653|ref|YP_004031221.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325956138|ref|YP_004286748.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|312275786|gb|ADQ58426.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1112]
gi|325332703|gb|ADZ06611.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
30SC]
gi|327182946|gb|AEA31393.1| Holliday junction resolvase-like protein [Lactobacillus amylovorus
GRL 1118]
Length = 142
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SD A + K L + + F++G
Sbjct: 1 MRLLGLDVGSKTVGVAVSDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDPEGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKR 132
LP NM+G+ G V ++A+ ++ K +P + DERLTT+ +Q++L++ + RKKR
Sbjct: 61 LPKNMDGTSGSSVARSKAYGK-RLEEKFGLPVYYSDERLTTIESQRVLVEDAGIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|158313531|ref|YP_001506039.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
Length = 188
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFIIGLP 76
+D+G+ R+G+A+SDP A P L R ++ EL + + ++GLP
Sbjct: 32 IGVDVGSVRVGVAVSDPDGLLAVPVTTLRRDVSRRGFADVDELADIVRDRHAVEVVVGLP 91
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G EG V R + + R VP DERLTTV A + + + + + R V
Sbjct: 92 RHLSGREGEAVRLARRYAEVLSARVAPVPVRLVDERLTTVVAHRRMAERGLRSRARRDLV 151
Query: 137 DSIAAALILQEVLD 150
D AA ILQ LD
Sbjct: 152 DQEAAVQILQHHLD 165
>gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
Length = 139
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D G ++IG+A+ + + A P L + +L + + A ++G
Sbjct: 1 MSRVLCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGE 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+G++ R F + I + V DERL++ A+Q +M +
Sbjct: 61 PSNMDGTDSDMAARARKFAN-RIHGRFGVKVALADERLSSFEAKQQAREMGHDGDYKKTP 119
Query: 136 VDSIAAALILQEVLD 150
+D++AA +ILQ +
Sbjct: 120 IDALAAMIILQSYFE 134
>gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium
SGP1]
Length = 146
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLS-FITTENIAAFIIGL 75
+ ++D+G+ R+G AISDP R A + ++G+
Sbjct: 7 GRVLALDVGSARVGAAISDPMRLIAQGLAVWPVVDRDGGWRRKFEACLVQYAPTLVLVGM 66
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G+ GP V + + F WDER TTV A + +I+ VSR R Q+
Sbjct: 67 PTRTDGTRGPEAERVAKLVDLLRAGHPDLAFDTWDERFTTVMAHRAMIEGGVSRSGRRQR 126
Query: 136 VDSIAAALILQEVL 149
VD IAA LIL+ L
Sbjct: 127 VDKIAAVLILESWL 140
>gi|251793467|ref|YP_003008196.1| Holliday junction resolvase-like protein [Aggregatibacter
aphrophilus NJ8700]
gi|247534863|gb|ACS98109.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
Length = 139
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I A ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIGKTIKEWQPARIVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E + F + + + +P DERLTT A+ + R KVD
Sbjct: 64 NMDGTEQELTLRAKKFAN-RLHGRFNLPVELQDERLTTTEARSEIFSRGGYRALNKSKVD 122
Query: 138 SIAAALILQEVLDRISF 154
I+A LIL+ ++ S
Sbjct: 123 GISACLILESWFEQYSE 139
>gi|86131929|ref|ZP_01050526.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
MED134]
gi|85817751|gb|EAQ38925.1| Holliday junction resolvase-like protein [Dokdonia donghaensis
MED134]
Length = 163
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
+ + I +ID GTKR G+A++D + A + K + + +++ E +
Sbjct: 21 FLHQILQMARIIAIDYGTKRTGVAVTDELQLIASGLTTVPTKDIFKFL---ATYLAEEKV 77
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A +IG P MN F ++ + + + DER T+ A Q +ID +
Sbjct: 78 EAMVIGEPKRMNNEASDVEEHIVRFRESVEKKHPELKIIRQDERFTSKMAFQTMIDSGIG 137
Query: 129 RKKR--IQKVDSIAAALILQEVL 149
+KKR VD I+A +ILQ+ L
Sbjct: 138 KKKRQNKALVDQISATIILQDYL 160
>gi|77361516|ref|YP_341091.1| Holliday junction resolvase-like protein [Pseudoalteromonas
haloplanktis TAC125]
gi|146325592|sp|Q3IFA0|RUVX_PSEHT RecName: Full=Putative Holliday junction resolvase
gi|76876427|emb|CAI87649.1| putative Holliday junction resolvase [Pseudoalteromonas
haloplanktis TAC125]
Length = 149
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 4 LLIEDLVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+ ++ Q + D GTK IG+AI A + + ++
Sbjct: 1 MTKKNFK---PQGQRTVMGFDFGTKSIGIAIGQELTGSASSLKAVKAQDGIPNWDDIAVQ 57
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ ++GLPLNM+G+ + F + + +P DERLTT A+ L
Sbjct: 58 VNEWQPDLMVVGLPLNMDGTAQEVTFKAKKFAN-RLHNHYAIPVETQDERLTTADAKARL 116
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + KVD+++A +IL+ +
Sbjct: 117 FEQGGYKNLGKGKVDNMSAVIILESFFE 144
>gi|172036395|ref|YP_001802896.1| Holliday junction resolvase-like protein [Cyanothece sp. ATCC
51142]
gi|254767512|sp|B1WX86|RUVX_CYAA5 RecName: Full=Putative Holliday junction resolvase
gi|171697849|gb|ACB50830.1| putative holliday junction resolvase, YqgF family [Cyanothece sp.
ATCC 51142]
Length = 143
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I +D+G KRIG+A D A + R+ Q +L + + + +I
Sbjct: 1 MERISALGLDVGKKRIGVAGCDGTGLIATGLTTIERQSFPQDVQQLEALVKEREVQLLVI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +M+G+ G + + F + + +P + DERLT+V A+ L +
Sbjct: 61 GLPYSMDGTIGFQAKKVQKFAK-RLSTALELPIEYIDERLTSVEAETHLKSQKKYSRYNK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD +AA +ILQ+ LD+
Sbjct: 120 GLVDRLAATIILQQWLDQRR 139
>gi|322514742|ref|ZP_08067768.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
25976]
gi|322119337|gb|EFX91453.1| crossover junction endodeoxyribonuclease [Actinobacillus ureae ATCC
25976]
Length = 137
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLSSFKAQDGIPNWDQIEKVIQEWLPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + ++ + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGTEQPLTQRAKKFAN-RLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|119716635|ref|YP_923600.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
gi|167012741|sp|A1SJC8|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase
gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
Length = 156
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA---AFIIGLP 76
ID G RIG+A SDP A P + R K + + + A ++GLP
Sbjct: 7 IGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G EGP R F + R VP DER+TTVSA+ +L D + KR V
Sbjct: 67 RSLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVV 126
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D AA LILQ LD ++ G
Sbjct: 127 DQAAAVLILQHALDTERATGAAPG 150
>gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
Length = 140
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R G+AISD A P + + A ++ ++GLP
Sbjct: 1 MRILAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+NMNG++G R AF + V V WDER TTV+A Q L + NV KKR V
Sbjct: 61 INMNGTKGERAEKCEAFAEM-LRGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKAVV 119
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ L
Sbjct: 120 DTVAATIILESYL 132
>gi|162148752|ref|YP_001603213.1| Holliday junction resolvase [Gluconacetobacter diazotrophicus PAl
5]
gi|209545482|ref|YP_002277711.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
gi|189046098|sp|A9HRJ3|RUVX_GLUDA RecName: Full=Putative Holliday junction resolvase
gi|161787329|emb|CAP56923.1| putative Holliday junction resolvase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533159|gb|ACI53096.1| Holliday junction resolvase YqgF [Gluconacetobacter diazotrophicus
PAl 5]
Length = 154
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + + + L +Q + +D G K IGLA+SD A P L R K++ A E+
Sbjct: 1 MPLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIR 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
E + + GLPL+M+GS GP + R ++ + +V +P WDERL++ + +
Sbjct: 61 RIAAREGVGGLVSGLPLSMDGSFGPAAQAARDWM-ISLSEQVGLPAAMWDERLSSSAVNR 119
Query: 121 ILI-DMNVSRKKRIQKVDSIAAALILQEVLD 150
+LI D +++R++R + VD +AA+ +LQ LD
Sbjct: 120 MLIQDADMTRQRRAELVDKLAASYMLQGALD 150
>gi|325144525|gb|EGC66824.1| hypothetical protein NMBM01240013_0937 [Neisseria meningitidis
M01-240013]
gi|325205893|gb|ADZ01346.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
gi|325208296|gb|ADZ03748.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
Length = 151
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + + F++G
Sbjct: 5 PKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDEKFAAIAKLVQEWQPRYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G++ H + F ++ + +P + DERL++V A+ +L + V KKR
Sbjct: 65 LPVHTDGTKHEMTHLSHKFGR-RLNGRFNLPVYWVDERLSSVYAESLLSEAQVFGKKRKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA IL +
Sbjct: 124 VLDQVAAQAILHGFFE 139
>gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 139
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG+AI A ++ ++ ++ ++GL
Sbjct: 3 SRTILAFDFGTKSIGVAIGQEITGTARALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + + + DERL+TV A+ L + +
Sbjct: 63 PLNMDGTEQPLTARARKFAN-RLHGRFGIAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 136 VDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 122 VDAASAVIILESWFE 136
>gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444]
gi|123128643|sp|Q0BZU8|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase
gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC
15444]
Length = 151
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+++ + DL + ID GT IG+A +D R A P +++KK+ + LL
Sbjct: 1 MAVVDLFDL----PREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLL 56
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
I+GLPLN++GS GPR S R V +++ + +P F DER ++ A
Sbjct: 57 HIYDERAAVGLIVGLPLNVDGSMGPRAQSVRTLVSSLL-KVRDLPVTFQDERYSSAEAGD 115
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
I+ +R+ R ++D+ AAA+ILQ+ L R+
Sbjct: 116 IMRAAGATRRNREARIDASAAAVILQDALSRL 147
>gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
Length = 139
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP + A + +++ ++ TE++ +IG
Sbjct: 1 MSRILAIDYGKKRTGIAVTDPMQIIASGLTTVATHELSVFLE---KYLNTEDVETIVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ ++ AF + ++ + DER T+ A Q +ID +S+ KR K
Sbjct: 58 PKQMDYTDSELGGVINAFAKALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNK 117
Query: 136 --VDSIAAALILQEVLDRIS 153
VD IAA +ILQ +DR S
Sbjct: 118 ALVDEIAATIILQTYMDRKS 137
>gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|226695313|sp|B1H0H2|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase
gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 140
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G KRIG+AI+D R A P + + + AL++L +++ ++GL
Sbjct: 1 MNRIMGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
PLNMNG+EG + R F+ I + DERLTTV A+++LI + ++SR+KR
Sbjct: 61 PLNMNGTEGGMAETVRKFIE-KIKFLSDIEVTTVDERLTTVQAERMLIEEADISREKRKG 119
Query: 135 KVDSIAAALILQEVLD 150
D + AALILQ LD
Sbjct: 120 IKDKVVAALILQTYLD 135
>gi|294788595|ref|ZP_06753837.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
29453]
gi|294483472|gb|EFG31157.1| putative Holliday junction resolvase [Simonsiella muelleri ATCC
29453]
Length = 154
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A + AHP + + + + + IT ++G
Sbjct: 11 PMGCALAFDFGETRIGVAQGNREIAIAHPIATITGQSNEEKLIAIARLITQWQPEYLVVG 70
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F + ++ + +P + DER +++ A+++L V KK
Sbjct: 71 LPVHADGTEHEVTALARKFG-HRLNARFRLPIYWADERFSSLYAEELLKQAQVFGKKNKA 129
Query: 135 KVDSIAAALILQEVLDR 151
+D +AA ILQ D
Sbjct: 130 VLDQVAAQAILQSFFDN 146
>gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 147
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G K IG+AISD A P + R + ++ I ++ ++GL
Sbjct: 1 MNRVLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMN + GP + F + K + V+ DER+TT+ A+ +L++ +V R+ R +
Sbjct: 61 PKNMNNTLGPTCQMVQKFSE-KLKNKFRLELVYVDERMTTLMAKDVLMEASVRRENRKKY 119
Query: 136 VDSIAAALILQEVLDR 151
VD IAAA IL+ +D
Sbjct: 120 VDKIAAAFILKTYMDS 135
>gi|313884998|ref|ZP_07818750.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619689|gb|EFR31126.1| RNAse H domain protein, YqgF family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 145
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGL 75
I +D+G+K +G+A+SD A + + LL + + +IGL
Sbjct: 6 RIVGLDVGSKTVGVAMSDLLGWIAQGLETIRIDEEAGDFGFDRLLELLDQHQVKKVVIGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQ 134
P NMN + GPR +++ + ++D + + + DERLTT A+++L + NVSR KR +
Sbjct: 66 PKNMNNTIGPRAQASQRYGQKLLDIRPDLLIAYQDERLTTSQAERMLVSEGNVSRSKRKK 125
Query: 135 KVDSIAAALILQEVLDRIS 153
+D +AA +ILQ LD S
Sbjct: 126 VIDKLAAVIILQNYLDANS 144
>gi|223986206|ref|ZP_03636224.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
12042]
gi|223961820|gb|EEF66314.1| hypothetical protein HOLDEFILI_03534 [Holdemania filiformis DSM
12042]
Length = 139
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL--SFITTENIAAFII 73
+ I +DLG++ +G+A+SDP A A F++
Sbjct: 1 MERIMGLDLGSRTLGIAVSDPLGMIARTVETFRFADDDYDAACARAVQLAKELGAVKFVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +MNG G R + F ++ +P + DERLTT +A++ILI +VSRKKR
Sbjct: 61 GLPKHMNGDVGIRGQISLDF-KAKLEAACGLPVILQDERLTTAAAERILISADVSRKKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D +AA ILQ LD+
Sbjct: 120 AVIDQMAAVQILQSYLDQKR 139
>gi|42518572|ref|NP_964502.1| hypothetical protein LJ0476 [Lactobacillus johnsonii NCC 533]
gi|62900996|sp|Q74KV1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase
gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533]
Length = 143
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + K + ++ + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+GS G V ++ + + K +P + DERLTTV A +IL+ + V R +R
Sbjct: 61 LPKNMDGSSGHSVERSKQYGE-RLKEKFDLPVYYMDERLTTVQADRILVEEAGVHDRVER 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 120 KKVIDQMAAVLILQNYLE 137
>gi|316933654|ref|YP_004108636.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
gi|315601368|gb|ADU43903.1| Holliday junction resolvase YqgF [Rhodopseudomonas palustris DX-1]
Length = 160
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/134 (44%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Query: 26 TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGP 85
TK IG+A SDP RR A + RK T A LL+ F++GLPLNM+GSEGP
Sbjct: 28 TKTIGVAASDPDRRLATGVETIARKAFTADAARLLALAAERTACGFVLGLPLNMDGSEGP 87
Query: 86 RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALIL 145
R STRAF + + +P WDERL+T + ++ LI +VSR KR + +D AA IL
Sbjct: 88 RAQSTRAFAR-NLAKLTELPIGLWDERLSTAAVERELIANDVSRAKRAKVIDEHAAIFIL 146
Query: 146 QEVLDRISFLESSK 159
Q LDR++ L ++
Sbjct: 147 QGALDRLAALRRAE 160
>gi|227505017|ref|ZP_03935066.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
6940]
gi|227198381|gb|EEI78429.1| possible Holliday junction resolvase [Corynebacterium striatum ATCC
6940]
Length = 180
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-----ALELLSFITTENI 68
N ++D+GT RIG+A+SD A P + R+ + +L I ++
Sbjct: 13 PGNGRRLALDVGTVRIGVAVSDSNASLALPVETVSRETGFKDQDKGDIDRILELIREYHV 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR------KVYVPFVFWDERLTTVSAQQIL 122
++GLP ++ G+ V + + R P DERLTTV+A L
Sbjct: 73 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLGKDETIGQPPVRMADERLTTVAATTAL 132
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
VS KK + +D AA ILQ LD R + L+S
Sbjct: 133 RASGVSEKKGRKVIDQAAAVEILQSWLDARHNALQSDA 170
>gi|116629094|ref|YP_814266.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
gi|238853837|ref|ZP_04644202.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282852131|ref|ZP_06261488.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311111120|ref|ZP_07712517.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
gi|122273908|sp|Q045P4|RUVX_LACGA RecName: Full=Putative Holliday junction resolvase
gi|116094676|gb|ABJ59828.1| RNase H-like ribonuclease [Lactobacillus gasseri ATCC 33323]
gi|238833532|gb|EEQ25804.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
gi|282556695|gb|EFB62300.1| RNAse YqgF [Lactobacillus gasseri 224-1]
gi|311066274|gb|EFQ46614.1| putative Holliday junction resolvase [Lactobacillus gasseri MV-22]
Length = 143
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + K + ++ + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKLVRKYDVEGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS-RKKR 132
LP NM+GS G V ++ + + K +P + DERLTTV A +IL + V R +R
Sbjct: 61 LPKNMDGSSGHSVERSKQYGE-RLKEKFDLPVHYMDERLTTVQADRILVQEAGVHDRVER 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 120 KKVIDQMAAVLILQSYLE 137
>gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
Length = 166
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
++D+G+ R+G+A+SDP A P L R K L +T + I
Sbjct: 17 PGRGRRLAVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLAELVTEHEVVEVI 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + +G A+ + R VP DERLTTV+A ++L V +K+
Sbjct: 77 VGLPRTLANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASRMLSQRGVKGRKQ 136
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
VD AA ILQ LD + + KG
Sbjct: 137 RAVVDQAAAVEILQAWLDAAAAHRARKG 164
>gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
Length = 143
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + K + ++ + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+GS G V ++ + + K +P + DERLTTV A +IL+ + V R +R
Sbjct: 61 LPKNMDGSSGRSVERSKQYGE-RLKEKFDLPVYYMDERLTTVQADRILVEEAGVHDRVER 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 120 KKVIDQMAAVLILQNYLE 137
>gi|330961163|gb|EGH61423.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 146
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + IT A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFSR-RLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
Length = 143
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + K + ++ + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+GS G V ++ + + K +P + DERLTTV A +IL+ + V R +R
Sbjct: 61 LPKNMDGSSGHSVERSKQYGG-RLKEKFDLPVYYVDERLTTVQADRILVEEAGVHDRVER 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 120 KKVIDQMAAVLILQNYLE 137
>gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
Length = 143
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + K + ++ + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVS-RKKR 132
LP NM+GS G V ++ + + K +P + DERLTTV A +IL + V R +R
Sbjct: 61 LPKNMDGSSGHSVERSKQYGE-RLKEKFDLPVHYMDERLTTVQADRILVQEAGVHDRVER 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 120 KKVIDQMAAVLILQSYLE 137
>gi|28872152|ref|NP_794771.1| hypothetical protein PSPTO_5038 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213971481|ref|ZP_03399593.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato T1]
gi|301385811|ref|ZP_07234229.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato Max13]
gi|302062228|ref|ZP_07253769.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato K40]
gi|302133701|ref|ZP_07259691.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|32130016|sp|Q87VA1|RUVX_PSESM RecName: Full=Putative Holliday junction resolvase
gi|28855406|gb|AAO58466.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213923763|gb|EEB57346.1| holliday junction resolvase-like protein [Pseudomonas syringae pv.
tomato T1]
gi|330873936|gb|EGH08085.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963801|gb|EGH64061.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331018478|gb|EGH98534.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 146
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFSR-KLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Rv]
gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis CDC1551]
gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis
AF2122/97]
gi|121638439|ref|YP_978663.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148662393|ref|YP_001283916.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|148823750|ref|YP_001288504.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis F11]
gi|167968835|ref|ZP_02551112.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|215404503|ref|ZP_03416684.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 02_1987]
gi|215412328|ref|ZP_03421088.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 94_M4241A]
gi|215427950|ref|ZP_03425869.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T92]
gi|215431512|ref|ZP_03429431.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis EAS054]
gi|218754294|ref|ZP_03533090.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis GM 1503]
gi|219558558|ref|ZP_03537634.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T17]
gi|224990933|ref|YP_002645620.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253798365|ref|YP_003031366.1| hypothetical protein TBMG_01418 [Mycobacterium tuberculosis KZN
1435]
gi|254232676|ref|ZP_04926003.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254366759|ref|ZP_04982802.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551606|ref|ZP_05142053.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260187568|ref|ZP_05765042.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis CPHL_A]
gi|260201681|ref|ZP_05769172.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis T46]
gi|260205873|ref|ZP_05773364.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis K85]
gi|260205876|ref|ZP_05773367.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis K85]
gi|289444090|ref|ZP_06433834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289448203|ref|ZP_06437947.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289553656|ref|ZP_06442866.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570723|ref|ZP_06450950.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289575260|ref|ZP_06455487.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
gi|289575262|ref|ZP_06455489.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289746346|ref|ZP_06505724.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289751173|ref|ZP_06510551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754672|ref|ZP_06514050.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289762724|ref|ZP_06522102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994335|ref|ZP_06800026.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis 210]
gi|297635165|ref|ZP_06952945.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN 4207]
gi|297732157|ref|ZP_06961275.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN R506]
gi|298526027|ref|ZP_07013436.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776828|ref|ZP_07415165.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
SUMu001]
gi|306785356|ref|ZP_07423678.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
SUMu003]
gi|306794036|ref|ZP_07432338.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
SUMu005]
gi|307085241|ref|ZP_07494354.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
SUMu012]
gi|313659491|ref|ZP_07816371.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis KZN V2475]
gi|54039585|sp|P67488|RUVX_MYCBO RecName: Full=Putative Holliday junction resolvase
gi|54042290|sp|P67487|RUVX_MYCTU RecName: Full=Putative Holliday junction resolvase
gi|167012735|sp|A1KLQ2|RUVX_MYCBP RecName: Full=Putative Holliday junction resolvase
gi|167012738|sp|A5U5Q4|RUVX_MYCTA RecName: Full=Putative Holliday junction resolvase
gi|254767520|sp|C1AF23|RUVX_MYCBT RecName: Full=Putative Holliday junction resolvase
gi|1781048|emb|CAB06184.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13882373|gb|AAK46943.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31619331|emb|CAD94769.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494087|emb|CAL72565.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601735|gb|EAY60745.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134152270|gb|EBA44315.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506545|gb|ABQ74354.1| Holliday junction resolvase-like protein [Mycobacterium
tuberculosis H37Ra]
gi|148722277|gb|ABR06902.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774046|dbj|BAH26852.1| Holliday junction resolvase-like protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253319868|gb|ACT24471.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289417009|gb|EFD14249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289421161|gb|EFD18362.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289438288|gb|EFD20781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539691|gb|EFD44269.1| Holliday junction resolvase [Mycobacterium tuberculosis K85]
gi|289539693|gb|EFD44271.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289544477|gb|EFD48125.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686874|gb|EFD54362.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289691760|gb|EFD59189.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695259|gb|EFD62688.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289710230|gb|EFD74246.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|298495821|gb|EFI31115.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308214755|gb|EFO74154.1| hypothetical protein TMAG_02358 [Mycobacterium tuberculosis
SUMu001]
gi|308329948|gb|EFP18799.1| hypothetical protein TMCG_01799 [Mycobacterium tuberculosis
SUMu003]
gi|308337593|gb|EFP26444.1| hypothetical protein TMEG_03230 [Mycobacterium tuberculosis
SUMu005]
gi|308365195|gb|EFP54046.1| hypothetical protein TMLG_02282 [Mycobacterium tuberculosis
SUMu012]
gi|323718827|gb|EGB27983.1| hypothetical protein TMMG_02565 [Mycobacterium tuberculosis
CDC1551A]
gi|326904169|gb|EGE51102.1| hypothetical protein TBPG_02063 [Mycobacterium tuberculosis W-148]
gi|328458135|gb|AEB03558.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 170
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G RIG+A SDP A P + R + + L + I+
Sbjct: 19 PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + R P DERLTTVSAQ+ L V ++
Sbjct: 79 GLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQR 138
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+D AA ILQ LD L + G
Sbjct: 139 AVIDQAAAVAILQSWLDER--LAAMAG 163
>gi|227894661|ref|ZP_04012466.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
gi|227863556|gb|EEJ70977.1| crossover junction endodeoxyribonuclease [Lactobacillus ultunensis
DSM 16047]
Length = 142
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SD A + K L + + F++G
Sbjct: 1 MRLLGLDVGSKTVGVAVSDELGITAQKLETIHIDETKYNFGMRPLKKLVRQYDPDGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKR 132
LP NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 61 LPKNMDGTSGASVARSKAYGK-RLEDKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi
35000HP]
gi|62901013|sp|Q7VKS6|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase
gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 138
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D GT IG A+ + A + + I ++GLPL
Sbjct: 4 TILAFDFGTYSIGCAVGQSITKTAQSLTAFKSQDGIPNWQHIEKIIKEWQPDLLVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE P R F + ++ + +P DERLTT A+ + + + K+D
Sbjct: 64 NMDGSEQPLTQRARKFAN-RLNGRFNLPVALQDERLTTTEAKSEIFSRGGYKALKKDKID 122
Query: 138 SIAAALILQEVLDRIS 153
+I+A LIL+ D
Sbjct: 123 TISACLILESWFDNNP 138
>gi|268316439|ref|YP_003290158.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
gi|262333973|gb|ACY47770.1| Holliday junction resolvase YqgF [Rhodothermus marinus DSM 4252]
Length = 145
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D GT+R+GLA++DP R A P L E I +IG PL
Sbjct: 4 RVVAVDYGTRRVGLALADPLRVIAQPYGTYA---PEAALQVLQRLHAEEGIETLVIGWPL 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQK 135
G+EG F+ + V V WDER T+ A++ L ++ RKKR +
Sbjct: 61 TEAGTEGEATRRVERFIRRLRRLLPGVQIVRWDERYTSELAKERLREVGGPRKKRRDKGR 120
Query: 136 VDSIAAALILQEVLDR 151
+D +AA +ILQE L++
Sbjct: 121 IDQMAAVIILQEYLEQ 136
>gi|163790356|ref|ZP_02184788.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
gi|159874427|gb|EDP68499.1| Holliday junction resolvase-like protein [Carnobacterium sp. AT7]
Length = 140
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+D+G+K +G+A+SDP A + + + + I + +IG
Sbjct: 1 MRTMGLDVGSKTVGVAVSDPFGWTAQGIEIVKINEAQEEYGIDRIGELIAIHEVTKVVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-VSRKKRI 133
LP NMN S GPR ++ + + +P + DERLTTV A+++LI+ SR KR
Sbjct: 61 LPKNMNNSIGPRAEASLRYAELV-KETFGLPVILQDERLTTVQAERMLIEEGNTSRAKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ +D +AA +ILQ L++
Sbjct: 120 KVIDKVAAVMILQNYLNQ 137
>gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
Length = 140
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ + + D GT+ IG AI A P + ++ + ++G
Sbjct: 2 NSRTLLAFDFGTRSIGCAIGQELTGSARPLQSFKANEGIPDWQQIEKVLREWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + + V DERL+TV A+ L R
Sbjct: 62 LPLNMDGSEQPLTQLARKFAN-RLHGRFGVQIALHDERLSTVEARAHLFADGGYRALEKG 120
Query: 135 KVDSIAAALILQEVLDR 151
+VD+ +AALIL+ D
Sbjct: 121 RVDAASAALILESWFDN 137
>gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
Length = 155
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 65/131 (49%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G RIG+A++DP + + P L ELL+ I + +IG+P+++
Sbjct: 8 IGVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVVIGMPVHL 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG EG R F + + + DERLTT A L +M V + R K+D +
Sbjct: 68 NGKEGSSAEFVRDFANELAVEIPDIRVCLMDERLTTNQAHAGLSEMGVDNRARKNKIDQL 127
Query: 140 AAALILQEVLD 150
AA++IL+ ++
Sbjct: 128 AASIILENAIE 138
>gi|229825002|ref|ZP_04451071.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
gi|229790749|gb|EEP26863.1| hypothetical protein GCWU000182_00351 [Abiotrophia defectiva ATCC
49176]
Length = 140
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +DLG+K G+A++D A + RK K+ QT + + ++
Sbjct: 1 MRIMGLDLGSKTCGVAVTDGLGLTAQGLEVIRRKEENKLRQTLARITELTEEYKVEKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P NM+GS R + F + + + + WDERLTTVSA +I+I+ + R++R
Sbjct: 61 GYPKNMDGSVSKRCELSEEFAK-KLTGRTGIEVILWDERLTTVSAHEIMIEAGLKREERE 119
Query: 134 QKVDSIAAALILQEVLD 150
+ VD +AA IL++ ++
Sbjct: 120 KIVDKVAAVFILEDYMN 136
>gi|225024365|ref|ZP_03713557.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
23834]
gi|224942862|gb|EEG24071.1| hypothetical protein EIKCOROL_01240 [Eikenella corrodens ATCC
23834]
Length = 148
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D G RIG+A D AHP + + + + + + F++G
Sbjct: 5 PHGTTLAFDFGETRIGVAQGDAEVGIAHPLATISGEGNDKKFAAIAALVAEWRPVQFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +GSE R F + ++ + +P + DERLT++ A ++L + +K+
Sbjct: 65 LPFSTDGSEHEMTRLARKFG-HRLNGRFGLPVYWADERLTSLYATELLNQTGLHGRKQKP 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|163852734|ref|YP_001640777.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
gi|163664339|gb|ABY31706.1| Holliday junction resolvase YqgF [Methylobacterium extorquens PA1]
Length = 160
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPL
Sbjct: 13 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD
Sbjct: 73 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131
Query: 138 SIAAALILQEVLD 150
+AAA ILQ LD
Sbjct: 132 KLAAAYILQSCLD 144
>gi|238021394|ref|ZP_04601820.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
gi|237868374|gb|EEP69380.1| hypothetical protein GCWU000324_01293 [Kingella oralis ATCC 51147]
Length = 164
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D + + D G RIG A D R AHP + + + + I
Sbjct: 3 DFAA--PASGGCLAFDFGETRIGAAQGDCRIRIAHPIATITGNSNDEKFARIAALIQEWQ 60
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP++++GSE R F + ++ + +P + DERL++V A+++L + V
Sbjct: 61 PENLIVGLPVHIDGSEHALTRLARKFG-HRLNGRFRLPVYWVDERLSSVYAEELLRENGV 119
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+K+ +D +AA ILQ D
Sbjct: 120 RGRKQKPVLDQVAAQAILQSFFDN 143
>gi|325280500|ref|YP_004253042.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
gi|324312309|gb|ADY32862.1| Holliday junction resolvase [Odoribacter splanchnicus DSM 20712]
Length = 141
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR+GLA+SDP A ++ +++ + ++++ E + F++G
Sbjct: 1 MGRILAIDYGKKRVGLAVSDPCGIIATGLQTVLSQEIFRFLE---AYLSHEKVDLFVVGH 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ S+ + + F+ + R ++P V +DER T+V A + L++ +K R
Sbjct: 58 PKQMDNSDSESMTYIKPFLSGLKRRFPHIPIVMYDERFTSVLAHKALLEGGAKKKTRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
+D+++A +IL +++ L+
Sbjct: 118 ALIDTMSATIILTSYMEQQRNLK 140
>gi|254562494|ref|YP_003069589.1| Holliday junction resolvase [Methylobacterium extorquens DM4]
gi|254269772|emb|CAX25744.1| putative Holliday junction resolvase [Methylobacterium extorquens
DM4]
Length = 160
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPL
Sbjct: 13 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD
Sbjct: 73 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 131
Query: 138 SIAAALILQEVLD 150
+AAA ILQ LD
Sbjct: 132 KLAAAYILQSCLD 144
>gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 140
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GTK IG AI A + T ++ + ++G
Sbjct: 2 SNRTIIAFDFGTKSIGAAIGQEITGTARALAAFKAQDGTPDWQKIEKLLKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + + V DERL+TV A+ L D R
Sbjct: 62 LPLNMDGSEQPLTERARKFAN-RLHGRFGVKIDLHDERLSTVEARSHLFDRGGFRALDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VDS +A +IL+ ++
Sbjct: 121 SVDSASAVVILESWFEQ 137
>gi|22299872|ref|NP_683119.1| Holliday junction resolvase-like protein [Thermosynechococcus
elongatus BP-1]
gi|32130026|sp|Q8DGI8|RUVX_THEEB RecName: Full=Putative Holliday junction resolvase
gi|22296057|dbj|BAC09881.1| tll2329 [Thermosynechococcus elongatus BP-1]
Length = 151
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +DLG KRIG+A D + A + R+ +L + I+GLP
Sbjct: 4 VLGLDLGRKRIGVAGCDRLGQLATGITTIYRRNFASDVAQLRRICQERGVEKLIVGLPYT 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G G + + I + +P + DERLT+ A++IL S + VD
Sbjct: 64 LDGQLGSQARQVQHLAE-KIGAALNLPVEYIDERLTSFQAEEILKQRRRSPRHHKDLVDQ 122
Query: 139 IAAALILQEVLDRIS 153
IAAALILQ+ LD S
Sbjct: 123 IAAALILQQWLDARS 137
>gi|289647574|ref|ZP_06478917.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 146
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ AH L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQAHELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSR-KLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|330501372|ref|YP_004378241.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
NK-01]
gi|328915658|gb|AEB56489.1| Holliday junction resolvase-like protein [Pseudomonas mendocina
NK-01]
Length = 144
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D GTK+IG+A+ A L + + + I A ++
Sbjct: 4 KPLRLLLGFDYGTKQIGVAVGQVITGQARELCVLKAQNGVPDWSRVEALIKEWQPDAVVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+ F ++ + +P DERLTT A+ + S R
Sbjct: 64 GLPLNMDGTPSEMSARAEKFAR-RLNGRFNLPAYTHDERLTTFEAKGQRLREGQSGGYRE 122
Query: 134 QKVDSIAAALILQEVLDR 151
+ VD+IAAAL+LQ L+
Sbjct: 123 RPVDAIAAALLLQGWLEE 140
>gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
Wilmington]
gi|62900964|sp|Q68X41|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase
gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str.
Wilmington]
Length = 156
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I +++ + L PN+P+ +ID G+K+IG+A+SD A P + LL
Sbjct: 1 MIIKNLQEFYRLLIPNEPLIAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ I + +IGLP++M+G + + F + + V +P DERLTT SA
Sbjct: 61 NIIEKYQVCGIVIGLPIDMSGGVTKQTNIVMKFAD-KLKQSVSLPIYLQDERLTTKSANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
L + RK R D++AA++IL+ VL+ I
Sbjct: 120 FLKSFGIKRKDRNNNDDAVAASMILEIVLNAI 151
>gi|58336756|ref|YP_193341.1| Holliday junction resolvase-like protein [Lactobacillus acidophilus
NCFM]
gi|227903317|ref|ZP_04021122.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
gi|62900899|sp|Q5FLW4|RUVX_LACAC RecName: Full=Putative Holliday junction resolvase
gi|58254073|gb|AAV42310.1| hypothetical protein LBA0419 [Lactobacillus acidophilus NCFM]
gi|227868946|gb|EEJ76367.1| crossover junction endodeoxyribonuclease [Lactobacillus acidophilus
ATCC 4796]
Length = 142
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISD A + K L + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDELGITAQKLETIQIDETKYNFGMRPLKKLVRQYDVDGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKR 132
LP NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++LI+ + RKKR
Sbjct: 61 LPKNMDGTSGNSVARSKAYGK-RLEEKFNLPVYYSDERLTTIESRRVLIEDAGMHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|313902392|ref|ZP_07835795.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
13965]
gi|313467323|gb|EFR62834.1| Holliday junction resolvase YqgF [Thermaerobacter subterraneus DSM
13965]
Length = 330
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+DLG++ IG+AISDP A P L R+ + ++ ++G P
Sbjct: 1 MRWLGLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++G GP + A + WDERL+TV A+++LID ++SR++R +
Sbjct: 61 RRLDGRRGPEAEAAEA-FAAGLQAAGVSRVTLWDERLSTVQAERVLIDADLSRRRRKAII 119
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA +ILQ L+ ++ G
Sbjct: 120 DRMAATVILQAFLEAQRRQRATGG 143
>gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
Length = 140
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D GTK IG+AI A L + L++ + ++GL
Sbjct: 3 NRTIMAFDFGTKSIGVAIGQTITGTATALSALKARDGIPDWLQVEKLLGEWQPELVVVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P R F + + R V DERL+TV+A+ L + R
Sbjct: 63 PLNMDGTEQPLTSRARKFANRLHSR-FNVKIALHDERLSTVAARAHLFNHGGYRALDKGN 121
Query: 136 VDSIAAALILQEVLDR 151
VD+ +AA+IL ++
Sbjct: 122 VDAASAAVILCSWFEQ 137
>gi|298492528|ref|YP_003722705.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
gi|298234446|gb|ADI65582.1| Holliday junction resolvase YqgF ['Nostoc azollae' 0708]
Length = 158
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ + L + +D+G+KRIGLA D A + RK + ++
Sbjct: 1 MIPQQKLKSFISA----LGVDVGSKRIGLAGCDGTGLIATGLTTIDRKSFEEDVEQIQQI 56
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ + ++GLP M+GS G + + F + + + + +P + DERLT+ A+Q+L
Sbjct: 57 VNARRVQVLVVGLPYAMDGSLGFQARHVQKF-THRLAQALKLPVEYVDERLTSYQAEQLL 115
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
I N S + +D AAALILQ+ LD
Sbjct: 116 IAENRSPSRHKGLIDRKAAALILQQWLD 143
>gi|315635115|ref|ZP_07890393.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
ATCC 33393]
gi|315476077|gb|EFU66831.1| crossover junction endodeoxyribonuclease [Aggregatibacter segnis
ATCC 33393]
Length = 139
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I ++GLPL
Sbjct: 4 TVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWEAIEKCIQDWQPERLVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P + F + + + +P DERLTT A+ + R KVD
Sbjct: 64 NMDGTEQPLTLRAKKFAN-RLHGRFNLPVELQDERLTTTEARSEIFGRGGYRALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ ++
Sbjct: 123 GISACLILESWFEQ 136
>gi|261867346|ref|YP_003255268.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412678|gb|ACX82049.1| Holliday junction resolvase-like protein [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 139
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + + I A ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPNWDAIEKCIQEWQPARIVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E P + F + + VP DERLTT A+ + KVD
Sbjct: 64 NMDGTEQPLTLRAKKFAK-RLHGRFNVPVDLQDERLTTTEARSEIFSRGGYHALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ +
Sbjct: 123 GISACLILESWFEN 136
>gi|150007310|ref|YP_001302053.1| Holliday junction resolvase-like protein [Parabacteroides
distasonis ATCC 8503]
gi|167012744|sp|A6L9R7|RUVX_PARD8 RecName: Full=Putative Holliday junction resolvase
gi|149935734|gb|ABR42431.1| putative endonuclease [Parabacteroides distasonis ATCC 8503]
Length = 140
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A +D + A+ + +V + + +I+ E + F++GL
Sbjct: 1 MGRIIAIDYGRKRTGIAATDILQMIANGVATVPSGEVVKYLSD---YISREPVDLFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
MN + AFV ++ +P ++DER T+V A + +++ + +KKR
Sbjct: 58 RKQMNNEPSENMKYVEAFVTHLKRTIPSIPVTYYDERFTSVLAHKAMLEGGLKKKKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
VD I+A +ILQ L+ +
Sbjct: 118 GLVDEISAVIILQAYLESKKY 138
>gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836]
Length = 141
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++D GTKR G+A+SD + A+ + + +++ E++ I+GL
Sbjct: 1 MGRYLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTLLDYL---KTYLQKEDVERIIVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + R FV + + ++DER T+ A + ++D + + R
Sbjct: 58 PKQMNNEYSENMKHIRPFVKKLQSLYPDMQIEYYDERFTSALAHKTMLDAGLKKTDRQNK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++ +
Sbjct: 118 SLVDEISATIILQGYMESLR 137
>gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026]
Length = 143
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISDP A + K + ++ + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+GS G V ++ + + K +P + DERLTTV A +IL+ + V R +R
Sbjct: 61 LPKNMDGSSGHSVERSKQYGE-RLKEKFDLPVYYMDERLTTVQADRILVEEAGVHDRVER 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 120 KKVIDQMAAVLILQNYLE 137
>gi|300934542|ref|ZP_07149798.1| Holliday junction resolvase-like protein [Corynebacterium resistens
DSM 45100]
Length = 192
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+GT RIGLA+SDP A P + + ++ + + II
Sbjct: 38 PGRGRRLGIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVVEVII 97
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNVS 128
GLP+ + G+ +AF + D +P DER++TV+A + V+
Sbjct: 98 GLPVALRGNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHASGVN 157
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
KK +++D AA ILQ LD
Sbjct: 158 VKKGRKRIDQAAAVHILQGWLD 179
>gi|241759931|ref|ZP_04758031.1| conserved hypothetical protein [Neisseria flavescens SK114]
gi|241319939|gb|EER56335.1| conserved hypothetical protein [Neisseria flavescens SK114]
Length = 151
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G RIG+ D HP + + + + F++G
Sbjct: 5 PKGTVLAFDFGETRIGVVQGDAELGMTHPLATVTGNSNDEKFEAIAKLVKEWQPKYFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP + +G+E +R F + + +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPTHTDGTEHELTRLSRKFGR-RLHGRFNLPVYWVDERMSSLYAESLLAEAQVFGRKQKS 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
Length = 136
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP + A + + ++ E + F+IG
Sbjct: 1 MARILAIDYGKKRTGLAVTDPLQLIASGLTTVATHDLIPYL---KKYLAQEAVELFLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P N++G + + VP DER T+ A Q +ID + +K R
Sbjct: 58 PKNLDGGATHATPLVVECIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKKDRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +ILQE L
Sbjct: 118 GLVDEISATIILQEYL 133
>gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
Length = 140
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I ++D+G +RIG+A+SD P + R K + +++ I +I + GLP
Sbjct: 4 KRILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
NM+G+ G + T FV + + VF DERL+T SA+Q++ V +K +
Sbjct: 64 KNMDGTVGFQGEKTMQFVEQLQQLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKNM 123
Query: 136 VDSIAAALILQEVL 149
+D+IAA IL+ L
Sbjct: 124 IDTIAAVFILETYL 137
>gi|163792874|ref|ZP_02186850.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
gi|159181520|gb|EDP66032.1| Holliday junction resolvase YqgF [alpha proteobacterium BAL199]
Length = 168
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 2/139 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+I DL + L P + +D GTK IG+A+SD R A P + R+K ++ A E+L
Sbjct: 1 MAICKPADLHRLLGPGARLMGLDFGTKTIGIAVSDAALRVASPVTIIRRRKFSEDAAEIL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + NI F++GLPLNM+G+EGPR STR ++ R +P VF DER++T + ++
Sbjct: 61 ALVGSRNIGGFVVGLPLNMDGTEGPRCQSTRDLTAELLLR-HDLPTVFQDERMSTQAVER 119
Query: 121 ILI-DMNVSRKKRIQKVDS 138
+I + +++R +R + +DS
Sbjct: 120 AMISEADLTRGQRKKSIDS 138
>gi|262202251|ref|YP_003273459.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
gi|262085598|gb|ACY21566.1| Holliday junction resolvase YqgF [Gordonia bronchialis DSM 43247]
Length = 143
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 1/140 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
+D+G+ RIG+A+ DP A P + R + + + + A I+
Sbjct: 4 TRGRRLGVDVGSVRIGVAVCDPDGILATPVETVARTPHNDDDIERIATLVDEYDAAEVIV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G + R F + R V + DERLTTV+A Q + + K
Sbjct: 64 GLPKTLRNEAGAAAEAARDFGDRLAARIAPVGVSYHDERLTTVTAHQAMRASGRNAKSSR 123
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D AA ILQ LD
Sbjct: 124 AVIDQAAAVAILQGWLDARR 143
>gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium
lipophiloflavum DSM 44291]
Length = 164
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENI 68
N +D+GT RIG+A+SD R A P + R L+ I
Sbjct: 13 PGNGRRIGLDVGTVRIGVAVSDRDARLAMPVETVDRVTNFGDDDGADVDRLVELIGFYGA 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP ++ G+ V + + VP DERLTTV+A L VS
Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAEDIAA-RLRARCGVPVRMGDERLTTVAATHALRASGVS 131
Query: 129 RKKRIQKVDSIAAALILQEVLD-RISFLESS 158
K + +D AA ILQ LD R++ L+ +
Sbjct: 132 AKAGRKVIDQAAAVEILQSWLDGRLTTLKET 162
>gi|218531575|ref|YP_002422391.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
CM4]
gi|218523878|gb|ACK84463.1| Holliday junction resolvase YqgF [Methylobacterium chloromethanicum
CM4]
Length = 165
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T ++S T + +IGLPL
Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPL 77
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + LI+ + SR +R + VD
Sbjct: 78 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLIEADASRARRGELVD 136
Query: 138 SIAAALILQEVLD 150
+AAA ILQ LD
Sbjct: 137 KLAAAYILQSCLD 149
>gi|24374858|ref|NP_718901.1| Holliday junction resolvase-like protein [Shewanella oneidensis
MR-1]
gi|32130031|sp|Q8EBZ8|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase
gi|24349553|gb|AAN56345.1|AE015772_5 conserved hypothetical protein TIGR00250 [Shewanella oneidensis
MR-1]
Length = 141
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+A+ A P + E+ I ++GLP
Sbjct: 4 KTVLGFDFGTKSIGVAVGQQITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E H R F + ++ K V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQEMTHRARKFAN-RLNAKFGVKIFTQDERLTTTDAKARLFELGGYKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIIESYFEN 137
>gi|71737640|ref|YP_272778.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|146325590|sp|Q48P91|RUVX_PSE14 RecName: Full=Putative Holliday junction resolvase
gi|71558193|gb|AAZ37404.1| conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321976|gb|EFW78072.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330919|gb|EFW86893.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 146
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSR-KLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRNNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
43243]
gi|217991736|gb|EEC57740.1| hypothetical protein BACPEC_00724 [Bacteroides pectinophilus ATCC
43243]
Length = 139
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D GTK +G+A++DP P + R K+ T + I ++ ++
Sbjct: 1 MRILGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+EG R +R F ++R+ + V DERLTTV A++IL V+RK
Sbjct: 61 GLPLNMDGTEGERAACSREFGDM-LERRTGLQVVMTDERLTTVEAEEILETCKVARKDYK 119
Query: 134 QKVDSIAAALILQEV 148
+ VDS+AA LIL++
Sbjct: 120 KYVDSVAAVLILEDY 134
>gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a]
gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction
resolvase [Frankia alni ACN14a]
Length = 205
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAFII 73
+D+G+ R+G+A SDPG A P L R K +E L + ++
Sbjct: 27 RRGVRIGVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIEQLVQIVRDRQAVEVVV 86
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP M+G EG V R +V + +R VP F DERLTTV+A + + + V + R
Sbjct: 87 GLPRQMSGQEGRAVQLVRQYVEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRARR 146
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD AA ILQ LD
Sbjct: 147 SLVDQEAAVQILQHDLDSRP 166
>gi|291530568|emb|CBK96153.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum 70/3]
Length = 149
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G GLA D + A P + + ++ + + ++G P
Sbjct: 1 MKIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+NMNG+ GPR R F + + +P V WDER TTV+A ++ D+N K+R + +
Sbjct: 61 INMNGTYGPRSEKCRMFADM-LQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVI 119
Query: 137 DSIAAALILQEVLDRISFL 155
D++AAA+ILQ LD + L
Sbjct: 120 DAVAAAVILQNYLDYKANL 138
>gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans
OS217]
gi|123060738|sp|Q12KS4|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase
gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217]
Length = 141
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ NQ + D GTK IG+A+ A P L + E+ I +
Sbjct: 1 MTMNQTVLGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+G+E + F + I + V + DERLTT A+ L ++ +
Sbjct: 61 VGLPLNMDGTEQDITQRAKKFAN-RISGRFGVKVLTQDERLTTADAKARLFELGGYKALT 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+VD+++A LI++ +
Sbjct: 120 KGQVDAVSAVLIIESYFEN 138
>gi|302189825|ref|ZP_07266498.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae 642]
Length = 146
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSR-RLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|325833474|ref|ZP_08165923.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
gi|325485398|gb|EGC87867.1| RNAse H domain protein, YqgF family [Eggerthella sp. HGA1]
Length = 138
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G R+G+A+SDPG R A P L +V A + + GLP
Sbjct: 1 MRIMALDIGDTRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRVLEDWEPELLLCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M G+EGP+ R I +P+ F DERL++ A++ L + ++ K K+
Sbjct: 61 YTMAGAEGPQAARIRKVAK-TISDACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKI 119
Query: 137 DSIAAALILQEVLDRISF 154
D IAA+L LQ LD
Sbjct: 120 DMIAASLFLQAWLDARRE 137
>gi|240047431|ref|YP_002960819.1| putative Holliday junction resolvase [Mycoplasma conjunctivae
HRC/581]
gi|239985003|emb|CAT04996.1| Putative Holliday junction resolvase [Mycoplasma conjunctivae]
Length = 141
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAA 70
+ + I ++DLGTK G AI+DP A + Q L++ I
Sbjct: 1 MDVKKRILALDLGTKTCGFAITDPLAIIAQSLENFTYKNGDLNQIVLKIRDLQKQYEIGK 60
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G PL MNG++ P + + +P V DERL+T A ILI NVSRK
Sbjct: 61 IVLGYPLYMNGNKAPHTLLVEKMSSI-LKQNFQIPVVLQDERLSTSQAHDILILANVSRK 119
Query: 131 KRIQKVDSIAAALILQEVL 149
KR + +D +AA +IL+ L
Sbjct: 120 KRKKVIDKLAAQIILERYL 138
>gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 137
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG ++ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCSVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P + F + ++ + +P DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGSEQPLTQRAKKFAN-RLNGRFNLPVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|126441995|ref|YP_001060123.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
668]
gi|167012705|sp|A3NCQ2|RUVX_BURP6 RecName: Full=Putative Holliday junction resolvase
gi|126221488|gb|ABN84994.1| RNAse YqgF [Burkholderia pseudomallei 668]
Length = 146
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+A+ + R A + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ F + ++ + +P + DER ++V A+ L
Sbjct: 63 LVVGLPLHPDGAPHEMTQRAMRFGN-QLNGRFNLPVNWVDERYSSVEARAGLRARG---- 117
Query: 131 KRIQKVDSIAAALILQEVLDRISFLES 157
+VD+ AA +ILQ+ LD +
Sbjct: 118 DAADRVDAEAARVILQQYLDGLPDHHE 144
>gi|237798181|ref|ZP_04586642.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237806086|ref|ZP_04592790.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021033|gb|EGI01090.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331027199|gb|EGI07254.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 146
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + IT A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALITEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSR-RLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|190571530|ref|YP_001975888.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|190357802|emb|CAQ55258.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
Length = 155
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +KS+ ++ I +D+G K+IG+A SD + A R+ +++ L
Sbjct: 1 MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + +IGLP ++ E F + +I + V DE L+T A
Sbjct: 61 RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKKCK-VHIYLQDESLSTSLATH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L +S K + D IAA +ILQ LD+I+ ++
Sbjct: 120 ALKITGISITKSKKIDDKIAACIILQRTLDKINAIK 155
>gi|170719654|ref|YP_001747342.1| Holliday junction resolvase-like protein [Pseudomonas putida W619]
gi|169757657|gb|ACA70973.1| Holliday junction resolvase YqgF [Pseudomonas putida W619]
Length = 141
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVVTGQARELCTLKAQNGVPDWAQVEKLINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFAR-RLNGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|66043751|ref|YP_233592.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae B728a]
gi|257483597|ref|ZP_05637638.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289624696|ref|ZP_06457650.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289676346|ref|ZP_06497236.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
syringae FF5]
gi|298485002|ref|ZP_07003099.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|75503697|sp|Q4ZZ68|RUVX_PSEU2 RecName: Full=Putative Holliday junction resolvase
gi|63254458|gb|AAY35554.1| Conserved hypothetical protein 250 [Pseudomonas syringae pv.
syringae B728a]
gi|298160412|gb|EFI01436.1| Putative Holliday junction resolvase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330865802|gb|EGH00511.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330886262|gb|EGH20163.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
mori str. 301020]
gi|330899356|gb|EGH30775.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330951383|gb|EGH51643.1| Holliday junction resolvase-like protein [Pseudomonas syringae Cit
7]
gi|330972638|gb|EGH72704.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330977061|gb|EGH77021.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330984650|gb|EGH82753.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009672|gb|EGH89728.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 146
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSR-KLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAAALILQEVLDRISFL 155
+IAAAL+LQ LD L
Sbjct: 126 AIAAALLLQGWLDEHPEL 143
>gi|29375778|ref|NP_814932.1| Holliday junction resolvase-like protein [Enterococcus faecalis
V583]
gi|227518457|ref|ZP_03948506.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227552987|ref|ZP_03983036.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229546119|ref|ZP_04434844.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|229550308|ref|ZP_04439033.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|255973080|ref|ZP_05423666.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255976119|ref|ZP_05426705.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256618786|ref|ZP_05475632.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256762206|ref|ZP_05502786.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256852851|ref|ZP_05558221.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958695|ref|ZP_05562866.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256962207|ref|ZP_05566378.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256965397|ref|ZP_05569568.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257077951|ref|ZP_05572312.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257082840|ref|ZP_05577201.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257085538|ref|ZP_05579899.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086556|ref|ZP_05580917.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089613|ref|ZP_05583974.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415820|ref|ZP_05592814.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
gi|257419029|ref|ZP_05596023.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257422886|ref|ZP_05599876.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293383234|ref|ZP_06629150.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|293387611|ref|ZP_06632157.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294781118|ref|ZP_06746468.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300859927|ref|ZP_07106015.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|307268684|ref|ZP_07550053.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|307273508|ref|ZP_07554752.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|307274473|ref|ZP_07555656.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|307279022|ref|ZP_07560080.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|307288496|ref|ZP_07568482.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|307291186|ref|ZP_07571071.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|312899674|ref|ZP_07758998.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|312903954|ref|ZP_07763123.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|312907178|ref|ZP_07766169.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|312909797|ref|ZP_07768645.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|312951035|ref|ZP_07769943.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|62901023|sp|Q836B2|RUVX_ENTFA RecName: Full=Putative Holliday junction resolvase
gi|29343239|gb|AAO81002.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
V583]
gi|227074135|gb|EEI12098.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX0104]
gi|227177878|gb|EEI58850.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
HH22]
gi|229304571|gb|EEN70567.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
ATCC 29200]
gi|229308643|gb|EEN74630.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
TX1322]
gi|255964098|gb|EET96574.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968991|gb|EET99613.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256598313|gb|EEU17489.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256683457|gb|EEU23152.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711310|gb|EEU26348.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256949191|gb|EEU65823.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952703|gb|EEU69335.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256955893|gb|EEU72525.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256985981|gb|EEU73283.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256990870|gb|EEU78172.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256993568|gb|EEU80870.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994586|gb|EEU81888.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256998425|gb|EEU84945.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157648|gb|EEU87608.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160857|gb|EEU90817.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257164710|gb|EEU94670.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291079412|gb|EFE16776.1| putative Holliday junction resolvase [Enterococcus faecalis R712]
gi|291082943|gb|EFE19906.1| putative Holliday junction resolvase [Enterococcus faecalis S613]
gi|294451796|gb|EFG20248.1| RNAse YqgF [Enterococcus faecalis PC1.1]
gi|300850745|gb|EFK78494.1| RNAse YqgF [Enterococcus faecalis TUSoD Ef11]
gi|306497840|gb|EFM67372.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0411]
gi|306500571|gb|EFM69902.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0109]
gi|306504147|gb|EFM73359.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0860]
gi|306508867|gb|EFM77954.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX2134]
gi|306509847|gb|EFM78873.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX0855]
gi|306514996|gb|EFM83542.1| hypothetical protein TIGR00250 [Enterococcus faecalis TX4248]
gi|310626206|gb|EFQ09489.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 512]
gi|310630990|gb|EFQ14273.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0102]
gi|310632674|gb|EFQ15957.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0635]
gi|311289755|gb|EFQ68311.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
DAPTO 516]
gi|311293180|gb|EFQ71736.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0470]
gi|315027757|gb|EFT39689.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2137]
gi|315029152|gb|EFT41084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4000]
gi|315031532|gb|EFT43464.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0017]
gi|315035052|gb|EFT46984.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0027]
gi|315145514|gb|EFT89530.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX2141]
gi|315147685|gb|EFT91701.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX4244]
gi|315151387|gb|EFT95403.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0012]
gi|315154072|gb|EFT98088.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0031]
gi|315157359|gb|EFU01376.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0043]
gi|315158422|gb|EFU02439.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0312]
gi|315162577|gb|EFU06594.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0645]
gi|315165420|gb|EFU09437.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1302]
gi|315166586|gb|EFU10603.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1341]
gi|315575738|gb|EFU87929.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309B]
gi|315578303|gb|EFU90494.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0630]
gi|315579818|gb|EFU92009.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX0309A]
gi|327534828|gb|AEA93662.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
OG1RF]
gi|329576586|gb|EGG58091.1| RNAse H domain protein, YqgF family [Enterococcus faecalis TX1467]
Length = 140
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL--SFITTENIAAFIIG 74
I +D+G++ +G+A+SD A + + + + + F++G
Sbjct: 1 MRIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR
Sbjct: 61 LPKNMNNSIGPRAEASMAYGD-KIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA +ILQ LD S
Sbjct: 120 KVIDKLAAVMILQNYLDAHS 139
>gi|256852221|ref|ZP_05557607.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260661747|ref|ZP_05862658.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|282932651|ref|ZP_06338065.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|297205613|ref|ZP_06923009.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
gi|256615267|gb|EEU20458.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260547494|gb|EEX23473.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii 115-3-CHN]
gi|281303225|gb|EFA95413.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|297150191|gb|EFH30488.1| crossover junction endodeoxyribonuclease [Lactobacillus jensenii
JV-V16]
Length = 148
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISD A + + + + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKIVREYDVTGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKR 132
LP NM+GS+G V+ ++ + ++ K +P + DERLTT+ A ++LI+ RKKR
Sbjct: 61 LPKNMDGSDGASVNRSKNYGK-RLEEKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 120 KEVIDQMAAVLILQNYLD 137
>gi|57239291|ref|YP_180427.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|58579255|ref|YP_197467.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|62900902|sp|Q5HAW7|RUVX_EHRRW RecName: Full=Putative Holliday junction resolvase
gi|57161370|emb|CAH58293.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
gi|58417881|emb|CAI27085.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
Welgevonden]
Length = 156
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + + + + I +D G K+IG+A+SD A P VRK + L
Sbjct: 1 MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGSLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLPL++ G F + MI + + DER +T A +
Sbjct: 61 GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKKYA-INIYLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ N+ RK+ + D IAA LILQ+VLD
Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLD 149
>gi|152977888|ref|YP_001343517.1| Holliday junction resolvase-like protein [Actinobacillus
succinogenes 130Z]
gi|171472921|sp|A6VKT5|RUVX_ACTSZ RecName: Full=Putative Holliday junction resolvase
gi|150839611|gb|ABR73582.1| Holliday junction resolvase YqgF [Actinobacillus succinogenes 130Z]
Length = 140
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D GTK IG A+ A P + ++ + ++GL
Sbjct: 2 GMTVIAFDFGTKSIGCAVGQSITGTAQSLPAFKAQDGIPDWADIEKCLKEWKPDMVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + ++ + V + DERLTT A+ + + R + K
Sbjct: 62 PLNMDGTEQDLTRRARKFG-HRLNGRFGVKVAWQDERLTTTQARTEIFERGGYRALKKGK 120
Query: 136 VDSIAAALILQEVLDR 151
VDSI+A LIL+ +
Sbjct: 121 VDSISACLILESWFEE 136
>gi|282896769|ref|ZP_06304775.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
gi|281198178|gb|EFA73068.1| Holliday junction resolvase YqgF [Raphidiopsis brookii D9]
Length = 158
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+KR+G+A D A + RK + E+ + + ++G+P +
Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIQGLVEKRRVQILVVGIPYSR 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + + + +P + DERLT+ A+Q+L+ N S VD
Sbjct: 73 DGSIGEQARRIQKFAN-RLAKTLGLPVEYVDERLTSFQAEQMLLAENRSPSYNRGLVDRK 131
Query: 140 AAALILQEVLD 150
AA++ILQ+ LD
Sbjct: 132 AASIILQQWLD 142
>gi|240140069|ref|YP_002964546.1| putative Holliday junction resolvase [Methylobacterium extorquens
AM1]
gi|240010043|gb|ACS41269.1| putative Holliday junction resolvase [Methylobacterium extorquens
AM1]
Length = 165
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +DLGTK IG+A+SD GR+ A P + R K T +++ T + +IGLPL
Sbjct: 18 RLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVTLCATHAVGGLVIGLPL 77
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSEGPR S+R+F N+ +F+DERL+T + + L++ + SR +R + VD
Sbjct: 78 NMDGSEGPRAQSSRSFARNLKPLLPLP-VLFFDERLSTAAVTRTLLEADASRARRGELVD 136
Query: 138 SIAAALILQEVLD 150
+AAA ILQ LD
Sbjct: 137 KLAAAYILQSCLD 149
>gi|167920174|ref|ZP_02507265.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
BCC215]
Length = 146
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+A+ + R A + Q + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREQRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ F + ++ + +P + DER ++V A+ L
Sbjct: 63 LVVGLPLHPDGAPHEMTQRAMRFGN-QLNGRFNLPVSWVDERYSSVEARAGLRARG---- 117
Query: 131 KRIQKVDSIAAALILQEVLDRISFLES 157
+VD+ AA +ILQ+ LD +
Sbjct: 118 DAADRVDAEAARVILQQYLDGLPDHHE 144
>gi|315169885|gb|EFU13902.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1342]
Length = 140
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL--SFITTENIAAFIIG 74
I +D+G++ +G+A+SD A + + + + + F++G
Sbjct: 1 MRIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR
Sbjct: 61 LPKNMNNSIGPRAEASIAYGD-KIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA +ILQ LD S
Sbjct: 120 KVIDKLAAVMILQNYLDAHS 139
>gi|299140625|ref|ZP_07033763.1| Holliday junction resolvase [Prevotella oris C735]
gi|298577591|gb|EFI49459.1| Holliday junction resolvase [Prevotella oris C735]
Length = 144
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++D + A+ + + + +I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSLIDYLKD---YIAKEPVERIVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G + FV+ +P ++DER T+V A Q++ID V +K R +
Sbjct: 58 PTQPDGRPSENLVRVEQFVNRWRKLVPNIPIEYYDERFTSVLAHQVVIDSGVKKKVRKEN 117
Query: 136 ---VDSIAAALILQEVLDRISFLESSK 159
+D I+A +ILQ+ + + + K
Sbjct: 118 KGLIDEISATIILQDYMQYRHSMLNRK 144
>gi|331002893|ref|ZP_08326406.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413186|gb|EGG92560.1| hypothetical protein HMPREF0491_01268 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 143
Score = 124 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR---KKVTQTALELLSFITTENIAAFI 72
+ I +D G+K IG+AISD A P + R K+ ++ + + ++I +
Sbjct: 2 KERIMGLDYGSKTIGVAISDALGLTAQPLETIERSGENKLRRSLARIAEIVREKDIKKIV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP+NM+G G R T FV + +V +P V DERLTTV A +IL + V ++ R
Sbjct: 62 VGLPINMDGRSGERAALTLEFVE-KLKLRVDIPIVMQDERLTTVEADEILDESGVKKQDR 120
Query: 133 IQKVDSIAAALILQEVLDRIS 153
Q +D IAA +IL+E +++ +
Sbjct: 121 KQFIDQIAAGIILKEYMEKEN 141
>gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
MTCC 5463]
Length = 142
Score = 124 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SD A + K L + + F++G
Sbjct: 1 MRLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKR 132
LP NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 61 LPKNMDGTSGASVTRSKAYGK-RLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|167580846|ref|ZP_02373720.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis TXDOH]
Length = 146
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+AI + R A + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ + F + ++ + +P + DER ++V A+ L
Sbjct: 63 LVVGLPLHPDGAPHEMTQQAKRFGN-QLNGRFNLPVSWVDERYSSVEARAGLRARG---- 117
Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
+VD+ AA +ILQ+ LD +
Sbjct: 118 DAANRVDAEAARVILQQFLDGLP 140
>gi|53720302|ref|YP_109288.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
K96243]
gi|53725988|ref|YP_103583.1| Holliday junction resolvase-like protein [Burkholderia mallei ATCC
23344]
gi|67643857|ref|ZP_00442600.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|76810774|ref|YP_334541.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
1710b]
gi|121599348|ref|YP_992257.1| Holliday junction resolvase-like protein [Burkholderia mallei
SAVP1]
gi|124385182|ref|YP_001028699.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
10229]
gi|126450272|ref|YP_001081395.1| Holliday junction resolvase-like protein [Burkholderia mallei NCTC
10247]
gi|126454156|ref|YP_001067385.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
1106a]
gi|134280355|ref|ZP_01767066.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|167000842|ref|ZP_02266647.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|167720880|ref|ZP_02404116.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
DM98]
gi|167739861|ref|ZP_02412635.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
14]
gi|167817082|ref|ZP_02448762.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
91]
gi|167825492|ref|ZP_02456963.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
9]
gi|167846983|ref|ZP_02472491.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
B7210]
gi|167895564|ref|ZP_02482966.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
7894]
gi|167903961|ref|ZP_02491166.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
NCTC 13177]
gi|167912213|ref|ZP_02499304.1| Holliday junction resolvase-like protein [Burkholderia pseudomallei
112]
gi|217420341|ref|ZP_03451846.1| RNAse YqgF [Burkholderia pseudomallei 576]
gi|226193850|ref|ZP_03789452.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pakistan 9]
gi|242316862|ref|ZP_04815878.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106b]
gi|254175582|ref|ZP_04882242.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
10399]
gi|254180908|ref|ZP_04887506.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1655]
gi|254191753|ref|ZP_04898256.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pasteur 52237]
gi|254196116|ref|ZP_04902541.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
S13]
gi|254202273|ref|ZP_04908636.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|254207606|ref|ZP_04913956.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|254260688|ref|ZP_04951742.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710a]
gi|254298979|ref|ZP_04966429.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
406e]
gi|254356492|ref|ZP_04972768.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|62900955|sp|Q62I87|RUVX_BURMA RecName: Full=Putative Holliday junction resolvase
gi|62900957|sp|Q63RI0|RUVX_BURPS RecName: Full=Putative Holliday junction resolvase
gi|146325556|sp|Q3JPG2|RUVX_BURP1 RecName: Full=Putative Holliday junction resolvase
gi|167012701|sp|A3MMA9|RUVX_BURM7 RecName: Full=Putative Holliday junction resolvase
gi|167012702|sp|A2S9T0|RUVX_BURM9 RecName: Full=Putative Holliday junction resolvase
gi|167012703|sp|A1V204|RUVX_BURMS RecName: Full=Putative Holliday junction resolvase
gi|167012704|sp|A3NYG4|RUVX_BURP0 RecName: Full=Putative Holliday junction resolvase
gi|52210716|emb|CAH36700.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52429411|gb|AAU50004.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
23344]
gi|76580227|gb|ABA49702.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710b]
gi|121228158|gb|ABM50676.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei
SAVP1]
gi|124293202|gb|ABN02471.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
10229]
gi|126227798|gb|ABN91338.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106a]
gi|126243142|gb|ABO06235.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei NCTC
10247]
gi|134248362|gb|EBA48445.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|147746520|gb|EDK53597.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|147751500|gb|EDK58567.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|148025489|gb|EDK83643.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|157808954|gb|EDO86124.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
406e]
gi|157939424|gb|EDO95094.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pasteur 52237]
gi|160696626|gb|EDP86596.1| conserved hypothetical protein TIGR00250 [Burkholderia mallei ATCC
10399]
gi|169652860|gb|EDS85553.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
S13]
gi|184211447|gb|EDU08490.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1655]
gi|217395753|gb|EEC35770.1| RNAse YqgF [Burkholderia pseudomallei 576]
gi|225934155|gb|EEH30140.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
Pakistan 9]
gi|238525304|gb|EEP88732.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|242140101|gb|EES26503.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1106b]
gi|243063272|gb|EES45458.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|254219377|gb|EET08761.1| conserved hypothetical protein TIGR00250 [Burkholderia pseudomallei
1710a]
Length = 146
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+A+ + R A + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ F + ++ + +P + DER ++V A+ L
Sbjct: 63 LVVGLPLHPDGAPHEMTQRAMRFGN-QLNGRFNLPVSWVDERYSSVEARAGLRARG---- 117
Query: 131 KRIQKVDSIAAALILQEVLDRISFLES 157
+VD+ AA +ILQ+ LD +
Sbjct: 118 DAADRVDAEAARVILQQYLDGLPDHHE 144
>gi|315172764|gb|EFU16781.1| conserved hypothetical protein TIGR00250 [Enterococcus faecalis
TX1346]
Length = 140
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL--SFITTENIAAFIIG 74
I +D+G++ +G+A+SD A + + + + + F++G
Sbjct: 1 MRIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++ A+ I +P + DERLTTV A++ L++ N SR KR
Sbjct: 61 LPKNMNNSIGPRAEASMAYGD-KIQELFQLPVDYQDERLTTVQAERFLVEQANASRAKRK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+ +D +AA +ILQ LD S
Sbjct: 120 KVIDKLAAVMILQNYLDAHS 139
>gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT]
gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336]
gi|123327115|sp|Q0I1B3|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase
gi|189046099|sp|B0UWW2|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase
gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus
129PT]
gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336]
Length = 141
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ A P + L++ + ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE H R F + ++ + V DERLTT A+ + R + +KVD
Sbjct: 64 NMDGSEQDLTHLARKFAN-RLNGRFGVKVELQDERLTTKQARDEIFQRGGYRALKKEKVD 122
Query: 138 SIAAALILQEVLDR 151
SI+A LIL+ +
Sbjct: 123 SISACLILESWFEN 136
>gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
Length = 156
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
D+G RIG+A DP A P L R + + I+G
Sbjct: 2 RRGRRVGFDVGQVRIGVAQCDPEGILATPVETLWR--GESDIDDAAQIVRDCEAMEVIVG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+EG RA+ + + P DERL+TV+A LI + +K+
Sbjct: 60 LPLNMDGTEGASARDARAWAAKLAESVAPAPVRLVDERLSTVTAHGQLIAAGRNSRKQRS 119
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD AA +IL L+ +E G
Sbjct: 120 IVDQAAAVVILNTALE----MEQRTG 141
>gi|104783977|ref|YP_610475.1| Holliday junction resolvase-like protein [Pseudomonas entomophila
L48]
gi|95112964|emb|CAK17692.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 141
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCVLKAQNGVPDWNQVEKLIKEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSERAEKFAR-RLNGRYNLPVHTHDERLTTFEAKGEQMARGGRHGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3]
gi|124107440|sp|Q2J822|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase
gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3]
Length = 202
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AFI 72
+D+G+ R+G+A SDPG A P L R + ++ L I E A +
Sbjct: 21 SRPGVRIGVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRERQAVEVV 80
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP M+G EG V R + + +R VP F DERLTTV+A + + + V + R
Sbjct: 81 VGLPRQMSGQEGRAVRLVRQYAEVLAERIAPVPVRFVDERLTTVAAHRRMAERGVRSRAR 140
Query: 133 IQKVDSIAAALILQEVLDRIS 153
VD AA ILQ LD
Sbjct: 141 RSLVDQEAAVQILQHDLDSRR 161
>gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
Length = 173
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIA 69
+++P I +D+GT RIG+A+SDP R A P L R L +
Sbjct: 4 TAVRPGVRI-GVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAV 62
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP+++ G+ G + + VP DER TTV A + L ++
Sbjct: 63 EVVVGLPVSLRGTAGAAARDIAGYARRLATAVHPVPVRLVDERFTTVHADRRLQSAGLAG 122
Query: 130 KKRIQKVDSIAAALILQEVLD 150
++R VD +AAA++LQ+ LD
Sbjct: 123 RQRRAVVDQLAAAILLQDALD 143
>gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
Length = 163
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ N +D+G+ RIG+A SDP A P + R + L + +
Sbjct: 2 MMRNGIRLGVDVGSVRIGVARSDPSGLLATPVETVRRGRGD--LDRLAEIAAEYEVVEIV 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +++G EG + R F + R +P +DERLTTV+AQQ L V K +
Sbjct: 60 VGLPTSLSGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQ 119
Query: 133 IQKVDSIAAALILQEVLD 150
VD AA ++LQ LD
Sbjct: 120 RAVVDQAAAIVLLQAALD 137
>gi|260913265|ref|ZP_05919747.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
gi|260632852|gb|EEX51021.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
Length = 140
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG A+ R A P + + + ++GLPL
Sbjct: 4 TVLAFDFGTKSIGCAVGQSITRTAQALPAFKAQDGIPNWDAIEKCLNEWRPDLVVVGLPL 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E R F + ++ + V DERLTT A+ + + + KVD
Sbjct: 64 NMDGTEQELTTRARKFAN-RLNGRFGVQVELQDERLTTTEARAEIFERGGYKALNKSKVD 122
Query: 138 SIAAALILQEVLDR 151
I+A LIL+ ++
Sbjct: 123 GISACLILESWFEK 136
>gi|167749575|ref|ZP_02421702.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
gi|167657429|gb|EDS01559.1| hypothetical protein EUBSIR_00533 [Eubacterium siraeum DSM 15702]
gi|291557838|emb|CBL34955.1| conserved hypothetical protein TIGR00250 [Eubacterium siraeum
V10Sc8a]
Length = 149
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G GLA D + A P + + ++ + + ++G P
Sbjct: 1 MKIMAVDYGDAHTGLACCDRTQTLASPIGVIDERNFQTCVEKVAAAAVEYEVGEVVVGNP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+NMNG+ GPR R F + + +P V WDER TTV+A ++ D+N K+R + +
Sbjct: 61 INMNGTYGPRSEKCRMFADM-LQNFLEIPVVMWDERSTTVTAHNMMNDVNKRGKERKKVI 119
Query: 137 DSIAAALILQEVLDRISFL 155
D++AAA+ILQ LD + L
Sbjct: 120 DAVAAAVILQNYLDYKANL 138
>gi|148550072|ref|YP_001270174.1| Holliday junction resolvase-like protein [Pseudomonas putida F1]
gi|167036035|ref|YP_001671266.1| Holliday junction resolvase-like protein [Pseudomonas putida GB-1]
gi|325275084|ref|ZP_08141067.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
gi|148514130|gb|ABQ80990.1| Holliday junction resolvase YqgF [Pseudomonas putida F1]
gi|166862523|gb|ABZ00931.1| Holliday junction resolvase YqgF [Pseudomonas putida GB-1]
gi|313500972|gb|ADR62338.1| Putative Holliday junction resolvase [Pseudomonas putida BIRD-1]
gi|324099780|gb|EGB97643.1| Holliday junction resolvase-like protein [Pseudomonas sp. TJI-51]
Length = 141
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFAR-RLNGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|227877598|ref|ZP_03995652.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256844559|ref|ZP_05550045.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256849052|ref|ZP_05554485.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047534|ref|ZP_06020489.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|293381588|ref|ZP_06627575.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295692278|ref|YP_003600888.1| holliday junction resolvase [Lactobacillus crispatus ST1]
gi|312977881|ref|ZP_07789627.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
gi|227862792|gb|EEJ70257.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
JV-V01]
gi|256613637|gb|EEU18840.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256713828|gb|EEU28816.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572110|gb|EEX28675.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
gi|290921858|gb|EFD98873.1| RNAse H-fold protein YqgF [Lactobacillus crispatus 214-1]
gi|295030384|emb|CBL49863.1| Holliday junction resolvase [Lactobacillus crispatus ST1]
gi|310895188|gb|EFQ44256.1| putative Holliday junction resolvase [Lactobacillus crispatus
CTV-05]
Length = 142
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL--LSFITTENIAAFIIG 74
+ +D+G+K +G+AISD A + + + + F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDELGITAQKLETIQIDESRYNFGMRPLKKLVRQYEVDGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKR 132
LP NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 61 LPKNMDGTSGSSVARSKAYGK-RLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus
denitrificans ATCC 25259]
gi|146325622|sp|Q3SFS3|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase
gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC
25259]
Length = 145
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + + DLG KR G+A + AHP + + + A F++G
Sbjct: 6 THGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPALFVLG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +GSE R F ++ + P DERLT+ +A+ L + KK
Sbjct: 66 LPTRADGSENEMTRVARNFAR-RLESRFERPVFLIDERLTSATAESELHARGIHGKKNKA 124
Query: 135 KVDSIAAALILQEVLD 150
D++AA LILQ D
Sbjct: 125 LTDAVAAQLILQGFFD 140
>gi|114330469|ref|YP_746691.1| Holliday junction resolvase-like protein [Nitrosomonas eutropha
C91]
gi|122314517|sp|Q0AIU5|RUVX_NITEC RecName: Full=Putative Holliday junction resolvase
gi|114307483|gb|ABI58726.1| Holliday junction resolvase YqgF [Nitrosomonas eutropha C91]
Length = 157
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 5 LIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
I D+ + + + D G +RIG+AI + R AHP + + ++ I
Sbjct: 8 TISDMASVILS-GTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEKIAELIE 66
Query: 65 TENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
T ++GL ++ +G+E + F ++ + +P V DER TT A+ L +
Sbjct: 67 TWQPVLLVVGLSVHADGAEHEITRLCQRFAR-RLEGRFGIPVVMEDERYTTAIARLTLEE 125
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDR 151
+ ++ +K+ +D IAA ILQ D
Sbjct: 126 VGITGRKQRPMLDQIAAQHILQTFFDS 152
>gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila
DSM 44928]
gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM
44928]
Length = 171
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+D+GT RIG+A D A P + + + L + ++G
Sbjct: 16 RRGVRLGVDVGTVRIGVASCDRDGLLATPVETVKAEPRRASLDRLAALAAEYEAFEIVVG 75
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LP +++G EGP RA+ +++ R P DERL+TV+A Q L V KK
Sbjct: 76 LPRSLSGGEGPAAAKIRAYARDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKAKKGR 135
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ LD G
Sbjct: 136 SVVDQAAAVVILQNALDAERMSGRPPG 162
>gi|16332240|ref|NP_442968.1| Holliday junction resolvase-like-protein [Synechocystis sp. PCC
6803]
gi|6226451|sp|P74662|RUVX_SYNY3 RecName: Full=Putative Holliday junction resolvase
gi|1653870|dbj|BAA18780.1| sll1547 [Synechocystis sp. PCC 6803]
Length = 152
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ +D+G KRIG+A D A +VR Q ++ + N+ +
Sbjct: 1 MSKKVAALGLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP M G G + + F + ++ +P + DERL++V A+ L
Sbjct: 61 VGLPYTMAGEIGSQAKQVQKFARRVAEQLH-LPLEYMDERLSSVEAENQLKARKRFSSYD 119
Query: 133 IQKVDSIAAALILQEVLD-RISFLESS 158
+D AA +ILQ+ LD R S L+
Sbjct: 120 KGLIDQQAAEIILQQWLDLRRSHLQEG 146
>gi|58617309|ref|YP_196508.1| putative Holliday junction resolvase [Ehrlichia ruminantium str.
Gardel]
gi|62900898|sp|Q5FFQ2|RUVX_EHRRG RecName: Full=Putative Holliday junction resolvase
gi|58416921|emb|CAI28034.1| Putative Holliday junction resolvase [Ehrlichia ruminantium str.
Gardel]
Length = 156
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I + + + + I +D G K+IG+A+SD A P VRK + L
Sbjct: 1 MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + + +IGLPL++ G F + MI + + DER +T A +
Sbjct: 61 GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKKYA-INIYLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ N+ RK+ + D IAA LILQ+VLD
Sbjct: 120 VAKLANIKRKESQKIDDKIAAVLILQQVLD 149
>gi|88802640|ref|ZP_01118167.1| Holliday junction resolvase-like protein [Polaribacter irgensii
23-P]
gi|88781498|gb|EAR12676.1| Holliday junction resolvase-like protein [Polaribacter irgensii
23-P]
Length = 151
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M L ++ I +ID G KR G+A++D + A + ++
Sbjct: 1 MPCLK-NVFLQKQLYMARILAIDFGKKRTGIAVTDELQIIASGLTTVNTDELLPFL---K 56
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ + E + +IG P M+ S+ F+ + +P DER T+ A Q
Sbjct: 57 EYSSKEKVGLILIGHPKQMDNSDSESEVLILPFIKKLEKLLPQIPLKRVDERFTSKMAFQ 116
Query: 121 ILIDMNVSRKKRIQK--VDSIAAALILQEVL 149
+ID + +K+R K VD I+A +ILQ L
Sbjct: 117 TMIDGGMKKKQRRNKAMVDEISATIILQSYL 147
>gi|307543649|ref|YP_003896128.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
gi|307215673|emb|CBV40943.1| Holliday junction resolvase YqgF [Halomonas elongata DSM 2581]
Length = 143
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + I D GT+RIG+A+ + R A L + + + F+
Sbjct: 1 MSSQRLILGFDFGTRRIGVAVGNELTRSARALDPLPARDGIPDWTRVARLVDEWRPDLFV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+G+E R F + R +P DER +T A+ I D R
Sbjct: 61 VGLPLNMDGTESDMSTRARKFGKRLFGR-YGIPCEMADERGSTREAKAIARDAGHRGNYR 119
Query: 133 IQKVDSIAAALILQEVL 149
VD +AA LIL+ L
Sbjct: 120 DDGVDGLAAVLILEGWL 136
>gi|218440039|ref|YP_002378368.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7424]
gi|226725509|sp|B7KBE4|RUVX_CYAP7 RecName: Full=Putative Holliday junction resolvase
gi|218172767|gb|ACK71500.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7424]
Length = 151
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A + R + + +I ++GLP +M
Sbjct: 8 LGLDVGKKRVGVAGCDGLGLIATGLTTIERTHFIADVEKFKQLVEERDIKVLVVGLPYSM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+ G + + + + + + +P + DERLT+ A++ L VD
Sbjct: 68 NGTLGSQAKQVQNYA-TRLAKALQLPLEYVDERLTSYEAEEQLKAQKRFSTYNKGLVDRQ 126
Query: 140 AAALILQEVLDRISFLE 156
AAA+ILQ+ LD+ L
Sbjct: 127 AAAIILQQWLDQRRSLR 143
>gi|88658457|ref|YP_507277.1| hypothetical protein ECH_0460 [Ehrlichia chaffeensis str. Arkansas]
gi|146325573|sp|Q2GH06|RUVX_EHRCR RecName: Full=Putative Holliday junction resolvase
gi|88599914|gb|ABD45383.1| conserved hypothetical protein TIGR00250 [Ehrlichia chaffeensis
str. Arkansas]
Length = 156
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M +++ +K + + I +D G K+IG+A+SD A P VR+ + L
Sbjct: 1 MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S ++ + +IG PL ++G E F + +I R + DER +T A +
Sbjct: 61 SIFVENDVGSIVIGWPLELSGVENELCQKVVMFANRIITRYK-INICLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ N+ RK+ D I+A LILQ+VLD
Sbjct: 120 LAKLANIKRKESQAIDDKISAVLILQQVLD 149
>gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|62901002|sp|Q7N7G7|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase
gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 139
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GT+ IG AI A ++ + I+G
Sbjct: 2 NNRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWGQIEKLLKEWQPDLVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + + V DERLTTV A+ L D +
Sbjct: 62 LPLNMDGTEQFVTVQARKFAN-RLHGRFGVQVQLQDERLTTVEARAHLFDRGGYKALNKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
KVD+ +A +IL+ ++
Sbjct: 121 KVDATSAVIILESWFEQR 138
>gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10]
Length = 142
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SD A + K L + + F++G
Sbjct: 1 MRLLGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKR 132
LP NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 61 LPKNMDGTSGASVARSKAYGK-RLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|237813515|ref|YP_002897966.1| hypothetical protein GBP346_A3291 [Burkholderia pseudomallei
MSHR346]
gi|237503558|gb|ACQ95876.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
Length = 146
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+A+ + R A + + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ F + ++ + +P + DER ++V A+ L
Sbjct: 63 LVVGLPLHPDGAPHEMTQRAMRFGN-QLNGRFNLPVSWVDERYSSVEARAGLRARG---- 117
Query: 131 KRIQKVDSIAAALILQEVLDRISFLES 157
++D+ AA +ILQ+ LD +
Sbjct: 118 DAADRIDAEAARVILQQYLDGLPDHHE 144
>gi|83718957|ref|YP_442009.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis E264]
gi|167618948|ref|ZP_02387579.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis Bt4]
gi|257138192|ref|ZP_05586454.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis E264]
gi|146325558|sp|Q2SYJ0|RUVX_BURTA RecName: Full=Putative Holliday junction resolvase
gi|83652782|gb|ABC36845.1| conserved hypothetical protein TIGR00250, putative [Burkholderia
thailandensis E264]
Length = 146
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+AI + R A + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ F + ++ + +P + DER ++V A+ L
Sbjct: 63 LVVGLPLHPDGAPHEMTQRALRFGN-QLNGRFNLPVSWVDERYSSVEARAGLRARG---- 117
Query: 131 KRIQKVDSIAAALILQEVLDRIS 153
+VD+ AA +ILQ+ LD +
Sbjct: 118 DAANRVDAEAARVILQQFLDGLP 140
>gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC
51908]
gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908]
Length = 139
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+Q + D GTK IG+AI A+P + E+ I ++G
Sbjct: 2 SSQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE + F + I + V DERLTT A+ L +M +
Sbjct: 62 LPLNMDGSEQEMTQRAKKFAN-RISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+VD+++A LI++ + +
Sbjct: 121 QVDAMSAVLIVESYFESL 138
>gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium
kroppenstedtii DSM 44385]
gi|259495700|sp|C4LIV4|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase
gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii DSM
44385]
Length = 164
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-----VTQTALELLSFITTENI 68
+D+GT RIG+A+SDP A P + R + ++ ++
Sbjct: 14 PGPGRRLGLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDSIVQLAHDYSV 73
Query: 69 AAFIIGLPLNMNGSEG---PRVHSTRAFVHNMIDRK-VYVPFVFWDERLTTVSAQQILID 124
I+GLP ++GS G + ++R V VP + DER+TTV AQ L D
Sbjct: 74 VEVIVGLPRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMTTVMAQSNLHD 133
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRI 152
+S K+ +D AA ILQ LD+
Sbjct: 134 AGISVKEGRSVIDQAAAVEILQTWLDQR 161
>gi|26991673|ref|NP_747098.1| Holliday junction resolvase-like protein [Pseudomonas putida
KT2440]
gi|32130017|sp|Q88D32|RUVX_PSEPK RecName: Full=Putative Holliday junction resolvase
gi|24986772|gb|AAN70562.1|AE016699_3 conserved hypothetical protein TIGR00250 [Pseudomonas putida
KT2440]
Length = 141
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G+K+IG+A+ A L + ++ I A ++GLPLN
Sbjct: 7 LLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKLIAEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + +P DERLTT A+ + + R VD
Sbjct: 67 MDGTPSEMSARAEKFAR-RLNGRFNLPVHTHDERLTTFEAKGERMARGGQRGSYRDNPVD 125
Query: 138 SIAAALILQEVLD 150
+IAAAL+LQ L+
Sbjct: 126 AIAAALLLQGWLE 138
>gi|291458552|ref|ZP_06597942.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
gi|291419085|gb|EFE92804.1| putative Holliday junction resolvase [Oribacterium sp. oral taxon
078 str. F0262]
Length = 254
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G K IG+A++DP A P + R+ K+ ++ E+ + ++ ++ +I
Sbjct: 1 MRIMGLDYGAKTIGVAVTDPSGLIAQPLRTIFREREGKLRRSLQEIAALVSELSVERIVI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+ +EG R R F ++ ++V VP + DERLTT++A++IL + V R+++
Sbjct: 61 GLPLNMDETEGERAEKAREFAA-LLAKRVLVPIEWVDERLTTIAAREILDESGVPREEQK 119
Query: 134 QKVDSIAAALILQEV 148
+ +D +AA LIL+
Sbjct: 120 RMIDQVAAQLILETW 134
>gi|257792292|ref|YP_003182898.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
gi|317490213|ref|ZP_07948701.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
gi|257476189|gb|ACV56509.1| Holliday junction resolvase YqgF [Eggerthella lenta DSM 2243]
gi|316910707|gb|EFV32328.1| hypothetical protein HMPREF1023_02401 [Eggerthella sp. 1_3_56FAA]
Length = 138
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G R+G+A+SDPG R A P L +V A + + GLP
Sbjct: 1 MRIMALDIGETRVGVAVSDPGERVASPVAVLPASEVLNCAKPFQRALEDWEPELLLCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M G+EGP+ R I +P+ F DERL++ A++ L + ++ K K+
Sbjct: 61 YTMAGAEGPQAARIRK-AAKTISDACGIPYEFADERLSSQEAKRSLREKGMTEKAMRGKI 119
Query: 137 DSIAAALILQEVLDRISF 154
D IAA+L LQ LD
Sbjct: 120 DMIAASLFLQAWLDARRE 137
>gi|282858812|ref|ZP_06267957.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
gi|282588381|gb|EFB93541.1| RNAse YqgF [Prevotella bivia JCVIHMP010]
Length = 139
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP R A+ + ++ + ++I +E + +IG
Sbjct: 1 MGRILAIDYGKKRTGIAVTDPLRIIANGLATVPTSELYDYLV---AYIRSEAVDKIVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P+ NG F + + +P F+DER T+V A Q +I V +K R
Sbjct: 58 PIQANGQPSENFVRVEQFANRWKKVQPTIPIEFYDERFTSVIAHQAMIVGGVKKKTRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDFM 134
>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
Length = 138
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID G KR+GLAISD P L R ++ I E++ A ++GLP
Sbjct: 1 MRALGIDFGLKRVGLAISDRSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+M+G + R F + R+ +P DERLT+ A++ L ++ KR +
Sbjct: 61 LSMDGEDTLTTRQARNFAQ-SLGRRTDLPIHLADERLTSAQAEEELNAADLRGTKRKMAL 119
Query: 137 DSIAAALILQEVLDR 151
DS AA +IL+ L+
Sbjct: 120 DSQAAVIILRTWLEN 134
>gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica IFM
10152]
gi|62900947|sp|Q5YTK0|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase
gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 180
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTEN 67
ID+G+ RIG+A SDP A P + R K V+ + +
Sbjct: 16 PGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTVSPDIARIAEIVREYE 75
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I+GLP + G +G + AF + V DERLTTVSA + L D V
Sbjct: 76 AVEVIVGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDERLTTVSAARALRDSGV 135
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + Q +D AA ILQ LD S + S G
Sbjct: 136 RARGQRQVIDQAAAVSILQGWLDERSAVMRSVG 168
>gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
Length = 140
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GT+RIG+A+ P + + T +L + ++GLP
Sbjct: 7 RRVMAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+ SE R F + + +V DERLT+ A+ ++ SR R +
Sbjct: 67 LNMDDSENEMCVRARKFGK-RLHGRFHVTVEMVDERLTSYQAKGEVMAAGGSRNYRRDGI 125
Query: 137 DSIAAALILQEVLDR 151
D AA LIL+ ++
Sbjct: 126 DDRAAVLILETWFNQ 140
>gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium
genitalium ATCC 33030]
gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium
genitalium ATCC 33030]
Length = 167
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENI 68
ID+GT RIG+A SD A P + R + LL I+ +
Sbjct: 13 PGPGRRIGIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDRLLDIISEYDA 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP ++ G+ V + + R VP F DERLTTV A L V+
Sbjct: 73 VEVVVGLPRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEATNALRLSGVN 132
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
+ +D AA ILQ LD
Sbjct: 133 ARDGRAVIDQAAAVAILQSWLD 154
>gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
Length = 200
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA 70
+D+G+ R+G+A SDP A P L R + + EL + +
Sbjct: 38 PGRGVRIGVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVE 97
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLP ++G EG V R + + R VP DERLTTV A + + + + +
Sbjct: 98 VVVGLPRQLSGEEGEAVRRARQYAEVLSTRVAPVPVRLVDERLTTVVAHRRMAERGLRSR 157
Query: 131 KRIQKVDSIAAALILQEVLD 150
R + VD AA ILQ LD
Sbjct: 158 ARRELVDQEAAVQILQHHLD 177
>gi|158333266|ref|YP_001514438.1| Holliday junction resolvase-like protein [Acaryochloris marina
MBIC11017]
gi|189046084|sp|B0C512|RUVX_ACAM1 RecName: Full=Putative Holliday junction resolvase
gi|158303507|gb|ABW25124.1| holliday junction resolvase, putative [Acaryochloris marina
MBIC11017]
Length = 144
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
Q I +DLG +RIG+A D A + R T+ L + + ++
Sbjct: 1 MQRISALGLDLGHRRIGVAGCDGTGLIATGLTTIRRTSFTKDMEILRQIVVDRQVKTLVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP M G G + T+ I + + +P F DERLT+ A+ ++ + ++ ++
Sbjct: 61 GLPYTMKGEVGTQAQKTQKLAK-RIAKALDLPLDFIDERLTSHEAESMMREQRINPAEQK 119
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
+D AAALILQ LD+ +L S+
Sbjct: 120 GMIDRKAAALILQRWLDQKPWLSST 144
>gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
MED92]
gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
MED92]
Length = 158
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GT+RIG+A A P L+ K E+ I+ A ++G+PLN
Sbjct: 9 LAFDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGIPLNA 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ H R F + + +R P DERL+T A++I S R + VD I
Sbjct: 69 DGTISDMAHRARKFANRLHERYK-TPCFLMDERLSTAEAKEIHFASGGSDNFREESVDGI 127
Query: 140 AAALILQEVLD 150
AA LIL+ +
Sbjct: 128 AAQLILESWFN 138
>gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum
IMS101]
gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101]
Length = 149
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 15 PNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ I +D+G KR+G+A D A + R + +L + + I
Sbjct: 2 SQKRISALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLI 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP +MNGS G + + + + + + +P + DERLT+V A+++L N+S +
Sbjct: 62 VGLPYSMNGSIGFQAKKVQRYAQ-RLSQTLGLPLEYVDERLTSVQAEEMLKAANISPSQN 120
Query: 133 IQKVDSIAAALILQEVLDRISF 154
+D AAALILQ+ LD
Sbjct: 121 KALIDRKAAALILQQWLDERRE 142
>gi|282877696|ref|ZP_06286511.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
gi|281300268|gb|EFA92622.1| RNAse YqgF [Prevotella buccalis ATCC 35310]
Length = 138
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I SID G KR G+A++DP + A+ + + + ++ E + +IG P
Sbjct: 1 MRILSIDYGKKRTGIAVTDPLQIIANGLATVSTSTLFDYLKD---YVAREEVERIVIGKP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
+ NG + FV+ +P ++DER T+V A + ++ + +K R
Sbjct: 58 MQTNGKPSENMARVEQFVNRWRKAMPQIPIEYYDERFTSVLAHKAMLASGIGKKARQNKA 117
Query: 135 KVDSIAAALILQEVLDRIS 153
VD I+A +ILQ ++
Sbjct: 118 LVDEISATIILQSYMESKR 136
>gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
Length = 138
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + + + ++ ++ T E++ F+IGL
Sbjct: 1 MSRILAIDYGKKRTGIAVTDILQIIPNGLTTVATHELLNFL---KAYTTKEDVERFVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NG AF + +P F+DER T+ A Q ++ + +K+R +K
Sbjct: 58 PRQTNGKPSENFPRVEAFAKQLEQHFPTIPITFYDERYTSTLAHQAMLAGGLGKKRRQEK 117
Query: 136 --VDSIAAALILQEVLDR 151
VD I+A +ILQ ++
Sbjct: 118 ALVDEISACIILQSYMES 135
>gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM
17132]
gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM
17132]
Length = 140
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R GLA++DP + A + K Q L +I E + A ++GL
Sbjct: 1 MGRILAIDYGKVRTGLAVTDPLQIIATALETV---KTDQLINYLERYIQNEEVDALVLGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL++ + P R+F + D+ +P F DER T+ A LI V +K R
Sbjct: 58 PLSLRSEDTPTTTMVRSFGEVLKDKFPDLPLHFIDERFTSKMASDTLISSGVKKKDRKVK 117
Query: 134 QKVDSIAAALILQEVL 149
D I+A +ILQ L
Sbjct: 118 GNTDLISAVIILQSYL 133
>gi|269216087|ref|ZP_06159941.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
gi|269130346|gb|EEZ61424.1| putative Holliday junction resolvase [Slackia exigua ATCC 700122]
Length = 171
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
++D+G RIG+AISDP R A P L +V A + A + GLP
Sbjct: 20 RYMALDIGDARIGIAISDPAGRVASPLKVLPAAEVLGHAASFRMLVEDWMPDALVCGLPF 79
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G +GP+ S + I + +P F DERL++ A++ L + + KVD
Sbjct: 80 TLAGEQGPQAASLKERAQ-RIAKACDLPLYFSDERLSSSEAKRFLREGGYDERAMRGKVD 138
Query: 138 SIAAALILQEVLDRISFLESSKG 160
IAA++ LQ LD +SKG
Sbjct: 139 MIAASIFLQSWLDSNP---ASKG 158
>gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis
L2TR]
gi|62900918|sp|Q5QVM3|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase
gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR]
Length = 144
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P + K+ + ++GL
Sbjct: 1 MSTVIGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E P + F + + + +P F DERLT+ SA++ L RK +
Sbjct: 61 PLNMDGTEQPLTQKAKKFGN-RLHGRFGLPVAFQDERLTSTSARESLFAEGGFRKLKKGA 119
Query: 136 VDSIAAALILQEVLD 150
VDS AA +I+++ ++
Sbjct: 120 VDSQAALIIVEDFMN 134
>gi|302877381|ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
ES-2]
gi|302580170|gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans
ES-2]
Length = 170
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GT+RIG+A+ + A P + +K + + A ++GLP
Sbjct: 17 GTLLAFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLP 76
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +GS + F + + + + DER ++++A + L V + + +
Sbjct: 77 CSDDGSPHELTALCQRFAK-RLHGRYGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALI 135
Query: 137 DSIAAALILQEVLDR 151
D AA ILQ D
Sbjct: 136 DQYAAQQILQAYFDE 150
>gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Lyngbya majuscula 3L]
Length = 151
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I +DLG+KRIG+A D A + R + +L + T + ++
Sbjct: 1 MERISALGLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +M+G+ G + + + + +P + DERLT+ A+ L S +
Sbjct: 61 GLPYSMDGTLGFQARKVQKLA-TRLAAALQLPVEYIDERLTSWEAESRLKASKRSLTQNK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D AAA+ILQ+ LDR
Sbjct: 120 GLIDRHAAAIILQQWLDRRR 139
>gi|281423117|ref|ZP_06254030.1| putative Holliday junction resolvase [Prevotella oris F0302]
gi|281402453|gb|EFB33284.1| putative Holliday junction resolvase [Prevotella oris F0302]
Length = 144
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++D + A+ + + + +I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATVSTSSLIDYLKD---YIAKEPVERIVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G + FV+ +P ++DER T+V A Q++ID V +K R +
Sbjct: 58 PTQPDGRPSENLARVEQFVNRWRKLVPNIPIEYYDERFTSVIAHQVVIDSGVRKKVRKEN 117
Query: 136 ---VDSIAAALILQEVLDRISFLESSK 159
+D I+A +ILQ+ + + + K
Sbjct: 118 KGLIDEISATIILQDYMQYRHSMLNRK 144
>gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
Length = 145
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
LK + D GTK IG+A A P + + I +
Sbjct: 5 LKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMPDLIV 64
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GSE P + F + ++ + V DERLTT SA++ + +
Sbjct: 65 VGLPLNMDGSEQPITQRAKKFAN-RLNGRFGVKVALQDERLTTASAKEFIFTHGGYKALE 123
Query: 133 IQKVDSIAAALILQEVLDR 151
K+DS++AALIL+ ++
Sbjct: 124 KGKIDSVSAALILESWMEN 142
>gi|238063897|ref|ZP_04608606.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
gi|237885708|gb|EEP74536.1| Holliday junction resolvase yqgF [Micromonospora sp. ATCC 39149]
Length = 153
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENIAAFII 73
+D+G R+G+A SDP A P L R V EL++ I ++
Sbjct: 10 LGVDVGQVRVGVARSDPHGVLATPLVTLARDLTTADDAVPSDMAELVALIAEHECVEVVV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+N+ G GP + +A+ + D VP DER++TV A + L + V K+R
Sbjct: 70 GLPINLAGQHGPAARNVKAYADRLADVIAPVPVTLTDERMSTVVASRRLAEGGVRGKRRR 129
Query: 134 QKVDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 130 AVVDQAAAVEILQSWLD 146
>gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners AB-1]
gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners ATCC
55195]
gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII 60-B]
gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
Length = 143
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SD A + K + + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAVSDALGITAQEVETIPIDESKYNFGMRRVKQLVREYEVSGFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVS-RKKR 132
LP NM+G+ G + + K +P + DERLTT+ A++IL+ + +S R R
Sbjct: 61 LPKNMDGTCGESAQRCLDYGE-RLKAKFKIPVYYSDERLTTIQAKRILVEEAGISDRVAR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ L+
Sbjct: 120 KKIIDQMAAVLILQNFLE 137
>gi|238855617|ref|ZP_04645918.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|260665323|ref|ZP_05866171.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
gi|282933009|ref|ZP_06338403.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
gi|313473102|ref|ZP_07813586.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|238831761|gb|EEQ24097.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
gi|239528661|gb|EEQ67662.1| putative Holliday junction resolvase [Lactobacillus jensenii 1153]
gi|260560827|gb|EEX26803.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
jensenii SJ-7A-US]
gi|281302863|gb|EFA95071.1| putative Holliday junction resolvase [Lactobacillus jensenii 208-1]
Length = 148
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
+ +D+G+K +G+AISD A + + + + ++ F++G
Sbjct: 1 MRLLGLDVGSKTVGVAISDELGLTAQKLETISIDETRHNFGMKAIKKLVREYDVTGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKR 132
LP NM+GS+G V ++ + ++ K +P + DERLTT+ A ++LI+ RKKR
Sbjct: 61 LPKNMDGSDGVSVSRSKNYGK-RLEDKFSLPVAYSDERLTTIEADRVLIEEAEIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
+ +D +AA LILQ LD
Sbjct: 120 KEVIDQMAAVLILQNYLD 137
>gi|170077568|ref|YP_001734206.1| Holliday junction resolvase-like protein [Synechococcus sp. PCC
7002]
gi|226695310|sp|B1XJ08|RUVX_SYNP2 RecName: Full=Putative Holliday junction resolvase
gi|169885237|gb|ACA98950.1| YqgFc, likely ribonuclease with RNase H fold; putative Holliday
junction resolvase [Synechococcus sp. PCC 7002]
Length = 144
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R + + +I +I ++GLP M
Sbjct: 7 LGLDIGRKRIGVAGCDGLGLLATALTTIQRTTLEADLAAIAHWIEQRHIQVLVVGLPYAM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + T+ F + +P + DERLT+V A+ L +++ VD
Sbjct: 67 DGSLGKQAKQTQKFAR-KLAEAFGLPIEYVDERLTSVEAENQLKAEKQYDRQQKGLVDQR 125
Query: 140 AAALILQEVLD 150
AA +ILQ+ L+
Sbjct: 126 AAQIILQQWLE 136
>gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina
NCIMB 400]
gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB
400]
Length = 139
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D GTK IG+AI A P + ++ + ++GLP
Sbjct: 4 QTVLGFDYGTKSIGVAIGQAITASATPLLSIKAVDGIPNWDDIDKLLKEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F + I+ + V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQEMTQRARKFAN-RINGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIIESYFEN 137
>gi|297621335|ref|YP_003709472.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
86-1044]
gi|297376636|gb|ADI38466.1| Putative Holliday junction resolvase [Waddlia chondrophila WSU
86-1044]
Length = 148
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-------TALELLSFITTENI 68
I ID G KRIGLAISD A K + LE +
Sbjct: 2 KTRIIGIDYGMKRIGLAISDETHLIASAIETFEASKKMEETVAALVKRLEEHQKEKGYEL 61
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++G PL MNG G F + + + +P + WDERLT+V A++ +++ + +
Sbjct: 62 KEIVVGFPLKMNGKAGFISDEVTLFAE-TLSKALSIPIIKWDERLTSVQAERAMMEGSYN 120
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFL 155
RKKR +K+D I+A +ILQ LD + +
Sbjct: 121 RKKRTKKLDQISAVIILQNYLDSKNLI 147
>gi|307256259|ref|ZP_07538043.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865223|gb|EFM97122.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 137
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ I + D GT IG A+ A P + ++ I ++GLP
Sbjct: 3 RTILAFDFGTYSIGCAVGQDITGTAQGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE P + F + ++ + + DERLTTVSA+ + + + + KV
Sbjct: 63 LNMDGSEQPLTQRAKKFAN-RLNGRFNLLVELQDERLTTVSAKAEIFERGGYKALKKDKV 121
Query: 137 DSIAAALILQEVLD 150
DSI+A LIL+ +
Sbjct: 122 DSISACLILESWFE 135
>gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii
ATCC 33406]
gi|118597208|sp|Q11X87|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase
gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC
33406]
Length = 152
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D GTKRIG+A +DP + A+ + K V ++ TE + AF++GL
Sbjct: 1 MARILAFDFGTKRIGIASTDPMQIIANALDTVHPKDVVVYL---KKYLNTEPVEAFVVGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + E + +AF++ + P DER T+ A ++ VS+K R K
Sbjct: 58 PRTLQNEESSNAANVKAFINLIKKNFPQTPIYGVDERFTSSMAFDTMLAGGVSKKGRRDK 117
Query: 136 --VDSIAAALILQEVLDR 151
+D I+A +ILQ +++
Sbjct: 118 ATIDKISATIILQSFMEQ 135
>gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens
BL2]
Length = 150
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 1/141 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+ RIG+A SDP A P + R L I +IG P ++
Sbjct: 1 MGLDIGSVRIGVAASDPDGILATPLTVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS + F I P DER TTV A L + ++R + VD+
Sbjct: 61 DGSARAAAATALEFAK-RISAATATPIRLVDERFTTVEAHHALAAAGKNSRQRREIVDAQ 119
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +ILQ L+ G
Sbjct: 120 AAVIILQNALEYEHNTGQPAG 140
>gi|42520048|ref|NP_965963.1| hypothetical protein WD0143 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99034738|ref|ZP_01314668.1| hypothetical protein Wendoof_01000517 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|62900994|sp|Q73IL4|RUVX_WOLPM RecName: Full=Putative Holliday junction resolvase
gi|42409785|gb|AAS13897.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 155
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L
Sbjct: 1 MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +IGLPL M+ E + F + +I + V DE +T A
Sbjct: 61 RIFKENESGSMVIGLPLKMDEQETKWCKTIIQFANKIIKKYK-VNIYLQDESFSTSIATH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L +S K + D I+A +ILQ LD+I+ ++
Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155
>gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Eubacterium saburreum DSM 3986]
gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Eubacterium saburreum DSM 3986]
Length = 145
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ---TALELLSFITTENIA 69
+ + I +D G+K IG+AISD A P + R K + + ++ + +NI
Sbjct: 1 MDLKERIMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIK 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLP+NMNG G RV T FV + ++V VP + DERLTTV A +IL + V +
Sbjct: 61 KIVVGLPVNMNGRRGKRVSLTLEFVE-KLKQRVDVPIIMQDERLTTVEADEILDESGVKK 119
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ R Q +D +AA +IL+E +++ +
Sbjct: 120 ENRKQFIDMVAAGIILREYMEKEN 143
>gi|253990752|ref|YP_003042108.1| Holliday junction resolvase-like protein [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 139
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GT+ IG AI A ++ + I+G
Sbjct: 2 SNRTIMAFDFGTRSIGAAIGQEITGTARALTSFKATDGIPNWQQIEKLLKEWQPDLVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + + V DERLTTV A+ L D +
Sbjct: 62 LPLNMDGTEQFVTIQARKFAN-RLHGRFGVQVELQDERLTTVEARAHLFDRGGYKALDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
KVD+ +A +IL+ ++
Sbjct: 121 KVDATSAVIILESWFEQ 137
>gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
Length = 137
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR G+A++DP + A + ++ + ++ E + +IG
Sbjct: 1 MTRILSIDYGRKRTGVAVTDPLQLIAGGLATVATSELFNYLM---QYVQHEEVERIVIGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P+ NG + FV +P ++DER T+V AQ+++ID + +K R
Sbjct: 58 PMQTNGQPSENLQRVEQFVDRWRKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +IL++ +
Sbjct: 118 ALVDEISATIILEDWM 133
>gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 148
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA++DP R + ++ Q E +I E + ++G
Sbjct: 1 MGRILAIDYGKKRTGLAVTDPLRITPGGLATVASSELLQYLSE---YIPREGVDLVVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN E + FV + R + V++DER T+ AQ+ +++ + ++KR K
Sbjct: 58 PRQMNNEESESMRYIGPFVAKLEKRFPQLRIVYYDERFTSCLAQKTILESGIGKQKRRNK 117
Query: 136 --VDSIAAALILQEVLDRISF 154
VD ++A +ILQ ++ +++
Sbjct: 118 ALVDEVSAIIILQSYMESLAY 138
>gi|327398201|ref|YP_004339070.1| Holliday junction resolvase [Hippea maritima DSM 10411]
gi|327180830|gb|AEA33011.1| Holliday junction resolvase [Hippea maritima DSM 10411]
Length = 136
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ID GTK+IG+AISD A P + + ++ + I ++G+P
Sbjct: 1 MRILGIDYGTKKIGIAISDETNTIALPHGVIDTD--GEYLDKIKEIVKKNKITRIVVGMP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-RKKRIQK 135
+ + G +G R T F++ + + + V WDERL+T +++IL NV RK + +
Sbjct: 59 ITLKGEKGKRALETEDFINELACKIENIEIVEWDERLSTRFSERILNKANVKGRKNKKKV 118
Query: 136 VDSIAAALILQEVLDRI 152
+D IAA ILQ LD +
Sbjct: 119 IDKIAATFILQGYLDSL 135
>gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
Length = 139
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
+DLG+ G++ SD A + K ++L + E ++
Sbjct: 1 MTRYLGLDLGSVTCGVSFSDT-GFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVL 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL +N GPR F +++++ +P DER TT A+ IL++ +VSRKKR
Sbjct: 60 GLPLLLNDDVGPRAQICLEFGE-VLEQESGIPVKMQDERFTTAVAESILLEADVSRKKRK 118
Query: 134 QKVDSIAAALILQEVLDR 151
+K+D +AA ILQ LDR
Sbjct: 119 KKIDQLAAVQILQTWLDR 136
>gi|145298211|ref|YP_001141052.1| Holliday junction resolvase-like protein [Aeromonas salmonicida
subsp. salmonicida A449]
gi|167012688|sp|A4SK82|RUVX_AERS4 RecName: Full=Putative Holliday junction resolvase
gi|142850983|gb|ABO89304.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 140
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I D GTK IG+AI A P + ++ + ++G
Sbjct: 2 SSRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGVPNWDDIEKLLKEWQPDLLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + + F DERLTT A+ L + +
Sbjct: 62 LPLNMDGTEQEITVRARKFGN-RLHGRFGKQVEFKDERLTTTDARARLFERGGYKALDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD ++A LIL+ ++
Sbjct: 121 SVDGVSAQLILEAWMEE 137
>gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4]
gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7]
gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3]
gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4]
gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7]
gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3]
Length = 141
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+AI A P L E+ I ++GLP
Sbjct: 4 KTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E H R F + ++ K V V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQEMTHRARKFAN-RLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIVESYFEN 137
>gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
Length = 149
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID G KRIG+A+SDP A + R + E+ EN+ ++GLPL+
Sbjct: 3 VMGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLH 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
M+G EG R I+ +P DERLT+V A++ L++ K +
Sbjct: 63 MSGYEGEEAVRARELAK-QIETATGLPVELVDERLTSVEAERRLLESRRKLGKLGRKKLA 121
Query: 136 VDSIAAALILQEVLDR 151
+D+ AAA++LQ+ LD+
Sbjct: 122 IDAEAAAVLLQDYLDQ 137
>gi|332299917|ref|YP_004441838.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
20707]
gi|332176980|gb|AEE12670.1| Holliday junction resolvase [Porphyromonas asaccharolytica DSM
20707]
Length = 141
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR GLA++DP + + Q L ++ E + ++G
Sbjct: 1 MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIVLGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P M+ + + +A + + + DER T+V AQQ + + + +++R
Sbjct: 58 PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
VD ++A +ILQ L+ +S L
Sbjct: 118 KGLVDRVSATIILQSYLESLSML 140
>gi|329120302|ref|ZP_08248970.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
ATCC BAA-1200]
gi|327462643|gb|EGF08966.1| crossover junction endodeoxyribonuclease [Neisseria bacilliformis
ATCC BAA-1200]
Length = 153
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G KRIG+A AHP L Q + + I ++G
Sbjct: 8 PRGTCLAFDFGEKRIGVAQGSAETATAHPLSTLSGGSNEQKFAAIAALIREWQPDYLVVG 67
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F + +R +P F DER T++ A+ +L + V +K+
Sbjct: 68 LPVHSDGTEHELTRLARKFGRRLHERFA-LPVYFADERHTSLLAESLLAEAQVFGRKQKS 126
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+DS+AA +IL + D + + G
Sbjct: 127 VLDSVAAQVILFDFFDSGAVERLNGG 152
>gi|117620774|ref|YP_857631.1| hypothetical protein AHA_3131 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|167012687|sp|A0KMY0|RUVX_AERHH RecName: Full=Putative Holliday junction resolvase
gi|117562181|gb|ABK39129.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 140
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I D GTK IG+AI A P + ++ + ++G
Sbjct: 2 SSRSIMGFDYGTKSIGVAIGQELTGTAQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + + F DERLTT A+ L + R
Sbjct: 62 LPLNMDGTEQEITVRARKFGN-RLHGRFGKQVEFKDERLTTTDARARLFERGGYRALEKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD ++A LIL+ ++
Sbjct: 121 SVDGVSAQLILEAWMEE 137
>gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
Length = 153
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D GTK IGLAI A+P L K ++ I +IGLPLN
Sbjct: 14 VLCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLN 73
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS + F + + + +P DERL++ A+ +I SR + VDS
Sbjct: 74 MDGSFSELSRRAKKFAN-RLHGRFGLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVDS 132
Query: 139 IAAALILQEVL 149
+AA +IL+ L
Sbjct: 133 LAAKIILESWL 143
>gi|120436620|ref|YP_862306.1| Holliday junction resolvase-like protein [Gramella forsetii KT0803]
gi|167012728|sp|A0M3P4|RUVX_GRAFK RecName: Full=Putative Holliday junction resolvase
gi|117578770|emb|CAL67239.1| conserved hypothetical protein, UPF0081 [Gramella forsetii KT0803]
Length = 135
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D GTKR G+A++D + A + ++ + + + E + ++G
Sbjct: 1 MARILALDYGTKRTGVAVTDELKMIASGLTTVQTPELIKFLED---YFKNEKVERVLVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ + + F+ + + +P DER T+ A Q +ID + +KKR K
Sbjct: 58 PKRMDDTPSQSEVHIQEFLKEFVKKFPEMPMERVDERFTSKMAVQSMIDGGLKKKKRRDK 117
Query: 136 --VDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 118 ALVDEISATIILQTWL 133
>gi|109897479|ref|YP_660734.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
gi|109699760|gb|ABG39680.1| Holliday junction resolvase YqgF [Pseudoalteromonas atlantica T6c]
Length = 143
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A+ A P + + ++GLP
Sbjct: 7 RTVLAFDFGTKSIGVAVGQEVTGTASPLDAIKAVDGIPNWDVVAKVFEQWQPDLALVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+ + + F + + K VP DERLTTV A+ L +M +K QK+
Sbjct: 67 LNMDGTFQQVTFAAKKFGN-RLSAKYRVPVETVDERLTTVDAKARLFEMGGFKKLDKQKI 125
Query: 137 DSIAAALILQEVLDR 151
DS +A LI + +++
Sbjct: 126 DSASACLIFESWVEQ 140
>gi|282889573|ref|ZP_06298114.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500496|gb|EFB42774.1| hypothetical protein pah_c002o006 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 155
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 8/141 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENI------A 69
+ I S+D G RIG+AISD + A + KKV +T +L+ I
Sbjct: 7 KRIVSLDYGLARIGIAISDESQTIASSLKTVAAEKKVERTVAKLVEEINAHQQRLACEIE 66
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
++GLPL M+G +G + FV +P V WDERLTTV A++ L + + +R
Sbjct: 67 EIVVGLPLLMSGKKGFQADEVLHFVELF-KAATPIPIVTWDERLTTVQAERALREGSFNR 125
Query: 130 KKRIQKVDSIAAALILQEVLD 150
KKR + +D++AA LILQ LD
Sbjct: 126 KKRSKVIDAVAAVLILQNYLD 146
>gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 138
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR+GLA++DP + A + K V Q + + E I F++G+
Sbjct: 1 MPRIVAIDYGTKRVGLAVTDPLKIIATALDTVHSKDVIQFLKD---YHEQEGIELFVVGM 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++G+E AF++ + DER T+ A +I ++K R +K
Sbjct: 58 PKRLDGTESHATKHVEAFLNLLKKNFPDTDIETHDERFTSKIALNAMIAGGTTKKYRREK 117
Query: 136 --VDSIAAALILQEVLDRI 152
+D ++A +ILQ L+++
Sbjct: 118 GNIDKVSAVVILQSYLEKM 136
>gi|157372262|ref|YP_001480251.1| Holliday junction resolvase-like protein [Serratia proteamaculans
568]
gi|167012758|sp|A8GJ33|RUVX_SERP5 RecName: Full=Putative Holliday junction resolvase
gi|157324026|gb|ABV43123.1| Holliday junction resolvase YqgF [Serratia proteamaculans 568]
Length = 140
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GTK IG AI A + + ++ + ++G
Sbjct: 2 TNRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + + V DERL+TV A+ L D R
Sbjct: 62 LPLNMDGTEQLVTEQARKFAN-RLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VDS +A +IL+ +R
Sbjct: 121 SVDSASAVVILESWFER 137
>gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
Length = 147
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE-NIAAFII 73
ID+G R+G+A SDP A P + R+ AL + I E + +I
Sbjct: 2 RRGRRLGIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELVI 61
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P +++G R F ++DR +P + DER TT A +L + + K+R
Sbjct: 62 GDPTSLDGKARQSADKARRFAQKIVDRT-GLPVRYVDERFTTTQAHLMLQEAGKTSKQRR 120
Query: 134 QKVDSIAAALILQEVLDRISFLESS 158
+ VD+ AA +ILQ LD ++ ++S
Sbjct: 121 ETVDAQAAVVILQTALDALAREDNS 145
>gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
gi|210159041|gb|EEA90012.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
Length = 142
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G R G+A+SD R A P L +V A + + GLP M
Sbjct: 4 LALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQTM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EGP+ R I R +P F DERL++ A++IL + +S K+ KVD I
Sbjct: 64 AGEEGPQAARVREVAG-RISRVTGLPVEFIDERLSSTEAKRILREQGLSEKQMRGKVDMI 122
Query: 140 AAALILQEVLDRISFLESSKG 160
+A+L LQ LD S + +G
Sbjct: 123 SASLFLQAWLDAQS-RKEDRG 142
>gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis
HAW-EB3]
gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3]
Length = 139
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+AI A+P + E+ I ++GLPL
Sbjct: 5 TVLGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE + F + I+ + V DERLTT A+ L +M + +VD
Sbjct: 65 NMDGSEQEMTQRAKKFAN-RINGRFGVKIATQDERLTTADAKARLFEMGGYKALTKGQVD 123
Query: 138 SIAAALILQEVLDRI 152
+++A LI++ + +
Sbjct: 124 AMSAVLIIESYFENL 138
>gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
Length = 149
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 3/143 (2%)
Query: 10 VKSLKPNQ--PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
K++KP + D GTK IG+AI A + + ++ +
Sbjct: 3 KKTVKPQGERTVMGFDFGTKSIGIAIGQELTGSATSLKAVKAQDGIPNWDDIAVQVKEWQ 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLNM+G+ + F + + + DERLTT A+ L +
Sbjct: 63 PDLMVVGLPLNMDGTSQEVTFKAKKFAN-RLHNHYGIAVHTQDERLTTADAKARLFERGG 121
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
+ VD+++A +IL+ +
Sbjct: 122 YKNLGKGNVDNMSAVIILESFFE 144
>gi|298368767|ref|ZP_06980085.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282770|gb|EFI24257.1| Holliday junction resolvase [Neisseria sp. oral taxon 014 str.
F0314]
Length = 153
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A D +HP + + + F++G
Sbjct: 5 PAGTTLAFDFGEVRIGVAQGDAEVGLSHPLTTVTGGSNEVKFEAVAKLVDEWQPVQFVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E +R F + + +P + DER++++ A+ +L + V +K+
Sbjct: 65 LPVHADGTEHELTRLSRKFGR-RLQGRFKLPVYWVDERMSSLYAESLLAEAQVFGRKQKA 123
Query: 135 KVDSIAAALILQEVLD 150
+D +AA ILQ +
Sbjct: 124 VLDQVAAQAILQGFFE 139
>gi|270263056|ref|ZP_06191326.1| DNA integration/recombination/invertion protein [Serratia odorifera
4Rx13]
gi|270042744|gb|EFA15838.1| DNA integration/recombination/invertion protein [Serratia odorifera
4Rx13]
Length = 140
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GTK IG AI A + + ++ + ++G
Sbjct: 2 TNRTIIAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + + V DERL+TV A+ L D R
Sbjct: 62 LPLNMDGTEQLVTDQARKFAN-RLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKG 120
Query: 135 KVDSIAAALILQEVLDRIS 153
VDS +A +IL+ +R
Sbjct: 121 SVDSASAVVILESWFERQR 139
>gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis
SB2B]
gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B]
Length = 139
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A+P + ++ I +IGL
Sbjct: 1 MSTVMGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + ++ + V DERLTT A+ L ++ + +
Sbjct: 61 PLNMDGTEQEMTQRARKFAN-RLNGRFGVKIATQDERLTTADAKARLFELGGFKALTKGQ 119
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LI++ +
Sbjct: 120 VDAVSAVLIVESYFEN 135
>gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
Length = 170
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+D+G R+G+A+SDPG A P L R +K + +L+ ++ ++GL
Sbjct: 15 GRRLGVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLAAEHDVVEVVVGL 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + G GP + A+ + +R +P DERLTTV+A ++L V KK+
Sbjct: 75 PRTLAGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLAQRGVRGKKQRAV 134
Query: 136 VDSIAAALILQEVLD 150
VD AA ILQ LD
Sbjct: 135 VDQAAAVEILQSWLD 149
>gi|332704470|ref|ZP_08424558.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
Length = 163
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ID G KR+GLA++D G R A PRP L R E+ E + A ++GLP+
Sbjct: 30 RLLGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGLPI 89
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
M+G E R I K + DERLT+ AQ L + VS KK K+D
Sbjct: 90 AMDGEETDLSRQVRNLAR-KITSKTGLKVHLMDERLTSAEAQARLREAGVSSKKMKGKLD 148
Query: 138 SIAAALILQEVL 149
S AA LIL+ L
Sbjct: 149 SGAAVLILEAYL 160
>gi|330830729|ref|YP_004393681.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
gi|328805865|gb|AEB51064.1| Holliday junction resolvase-like protein [Aeromonas veronii B565]
Length = 140
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I D GTK IG+AI A P L E+ + ++G
Sbjct: 2 SSRSIMGFDYGTKSIGVAIGQELTGTAQPLRALKANDGIPNWDEIEKLLKEWQPDLLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G++ R F + + + P F DERLTT A+ L + R
Sbjct: 62 LPLNMDGTDQEITVRARKFGN-RLHGRFGKPVEFKDERLTTTDARARLFERGGYRALEKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD ++A LI++ ++
Sbjct: 121 SVDGVSAQLIVEAWMEE 137
>gi|332991910|gb|AEF01965.1| Holliday junction resolvase-like protein [Alteromonas sp. SN2]
Length = 144
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+A+ A P L + + ++GL
Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWNVIEKLYEEWQPQLVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E + F + + + V DERLTT A+ +L ++ +K +K
Sbjct: 66 PLNMDGTEQEVTQRAKKFAN-RLHGRFKVAVDLCDERLTTTDAKSMLFELGGYKKLTKEK 124
Query: 136 VDSIAAALILQEV 148
+DS++A +I
Sbjct: 125 IDSVSACVIFTSW 137
>gi|294673343|ref|YP_003573959.1| hypothetical protein PRU_0590 [Prevotella ruminicola 23]
gi|294472451|gb|ADE81840.1| conserved hypothetical protein TIGR00250 [Prevotella ruminicola 23]
Length = 137
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++DP + A + ++ ++I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDPLQIIAGGLATVATSELFDFL---KAYIAREQVEMIVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P NG + + FV+ VP ++DER T+V A Q ++D + +K R
Sbjct: 58 PRQPNGEPSENLARVQQFVNRWRKAVPEVPIQYYDERFTSVLAHQAMLDGGLKKKARQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +IL++ +
Sbjct: 118 GLVDEISATIILEDFM 133
>gi|90023278|ref|YP_529105.1| Holliday junction resolvase-like protein [Saccharophagus degradans
2-40]
gi|146325605|sp|Q21EI6|RUVX_SACD2 RecName: Full=Putative Holliday junction resolvase
gi|89952878|gb|ABD82893.1| Holliday junction resolvase YqgF [Saccharophagus degradans 2-40]
Length = 142
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+Q + + D GTKRIG A+ A+ + K+ + + + I+G
Sbjct: 2 TSQTLLAFDFGTKRIGAAVGQSITCTANILNTIPAKEGIPNWDTIEALLKEWQPDTVIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E + F + + R VP +DERLTT A+++ +
Sbjct: 62 LPLNMDGTENELCRRAKKFGNRIHGRFR-VPVEMFDERLTTREAKELAWEEGHKGNYAND 120
Query: 135 KVDSIAAALILQEV 148
VDSIAA LIL+
Sbjct: 121 PVDSIAARLILESW 134
>gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4]
gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4]
Length = 139
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D GTK IG+AI A P L E+ + I ++G
Sbjct: 2 SSASVLGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIEALIQEWKPDLIVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + I + V DERLTT A+ L +M +
Sbjct: 62 LPLNMDGTEQEMTQRARKFAN-RISGRFGVKTATQDERLTTADAKARLFEMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+VDS++A LI++ + +
Sbjct: 121 QVDSMSAVLIIESYFENL 138
>gi|257095138|ref|YP_003168779.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047662|gb|ACV36850.1| Holliday junction resolvase YqgF [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 168
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KRIG+A+ + R AHP + + T+ + + I ++G P
Sbjct: 10 GTVLAFDFGEKRIGVAVGEWQLRQAHPLTTIHGEANTERFAAIAALIGEWRPTHLVVGRP 69
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G+ R F + + + +ERL++ AQ+ L ++ + + +
Sbjct: 70 TSLDGTPHAMTARCRRFAD-QLRGRFGLGVDLAEERLSSFDAQERLRASGLNGRSAKKHL 128
Query: 137 DSIAAALILQEVLDRI 152
D++AA LILQ D +
Sbjct: 129 DAVAAQLILQSYFDSV 144
>gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC2047]
Length = 142
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
I + D GT RIG+A A P P L + +L I AF++
Sbjct: 4 NDQHRILAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+PLNM+G+EGP R F + + + + P DERL+T+ A++ L + N K
Sbjct: 64 GVPLNMDGTEGPITPRARKFAN-RLHGRFHKPIYTMDERLSTIEAKEKLAEFN---NKNS 119
Query: 134 QKVDSIAAALILQEVL 149
+DS+AA LIL+
Sbjct: 120 IGLDSMAATLILESWF 135
>gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 145
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTK IG+AI A P K T +++ ++ ++G PLN
Sbjct: 6 IIAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLN 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P S R F + + R+ + VF DERL+T A+ L D + VD+
Sbjct: 66 MDGTEQPITESARQFG-HALYRRFGIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVDA 124
Query: 139 IAAALILQEVL 149
+A +IL+
Sbjct: 125 TSAVIILESWF 135
>gi|332307597|ref|YP_004435448.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174926|gb|AEE24180.1| Holliday junction resolvase YqgF [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 143
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A+ A P + + I+GLP
Sbjct: 7 RTVLAFDFGTKSIGVAVGQEVTGTASPLDAINAVDGIPNWDIVAKVFEQWQPDLAIVGLP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GS + + F + ++ K VP DERLTTV A+ L +M +K +K+
Sbjct: 67 LNMDGSFQQVTFAAKKFAN-RLNAKYRVPIETVDERLTTVDAKARLFEMGGFKKLDKRKI 125
Query: 137 DSIAAALILQEVLDR 151
DS +A LI + +++
Sbjct: 126 DSASACLIFESWVEQ 140
>gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Boryong]
gi|167012743|sp|A5CCV6|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase
gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
Length = 157
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I I + +++ + I ID G K++G+AIS+ A P ++ ++
Sbjct: 1 MIINSISEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQD-RVNKIQ 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
NI A +IGLP ++G+E + H + F + + ++ + +P DERLT+ +A
Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+L N+ RK R D +AA++IL+ L R+ +S
Sbjct: 119 LLKIGNIKRKVRNAIDDRVAASIILEGALKRMQNSKS 155
>gi|58698540|ref|ZP_00373442.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225629964|ref|YP_002726755.1| putative holliday junction resolvase [Wolbachia sp. wRi]
gi|254767533|sp|C0R5C2|RUVX_WOLWR RecName: Full=Putative Holliday junction resolvase
gi|58534956|gb|EAL59053.1| conserved hypothetical protein TIGR00250 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225591945|gb|ACN94964.1| putative holliday junction resolvase [Wolbachia sp. wRi]
Length = 155
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ +KS+ ++ I +D+G K+IG+A SD + A RK +++ L
Sbjct: 1 MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +IG+PLN++ E + F + +I + V DE L+T A
Sbjct: 61 RIFKENEAGSMVIGIPLNIDEQETKWCKTIIQFANKIIKKYK-VNTYLQDESLSTSIATH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L +S K + D I+A +ILQ LD+I+ ++
Sbjct: 120 TLKITGISITKSKKIDDKISACIILQRTLDKINTIK 155
>gi|305664804|ref|YP_003861091.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
gi|88707926|gb|EAR00165.1| Holliday junction resolvase-like protein [Maribacter sp. HTCC2170]
Length = 154
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
K L I ++D G R G+A++D + A + ++ +++ EN+
Sbjct: 13 FAKKL-KLGRIVALDYGKVRTGIAVTDELQLIASGLTTVKTVELISFL---KKYVSEENV 68
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
F++G P M+ + + F+ ++ + +P DER T+ A Q +ID +
Sbjct: 69 EKFVVGEPRQMDYTPSQAEELIKPFLKHLGRTFIEIPIERQDERFTSKMAFQSMIDGGIK 128
Query: 129 RKKRIQK--VDSIAAALILQEVLDR 151
+K+R K VD I+A LILQ L++
Sbjct: 129 KKQRKNKALVDEISATLILQAYLNK 153
>gi|56751716|ref|YP_172417.1| Holliday junction resolvase-like protein [Synechococcus elongatus
PCC 6301]
gi|62900910|sp|Q5N1C3|RUVX_SYNP6 RecName: Full=Putative Holliday junction resolvase
gi|56686675|dbj|BAD79897.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 149
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A D +VR+ + + + +IGLP +M
Sbjct: 7 LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + T+ F + + + +P + DERLT+ A++++ + S + +D
Sbjct: 67 DGSLGSQAKQTQRFA-TRLSKALQLPITYVDERLTSFEAEEMIKAVGRSPSRDKGAIDRK 125
Query: 140 AAALILQEVLDRISF 154
AAALILQ+ LD
Sbjct: 126 AAALILQQWLDEQRE 140
>gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
Length = 140
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ID GTKR GLA +DP + A + L + E + F++G
Sbjct: 1 MGSLIGIDFGTKRTGLACTDPLKIIASGL---KNLSTPEVIPFLKKYCEMEEVDTFVVGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL +G+ + F+ + ++ +DER T+ A Q +I+ + +K+R
Sbjct: 58 PLQKDGTPAEVEVDIKNFIKKLQNQFPSQSIERYDERYTSKLAFQSMINGGLKKKQRADK 117
Query: 134 QKVDSIAAALILQEVLD 150
+D ++A LILQ LD
Sbjct: 118 GMIDQVSATLILQSYLD 134
>gi|81301207|ref|YP_401415.1| Holliday junction resolvase-like protein [Synechococcus elongatus
PCC 7942]
gi|146325618|sp|Q31KJ1|RUVX_SYNE7 RecName: Full=Putative Holliday junction resolvase
gi|81170088|gb|ABB58428.1| Holliday junction resolvase YqgF [Synechococcus elongatus PCC 7942]
Length = 149
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A D +VR+ + + + +IGLP +M
Sbjct: 7 LGLDVGRRRIGVAGCDRLGITVQGLTTIVRRDFASDVAAISAIAKERQVELLVIGLPYSM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + T+ F + + + +P + DERLT+ A++++ S + +D
Sbjct: 67 DGSLGSQAKQTQRFA-TRLSKALQLPITYVDERLTSFEAEEMIKAEGRSPSRDKGAIDRK 125
Query: 140 AAALILQEVLDRISF 154
AAALILQ+ LD
Sbjct: 126 AAALILQQWLDEQRE 140
>gi|213963251|ref|ZP_03391508.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
gi|213954113|gb|EEB65438.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
Length = 136
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +ID GTKR G+A++DP + A + L + T E + F+IG P
Sbjct: 1 MRILAIDYGTKRTGIAVTDPLQIIASGLCTVE---TPTLLAFLKQYTTEEAVEGFVIGQP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
+N + + F+ + +P DER T+ A Q +ID + +K+R
Sbjct: 58 KRLNNEDSSVETHIQQFITQLQKEFPSIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKA 117
Query: 135 KVDSIAAALILQEVL 149
+D I+A +ILQE L
Sbjct: 118 LIDEISATIILQEFL 132
>gi|85711782|ref|ZP_01042838.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
gi|85694397|gb|EAQ32339.1| Holliday junction resolvase-like protein [Idiomarina baltica OS145]
Length = 135
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ D GTK IG+A+ A L + + + ++GLP
Sbjct: 1 MTVVGFDFGTKSIGVAVGQSITGTASILKALKAQDGIPNWSTVEQLLKEWQPERVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E P + F + I + VP VF DERLT+ +A++ L + + R KV
Sbjct: 61 LNMDGTEQPLTQRAKKFGN-RIHGRFNVPVVFQDERLTSTAAREALFERDGYRGLEKGKV 119
Query: 137 DSIAAALILQEVL 149
DS AA LI+++ L
Sbjct: 120 DSAAALLIVEDYL 132
>gi|221133772|ref|ZP_03560077.1| Holliday junction resolvase-like protein [Glaciecola sp. HTCC2999]
Length = 137
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D GTK IG+A+ A P + + A ++GL
Sbjct: 1 MSTYLAFDFGTKSIGVAVGQTITGTAQPLAAIKANDGIPNWDTITELHAQWQPTAMLVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F I + DERLTT A+ L ++ +K K
Sbjct: 61 PLNMDGTEQEMTLRARKFGR-RISARCKSQVFEVDERLTTTDAKARLFELGGYKKLSKDK 119
Query: 136 VDSIAAALILQEVLDR 151
VDS++A +I + +
Sbjct: 120 VDSVSACVIFEAWCES 135
>gi|192359483|ref|YP_001980608.1| hypothetical protein CJA_0084 [Cellvibrio japonicus Ueda107]
gi|190685648|gb|ACE83326.1| conserved hypothetical protein TIGR00250 [Cellvibrio japonicus
Ueda107]
Length = 143
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + + D GTK IG+A R A P L + E+ + + T ++GLP
Sbjct: 3 KTLLAFDYGTKNIGVATGQTIIRSASSLPGLRARDGVPDWNEIEALLKTWQPDLVLVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE R F + R V DERL++ A+ +++ SR R V
Sbjct: 63 LNMDGSESELSARARKFANRTQGR-FGVKVEMVDERLSSFEAKGEVMERGGSRDYRHNPV 121
Query: 137 DSIAAALILQEVLDR 151
DSIAA LIL+ L+R
Sbjct: 122 DSIAARLILEAWLER 136
>gi|86609208|ref|YP_477970.1| Holliday junction resolvase-like protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|146325617|sp|Q2JKS4|RUVX_SYNJB RecName: Full=Putative Holliday junction resolvase
gi|86557750|gb|ABD02707.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 170
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A SD A + R+ +++ ++ +I ++G+PL
Sbjct: 17 LGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLA 76
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + FV + V +P V +E L+T A+ L + + K + +D
Sbjct: 77 DGSVGSQARKVQRFVR-ALQVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQ 135
Query: 140 AAALILQEVLDRIS 153
+AA+ILQ LD
Sbjct: 136 SAAVILQTWLDERR 149
>gi|282898802|ref|ZP_06306789.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
gi|281196329|gb|EFA71239.1| Holliday junction resolvase YqgF [Cylindrospermopsis raciborskii
CS-505]
Length = 154
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+KR+G+A D A + RK + E+ + + ++G+P +
Sbjct: 13 LGLDVGSKRVGVAGCDGTGLIATGITTIQRKSFVEDLQEIRGLVEKRRVQILVVGIPYSG 72
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + + + + +P DERLT+ A+Q+L+ N S VD
Sbjct: 73 DGSMGEQARRIQKFAN-RLAKALGLPLEHVDERLTSFQAEQMLLAENRSPSYNKGLVDRK 131
Query: 140 AAALILQEVLD 150
AA++ILQ+ LD
Sbjct: 132 AASIILQQWLD 142
>gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii
L2-63]
Length = 141
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I S+DLG R G+A+ D A P + K Q ++ + ++GLP N
Sbjct: 3 IMSVDLGKARTGIAVCDKTEFLASPYTVIFEKSPKQLLEKVSNTAKETKAELIVVGLPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSEG + RAF + + + V DER TT++A L N KKR VD
Sbjct: 63 MDGSEGESAQNARAFAE-NLSNETGIECVMQDERGTTITAHNFLNTTNTRGKKRKNVVDE 121
Query: 139 IAAALILQEVLDRI 152
+AA +ILQ+ LD+
Sbjct: 122 VAATIILQDYLDKR 135
>gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia
succiniciproducens MBEL55E]
gi|62900960|sp|Q65VZ2|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase
gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 140
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG A+ A P + + + ++GLPLNM
Sbjct: 8 LAFDFGTKSIGCAVGQSITGTAQALPAFKAQNGIPNWDSIEKCLKEWKPDILVVGLPLNM 67
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + + V DERLTT A+ + + KVD I
Sbjct: 68 DGTEQEFTSRARKFAN-RLHGRFGVKVELQDERLTTTEARTEIFQRGGYKALNKSKVDGI 126
Query: 140 AAALILQEVLDRIS 153
+AALIL+ +R S
Sbjct: 127 SAALILESWFERHS 140
>gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd
KW20]
gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae
86-028NP]
gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|319775826|ref|YP_004138314.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031]
gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
gi|1175215|sp|P43981|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase
gi|81336682|sp|Q4QNN8|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase
gi|167012730|sp|A5UGC3|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase
gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae
86-028NP]
gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.4-21]
gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae
10810]
gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031]
gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
Length = 139
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + + V DERLTT A+ + + + + K+D +
Sbjct: 66 DGTEQDLTLRARKFAN-RLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124
Query: 140 AAALILQEVLDR 151
+A LIL+ +
Sbjct: 125 SACLILESWFEY 136
>gi|149370600|ref|ZP_01890289.1| Holliday junction resolvase-like protein [unidentified eubacterium
SCB49]
gi|149356151|gb|EDM44708.1| Holliday junction resolvase-like protein [unidentified eubacterium
SCB49]
Length = 136
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A + K+ ++ EN+ A ++G
Sbjct: 1 MGRILAIDYGGKRTGIAVTDEMQIIASGLTTVETSKLLPFLES---YLANENVTALVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G+ + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 58 PTQKDGTPSSIEEEIQKFLKRFVKLYPLLPIHRQDERYTSKMAFQTMIDSGLKKKQRRNK 117
Query: 136 --VDSIAAALILQEVL 149
VD IAA +ILQE +
Sbjct: 118 ALVDEIAATIILQEFM 133
>gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
gi|172048187|sp|A8YTJ2|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase
gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
Length = 142
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
+ +D+G+K +G+++SD A + K L + + F++G
Sbjct: 1 MRLLGLDIGSKTVGVSVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVS-RKKR 132
LP NM+G+ G V ++A+ ++ K +P + DERLTT+ ++++L++ + RKKR
Sbjct: 61 LPKNMDGTSGASVARSKAYGK-RLEEKFGLPVHYSDERLTTIESRRVLVEDAGIHDRKKR 119
Query: 133 IQKVDSIAAALILQEVLD 150
Q +D +AA LILQ LD
Sbjct: 120 KQVIDQMAAVLILQNYLD 137
>gi|332142458|ref|YP_004428196.1| Holliday junction resolvase-like protein [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552480|gb|AEA99198.1| Holliday junction resolvase-like protein [Alteromonas macleodii
str. 'Deep ecotype']
Length = 143
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG+A+ A P P L + + ++GL
Sbjct: 6 SRTVLAFDFGTKSIGVAVGQEITGTASPLPALKARDGIPDWNVIEKLYEEWQPHVVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + R V DERLTT A+ +L ++ +K K
Sbjct: 66 PLNMDGTEQEMTQRARKFANRLHGRFR-VAVETCDERLTTTDAKSMLFELGGYKKLTKDK 124
Query: 136 VDSIAAALILQEV 148
VDS++A +I
Sbjct: 125 VDSVSACVIFASW 137
>gi|313886409|ref|ZP_07820129.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924125|gb|EFR34914.1| RNAse H domain protein, YqgF family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 141
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR GLA++DP + + Q L ++ E + I+G
Sbjct: 1 MARILAIDYGTKRTGLAVTDPLQITPGALDTVPTH---QLLNYLADYLGREKVETIILGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P M+ + + +A + + + DER T+V AQQ + + + +++R
Sbjct: 58 PTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRQRD 117
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
VD ++A +ILQ L+ +S L
Sbjct: 118 KGLVDRVSATIILQSYLESLSML 140
>gi|32130072|sp|Q9L3I7|RUVX_AERHY RecName: Full=Putative Holliday junction resolvase
gi|7208640|emb|CAB76923.1| hypothetical protein [Aeromonas hydrophila]
Length = 140
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I D GTK IG+AI P + ++ + ++G
Sbjct: 2 SSRSIMGFDYGTKSIGVAIGQELTGTGQPLRAIKANDGIPNWDDIDKLLKEWQPDLLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + R F DERLTT A+ L + R
Sbjct: 62 LPLNMDGTEQEITVRARKFGNRLHGRFWQA-VEFKDERLTTTDARARLFERGGYRALEKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD ++A LIL+ ++
Sbjct: 121 SVDGVSAQLILEAWMEE 137
>gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
Length = 140
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D G R G+A+SD A P + + A ++ + I+GLP
Sbjct: 1 MRILAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+NMNG++G R F + V V WDER TTV+A + L + NV KKR V
Sbjct: 61 INMNGTKGVRAEKCEEFADM-LRALVSVEVRMWDERSTTVTAHRFLNETNVRGKKRKAVV 119
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ L
Sbjct: 120 DTVAATIILESYL 132
>gi|218246765|ref|YP_002372136.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8801]
gi|257059807|ref|YP_003137695.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 8802]
gi|226725510|sp|B7JY16|RUVX_CYAP8 RecName: Full=Putative Holliday junction resolvase
gi|218167243|gb|ACK65980.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8801]
gi|256589973|gb|ACV00860.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 8802]
Length = 139
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 16 NQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I +D+G KRIG+A D A + R +L ++ ++
Sbjct: 1 MERISALGLDIGKKRIGVAGCDGTGLIATGLTTIERTSFQSDVEQLHQWVKEREAQILVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +M+GS G + + F I + +P + DERLT+V A+ L
Sbjct: 61 GLPYSMDGSLGFQAKQVQKFTR-RISHVLQLPVEYVDERLTSVEAEAQLKSQKRFSTWDK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D AA +ILQ+ LD
Sbjct: 120 GAIDRQAATIILQQWLDSRR 139
>gi|313905326|ref|ZP_07838692.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
gi|313469796|gb|EFR65132.1| Holliday junction resolvase YqgF [Eubacterium cellulosolvens 6]
Length = 146
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFII 73
I +D G K +G+A+SD A + R+ K+ +T + I+ ++
Sbjct: 1 MRILGLDYGAKTVGVAVSDALGITAQALETVTRERETKLRRTVARIAELCEQYEISKIVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-RKKR 132
GLPL M+ G R F + ++ + + WDERLTTV+A ++L +M V R R
Sbjct: 61 GLPLLMSDEIGDRAQKAMEFGEM-LKKRTGLEVIMWDERLTTVAADEVLDEMGVRGRHNR 119
Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158
+D IAA ILQE LD S E
Sbjct: 120 KAVIDQIAAGFILQEYLDAQSAKEQR 145
>gi|307565554|ref|ZP_07628034.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
gi|307345713|gb|EFN91070.1| RNAse YqgF [Prevotella amnii CRIS 21A-A]
Length = 139
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++DP R A+ + ++ E +I E + ++G
Sbjct: 1 MGRIIAIDYGKKRTGIAVTDPLRIIANGLATVSTPELYAFLQE---YIQREKVDLIVMGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P ++G + FV VP ++DER T+ A Q +I V +K R
Sbjct: 58 PTQLSGKPSENMGRVEQFVLRWKKACPSVPIEYYDERFTSALAHQAMISGGVKKKVRRQD 117
Query: 133 IQKVDSIAAALILQEVL 149
VD I+A +ILQ+ +
Sbjct: 118 KGLVDEISATIILQDFM 134
>gi|229117883|ref|ZP_04247245.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
gi|228665540|gb|EEL21020.1| Holliday junction resolvase [Bacillus cereus Rock1-3]
Length = 130
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
GTK +G+A+SD A + ++ + + N+ ++GLP NMNG+
Sbjct: 2 GTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYNVDKIVVGLPKNMNGT 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
GPR + + F + + + V WDERL+T++A+++LI +VSRKKR Q +D +AA
Sbjct: 62 IGPRGEACQQFAE-NLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQVIDKMAAV 120
Query: 143 LILQEVLDR 151
+ILQ LD
Sbjct: 121 VILQGFLDS 129
>gi|227496181|ref|ZP_03926487.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
15434]
gi|226834264|gb|EEH66647.1| possible Holliday junction resolvase [Actinomyces urogenitalis DSM
15434]
Length = 160
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D+G R+G+A D A P L R + E + ++GLP+ +
Sbjct: 9 LAFDVGKARVGVARCDADAILAVPECTLTRDRYGADLEEAADLVEDYEAIEVVVGLPIQL 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G R + + R VP DERL+TVSA Q L K VD
Sbjct: 69 SGGSTASTRDARGWARQLAARVGPVPVRLVDERLSTVSAHQALHGSGRHAKDFRPVVDQA 128
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +IL++ L+ +E G
Sbjct: 129 AAVVILEQALE----IERRTG 145
>gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus ATCC
19977]
gi|226731629|sp|B1MCF8|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase
gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus]
Length = 166
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
+D+GT RIG++ SDP A P + R K + + ++ +
Sbjct: 17 PGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVV 76
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP N+ G F + +R VP DER TT +AQ+ L + V +++
Sbjct: 77 VGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQ 136
Query: 133 IQKVDSIAAALILQEVLDRISFLES 157
+D AA ILQ+ L++ S
Sbjct: 137 RGIIDQAAAVAILQDWLEQRRRCGS 161
>gi|317124716|ref|YP_004098828.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
gi|315588804|gb|ADU48101.1| Holliday junction resolvase YqgF [Intrasporangium calvum DSM 43043]
Length = 165
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT-TENIAAFI 72
ID+G R+G+A SDP FA+P L R +E ++ +T ++ +
Sbjct: 3 PRPGVRLGIDVGDARVGVAASDPSGTFANPVQTLARDVRELADIEAIAILTAERDVLEIV 62
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP ++G EG RA+ + R VP DERLTTV A Q L D V + +
Sbjct: 63 VGLPRLLSGGEGEAARGARAYAAQLAARVAPVPVRLVDERLTTVGAHQRLRDSGVPGRGQ 122
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
VD AA LILQ LD E+S G
Sbjct: 123 RSVVDQAAAVLILQSALDA----EASAG 146
>gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
Length = 135
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ D G ++IG+A+ R A P L + + + I +A ++GLP
Sbjct: 1 MTLLGFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M+ +E F ++ + +P DERLT+ A + L + + R ++ V
Sbjct: 61 FQMDDTEVAWSPRVHRFAR-QLEGRYRLPVHLVDERLTSREAHRQLAERD-RRTPTLEAV 118
Query: 137 DSIAAALILQEVL 149
D++AAALIL+ L
Sbjct: 119 DALAAALILETWL 131
>gi|228470009|ref|ZP_04054925.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
gi|228308390|gb|EEK17228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
Length = 143
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P I +ID GTKR GLA++D + + Q L ++ E + ++G
Sbjct: 2 PMARILAIDYGTKRTGLAVTDSLQITPGALDTVPTH---QLLNYLADYLGREEVETIVLG 58
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR-- 132
P M+ + + +A + + + DER T+V AQQ + + + +++R
Sbjct: 59 KPTQMDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRRQ 118
Query: 133 -IQKVDSIAAALILQEVLDRISFL 155
VD ++A +ILQ L+ + L
Sbjct: 119 DKGLVDRVSATIILQSYLESLRML 142
>gi|38233935|ref|NP_939702.1| Holliday junction resolvase-like protein [Corynebacterium
diphtheriae NCTC 13129]
gi|38200196|emb|CAE49877.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 183
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 11/156 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
+D+GT RIGLA+SD G R A P L R+ Q + I +I
Sbjct: 25 PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 84
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP ++ G+ V + + +V DERLTTV A Q L
Sbjct: 85 VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 144
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
VS KK + VD AA ILQ LD RI+ LE+
Sbjct: 145 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLENR 180
>gi|254423308|ref|ZP_05037026.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
7335]
gi|196190797|gb|EDX85761.1| conserved hypothetical protein TIGR00250 [Synechococcus sp. PCC
7335]
Length = 144
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG KRIG+A D A L + + L + I ++ ++GLP M
Sbjct: 5 LGLDLGAKRIGVAGCDRTGLIATGLTTLYKTSFESIIVPLETLIQARSVEVLVVGLPYTM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G G + + F + + + + +P F DERLT+ A+Q+L+ S + +D
Sbjct: 65 DGQIGFQAKKIQKFA-HRLSKVLGLPVEFVDERLTSFQAEQMLLAERRSLTNCKELIDRK 123
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LD
Sbjct: 124 AAAIILQQWLDERR 137
>gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
Length = 162
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 16/148 (10%)
Query: 21 SIDLG---------------TKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
++D G TK IG+A D G RFA + R K T +L +T
Sbjct: 12 ALDYGNALPDGGALLGLDLGTKTIGVATCDAGWRFATAGKTIERSKFTTDCGKLREIVTA 71
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
+IA ++GLP NM+G+EGPR ++RA+ + R +P + WDER +T SA+ +I
Sbjct: 72 RSIAGLVVGLPRNMDGTEGPRAQASRAYAK-NLARAFGLPVLLWDERWSTSSAESAMIGQ 130
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
++SR KR +K+DS AAA+ILQ +D ++
Sbjct: 131 DMSRAKRAEKIDSHAAAVILQGAIDTLA 158
>gi|295112760|emb|CBL31397.1| conserved hypothetical protein TIGR00250 [Enterococcus sp. 7L76]
gi|323480436|gb|ADX79875.1| conserved hypothetical protein [Enterococcus faecalis 62]
Length = 137
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL--SFITTENIAAFIIGLPL 77
+D+G++ +G+A+SD A + + + + + F++GLP
Sbjct: 1 MGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKV 136
NMN S GPR ++ A+ I +P + DERLTTV A++ L++ + SR KR + +
Sbjct: 61 NMNNSIGPRAEASMAYGD-KIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVI 119
Query: 137 DSIAAALILQEVLDRIS 153
D +AA +ILQ LD S
Sbjct: 120 DKLAAVMILQNYLDAHS 136
>gi|303232788|ref|ZP_07319473.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
gi|302481274|gb|EFL44349.1| RNAse H domain protein, YqgF family [Atopobium vaginae PB189-T1-4]
Length = 137
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G R+G+A+SD A P L ++V A + + GLP
Sbjct: 1 MRVVALDIGDVRVGIAVSDATGSVASPVKVLPFQEVYACAKTFRRILEDYEPELLVCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++G+ G + + I +P F DERL++ A++IL K+ +
Sbjct: 61 KSLDGACGAQAEKITQQAQH-IAACCNLPLAFVDERLSSSEAKRILRAQGYKEKQMRGHI 119
Query: 137 DSIAAALILQEVLD 150
D IAA+L LQ LD
Sbjct: 120 DMIAASLFLQAYLD 133
>gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
Length = 140
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ + + D G+K IG AI A + + ++ + ++G
Sbjct: 2 SNRTVIAFDFGSKSIGAAIGQELTGSARALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+GSE P R F + + + V DERL+TV A+ L D R
Sbjct: 62 LPLNMDGSEQPVTEQARKFAN-RLHGRFGVQIALHDERLSTVEARANLFDRGGFRALDKG 120
Query: 135 KVDSIAAALILQEVL 149
VDS +A +IL+
Sbjct: 121 SVDSASAVVILESWF 135
>gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens
CN-32]
gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32]
Length = 141
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ + D GTK IG+AI A P L ++ I ++G
Sbjct: 2 NSKTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E H R F + I+ K V V DERLTT A+ L ++ +
Sbjct: 62 LPLNMDGTEQDMTHRARKFAN-RINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKG 120
Query: 135 KVDSIAAALILQEVLDR 151
+VD+++A LI++ +
Sbjct: 121 QVDAVSAVLIIESYFEN 137
>gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC 7425]
gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425]
Length = 150
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG KRIG+A D A L R+ + +L + + ++GLP M
Sbjct: 5 LGLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLPYRM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + I + + +P + DERLT+ A+ +L + +D
Sbjct: 65 DGSIGFQARRVQRLAQ-RIAQALNLPVEYVDERLTSFEAEAMLRSQGRFSNRDKPLIDRK 123
Query: 140 AAALILQEVLDRIS 153
AAALILQ+ L++
Sbjct: 124 AAALILQQWLEQRR 137
>gi|118597207|sp|Q6NGZ8|RUVX_CORDI RecName: Full=Putative Holliday junction resolvase
Length = 171
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 11/156 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
+D+GT RIGLA+SD G R A P L R+ Q + I +I
Sbjct: 13 PGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICDNHI 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP ++ G+ V + + +V DERLTTV A Q L
Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALR 132
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
VS KK + VD AA ILQ LD RI+ LE+
Sbjct: 133 ASGVSEKKGRRVVDQAAAVEILQSWLDARINVLENR 168
>gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1]
gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1]
gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200]
Length = 141
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+AI A P L ++ I ++GLP
Sbjct: 4 KTVLGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E H R F + I+ K V V DERLTT A+ L ++ + +V
Sbjct: 64 LNMDGTEQDMTHRARKFAN-RINAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAVSAVLIIESYFEN 137
>gi|303237217|ref|ZP_07323787.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
gi|302482604|gb|EFL45629.1| RNAse H domain protein, YqgF family [Prevotella disiens FB035-09AN]
Length = 139
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S+D G KR GLA++DP + A+ + ++ + ++ EN+ ++G
Sbjct: 1 MGRILSVDYGKKRTGLAVTDPLQIIANGLVTVATSELFDFLKD---YVQRENVECIVVGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
P +NG + FV+ +P ++DER T+ AQQ ++ V +K R
Sbjct: 58 PTQLNGQPSENLSRVEQFVNRWRKAMPLIPVEYYDERFTSALAQQAILAGGVKKKMRRED 117
Query: 133 IQKVDSIAAALILQEVL 149
VD ++A +ILQ+ +
Sbjct: 118 KGLVDEVSATIILQDYM 134
>gi|300865579|ref|ZP_07110357.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
gi|300336413|emb|CBN55507.1| Holliday junction resolvase-like protein [Oscillatoria sp. PCC
6506]
Length = 170
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 13 LKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+ + I +D+G KRIG+A D A + R + + +T +
Sbjct: 1 MDYDSRISALGLDIGQKRIGVAGCDGTGLIATGLGTIARSSFDKDVAQFRQLVTERGVQV 60
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
+ GLP NMNG+ G + + + + + +P + DERLT++ A+Q+++ +S
Sbjct: 61 LVSGLPYNMNGTLGFQARQVQKYAS-RLASALALPLEYVDERLTSIQAEQLMLTEKISPS 119
Query: 131 KRIQKVDSIAAALILQEVLDRISFL 155
+ +D AAA+ILQ+ LD +
Sbjct: 120 RNKALIDRKAAAIILQQWLDERREM 144
>gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
Length = 139
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQTLPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + + V DERLTT A+ + + + + K+D +
Sbjct: 66 DGTEQDLTLRARKFAN-RLQGRFGVNIHLQDERLTTTQARSEIFERGGFKALKKGKIDGV 124
Query: 140 AAALILQEVLDR 151
+A LIL+ +
Sbjct: 125 SACLILESWFEY 136
>gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
Length = 161
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIAAFIIGLPL 77
D+GT R+G+A+SDP A P L R + E+++ I+GLP
Sbjct: 2 DVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDIAEIVALSAERAALEVIVGLPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+++G EGP + R + + R V DERLT+VSA + L D V+ +++ VD
Sbjct: 62 SLSGDEGPSAEAARKYAAELARRVAPVGVRLVDERLTSVSAHRALRDSGVAGRRQRAVVD 121
Query: 138 SIAAALILQEVLDR 151
AA LILQ LD
Sbjct: 122 QAAAVLILQAALDE 135
>gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM
9187]
gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187]
Length = 146
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + D GTK IG+A A P L + ++ + I+GL
Sbjct: 6 NRSLMGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + F DERLTT A+ L + R +
Sbjct: 66 PLNMDGTEQEMTQRARKFGQ-RLHGRFGFQVEFKDERLTTTDAKARLFEHGGYRALGKSR 124
Query: 136 VDSIAAALILQEVLDR 151
VD+++A LIL+ ++
Sbjct: 125 VDAVSAQLILESWMES 140
>gi|291544813|emb|CBL17922.1| conserved hypothetical protein TIGR00250 [Ruminococcus sp. 18P13]
Length = 140
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R GLA D A P + + ++G P N
Sbjct: 3 ILAVDFGDARTGLACCDRSELLASPAGVISETDFEVCIQKTAEAAREHRAEQIVVGYPKN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R F + + V WDER TTVSA + L N KKR VD+
Sbjct: 63 MNGTIGERAEKCALFAE-KLRTLAGIETVLWDERCTTVSAHRYLNQTNTRGKKRKAVVDA 121
Query: 139 IAAALILQEVL 149
+AA +IL+ L
Sbjct: 122 VAATIILESYL 132
>gi|288925814|ref|ZP_06419745.1| Holliday junction resolvase [Prevotella buccae D17]
gi|315608231|ref|ZP_07883221.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
gi|288337469|gb|EFC75824.1| Holliday junction resolvase [Prevotella buccae D17]
gi|315250012|gb|EFU30011.1| Holliday junction resolvase [Prevotella buccae ATCC 33574]
Length = 139
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I SID G KR GLA++DP + A+ + ++ +++ E + +IG P
Sbjct: 1 MRIVSIDYGKKRTGLAVTDPLQIIANGLATVSSVELFGFLE---TYVKKEGVERIVIGRP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR---I 133
MNG + F + +P ++DER T+V A + +ID V +K R
Sbjct: 58 TQMNGQPSENLVRVENFYNRWCKAHPEIPIEYYDERFTSVIAHRAMIDGGVKKKVRQENK 117
Query: 134 QKVDSIAAALILQEVLDRI 152
VD I+A +ILQ+ +
Sbjct: 118 GLVDEISATIILQDYMKSR 136
>gi|257063514|ref|YP_003143186.1| conserved hypothetical protein TIGR00250 [Slackia
heliotrinireducens DSM 20476]
gi|256791167|gb|ACV21837.1| conserved hypothetical protein TIGR00250 [Slackia
heliotrinireducens DSM 20476]
Length = 138
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIGLA+SD R A P L V E + I + GLP
Sbjct: 1 MRVLALDIGEVRIGLAVSDAAGRIASPLKVLPADVVLNDGREFRMLVEDWEIEHLVCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M G EGP+ S + I +P F DERL++ A++IL + + + KV
Sbjct: 61 YTMAGEEGPQAASIKEKAR-QIASARDLPLSFVDERLSSAEAKRILREEGLDERSMRGKV 119
Query: 137 DSIAAALILQEVLDR 151
D IAA+L LQ LD
Sbjct: 120 DMIAASLFLQAWLDS 134
>gi|225851249|ref|YP_002731483.1| hypothetical protein PERMA_1719 [Persephonella marina EX-H1]
gi|225645144|gb|ACO03330.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 142
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D+GTKRIG+A SDP +P P++ ++ + +I +IG
Sbjct: 2 KGKRTLALDVGTKRIGVAYSDPLGISTNPLPYI--DNDEHAFEKIRDVVREYDIGTVVIG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LPL + G EG + T+ F + V F DER TT A++ L + R K+
Sbjct: 60 LPLTLKGKEGTQAKLTKEFAQKLKGYLPEDVEIEFVDERFTTSLAEKQLKETG-KRSKKR 118
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
+K+DS++A IL+ L++ ++
Sbjct: 119 EKIDSLSAVYILKTYLEKKQYMN 141
>gi|254993596|ref|ZP_05275786.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J2-064]
Length = 124
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88
+AISDP A + + + + + + ++GLP NMN + GPR
Sbjct: 1 VAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPKNMNNTIGPRAE 60
Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR + +D +AA +ILQ
Sbjct: 61 SSKIYAE-VLESRIGLPVVLWDERLTTSAAERTLIEADVSRKKRKEVIDKLAAVMILQSY 119
Query: 149 LDRIS 153
LD +
Sbjct: 120 LDTTN 124
>gi|319442137|ref|ZP_07991293.1| Holliday junction resolvase-like protein [Corynebacterium variabile
DSM 44702]
Length = 178
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA-----LELLSFITTENI 68
+D+GT RIG+++SDP A P + K + +L I +
Sbjct: 22 PGRGRRLGLDVGTVRIGVSLSDPDGILATPLETVQADKTSGAWPGEEFDHVLELIAENFV 81
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP+++ + + + + +P DER++T++A + V+
Sbjct: 82 VEVVVGLPVSLRSHRTRSTRRAENYA-TRLRKNLDIPVRLVDERMSTMAATNAMHASGVN 140
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+KK ++D AA ILQ LD + G
Sbjct: 141 QKKGRSRIDQAAAVHILQGWLDARKAFSARHG 172
>gi|325105793|ref|YP_004275447.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
gi|324974641|gb|ADY53625.1| Holliday junction resolvase YqgF [Pedobacter saltans DSM 12145]
Length = 138
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I S D GTKRIG+A++DP + A+ + K + + ++ TE++ F++G
Sbjct: 1 MARIMSFDFGTKRIGIAVTDPMKIIANGLTTVHPKDIVEFL---KKYLLTESVETFVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+G++ RAFV+ + +P DER T+ A ++ +K R
Sbjct: 58 PKQMDGTDSQSAVHVRAFVNLLKKNFSEIPVEMMDERFTSKMASAAILQSGAKKKTRQDK 117
Query: 134 QKVDSIAAALILQEVLDRI 152
VD+++A +ILQ ++++
Sbjct: 118 ALVDTVSATIILQSYMEKL 136
>gi|332288759|ref|YP_004419611.1| Holliday junction resolvase-like protein [Gallibacterium anatis
UMN179]
gi|330431655|gb|AEC16714.1| Holliday junction resolvase-like protein [Gallibacterium anatis
UMN179]
Length = 139
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GT+ IG A+ + A P + + + ++GLPL
Sbjct: 5 TVIAFDFGTQSIGCAVGQSITQTAQALPAFKAQDGIPNWDAIKKCLDEWKPDLVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E R F + ++ + V DERLTT A+ + R K+D
Sbjct: 65 NMDGTEQEITQRARKFAN-RLNGRFGVKIALQDERLTTTEARAEIFSRGGYRALNKGKID 123
Query: 138 SIAAALILQEVLDR 151
SI+A LIL+ +
Sbjct: 124 SISACLILESWFEN 137
>gi|282881720|ref|ZP_06290383.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
gi|281304479|gb|EFA96576.1| putative RNAse [Prevotella timonensis CRIS 5C-B1]
Length = 137
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I SID G KR G+A++D + A+ + + +++ E + +IG P
Sbjct: 1 MRILSIDYGKKRTGIAVTDSLQIIANGLATVATSALFDFL---KTYVAQEEVERIVIGKP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
+ NG + FV+ +P F+DER T+V A Q ++ + +K R
Sbjct: 58 MQTNGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKA 117
Query: 135 KVDSIAAALILQEVLDRIS 153
VD ++A +ILQ ++
Sbjct: 118 LVDEVSATIILQSYMESRR 136
>gi|71279034|ref|YP_267994.1| Holliday junction resolvase-like protein [Colwellia psychrerythraea
34H]
gi|146325564|sp|Q486M1|RUVX_COLP3 RecName: Full=Putative Holliday junction resolvase
gi|71144774|gb|AAZ25247.1| conserved hypothetical protein TIGR00250 [Colwellia psychrerythraea
34H]
Length = 148
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G K IG+A+ A P + L ++ ++GLP
Sbjct: 12 RTVIGFDFGKKYIGVAVGQEMTGSATPLGSVKATDGIPHWDNLAKYLKEWQPDFIVVGLP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE + F + I + + F DERLTT A++ L + + +
Sbjct: 72 LNMDGSEQQLTLDAKKFGN-RIHGRFGIQVEFQDERLTTADAKEQLFARGGFKNLKKDNI 130
Query: 137 DSIAAALILQEVLDR 151
D+ +A LI++ ++
Sbjct: 131 DAESARLIIESYFEQ 145
>gi|312890474|ref|ZP_07750010.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
18603]
gi|311296932|gb|EFQ74065.1| Holliday junction resolvase YqgF [Mucilaginibacter paludis DSM
18603]
Length = 151
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I + D GTKRIG+A++DP + A + K + + + + FI+G
Sbjct: 14 SMRIMAFDYGTKRIGIAVTDPLQIIATGLDTVHPKDIVEYL---KKYFVLNPVERFIVGE 70
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ + + FV + +P DER T+ A ++ + + R
Sbjct: 71 PKQMDNTASQSAPHVKGFVTILKKNFPDIPVEMLDERFTSKMASAVIAQSGMKKMDRQNK 130
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD+I+A +ILQ ++R +
Sbjct: 131 ALVDTISATIILQSWMERFN 150
>gi|15603735|ref|NP_246809.1| Holliday junction resolvase-like protein [Pasteurella multocida
subsp. multocida str. Pm70]
gi|32130064|sp|Q9CJX0|RUVX_PASMU RecName: Full=Putative Holliday junction resolvase
gi|12722298|gb|AAK03954.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 140
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D GTK IG A+ A P + + + ++GL
Sbjct: 2 GMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + + V DERLTT A+ + + K
Sbjct: 62 PLNMDGTEQDLTVRARKFA-HRLHGRFGVAVELQDERLTTTEARAEIFGRGGYKALNKSK 120
Query: 136 VDSIAAALILQEVLDR 151
VD I+A LIL+ +
Sbjct: 121 VDGISACLILESWFEN 136
>gi|86133857|ref|ZP_01052439.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
gi|85820720|gb|EAQ41867.1| uncharacterized protein family (UPF0081) [Polaribacter sp. MED152]
Length = 136
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D G R G+A++D + A + ++ +++ E + ++G
Sbjct: 1 MGRILALDFGKVRTGIAVTDELQIIASGLKTVATNELLPFL---KNYLKQEKVELILLGK 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P M+ S+ + F+ + +P DER T+ A Q +ID + +K+R K
Sbjct: 58 PKQMDNSDSESEVLIKPFLEKLEKTFPKIPLKRVDERFTSKMAFQTMIDSGLKKKQRRNK 117
Query: 136 --VDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 118 ALVDEISATIILQSYL 133
>gi|188996418|ref|YP_001930669.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
gi|226695309|sp|B2V842|RUVX_SULSY RecName: Full=Putative Holliday junction resolvase
gi|188931485|gb|ACD66115.1| Holliday junction resolvase YqgF [Sulfurihydrogenibium sp. YO3AOP1]
Length = 145
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G KRIG+A+SDP A P F++ + ++ I I+ +IGL
Sbjct: 1 MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL + G EG + T+ FV N+ + + +F DER T+ A++ L+ +K + +
Sbjct: 59 PLTLKGEEGEQARYTKEFVENLKNHIPQDIEIIFVDERFTSSLAEKTLLQ--TKKKNKKE 116
Query: 135 KVDSIAAALILQEVLDRISFLES 157
K+DS++A ILQ LDR+SF
Sbjct: 117 KIDSLSAVFILQTYLDRLSFSNE 139
>gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
Length = 140
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+AI +P + E+ I ++GLPL
Sbjct: 5 TVLGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E + F + I + V DERLTT A+ L ++ + +VD
Sbjct: 65 NMDGTEQEMTQRAKKFAN-RIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123
Query: 138 SIAAALILQEVLDRI 152
+++A LI++ + +
Sbjct: 124 AMSAVLIIESYFENL 138
>gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
Length = 159
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GT RIG+AI A P L + + + F++GLP
Sbjct: 22 KTVLGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFVVGLP 81
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+GSE R F + + P+ DERL++ A+ +I R + V
Sbjct: 82 LNMDGSENEMCQRARKFAK-RLHGRYNRPYHMMDERLSSYDAKGQVIAQGGHRNFKENSV 140
Query: 137 DSIAAALILQEVL 149
D +AA LI++
Sbjct: 141 DGLAAQLIIETWF 153
>gi|290476318|ref|YP_003469222.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
Length = 141
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N+ I + D GT IG AI A K+ + + + + I+G
Sbjct: 2 KNRTIIAFDFGTHSIGTAIGQEITGTARALSAFKAKEGSPSWELIEKLLKEWQPDLIIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E R F + + + V DERLTT+ A+ L D +
Sbjct: 62 LPLNMDGTEQLVTAQARKFAN-RLHGRFGVQVELHDERLTTIEARSHLFDHGGYKALDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
KVDS++A +IL+ ++
Sbjct: 121 KVDSVSAVVILESWFEQ 137
>gi|225010668|ref|ZP_03701138.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
gi|225005221|gb|EEG43173.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-3C]
Length = 137
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D GTKR G+A++DP + A ++ + S++ +E ++ ++G
Sbjct: 1 MKRIIALDFGTKRTGVAVTDPMQIIASGLDTVLTPDLISFL---KSYMVSEPVSTIVLGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ + + AF+ + + DER T+ A Q +I + +KKR
Sbjct: 58 PKQMDNTPSESEAAIGAFILTLEAEFPDIEIARQDERFTSKMAVQAMIVGGMKKKKRQEK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
+VD I+A LILQ L+RIS
Sbjct: 118 GRVDQISATLILQAYLNRIS 137
>gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
gi|167012754|sp|A8GN18|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase
gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
Length = 154
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I ++ + L N P+ +ID G+K++G+A+S+ R A P + LL
Sbjct: 1 MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
S + + +IG+P++M+G+ + + F + + +P DERLTT +A
Sbjct: 61 SIVEKYKVCGVVIGMPIDMSGAVTEQTNMVMKFAEEF-TKSINLPIYLQDERLTTKAANN 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
L + RK R D++AA++IL+ VLD + +
Sbjct: 120 FLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI 154
>gi|159037444|ref|YP_001536697.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
gi|157916279|gb|ABV97706.1| Holliday junction resolvase YqgF [Salinispora arenicola CNS-205]
Length = 153
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV------TQTALELLSFITTENI 68
+D+G R+G+A SDP A P L R + EL + +
Sbjct: 5 SRGVRLGVDVGQVRVGVARSDPHGVLATPLVTLARDRDAAPDAVPSDIAELAALVAEHEA 64
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP+N+ G GP + +V +++ VP DER++TV A + L + V
Sbjct: 65 VEVVVGLPVNLAGRHGPAAVQVQEYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVR 124
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
+++ VD AA ILQ LD
Sbjct: 125 GRRQRAVVDQAAAVEILQSWLD 146
>gi|92112194|ref|YP_572122.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
3043]
gi|146325563|sp|Q1R1I5|RUVX_CHRSD RecName: Full=Putative Holliday junction resolvase
gi|91795284|gb|ABE57423.1| Holliday junction resolvase YqgF [Chromohalobacter salexigens DSM
3043]
Length = 148
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D GT+RIG+A+ + A L + ++ + + ++GLPLN
Sbjct: 9 VLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLN 68
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E R F + + + P +DER +T +A++I D R VD
Sbjct: 69 MDGTESDMSRRARKFGN-RLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDG 127
Query: 139 IAAALILQEVLDRISFLES 157
IAA LIL+ +FL+
Sbjct: 128 IAAQLILESFFADDTFLQR 146
>gi|299135876|ref|ZP_07029060.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
gi|298602000|gb|EFI58154.1| Holliday junction resolvase YqgF [Acidobacterium sp. MP5ACTX8]
Length = 164
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + I ++D+G +RIGLAI+DP A P L R + + FI + +
Sbjct: 1 METSPRILALDVGDRRIGLAITDPLGLTAQPLFTLHRTSLRADLKSVARFIRQHKVTTVV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-- 130
+G PL+ +GS P+ AF + + + DERLTT+ A +L S +
Sbjct: 61 VGNPLHADGSPSPQAAKALAFAAAVREEHPTLAHHLLDERLTTLEAHALLDAAGHSARTA 120
Query: 131 --------KRIQKVDSIAAALILQEVL 149
R +D +AA L+L+ L
Sbjct: 121 GRSHGKTIDRKDLIDQVAATLLLESFL 147
>gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 143
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G K +G+A+SDP A P L R A ++ + + A +IGLP
Sbjct: 4 RVIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLPR 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK--KRIQK 135
+NG G + + F + VP +F DER +T SA+ I+ RK ++
Sbjct: 64 LLNGVVGTQAERVQYFAR-RLASLTDVPVIFQDERFSTASAKDIMKSNRRYRKGFYSRER 122
Query: 136 VDSIAAALILQEVLDRIS 153
D++AAA+ILQ+ LD
Sbjct: 123 DDAVAAAVILQDWLDENR 140
>gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC
700345]
gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345]
Length = 141
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+AI A P + E+ + IT ++GLP
Sbjct: 4 KSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F + I + V DERLTT A+ L +M + +V
Sbjct: 64 LNMDGTEQEMTQRARKFAN-RISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAMSAVLIVESYFEN 137
>gi|310658791|ref|YP_003936512.1| holliday junction resolvase [Clostridium sticklandii DSM 519]
gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [Clostridium sticklandii]
Length = 139
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G KRIG+A+SD A P L RK + E+ I E+I ++GL
Sbjct: 1 MRRILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P NM+ SEG + TR F ++++ + ++ DERLT+ A+Q L M +++ K +
Sbjct: 61 PKNMDSSEGIQAKRTRDFSQLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKK 120
Query: 135 KVDSIAAALILQEVLDR 151
+D+ AA ILQ LD
Sbjct: 121 LIDTAAAVHILQGYLDS 137
>gi|86605420|ref|YP_474183.1| Holliday junction resolvase-like protein [Synechococcus sp.
JA-3-3Ab]
gi|146325616|sp|Q2JWE3|RUVX_SYNJA RecName: Full=Putative Holliday junction resolvase
gi|86553962|gb|ABC98920.1| conserved hypothetical protein TIGR00250 [Synechococcus sp.
JA-3-3Ab]
Length = 159
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +RIG+A SD A + R+ + + ++ ++I ++G+PL
Sbjct: 17 LGLDVGNRRIGVAGSDGLGLLATGLGVIRRRSLPEDIAQVQAWIRRRQATVVVVGIPLLA 76
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + FV + V +P V +E L+TV A+ L + K + +D
Sbjct: 77 DGSVGSQARKVQRFVR-ALQAAVDLPVVTVNEYLSTVQAEWDLRQAGIPAKAQKALIDQQ 135
Query: 140 AAALILQEVLDRISFLESSK 159
+AA+ILQ LD + +SSK
Sbjct: 136 SAAVILQTWLDERRYSQSSK 155
>gi|227833216|ref|YP_002834923.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
ATCC 700975]
gi|262184202|ref|ZP_06043623.1| Holliday junction resolvase-like protein [Corynebacterium
aurimucosum ATCC 700975]
gi|254767510|sp|C3PGN1|RUVX_CORA7 RecName: Full=Putative Holliday junction resolvase
gi|227454232|gb|ACP32985.1| putative Hollyday junction resolvase [Corynebacterium aurimucosum
ATCC 700975]
Length = 182
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 12/153 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL-----LSFITTENI 68
+D+GT RIG+A+SD R A P + R+ + + L I +
Sbjct: 13 PGPGRRLGLDVGTVRIGVAVSDRDARLAMPVETVRRETGFKDRDKDDIDRLLDLIHEYDA 72
Query: 69 AAFIIGLPLNMNGSEG-------PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+GLP ++ G+ R + K P DERLTTV A
Sbjct: 73 VEVAVGLPRDLKGNGSSSVKHAKEIAFRIRRRLAKDDRMKEPPPVRMVDERLTTVVATSA 132
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
L VS K+ +D AA ILQ LD F
Sbjct: 133 LRASGVSEKRGRSVIDQAAAVEILQSWLDARHF 165
>gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis
HAW-EB4]
gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4]
Length = 140
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+AI A P + E+ + IT ++GLP
Sbjct: 4 KSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E R F + I + V DERLTT A+ L +M + +V
Sbjct: 64 LNMDGTEQEMTQRARKFAN-RISGRFGVKVATQDERLTTADAKARLFEMGGYKALTKGQV 122
Query: 137 DSIAAALILQEVLDR 151
D+++A LI++ +
Sbjct: 123 DAMSAVLIVESYFEN 137
>gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
Length = 153
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 67/138 (48%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +D+G R+G+A + A P L + EL SFI E A +GL
Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +NG EG R++ + + +P DERL++V+A + L VS ++ +
Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA IL++ L+ +
Sbjct: 123 VDQVAAQQILEQALEMSN 140
>gi|145295753|ref|YP_001138574.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum R]
gi|140845673|dbj|BAF54672.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 182
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68
+D+GT RIG+A SD + A P + R+ + L++ + N
Sbjct: 13 PGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNA 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILID 124
I+GLP ++ G+ V + + + +P DERLTTV A Q L
Sbjct: 73 VEVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRA 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD-RISFLE 156
VS K + +D AA ILQ LD R LE
Sbjct: 133 SGVSEKAGRKVIDQAAAVEILQTWLDARTRALE 165
>gi|315503217|ref|YP_004082104.1| holliday junction resolvase yqgf [Micromonospora sp. L5]
gi|315409836|gb|ADU07953.1| Holliday junction resolvase YqgF [Micromonospora sp. L5]
Length = 153
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFI 63
+ L +D+G R+G+A DP A P L R V EL+
Sbjct: 1 MSELSRGVR-LGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLA 59
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP+N+ G GP + A+ + D +P DER++TV A + L
Sbjct: 60 AEHEAVGIVVGLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLA 119
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ V K++ VD AA ILQ LD
Sbjct: 120 ERGVRGKRQRAVVDQAAAVEILQSWLD 146
>gi|19552843|ref|NP_600845.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum ATCC 13032]
gi|62390514|ref|YP_225916.1| Holliday junction resolvase-like protein [Corynebacterium
glutamicum ATCC 13032]
gi|32130038|sp|Q8NQ23|RUVX_CORGL RecName: Full=Putative Holliday junction resolvase
gi|21324400|dbj|BAB99024.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Corynebacterium glutamicum ATCC 13032]
gi|41325851|emb|CAF21640.1| Predicted endonuclease involved in recombination [Corynebacterium
glutamicum ATCC 13032]
Length = 182
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68
+D+GT RIG+A SD + A P + R+ + L++ + N
Sbjct: 13 PGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNA 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILID 124
I+GLP ++ G+ V + + + +P DERLTTV A Q L
Sbjct: 73 VEVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRA 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD-RISFLE 156
VS K + +D AA ILQ LD R LE
Sbjct: 133 SGVSEKAGRKVIDQAAAVEILQTWLDARTRALE 165
>gi|58584953|ref|YP_198526.1| endonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|81311607|sp|Q5GRU0|RUVX_WOLTR RecName: Full=Putative Holliday junction resolvase
gi|58419269|gb|AAW71284.1| Predicted endonuclease involved in recombination, RNase H fold,
yqgF family [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 155
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M + +KS+ ++ I +D+G K+IG+A SD + A RK +++ L
Sbjct: 1 MLYRDPYEFLKSIPKDKCIMCLDMGEKQIGIAFSDKTQLIATAHSVYYRKNISKDLGYLN 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ +IGLPL ++G + + F + MI + V DE L+T A
Sbjct: 61 RIFKKNEAGSIVIGLPLEIDGQKSEWCKTIIKFANKMIKKYK-VSTYLQDESLSTSIAAH 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
L VS K + D I+A +ILQ LD+I+ ++
Sbjct: 120 TLKISGVSTTKSKRIDDKISACIILQRTLDKINVIK 155
>gi|295106658|emb|CBL04201.1| conserved hypothetical protein TIGR00250 [Gordonibacter pamelaeae
7-10-1-b]
Length = 136
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ++D+G R+G+A+ DPG R A P L +V A + + GLP
Sbjct: 1 MRIMALDIGETRVGVAVCDPGERVASPVCVLPAAEVLSCAKPFRRLLEDWEPELLLCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G EGP+ RA + + + +P F DERL++ A++ L + + ++ K+
Sbjct: 61 YTLAGQEGPQAARIRA-AADAVTKACGIPHEFADERLSSQEAKRSLREKGLGEREMRGKI 119
Query: 137 DSIAAALILQEVLDRIS 153
D IAA+L LQ LD
Sbjct: 120 DMIAASLFLQAWLDARR 136
>gi|209523862|ref|ZP_03272415.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
gi|209495894|gb|EDZ96196.1| Holliday junction resolvase YqgF [Arthrospira maxima CS-328]
Length = 148
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 10 VKSLKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ + P I +D+G +RIG+A D A +VR + + I
Sbjct: 1 MNDIIPKGYISALGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQ 60
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ ++GLP NG G + + + + + + +P + DERLT+V A+Q+L +
Sbjct: 61 VQILVVGLPYLSNGELGTQARQIQKYTR-RLQKSLALPVEYVDERLTSVEAEQMLKGQKI 119
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISF 154
+ +D AAALILQ+ LD+
Sbjct: 120 PLSENKALIDRKAAALILQQWLDQRRN 146
>gi|145594372|ref|YP_001158669.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
gi|145303709|gb|ABP54291.1| Holliday junction resolvase YqgF [Salinispora tropica CNB-440]
Length = 153
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK------VTQTALELLSFITTENI 68
+D+G R+G+A SDP A P L R + V EL + +T
Sbjct: 5 SRGVRLGVDVGQVRVGVARSDPHGVLATPLVTLARDRAVAPEAVPSDMAELAALVTEHEA 64
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP+N+ G +GP +A+V +++ VP DER++TV A + L + V
Sbjct: 65 VEVVVGLPVNLAGRQGPAAVHVQAYVGRLVEVISPVPVTLADERMSTVVASRRLAERGVR 124
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
+++ VD AA ILQ LD
Sbjct: 125 GRRQRAVVDQAAAVEILQSWLD 146
>gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155]
gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185]
gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195]
gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223]
gi|304410066|ref|ZP_07391685.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
gi|307302222|ref|ZP_07581980.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155]
gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185]
gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195]
gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223]
gi|304351475|gb|EFM15874.1| Holliday junction resolvase YqgF [Shewanella baltica OS183]
gi|306914260|gb|EFN44681.1| Holliday junction resolvase YqgF [Shewanella baltica BA175]
gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678]
Length = 141
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ + D GTK IG+AI A P + ++ I ++G
Sbjct: 2 NSKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E H R F + I+ K V DERLTT A+ L ++ +
Sbjct: 62 LPLNMDGTEQDMTHRARKFAN-RINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKG 120
Query: 135 KVDSIAAALILQEVLDR 151
+VD+++A LI++ +
Sbjct: 121 QVDAVSAVLIIESYFEN 137
>gi|294139818|ref|YP_003555796.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
Length = 140
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D GTK IG+AI A+P + E+ I ++GLPL
Sbjct: 5 TVLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+E + F + I + V DERLTT A+ L ++ + +VD
Sbjct: 65 NMDGTEQEITQRAKKFAN-RIKGRFGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123
Query: 138 SIAAALILQEVLDRI 152
+++A LI++ + +
Sbjct: 124 AMSAVLIIESYFETM 138
>gi|325577677|ref|ZP_08147952.1| crossover junction endodeoxyribonuclease [Haemophilus
parainfluenzae ATCC 33392]
gi|325160422|gb|EGC72548.1| crossover junction endodeoxyribonuclease [Haemophilus
parainfluenzae ATCC 33392]
Length = 139
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG A+ A P + + + ++GLPLNM
Sbjct: 6 IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E + F + ++ + + DERLTTVSA+ + R KVD I
Sbjct: 66 DGTEQDLTLRAKKFAN-RLNGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124
Query: 140 AAALILQEVLDRISF 154
+A LIL+ + S
Sbjct: 125 SACLILESWFESYSE 139
>gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
Length = 153
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 67/138 (48%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +D+G R+G+A + A P L + EL SFI E A +GL
Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +NG EG R++ + + +P DERL++V+A + L VS ++ +
Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA IL++ L+ +
Sbjct: 123 VDQVAAQQILEQALEMSN 140
>gi|212550493|ref|YP_002308810.1| Holliday junction resolvase-like protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|226725483|sp|B6YQC7|RUVX_AZOPC RecName: Full=Putative Holliday junction resolvase
gi|212548731|dbj|BAG83399.1| putative Holliday junction resolvase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 138
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G AISDP + ++ +K + +I F++G
Sbjct: 1 MGRIVAIDYGEKRTGFAISDPLKMIVSSFVTVLSRKAVMYL---KNCTENYDIELFVLGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P M+ + + F N+ + DER T+V A +I+I+ V + KR
Sbjct: 58 PRQMDYTPSENMPRVEKFKRNLRRVIPSIDVQMVDERFTSVLAHRIMIEGGVKKIKRQDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD ++AA++LQ L+ +
Sbjct: 118 GLVDRLSAAILLQTYLEFLR 137
>gi|254784479|ref|YP_003071907.1| Holliday junction resolvase-like protein [Teredinibacter turnerae
T7901]
gi|237687105|gb|ACR14369.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
Length = 146
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D GT+ IG+A+ + A P L K +L + ++GLP+
Sbjct: 9 TILAFDFGTRSIGVAVGQTLTQSASELPTLKAKDGIPDWQQLEQLFSDWRPNLVVVGLPV 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GSE R F + ++ + F+DERLTT +A++ R + VD
Sbjct: 69 NMDGSEMEMTRRARKFGN-RLNGRFNQTVAFFDERLTTRAAKEEAAAHGHRGNYRAKPVD 127
Query: 138 SIAAALILQEVL 149
SIAA LIL+ +
Sbjct: 128 SIAARLILEGWM 139
>gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
Length = 135
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A + + + ++ EN+ F+IG
Sbjct: 1 MARILAIDYGKKRTGIAVTDEMQLIASGLTTVRTHDLIKFL---KEYVAKENVELFLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN + F+ + +P DER T+ A Q +ID + +K+R
Sbjct: 58 PKQMNNEASESEALIKEFIRLLTKALPAIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
+D I+A +ILQ L
Sbjct: 118 SLIDEISATIILQSYL 133
>gi|54020386|ref|YP_115692.1| hypothetical protein mhp179 [Mycoplasma hyopneumoniae 232]
gi|62900952|sp|Q601M3|RUVX_MYCH2 RecName: Full=Putative Holliday junction resolvase
gi|148887034|sp|Q4A8G3|RUVX_MYCH7 RecName: Full=Putative Holliday junction resolvase
gi|148887035|sp|Q4AAD2|RUVX_MYCHJ RecName: Full=Putative Holliday junction resolvase
gi|53987559|gb|AAV27760.1| putative holliday junction resolvase [Mycoplasma hyopneumoniae 232]
gi|144227506|gb|AAZ44289.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
Length = 143
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAA 70
+ I ++DLG K G AISD + ++P + R + ++ I+
Sbjct: 1 MGKYNRILALDLGIKTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISI 60
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G PL + G PR F + + + VF DERLTT AQ L+D+ +S K
Sbjct: 61 LVLGYPLTLAGKISPRTKMVEYFADLV-KKNYEIKVVFQDERLTTKQAQTFLLDLGISFK 119
Query: 131 KRIQKVDSIAAALILQEVLD 150
KR + +D +AA +IL+ L+
Sbjct: 120 KRQKVIDKLAAQIILERFLN 139
>gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
Length = 135
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A + + + + E + +IG
Sbjct: 1 MARILAIDYGAKRTGIAVTDELKLIASGLTTVRTHDLESFLKD---YFEKEKVELVLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P ++G+ F++ + F DER T+ A Q +ID + +K+R
Sbjct: 58 PKQVDGTHSENEERIIHFINRFKKVFPTMQFERVDERFTSKMAFQTMIDSGLKKKQRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 118 ALVDEISATIILQTYL 133
>gi|302866802|ref|YP_003835439.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
27029]
gi|302569661|gb|ADL45863.1| Holliday junction resolvase YqgF [Micromonospora aurantiaca ATCC
27029]
Length = 153
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTENI 68
+D+G R+G+A DP A P L R V EL+
Sbjct: 5 SRGVRLGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEA 64
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++GLP+N+ G GP + A+ + D +P DER++TV A + L + V
Sbjct: 65 VGIVVGLPVNLAGKHGPAALNVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVR 124
Query: 129 RKKRIQKVDSIAAALILQEVLD 150
K++ VD AA ILQ LD
Sbjct: 125 GKRQRAVVDQAAAVEILQSWLD 146
>gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 183
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A+S+ A P + R+ + +L I + +
Sbjct: 14 PGQGRRLALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDRILELIDSYDA 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
++GLP ++ G+ V + + R KV P DERLTTV+A
Sbjct: 74 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
L VS KK + +D AA ILQ LD R S L S
Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172
>gi|90415257|ref|ZP_01223191.1| putative holliday junction resolvase [marine gamma proteobacterium
HTCC2207]
gi|90332580|gb|EAS47750.1| putative holliday junction resolvase [marine gamma proteobacterium
HTCC2207]
Length = 145
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++ + D G K+IG+A A L ++ +T ++
Sbjct: 5 TKHKRLLGFDFGLKQIGVASGQTLTLSATGLTILKAVDGIPNWEQVEKLLTEWKPDLVVV 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+ SE + R F + + V DERLT+ A+ + D + +
Sbjct: 65 GLPLNMDDSESDLSNRARKFAR-RLQGRFAVDVEMVDERLTSREAKSLGRDQGT---QDL 120
Query: 134 QKVDSIAAALILQEVLD 150
K+D IAA+LILQ LD
Sbjct: 121 TKIDHIAASLILQSWLD 137
>gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
gi|167012729|sp|A5UAI4|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase
gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
Length = 139
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E R F + + + V DERLTT A+ + + + + KVD I
Sbjct: 66 DGTEQNLTLLARKFAN-RLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKKGKVDGI 124
Query: 140 AAALILQEVLD 150
+A LIL+ +
Sbjct: 125 SACLILESWFE 135
>gi|289523055|ref|ZP_06439909.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503598|gb|EFD24762.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 144
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D+G+ RIG+AISDP FA FL + +L I N+ +IGL
Sbjct: 1 MEHILALDIGSVRIGIAISDPLGIFAQGVGFLNAQGS--WLEDLTLLIRKHNVKKVVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ NG + + + ++ + F+ WDER TT AQ L D +S KK+ +
Sbjct: 59 PIRTNGKKDREADAISDLTDKLKEKFPDITFILWDERFTTTLAQNYLRDSGMSGKKKRNR 118
Query: 136 VDSIAAALILQEVLDRIS 153
VD IAA ++LQ LD +
Sbjct: 119 VDMIAATVLLQSYLDYSN 136
>gi|284052056|ref|ZP_06382266.1| Holliday junction resolvase-like protein [Arthrospira platensis
str. Paraca]
gi|291569994|dbj|BAI92266.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 148
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 10 VKSLKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ + P I +D+G +RIG+A D A +VR + + I
Sbjct: 1 MNDITPKGYISALGLDIGRRRIGVAGCDGTGLIATGLTTIVRTHFEADLAQFQAIIQQRQ 60
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ ++GLP NG G + + + + + + +P ++DERLT++ A+++L +
Sbjct: 61 VQILVVGLPYLSNGELGTQARQIQKYTR-RLQKSLALPVEYFDERLTSIEAEEMLKGQKI 119
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISF 154
+ +D AAALILQ+ LD+
Sbjct: 120 PLSENKALIDRKAAALILQQWLDQRRH 146
>gi|326335222|ref|ZP_08201418.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325692630|gb|EGD34573.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 148
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
LK I +ID GTKR G+A++D + A + ++ + +E++
Sbjct: 9 KLKAQMRILAIDYGTKRCGIAVTDELKLIASALATVETTELLDFL---QQYCQSESVERI 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
IIGLP +G + +F+ + ++ +P +DER T+ A IL++ +KK
Sbjct: 66 IIGLPKQTSGEPSESEAAIVSFMEKLQEKLPEIPVSRYDERFTSKIASHILVESGTKKKK 125
Query: 132 R--IQKVDSIAAALILQEVLDRI 152
R +D I+A LILQ+ L +
Sbjct: 126 RQDKALLDRISATLILQDYLSSL 148
>gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length = 183
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A+S+ A P + R+ + +L I + +
Sbjct: 14 PGQGRRLALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDRILELIDSYDA 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
++GLP ++ G+ V + + R KV P DERLTTV+A
Sbjct: 74 VEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLADERLTTVAATT 133
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
L VS KK + +D AA ILQ LD R S L S
Sbjct: 134 ALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASALRSH 172
>gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Ikeda]
gi|226731634|sp|B3CU37|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase
gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str.
Ikeda]
Length = 157
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I I + +++ + I ID G K++G+AIS+ A P + ++
Sbjct: 1 MIINSIIEFLQAADIKKQILGIDFGEKKVGVAISNIEHTVAMPLQTIFATNQD-RINKIQ 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
NI A +IGLP ++G+E + H + F + + ++ + +P DERLT+ +A
Sbjct: 60 EIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL-LPIFLCDERLTSKAANN 118
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+L N+ RK R D +AA++IL+ L R+ +S
Sbjct: 119 LLKMGNIKRKVRNAIDDRVAASIILEGTLKRMQNSKS 155
>gi|193213626|ref|YP_001999579.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
gi|193087103|gb|ACF12379.1| Holliday junction resolvase YqgF [Chlorobaculum parvum NCIB 8327]
Length = 141
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I ID GTKRIG+A SDP FA P + + L E I ++G
Sbjct: 4 SHKRIIGIDFGTKRIGVAKSDPLGMFAQPVGTFDMEGL---LGALSKIRNEEGIERIVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR-- 132
PL+ G E F + VP DE ++ SA ++L SRKKR
Sbjct: 61 YPLSDKGEENRMTSVVDRFAEELRVALPEVPVETIDEYRSSRSAMKLLAGSGASRKKRNE 120
Query: 133 IQKVDSIAAALILQEVLDRIS 153
++D+ AA LILQ LD +
Sbjct: 121 KGRLDTAAACLILQSWLDSRA 141
>gi|301154797|emb|CBW14260.1| predicted Holliday junction resolvase [Haemophilus parainfluenzae
T3T1]
Length = 139
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG A+ A P + + + ++GLPLNM
Sbjct: 6 IAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIEKCLKDWKPDVIVVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+E + F + ++ + + DERLTTVSA+ + R KVD I
Sbjct: 66 DGTEQDLTLRAKKFAN-RLNGRFGIKVELQDERLTTVSARDEIFQRGGYRALNKGKVDGI 124
Query: 140 AAALILQEVLDRISF 154
+A LIL+ + S
Sbjct: 125 SACLILESWFENYSE 139
>gi|303241625|ref|ZP_07328124.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
gi|302590845|gb|EFL60594.1| Holliday junction resolvase YqgF [Acetivibrio cellulolyticus CD2]
Length = 140
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGL 75
I ID G RIG+A+SDP A + K + ++ + I+G
Sbjct: 1 MRIIGIDYGDSRIGIAVSDPLGWTAQGIETISWKNDIEEPIKRIVELVNLYEAKKLIVGF 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NMNG+ GPR T F+ + R + + WDERL+TVSA + + ++ V + K+
Sbjct: 61 PKNMNGTIGPRGEKTNDFIELITARIEGIQIIKWDERLSTVSANRTMHELGVKKSKKKHV 120
Query: 136 VDSIAAALILQEVLDR 151
VD IAA ILQ LD
Sbjct: 121 VDQIAAVYILQGYLDS 136
>gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
gi|226725499|sp|B3EPT4|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase
gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
Length = 144
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + I +ID G KR GLA +DP FA P +K+ SF+ ++ I+G
Sbjct: 5 PIKRILAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKIITII---KSFLQENSVEKIIVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK--R 132
PLN +G++ P F+ + +P DE ++ A ++LI+ +SRKK R
Sbjct: 62 YPLNSDGTKNPMTGIIDGFIEELSAAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQR 121
Query: 133 IQKVDSIAAALILQEVLDR 151
++DS AA L+LQ L+
Sbjct: 122 KGRLDSAAACLLLQHYLEN 140
>gi|307152105|ref|YP_003887489.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
gi|306982333|gb|ADN14214.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7822]
Length = 142
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G +R+G+A D A +VR +L + ++GLP M
Sbjct: 7 LGLDVGKRRVGVAGCDGLGLIATGLTTIVRSSFVADVEQLKQLVQQREAKILVVGLPYCM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG G + + + I + + +P + DERLT+ A++ L + +D
Sbjct: 67 NGDIGSQARQVQNYA-TRIGKALQLPIEYVDERLTSYQAEEELKAQKRFSTRNKGLIDRQ 125
Query: 140 AAALILQEVLD 150
AAA+ILQ+ LD
Sbjct: 126 AAAIILQQWLD 136
>gi|262273737|ref|ZP_06051550.1| putative Holliday junction resolvase [Grimontia hollisae CIP
101886]
gi|262222152|gb|EEY73464.1| putative Holliday junction resolvase [Grimontia hollisae CIP
101886]
Length = 143
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ Q + D GTK IG+AI A P L K + + + + +
Sbjct: 1 MSNIQTVLGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEAILKEWAPDLVV 60
Query: 73 IGLPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+GLPL+++G E R F + + + V DERLTT A+ L + +
Sbjct: 61 VGLPLDLHGGELETITPRARKFAN-RLKGRFGVNVELHDERLTTTEARASLFEYGGYKAL 119
Query: 132 RIQKVDSIAAALILQEVLDR 151
++DS +A +I++ +
Sbjct: 120 GKGEIDSQSAVIIVESWFEN 139
>gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
Length = 149
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
KP + + D G+K IG+A A P + + L I II
Sbjct: 8 KPLKSLMGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLII 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+E + F + + + V DERLTT SA++ + ++ +
Sbjct: 68 GLPLNMDGTEQYITQRAKKFAN-RLHGRFGVKIALQDERLTTASAKEFIFELGGYKALDK 126
Query: 134 QKVDSIAAALILQEVL 149
K+DS++AALIL+ +
Sbjct: 127 GKIDSVSAALILESWM 142
>gi|73667182|ref|YP_303198.1| hypothetical protein Ecaj_0565 [Ehrlichia canis str. Jake]
gi|146325572|sp|Q3YRQ5|RUVX_EHRCJ RecName: Full=Putative Holliday junction resolvase
gi|72394323|gb|AAZ68600.1| Conserved hypothetical protein 250 [Ehrlichia canis str. Jake]
Length = 156
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I++ VK + + I +D G K+IG+A+SD A P +++ + L
Sbjct: 1 MLYKSIDEFVKVIDKKKRIIGLDFGEKKIGIALSDKTNLVAIPYSVYIKRSTRKDLGSLY 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ N+ + +IG P+ ++G E + +I + + DER +T A +
Sbjct: 61 NIFVENNVGSMVIGWPIELSGIESELCQKVVLLANRIIAKYK-INIYLHDERYSTAMATR 119
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ N+ RK+ D IAA LILQ+VLD
Sbjct: 120 VAKLANIKRKESQSIDDKIAAMLILQQVLD 149
>gi|21672923|ref|NP_660988.1| hypothetical protein CT0082 [Chlorobium tepidum TLS]
gi|32130037|sp|Q8KG86|RUVX_CHLTE RecName: Full=Putative Holliday junction resolvase
gi|21645979|gb|AAM71330.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 142
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++ I ID GTKRIG+A+SDP R FA P + + + + E I ++
Sbjct: 4 SSHKRIIGIDFGTKRIGVALSDPLRMFAQPLGTFDMEGLVRVLSRVR---DDEGIELVVV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR- 132
G P++ G E FV + + +DE ++ +A +IL SRKKR
Sbjct: 61 GYPMSDKGEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKKRN 120
Query: 133 -IQKVDSIAAALILQEVLDRIS 153
++D+ AA LILQ LD S
Sbjct: 121 EKGRLDTAAACLILQGYLDSHS 142
>gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
Length = 143
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +ID GTKR G+A++DP + A + + + E + AF+IG P
Sbjct: 1 MRLLAIDYGTKRTGIAVTDPLQIIASGLCTVETSTLLAFL---KQYTAEEAVEAFVIGQP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
MN + + F+ + +P DER T+ A Q +ID + +K+R
Sbjct: 58 KRMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKA 117
Query: 135 KVDSIAAALILQEVL 149
+D I+A +ILQE L
Sbjct: 118 LIDEISATIILQEFL 132
>gi|308233743|ref|ZP_07664480.1| Holliday junction resolvase YqgF [Atopobium vaginae DSM 15829]
gi|328943733|ref|ZP_08241198.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
gi|327491702|gb|EGF23476.1| Holliday junction resolvase [Atopobium vaginae DSM 15829]
Length = 141
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G R+G+A+SD A P L ++V A + + GLP
Sbjct: 1 MRVLALDIGEVRVGIAVSDASETLAMPVKVLPFQEVYTHARTFRRVLEDYEPDLLVCGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G G + I R + F DERL++ A++IL + S K+ +
Sbjct: 61 RTLAGDVGAQAQKLMEQAQ-TIARACNLDVTFVDERLSSAQAKRILREQGYSEKQMRGHI 119
Query: 137 DSIAAALILQEVLDRIS 153
D IAA+L LQ LD
Sbjct: 120 DMIAASLFLQAWLDERR 136
>gi|315181242|gb|ADT88156.1| Holliday junction resolvase-like protein [Vibrio furnissii NCTC
11218]
Length = 141
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I +IGL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFAQ-RLHGRFGLPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD +A +IL+ +R+
Sbjct: 121 NVDCQSAVIILESWFERL 138
>gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
Length = 158
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
ID+G R+G+A+SDP A P L R + L+ + + +
Sbjct: 10 PGPGRRLGIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVV 69
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P + G GP + ++ + +R VP V+ DERLTTV+A ++L V KK+
Sbjct: 70 VGMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQ 129
Query: 133 IQKVDSIAAALILQEVLDRI 152
VD AA ILQ LD
Sbjct: 130 RAVVDQAAAVEILQAWLDSR 149
>gi|332666753|ref|YP_004449541.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
gi|332335567|gb|AEE52668.1| Holliday junction resolvase [Haliscomenobacter hydrossis DSM 1100]
Length = 135
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID GTKR G+A++DP + A + ++ + E++ AF++G P N+
Sbjct: 1 MAIDYGTKRTGIAVTDPLQIIASGLDTVPTTELMNFL---RQYCQEEDVEAFVVGEPKNL 57
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--VD 137
+ + H AFV + + + DER T+ A + + SRKKR K VD
Sbjct: 58 DDTPAQIHHLVMAFVAQIENLFPDKRVILRDERFTSKDATRSIRQSVPSRKKRRDKGLVD 117
Query: 138 SIAAALILQEVLDRISF 154
++A +ILQE L++ +
Sbjct: 118 KVSAVIILQEYLEKYKY 134
>gi|330466939|ref|YP_004404682.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
gi|328809910|gb|AEB44082.1| holliday junction resolvase yqgf [Verrucosispora maris AB-18-032]
Length = 152
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFI 63
+ L +D+G RIG++ SDP A P + R+ V + +E+ + +
Sbjct: 1 MTELSRGVR-LGVDVGQVRIGVSRSDPHGVLATPLVTVAREQKPRPDAVPKDLVEIAALV 59
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
++GLP+N+ G GP +A+ + + VP DER++TV A + L
Sbjct: 60 VEHEAVEVVVGLPVNLAGRHGPAAEHVKAYARQLAEVIAPVPVTLTDERMSTVVASRRLA 119
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ V KK+ VD AA ILQ LD
Sbjct: 120 ERGVRGKKQRAVVDQAAAVEILQSWLD 146
>gi|239996734|ref|ZP_04717258.1| Holliday junction resolvase-like protein [Alteromonas macleodii
ATCC 27126]
Length = 143
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ + + D GTK IG+A+ A P L + + ++GL
Sbjct: 6 NRTVLAFDFGTKSIGVAVGQEITGTASPLAALKARDGIPDWTLIEKLYEEWQPQIVVVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+E R F + + + V DERLTT A+ +L ++ +K K
Sbjct: 66 PLNMDGTEQEMTQRARKFAN-RLHGRFKVAVDTCDERLTTTDAKAMLFELGGYKKLTKDK 124
Query: 136 VDSIAAALILQEV 148
VDS++A +I
Sbjct: 125 VDSVSACVIFASW 137
>gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206278|gb|ADL10620.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis C231]
gi|302330835|gb|ADL21029.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis 1002]
gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium
pseudotuberculosis I19]
Length = 197
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
N ID+GT RIG+A SD R A P + RK + LL I +
Sbjct: 13 PGNGRRLGIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDRLLEIIREYAV 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILID 124
++GLP ++ G+ V + + + +P DERLTTV A Q L
Sbjct: 73 VEVVVGLPRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLTTVVATQALRA 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
+S K + +D AA ILQ LD
Sbjct: 133 SGISEKTGRKVIDQAAAVEILQSWLD 158
>gi|190410280|ref|YP_001965781.1| yqgF [Klebsiella pneumoniae]
gi|17046115|dbj|BAB72159.1| hypothetical protein [Escherichia coli]
gi|146151073|gb|ABQ02839.1| yqgF [Klebsiella pneumoniae]
gi|225730204|gb|ACO24916.1| hypothetical protein [Enterobacter aerogenes]
gi|225730218|gb|ACO24929.1| hypothetical protein [Escherichia coli]
Length = 140
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I D GTK IG+AI A P L E+ + ++G
Sbjct: 2 SSRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G++ R F + + + P F DERLTT A+ L + +
Sbjct: 62 LPLNMDGTDQEITVRARKFGN-RLHGRFGKPVEFKDERLTTTDARARLFERGGYKALDKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD ++A LI++ ++
Sbjct: 121 SVDGVSAQLIVEAWMEE 137
>gi|332290888|ref|YP_004429497.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
gi|332168974|gb|AEE18229.1| Holliday junction resolvase YqgF [Krokinobacter diaphorus 4H-3-7-5]
Length = 136
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR G+A++D + A + K + +++ E + A +IG
Sbjct: 1 MARIIAIDYGTKRTGIAVTDELQMIASGLTTVETKDIFTFL---KKYLSEEKVEAMVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN F ++ + + + DER T+ A Q ++D + +KKR
Sbjct: 58 PKRMNNEASDVEVDIVRFRESVEKKHPELTIIRQDERFTSKMAFQTMLDSGIGKKKRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +ILQ+ L
Sbjct: 118 ALVDQISATIILQDYL 133
>gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1]
gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1]
Length = 152
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
IDLG R+GLA+SDPG FAHP V E+L I N+ +IGLPL
Sbjct: 3 WLGIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRK------------VYVPFVFWDERLTTVSAQQILIDM 125
++G+EG + N+I R V+ DERLTTVSA + L+
Sbjct: 63 QLDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRIS 153
++S KK VD +A LILQ LD +
Sbjct: 123 DLSTKKHRPMVDQQSAVLILQSALDANN 150
>gi|260767462|ref|ZP_05876399.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972]
gi|260617574|gb|EEX42756.1| putative Holliday junction resolvase [Vibrio furnissii CIP 102972]
Length = 141
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I +IGL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPDLLVIGL 61
Query: 76 PLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALESITPRAKKFAQ-RLHGRFGLPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD +A +IL+ +R+
Sbjct: 121 NVDCQSAVIILESWFERL 138
>gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae
UW101]
gi|189046096|sp|A5FGX1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase
gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101]
Length = 138
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR G+A++D + A + + + + E + A +IG
Sbjct: 1 MPRILSIDYGQKRTGIAVTDEMQIIASGLTTIPTHTLIDFLKD---YFAKEKVEAVLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MNG FV + + + + DER T+ A Q ++D +S+K+R
Sbjct: 58 PKQMNGQPSESASVINGFVTHFSNIFPDMKVIRVDERFTSKMAFQTMLDSGLSKKQRQNK 117
Query: 134 QKVDSIAAALILQEVLDRISF 154
+D I+A ++LQ+ L F
Sbjct: 118 GLIDEISATIMLQDYLSSKRF 138
>gi|149911576|ref|ZP_01900189.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
gi|149805355|gb|EDM65367.1| Holliday junction resolvase-like protein [Moritella sp. PE36]
Length = 148
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D GTK IG+A+ A P + I I+G P
Sbjct: 9 RTLLGFDFGTKSIGIAVGQEITGTARPLVAFKANDGIPDWDLIEKQIKEWQPDLVIVGKP 68
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+G+E F + + + V DERLTT A+ L + + + +
Sbjct: 69 LNMDGTEQEITKRATKFAN-RLTGRFNVKTEMHDERLTTKDAKARLFEEGGFKALQKGAI 127
Query: 137 DSIAAALILQEVLD 150
DS +A +IL+ ++
Sbjct: 128 DSASAMVILESWME 141
>gi|295134936|ref|YP_003585612.1| Holliday junction resolvase-like protein [Zunongwangia profunda
SM-A87]
gi|294982951|gb|ADF53416.1| Holliday junction resolvase-like protein [Zunongwangia profunda
SM-A87]
Length = 134
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D G KR G+A++D + A + + + + E + ++G
Sbjct: 1 MARVMALDYGVKRTGIAVTDELQMIASGLTTVDTSSLLNFLED---YFKKEKVETVVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P + S F+ ++ + V DER T+ A Q +ID + +KKR
Sbjct: 58 PKQKDNSASQSEVFIAEFLKKFTEKFPEMKLVRVDERFTSKMAFQTMIDSGLKKKKRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD ++A +ILQ L
Sbjct: 118 ALVDEVSATIILQSYL 133
>gi|153835257|ref|ZP_01987924.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148868232|gb|EDL67372.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 141
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFAN-RLHGRYGLPVELHDERLSTAEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFESL 138
>gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810]
gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium
DSM 4810]
Length = 181
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P +D+G R+GLA SD A P L R +E + ++G
Sbjct: 15 PRGVRLGVDVGDVRVGLARSDLDGMIATPVETLERGSAVARVVEEARELEAR---VIMVG 71
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRK 130
LP ++NG+EG R F ++ P DERLTTV+A Q L +
Sbjct: 72 LPRSLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTVTAHQALHRSGRKGR 131
Query: 131 KRIQKVDSIAAALILQEVLDRISFLESSKG 160
K VD +AA +ILQ+ LD + G
Sbjct: 132 KHRSVVDQVAAVMILQQALDTERATGARAG 161
>gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
Length = 143
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +ID GTKR G+A++DP + A + L + E + AF+IG P
Sbjct: 1 MRLLAIDYGTKRTGIAVTDPLQIIASGLCTVE---TPTLLAFLKQYTAEEAVEAFVIGQP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
MN + + F+ + +P DER T+ A Q +ID + +K+R
Sbjct: 58 KRMNSEDSSVEAEIQKFISKLQQEFPEIPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKA 117
Query: 135 KVDSIAAALILQEVL 149
+D I+A +ILQE L
Sbjct: 118 LIDEISATIILQEFL 132
>gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii
ATCC 12478]
Length = 141
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 54/126 (42%)
Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRV 87
RIG+A SDP A P + R + + L++ ++GLP + GP
Sbjct: 2 RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61
Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
+ R P DERLTTVSAQ+ L + K++ +D AA ILQ
Sbjct: 62 QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121
Query: 148 VLDRIS 153
LD+
Sbjct: 122 WLDQRR 127
>gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
Length = 142
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID G KR+GLA+SD P + R ELL++I T I A +IGLP
Sbjct: 1 MRYLGIDFGLKRVGLALSDSQATVVTPLATVQRSTRQALFEELLAYIETYAIEAVVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++ G+ R F + R++ +P + DE LT+ A + L + V R KR +
Sbjct: 61 YDLEGTATLTTRQARNFG-TSLARRIALPIYYVDEVLTSEFAGEALREAGVPRHKRKDLL 119
Query: 137 DSIAAALILQEVL 149
D AA IL+ L
Sbjct: 120 DQHAAVAILESFL 132
>gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
Length = 153
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 67/138 (48%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +D+G R+G+A + A P L + EL SFI E A +GL
Sbjct: 3 SGRLIGVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +NG EG R++ + + +P DERL++V+A + L VS ++ +
Sbjct: 63 PRLLNGKEGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKM 122
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA IL++ ++ +
Sbjct: 123 VDQVAAQQILEQAIEMSN 140
>gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
Length = 137
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+A++D + A + + + + + E + + IIG
Sbjct: 1 MPRILAIDYGIKRTGIAVTDEMQMIAFGLTTIPSETAITFLKD---YFSKEKVESVIIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MNG AFV + +P DER T+ A Q +ID +++K+R
Sbjct: 58 PKQMNGEPSQSTDIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNK 117
Query: 134 QKVDSIAAALILQEVLDR 151
VD IAA +ILQ+ L
Sbjct: 118 ALVDEIAATIILQDYLRY 135
>gi|269960441|ref|ZP_06174814.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3]
gi|269834868|gb|EEZ88954.1| Holliday junction resolvase-like protein [Vibrio harveyi 1DA3]
Length = 141
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFAN-RLQGRYGLPVELHDERLSTAEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFESL 138
>gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
Length = 170
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLPLN 78
+D+GT R+G+A+SDP A P L R + + ++GLPLN
Sbjct: 7 LGVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M G + + RA+ + + + + + DERLT+VSA Q L V+ ++ Q VD
Sbjct: 67 MKGEDTASTQAARAWANTLKRLRPALRVILVDERLTSVSAHQSLHASGVAGREHRQHVDQ 126
Query: 139 IAAALILQEVLD 150
AA LILQ L+
Sbjct: 127 QAAVLILQAALE 138
>gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
Length = 142
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ID G KR G+A+SD G A PR ++ + ELL+ I E A +IGLP
Sbjct: 1 MKYLAIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFEELLALIEAEATDAIVIGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+N++G E R F + R+ +P + +E L++ A++ L D S + +
Sbjct: 61 INLDGEESLTTRQVRNFSK-SLARRTTLPLFWMEEALSSYEAERDLRDAGRSAAQGRAVL 119
Query: 137 DSIAAALILQEVLDR 151
D AA ILQ LD+
Sbjct: 120 DQQAAVRILQSFLDQ 134
>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
gi|226725511|sp|B1I373|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
Length = 141
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +D+G +RIG+A++D A+P L R + + I + + GLP
Sbjct: 1 MRLMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++G GP+ +F+ + + VP + WDERLTT +++L+ ++ R++R + V
Sbjct: 61 KTLSGQIGPQGDKVLSFLD-KLRVRSTVPVITWDERLTTAEVEKLLVSADLGRRRRRKVV 119
Query: 137 DSIAAALILQEVLDRISFLESS 158
D +AA LIL L+ ++
Sbjct: 120 DKLAATLILNSYLNSRKSGRNT 141
>gi|317503056|ref|ZP_07961135.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
gi|315665829|gb|EFV05417.1| putative Holliday junction resolvase [Prevotella salivae DSM 15606]
Length = 146
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I SID G KR GLA++D + A+ + + L +I E + +IG
Sbjct: 1 MARILSIDYGKKRTGLAVTDSLQIIANGLATV---STSILIDFLKDYIAKETVELIVIGR 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KR 132
P+ +G+ + FV+ VP ++DER T+V A ++++D + +K +R
Sbjct: 58 PVKPDGTPSENLARVEQFVNRWRKLMPKVPIEYYDERFTSVIAHKVVLDSGIKKKARRER 117
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
VD I+A +ILQ+ + +
Sbjct: 118 KGLVDEISATIILQDFMQYKRSM 140
>gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
Length = 138
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A SDP A + R + ++ E + GL
Sbjct: 1 MKKFIGLDIGDVRIGVAKSDPLGILATGLEVIDR-NTVNPVQRIKEILSDEGTKKIVAGL 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G++ + FV + + + + DER TT A+ L + + K+R +
Sbjct: 60 PKSLDGTKKRQAEKVEEFVAELKESIPDIEVIMVDERYTTTEAEHYLKNYSKKNGKERRK 119
Query: 135 KVDSIAAALILQEVLDRI 152
VD +AA++ILQ+ LDRI
Sbjct: 120 VVDMVAASIILQKYLDRI 137
>gi|27904966|ref|NP_778092.1| hypothetical protein bbp492 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|32130020|sp|Q89A50|RUVX_BUCBP RecName: Full=Putative Holliday junction resolvase
gi|27904364|gb|AAO27197.1| hypothetical 16.0 kDa protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 137
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D GTK IG+A+ A P + K +L I A ++G PLN
Sbjct: 3 IIALDFGTKNIGVAVGQNYTNTARSLPSIKVKNKKLNIEKLNKLIDEWKPNAIVVGHPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G++ + F + +P + DERL+TV A+ IL + + + +++DS
Sbjct: 63 IDGTKQKITQCSENFSK-KLKNIFKIPILLHDERLSTVEAKAILFEKYGYKSLKKERIDS 121
Query: 139 IAAALILQEVL 149
++A +IL+
Sbjct: 122 MSAVIILESWF 132
>gi|294669544|ref|ZP_06734611.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308457|gb|EFE49700.1| hypothetical protein NEIELOOT_01443 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 154
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + D G RIG+A AHP + + + + I ++G
Sbjct: 9 PAGTCLAFDFGEARIGVAQGGAEVGIAHPLQTVSGEGNERKFAAIARLIEEWRPDYLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+E R F + + +P + DERLT++ A+ +L + V +K+
Sbjct: 69 LPVHSDGTEHELTRLARKFGR-RLHGRFGLPVYWADERLTSLYAESLLGEAQVFGRKQKA 127
Query: 135 KVDSIAAALILQEVL 149
DS+AA ILQ
Sbjct: 128 VSDSVAAQAILQGFF 142
>gi|289450300|ref|YP_003474401.1| YqgF family RNAse H domain-containing protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184847|gb|ADC91272.1| RNAse H domain protein, YqgF family [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 140
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
+ ID G RIG+A+SD A ++ T+ + +AA +I
Sbjct: 1 MEKYLGIDYGQARIGVAVSDALGITARGIETICWNGEEFTKPVNRICELAKQNGVAAIVI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP +G G R ++ + ++ DER TTV A ++L + V ++++
Sbjct: 61 GLPRRTDGKIGVSEEKARQLGD-LLQELTGLNIIWRDERYTTVLAHRVLNESTVKKRQKR 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
VD +AA +ILQ+ L+ +
Sbjct: 120 SVVDQVAAEIILQDFLESLR 139
>gi|187735685|ref|YP_001877797.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
BAA-835]
gi|187425737|gb|ACD05016.1| Holliday junction resolvase YqgF [Akkermansia muciniphila ATCC
BAA-835]
Length = 141
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ P ID G RIG+A +DP AHP + R T ++ + I +
Sbjct: 1 MTSPHPALGIDYGEARIGIAATDPVGIMAHPVETIHRH-QTDGISRIVQLVQERGIRTLV 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP+ M+G+EG RAF + +P +F DE LTTV AQ+ L K
Sbjct: 60 LGLPVRMDGTEGTAAAKVRAFGRELAAALPGLPLIFMDECLTTVIAQEKLHAAGKKAKNF 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+D +AA IL LD
Sbjct: 120 RPIIDQVAAVEILNTWLDS 138
>gi|163803740|ref|ZP_02197598.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
gi|159172459|gb|EDP57327.1| Holliday junction resolvase-like protein [Vibrio sp. AND4]
Length = 141
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++G
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGY 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFAN-RLHGRYGLPVELHDERLSTTEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFESL 138
>gi|311696400|gb|ADP99273.1| Holliday junction resolvase [marine bacterium HP15]
Length = 131
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GT+RIG+A+ P + + ++ S + ++GLPLNM
Sbjct: 1 MAFDFGTRRIGVAVGQELLGSGQPVALIPARDGIPDWQQIESLLEEWRPDLVVVGLPLNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ +E R F + + +VP DERLT+ A+ ++ SR VD
Sbjct: 61 DDTENDMCARARKFGK-RLHGRYHVPVEMVDERLTSFEAKGEVMAAGGSRDFGRHGVDDR 119
Query: 140 AAALILQEVLDR 151
AA LIL+ +
Sbjct: 120 AAVLILETFFQQ 131
>gi|332975378|gb|EGK12272.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Desmospora sp. 8437]
Length = 141
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +DLG KR+G+A+SDP A L R+ L I + A ++GL
Sbjct: 1 MTRIMGLDLGEKRVGVAVSDPMGWTAQGVDVL-RRDQPDWMDRLARLIEDYEVEALVVGL 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+GS G + + R ++ + +P WDERL+TV+ ++ LID ++SR+KR +
Sbjct: 60 PRNMDGSIGAKGEACRQLGR-ELEERFQIPVELWDERLSTVAVERTLIDADLSRRKRRKV 118
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA+ ILQ L+
Sbjct: 119 VDRMAASWILQGYLEARR 136
>gi|146296781|ref|YP_001180552.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|167012707|sp|A4XKC6|RUVX_CALS8 RecName: Full=Putative Holliday junction resolvase
gi|145410357|gb|ABP67361.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 138
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G++RIG+AISDP + A P L +K L I +IG P
Sbjct: 1 MRILCLDIGSRRIGVAISDPLKIAAQPFCVLDLQKEDLY-SCLDKIFNEHQIEKIVIGYP 59
Query: 77 LNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
++ + + ++R+ V + WDER +T + ++IL + NVS +KR +
Sbjct: 60 VSKFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSWQKRKKV 119
Query: 136 VDSIAAALILQEVLDRIS 153
VD +AA ILQ LD I+
Sbjct: 120 VDKLAAVYILQGYLDFIN 137
>gi|298373387|ref|ZP_06983376.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274439|gb|EFI15991.1| Holliday junction resolvase [Bacteroidetes oral taxon 274 str.
F0058]
Length = 138
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID GTKR+G+A++DP A + ++ E ++T + +IG
Sbjct: 1 MARILAIDYGTKRVGVAVTDPLGMIAGALATVETPRIFDFLNE---YLTVNDCNRLVIGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL + F+ Y+ + +DER T+ A ++ + R+KR
Sbjct: 58 PLTLRNEPAEVTREIDRFIERFALLYPYIEVIKYDERFTSKLAFDTILASGIGRRKRRDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D I+A +ILQ L+ IS
Sbjct: 118 AVIDRISATIILQNYLESIS 137
>gi|228472378|ref|ZP_04057143.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
gi|228276246|gb|EEK14981.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
Length = 135
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +ID GTKR G+A++D + A + ++ + E + I+GLP
Sbjct: 1 MRILAIDYGTKRCGIAVTDELKLIASALATVETTELLDFLE---KYCQAEQVERIIVGLP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
++G + F+ + ++ +P +DER T+ A IL+ +KKR
Sbjct: 58 KQVSGELSESEQAIAPFIEKLQEKLPKIPVSRYDERFTSKIASHILVQSGTKKKKRQDKA 117
Query: 135 KVDSIAAALILQEVLDRI 152
+D I+A LILQ+ L +
Sbjct: 118 LLDRISATLILQDYLSSL 135
>gi|77163898|ref|YP_342423.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
gi|254435808|ref|ZP_05049315.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
AFC27]
gi|146325583|sp|Q3JE53|RUVX_NITOC RecName: Full=Putative Holliday junction resolvase
gi|76882212|gb|ABA56893.1| Holliday junction resolvase YqgF [Nitrosococcus oceani ATCC 19707]
gi|207088919|gb|EDZ66191.1| conserved hypothetical protein TIGR00250 [Nitrosococcus oceani
AFC27]
Length = 152
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + D G + IG+A+ A+P L + ++ I N I+
Sbjct: 11 SKPRIVLGFDFGLRYIGVAVGQEVTHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLIV 70
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+ SE + R F + + + + + DERL+TV A++ L ++ S R
Sbjct: 71 GLPLNMDQSEQFLTKAARRFG-HRLHGRYGLAVEWVDERLSTVEARERL-NIKSSASGRR 128
Query: 134 QKVDSIAAALILQEVLDRISFLES 157
Q +D +AA ILQ L +
Sbjct: 129 QGIDQMAAQCILQTWLTEQQTIRH 152
>gi|116670824|ref|YP_831757.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
gi|116610933|gb|ABK03657.1| Holliday junction resolvase YqgF [Arthrobacter sp. FB24]
Length = 199
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII- 73
P +D+GT R+G+A+ D A P L R T + +L+ + +E A +
Sbjct: 11 PRGIKLGVDVGTVRVGVAVCDRDGILATPLKTLERNAKKNTDVRVLAGLASELGAVQVFV 70
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP + G E + + + R +P DERL+TV+A + L + +S
Sbjct: 71 GLPRTLKGEEHASARMATDYAELLAEALAARGSDIPVQLVDERLSTVTAHRNLHEAGMSS 130
Query: 130 KKRIQKVDSIAAALILQEVLD 150
+ + VD +AAA ILQ +D
Sbjct: 131 RNHRKVVDQVAAAGILQHAID 151
>gi|315924762|ref|ZP_07920979.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621661|gb|EFV01625.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 143
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I +D+G K +G+A+SD A + +T NI + GLP
Sbjct: 4 KILGLDIGDKYVGIAVSDALGVTAQGYRTYKKADRNADLAFFGDVVTQFNIKTAVAGLPK 63
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+M+G E +V T+ + + + +++ + ++ DERLTT +++ +LI V R+ R Q +D
Sbjct: 64 DMDGRETAQVRKTKNYCNF-LAKRLGLEVIYIDERLTTRASEAVLIAGGVRRENRKQHID 122
Query: 138 SIAAALILQEVLDRIS 153
+++A LILQ LDR +
Sbjct: 123 TLSAQLILQMYLDREN 138
>gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
Length = 156
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAF 71
+ P +DLG R+GLA+SDP FAHP V E+L+ I E++
Sbjct: 1 MIPPVVWLGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQ 119
I+GLPL M+G+EG R + N+ R DERLTTVSA
Sbjct: 61 IVGLPLQMDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAH 120
Query: 120 QILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ L + + + K VD +A +ILQ LDR
Sbjct: 121 RQLFEAHKASNKHRPVVDQQSAVVILQTALDRTRE 155
>gi|91228684|ref|ZP_01262598.1| Holliday junction resolvase-like protein [Vibrio alginolyticus
12G01]
gi|262393233|ref|YP_003285087.1| putative Holliday junction resolvase [Vibrio sp. Ex25]
gi|91187755|gb|EAS74073.1| Holliday junction resolvase-like protein [Vibrio alginolyticus
12G01]
gi|262336827|gb|ACY50622.1| putative Holliday junction resolvase [Vibrio sp. Ex25]
Length = 141
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + R F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRARKFAK-RLQGRYGLPVELHDERLSTAEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
VD +A +IL+ + +
Sbjct: 121 NVDCQSAVVILESWFEAL 138
>gi|319951884|ref|YP_004163151.1| holliday junction resolvase [Cellulophaga algicola DSM 14237]
gi|319420544|gb|ADV47653.1| Holliday junction resolvase [Cellulophaga algicola DSM 14237]
Length = 136
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D G R G+A++D + A + K++ +++ TE + ++G
Sbjct: 1 MARIVALDYGKVRTGIAVTDELQLIASGLTTVATKELIDFL---KNYVATEKVELLVVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN F+ + + DER T+ A Q +ID + +K+R K
Sbjct: 58 PKQMNNQVSESEALILPFIEKLKASFPTIKIERQDERFTSKMAFQTMIDSGLKKKQRRDK 117
Query: 136 --VDSIAAALILQEVLDRI 152
VD I+A +ILQ L+RI
Sbjct: 118 ALVDEISATIILQAYLNRI 136
>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
Length = 137
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A SD A P + R + + EN ++G+
Sbjct: 1 MKKYLGLDVGDVRIGVAKSDILGILATPLEVINRNDTDP-VKRIKELLQQENTNGLVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G+ +V F+ + + + DER TTV A+ L + + ++R +
Sbjct: 60 PKSLDGTVKRQVEKVNEFIEELKKNIDNLEIITVDERYTTVEAEHYLRNYSKKNPRERRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ+ LD
Sbjct: 120 VVDMVAASIILQKFLD 135
>gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway
5J108-111]
gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuG_Q212]
gi|226725507|sp|B6J3V7|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase
gi|226725508|sp|A9KDE8|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase
gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
Length = 141
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G KRIG+A+ A+ L + ++ I T + ++G+P NM
Sbjct: 9 LGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLVVGIPYNM 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GSE + R F + + +P DERLTT+ A++ + ++ KR Q +D+
Sbjct: 69 DGSEQTLTFAARKFAR-KLQTRFGLPVSMVDERLTTIEAKRQWYEQGLT--KRPQHLDNY 125
Query: 140 AAALILQEVL 149
AA LIL++ L
Sbjct: 126 AAKLILEQWL 135
>gi|25028303|ref|NP_738357.1| Holliday junction resolvase-like protein [Corynebacterium efficiens
YS-314]
gi|23493587|dbj|BAC18557.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 204
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68
+D+GT RIG+A SD R A P + R+ + L+ IT +
Sbjct: 36 PGPGRRIGLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDA 95
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILID 124
++GLP ++ G+ V R + R +P DERLTTV A Q L
Sbjct: 96 VEVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRA 155
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
++ + + +D AA ILQ LD
Sbjct: 156 SGINERDGRKVIDQAAAVEILQTWLD 181
>gi|212636354|ref|YP_002312879.1| Holliday junction resolvase-like protein [Shewanella piezotolerans
WP3]
gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans
WP3]
Length = 140
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ + D GTK IG+AI A P + E+ + IT ++G
Sbjct: 2 SSKTVLGFDYGTKSIGIAIGQQLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+G+E + F + ++ + V V DERLTT A+ L +M +
Sbjct: 62 LPLNMDGTEQDITLRAKKFGN-RLNGRFGVKVVTQDERLTTADAKARLFEMGGYKALTKG 120
Query: 135 KVDSIAAALILQEVLDR 151
+VD+++A LI++ +
Sbjct: 121 QVDAMSAVLIIESYFEN 137
>gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
Length = 137
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +IDLGTKR GLA++DP + A+P + K+ ++I E + ++GL
Sbjct: 1 MPRVLAIDLGTKRTGLAVTDPLKMLANPLETIETFKLIDFI---KAYIAKEEVDTLVLGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +NG + A + DER T+ A Q +I M +K R +K
Sbjct: 58 PTKLNGKDNEMTPKVMAMKTKLEKNFPSQKVELVDERFTSKMAMQSMITMGSKKKDRREK 117
Query: 136 ---VDSIAAALILQEVLDR 151
+D ++AA+ILQ L+R
Sbjct: 118 AGNLDKVSAAIILQSYLER 136
>gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
Length = 142
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G R G+A+SD R A P L +V A + + GLP M
Sbjct: 4 LALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQTM 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G EGP+ R I +P F DERLT+ A++IL + ++ K+ KVD I
Sbjct: 64 SGEEGPQAEHIREVAG-RIAAATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGKVDMI 122
Query: 140 AAALILQEVLDR 151
+A+L LQ LD
Sbjct: 123 SASLFLQAWLDS 134
>gi|307824756|ref|ZP_07654979.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
gi|307734114|gb|EFO04968.1| Holliday junction resolvase YqgF [Methylobacter tundripaludum SV96]
Length = 151
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
D GTK+IG A+ A P + + I A ++G+
Sbjct: 13 TYLGFDFGTKKIGTAVGQTTTATASPLQTIRSINQNPNWEIIGKLIQEWRPAGLVVGISK 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQKV 136
+GS+ P F ++ + +P DE L+T A+Q+L +++VS K +
Sbjct: 73 QADGSDNPVTPRMLKFCR-QLEGRYQLPVFQQDETLSTFEAKQLLFDEVSVSASKLWEVQ 131
Query: 137 DSIAAALILQEVLDRISFL 155
D +AA LILQ L+ + +
Sbjct: 132 DQLAAQLILQTWLNEHAHI 150
>gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA
331]
gi|215919336|ref|NP_821064.2| hypothetical protein CBU_2094 [Coxiella burnetii RSA 493]
gi|218511772|sp|Q83A17|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase
gi|226725541|sp|A9NBU2|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase
gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
331]
gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
Length = 141
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G KRIG+A+ A+ L + ++ I T + ++G+P NM
Sbjct: 9 LGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWHANVLVVGIPYNM 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GSE + R F + + +P DERLTT+ A++ + ++ KR Q +D+
Sbjct: 69 DGSEQTLTFAARKFAR-KLQMRFGLPVSMVDERLTTIEAKRQWYEQGLT--KRPQHLDNY 125
Query: 140 AAALILQEVL 149
AA LIL++ L
Sbjct: 126 AAKLILEQWL 135
>gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium accolens ATCC 49726]
gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium accolens ATCC 49726]
Length = 183
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A S+ A P + RK + + +L I +
Sbjct: 14 PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIGAYSA 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
I+GLP +++G+ V + + R KV P DERLTTV+A
Sbjct: 74 VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 133
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
L VS KK + +D AA ILQ LD R + L S
Sbjct: 134 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRSD 172
>gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
Length = 147
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
VD +AA++ILQ LD ++ FLE K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146
>gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
Length = 143
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G +R+G+A+ P A P L ++ LL I A ++G+P +
Sbjct: 7 LGFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHT 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--VSRKKRIQKVD 137
+GS AF ++++ +P DERL++ A+ L + VD
Sbjct: 67 DGSASETTLQAVAFAQ-RLEQRGGLPVHQVDERLSSHEARARLQATGRRLRGTTGKALVD 125
Query: 138 SIAAALILQEVLDRISFL 155
AA +IL+ L+ L
Sbjct: 126 QFAAQIILETWLNEQRLL 143
>gi|86142251|ref|ZP_01060761.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
blandensis MED217]
gi|85831003|gb|EAQ49460.1| Holliday junction resolvase-like protein [Leeuwenhoekiella
blandensis MED217]
Length = 134
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D GTKR G+A++D + A + K++ + EN+ ++G
Sbjct: 1 MGRILALDFGTKRTGIAVTDELQLIASGLTTVNTKELLDFL---KKYFAEENVELILLGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN F +++ +P DER T+ A Q ++D + +K+R K
Sbjct: 58 PKRMNNEASHVEAEILKF-RESLEKITSIPIKRVDERFTSKMAAQTMLDSGLKKKQRKNK 116
Query: 136 --VDSIAAALILQEVL 149
+D I+A +ILQ L
Sbjct: 117 ALLDEISATIILQTYL 132
>gi|209694139|ref|YP_002262067.1| Holliday junction resolvase-like protein [Aliivibrio salmonicida
LFI1238]
gi|226725480|sp|B6EMV2|RUVX_ALISL RecName: Full=Putative Holliday junction resolvase
gi|208008090|emb|CAQ78231.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 141
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I + D GTK IG AI A P + T ++ I ++G
Sbjct: 2 SSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVVG 61
Query: 75 LPLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LP +++G E + F + + R DERL+TV A+ L + +
Sbjct: 62 LPTDLHGKELDVITPKAKKFANRLHGRFGNQ-VELHDERLSTVEARADLFEFGGYKALSK 120
Query: 134 QKVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 GNVDCQSAVVILESWFES 138
>gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|226725512|sp|B8DIJ5|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase
gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 142
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID GTKR G+A SD G A PR +V + ELL+ E A+++GLP
Sbjct: 1 MKYLGIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G++ R FV + R+ +P +E L++ A+ L D +S + V
Sbjct: 61 LLHDGTDTLTTRQVRNFVE-RLKRRTTLPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVV 119
Query: 137 DSIAAALILQEVLD 150
D AA ILQ L+
Sbjct: 120 DQQAAVRILQSFLN 133
>gi|325963400|ref|YP_004241306.1| hypothetical protein Asphe3_20170 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469487|gb|ADX73172.1| conserved hypothetical protein TIGR00250 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 199
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII- 73
P +D+GT R+G+AI D A P L R + + +++ + E A +I
Sbjct: 11 PQGIKLGVDVGTVRVGVAICDRDSVLATPYKTLDRNARKNSDIRIIANLVDELGAVQVIV 70
Query: 74 GLPLNMNGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP M G E R + + R + VP DERL++V+A + L + +S
Sbjct: 71 GLPRTMKGEERSSAEMAREYAALLAGELAGRGLAVPVNLVDERLSSVTAHRHLHEAGMSS 130
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + VD +AAA ILQ +D + G
Sbjct: 131 RNHRKVVDQVAAAGILQHAIDMQKARGADVG 161
>gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
Length = 174
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQT 55
M+ + + +D+GT RIG+A+S A P + R+ +
Sbjct: 1 MAPITPDQPGVHDPGPGRRLGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSD 60
Query: 56 ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDE 111
L++ IT N+ I+GLP ++ G+ V + + R +P DE
Sbjct: 61 IDRLITLITDNNVVEVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADE 120
Query: 112 RLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
RL+TV A Q L VS K + +D AA ILQ LD R ++L +
Sbjct: 121 RLSTVVAHQALRASGVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|237755542|ref|ZP_04584161.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692305|gb|EEP61294.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 145
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D+G KRIG+A+SDP A P F++ + ++ I I+ +IGL
Sbjct: 1 MSRILGLDIGLKRIGVAVSDPFGVTATPLEFIL--NDEKVFEKINDLIKNYKISKIVIGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL + G EG + T+ F N+ + + +F DER T+ A++ L +K + +
Sbjct: 59 PLTLKGEEGEQARYTKDFAENLKNHIPQDIEIIFIDERFTSSLAEKTLSQ--TKKKNKKE 116
Query: 135 KVDSIAAALILQEVLDRISFLES 157
K+DS++A ILQ LDR+S
Sbjct: 117 KIDSLSAVFILQTYLDRLSLSNE 139
>gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD]
Length = 137
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I ++DLG+K G AISD R + P K+ +L + I +I
Sbjct: 1 MKRIIALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLI 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G PL+M ++ FV+ +P DER TT A I+I+ +SR+KR
Sbjct: 61 GYPLSMQLNQTKSSKRVDYFVNLF-KTHFDIPIKLVDERQTTKKAHSIMIEQGLSRQKRK 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ D +AA LIL + L++
Sbjct: 120 KNKDKLAAQLILDDYLNQ 137
>gi|296129665|ref|YP_003636915.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
gi|296021480|gb|ADG74716.1| Holliday junction resolvase YqgF [Cellulomonas flavigena DSM 20109]
Length = 190
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENIAAFIIG 74
++D+GT R+G+A SDP A P L R + +G
Sbjct: 19 LAVDVGTVRVGVASSDPDGLLATPVETLARAASKPSSTAADVARIADEARERRAEVVYVG 78
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP +++G+EG RA+ + V DER++TVSA L S ++ +
Sbjct: 79 LPRHLSGAEGSSAGVARAYAVALAHAVRPVQVRLVDERMSTVSAHHALQAAGRSGRRHRE 138
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ LD +E + G
Sbjct: 139 VVDQAAAVVILQHALD----MERTTG 160
>gi|260773599|ref|ZP_05882515.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
69.14]
gi|260612738|gb|EEX37941.1| putative Holliday junction resolvase [Vibrio metschnikovii CIP
69.14]
Length = 141
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + + +P DERL+T A+ L +
Sbjct: 62 PTDLHGKDLDTITPRAKKFAN-RLHGRFGLPVELHDERLSTAEARSELFAHGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
+D +A +IL+ +R
Sbjct: 121 NIDCQSAVVILESWFER 137
>gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
Length = 166
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL-SFITTENIAAF 71
+ +DLG RIGLA+SDP FAHP + A++ + I ++
Sbjct: 1 MTKKSVWLGLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREVSHI 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++G PLN++G+EG R F + + + DER+TTVSA +L+ +
Sbjct: 61 VLGYPLNLDGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQAGM 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
S ++ VD+ +A +ILQ LD
Sbjct: 121 SSRQHRAVVDTQSAVVILQSALDS 144
>gi|258620730|ref|ZP_05715765.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573]
gi|258625614|ref|ZP_05720496.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603]
gi|262403908|ref|ZP_06080465.1| putative Holliday junction resolvase [Vibrio sp. RC586]
gi|258582116|gb|EEW06983.1| Holliday junction resolvase-like protein [Vibrio mimicus VM603]
gi|258586928|gb|EEW11642.1| Holliday junction resolvase-like protein [Vibrio mimicus VM573]
gi|262349870|gb|EEY99006.1| putative Holliday junction resolvase [Vibrio sp. RC586]
Length = 140
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFAQ-RLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|259507361|ref|ZP_05750261.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
gi|259165072|gb|EEW49626.1| Holliday junction resolvase [Corynebacterium efficiens YS-314]
Length = 188
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68
+D+GT RIG+A SD R A P + R+ + L+ IT +
Sbjct: 20 PGPGRRIGLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDA 79
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILID 124
++GLP ++ G+ V R + R +P DERLTTV A Q L
Sbjct: 80 VEVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRA 139
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
++ + + +D AA ILQ LD
Sbjct: 140 SGINERDGRKVIDQAAAVEILQTWLD 165
>gi|325284992|ref|YP_004260782.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
gi|324320446|gb|ADY27911.1| Holliday junction resolvase [Cellulophaga lytica DSM 7489]
Length = 136
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G R G+A++D + A + K++ + +I E + I+G
Sbjct: 1 MGRLLAIDFGKVRTGIAVTDELQIIASGLTTVATKELITFLKD---YIAKEKVDKIIVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P MN + F+ + + DER T+ A + +ID +++KKR K
Sbjct: 58 PKQMNNTASESEVLIVPFLEKLTAVFPNMIIEREDERFTSKMAFKTMIDSGLNKKKRKNK 117
Query: 136 --VDSIAAALILQEVLDR 151
VD I+A +ILQ L R
Sbjct: 118 ALVDEISATIILQSYLSR 135
>gi|32130034|sp|Q8FT24|RUVX_COREF RecName: Full=Putative Holliday junction resolvase
Length = 181
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-----TALELLSFITTENI 68
+D+GT RIG+A SD R A P + R+ + L+ IT +
Sbjct: 13 PGPGRRIGLDVGTVRIGVAASDRDARLAMPVETVPRETGMKGPDRGDIDRLIDIITEYDA 72
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILID 124
++GLP ++ G+ V R + R +P DERLTTV A Q L
Sbjct: 73 VEVVVGLPRDLQGNGSASVKQAREIAFRIRRRLTATGREIPVRLGDERLTTVVATQALRA 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLD 150
++ + + +D AA ILQ LD
Sbjct: 133 SGINERDGRKVIDQAAAVEILQTWLD 158
>gi|28899387|ref|NP_798992.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus
RIMD 2210633]
gi|153839187|ref|ZP_01991854.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|32130015|sp|Q87LJ9|RUVX_VIBPA RecName: Full=Putative Holliday junction resolvase
gi|28807623|dbj|BAC60876.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149747289|gb|EDM58273.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|328474083|gb|EGF44888.1| Holliday junction resolvase-like protein [Vibrio parahaemolyticus
10329]
Length = 141
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLETITPRAKKFAK-RLQGRYGLPVELHDERLSTSEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 121 NIDCQSAVVILESWFEAL 138
>gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM
4136]
Length = 151
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID GT RIGLA+SD AHP L + E+ + + + ++GLP
Sbjct: 1 MRTLGIDHGTVRIGLALSDELGLAAHPLKTLDTSPSVEQ--EIAEIVRQKRVTTVVLGLP 58
Query: 77 LNMNGSEGPRVHSTRAFV-HNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQ 134
L M+G G AF + V F DERLT+V+A++ L ++ K++ +
Sbjct: 59 LRMDGHRGEAATRVEAFADRLSKALRHEVTVKFVDERLTSVAAERSLGLEGKQKTKEQKK 118
Query: 135 KVDSIAAALILQEVLD 150
VD +AA ILQ+ L+
Sbjct: 119 LVDQVAAVAILQDYLN 134
>gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
Length = 156
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 57/131 (43%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+GT R+G+A +DP + P L R EL + + + ++GLP ++
Sbjct: 3 IGVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPRHL 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EG R + + V DERL++ A Q L V +D +
Sbjct: 63 KGGEGVSAKGARRYARRVKVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGVIDQV 122
Query: 140 AAALILQEVLD 150
AA +I++ LD
Sbjct: 123 AAQIIIEHALD 133
>gi|167841114|ref|ZP_02467798.1| Holliday junction resolvase-like protein [Burkholderia
thailandensis MSMB43]
Length = 146
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+L + + + D G KRIG+AI + R A + + I A
Sbjct: 3 AALSRDATLLAFDYGEKRIGVAIGNLLTRTARALVIVPNLNREHRFKAVGELIAEWKPDA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++GLPL+ +G+ + F + ++ + +P + DER ++V A+ L +
Sbjct: 63 LVVGLPLHPDGAPHEMTQRAKRFGN-QLNGRFNLPVSWVDERYSSVEARAGLRARGAAA- 120
Query: 131 KRIQKVDSIAAALILQEVLDRISFLES 157
+VD+ AA +ILQ+ LD +
Sbjct: 121 ---DRVDAEAARVILQQYLDGLPDHHE 144
>gi|227503537|ref|ZP_03933586.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium accolens ATCC 49725]
gi|227075573|gb|EEI13536.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium accolens ATCC 49725]
Length = 173
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
++D+GT RIG+A S+ A P + RK + + +L I
Sbjct: 4 PGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDRILELIAAYTA 63
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR--------KVYVPFVFWDERLTTVSAQQ 120
I+GLP +++G+ V + + R KV P DERLTTV+A
Sbjct: 64 VEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLADERLTTVAATT 123
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
L VS KK + +D AA ILQ LD R + L S
Sbjct: 124 ALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANALRSD 162
>gi|198284748|ref|YP_002221069.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665123|ref|YP_002427428.1| hypothetical protein AFE_3061 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198249269|gb|ACH84862.1| Holliday junction resolvase YqgF [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517336|gb|ACK77922.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 143
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ P+ ID G +RIG+A+ L + + A ++G
Sbjct: 4 RSGPLLGIDFGERRIGIAVLGESGLAPQGVATLRNGECGPDWDGFARILKEWQPRALVLG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL+M+GSEG V R F + R+ +P + DERL++ +A +L + +S KKR +
Sbjct: 64 LPLHMDGSEGFMVGRVRKFAE-SLQRRFPLPIHWVDERLSSHAADLVLKERELSHKKRGR 122
Query: 135 KVDSIAAALIL 145
+D AA IL
Sbjct: 123 LLDQAAACEIL 133
>gi|120556668|ref|YP_961019.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
gi|167012734|sp|A1U763|RUVX_MARAV RecName: Full=Putative Holliday junction resolvase
gi|120326517|gb|ABM20832.1| Holliday junction resolvase YqgF [Marinobacter aquaeolei VT8]
Length = 143
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
N+ + + D GT+RIG+A P L + ++ + + ++
Sbjct: 4 PGNRRLLAFDFGTRRIGVASGQEMLGTGQPLAMLPARDGIPDWQQIEALLADWQPDIVLV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+ +E R F + R V DERLT+ A+ ++ SR
Sbjct: 64 GLPLNMDDTENEMCARARKFGKRLHGRYH-VTVEMVDERLTSYEAKGEVMAGGGSRDFGR 122
Query: 134 QKVDSIAAALILQEV 148
VD AA LIL+
Sbjct: 123 HGVDDRAAVLILETW 137
>gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
Length = 174
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQT 55
M+ + + +D+GT RIG+A+S A P + R+ +
Sbjct: 1 MAPITPDQPGVHDPGPGRRLGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSD 60
Query: 56 ALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY----VPFVFWDE 111
L++ IT ++ I+GLP ++ G+ V + + R +P DE
Sbjct: 61 IDRLITLITDNDVVEVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADE 120
Query: 112 RLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESS 158
RL+TV A Q L VS K + +D AA ILQ LD R ++L +
Sbjct: 121 RLSTVVAHQALRASGVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
Length = 147
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
VD +AA++ILQ LD ++ FLE K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146
>gi|255994297|ref|ZP_05427432.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
49989]
gi|255993010|gb|EEU03099.1| putative Holliday junction resolvase [Eubacterium saphenum ATCC
49989]
Length = 148
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G IG+A SD A + R+ + + +++ + ++ + +IG+P
Sbjct: 1 MRVLALDVGEATIGVARSDALGITAQGLLSIFRESIKKDTTKIIDILREDDYSEIVIGMP 60
Query: 77 LNMNGS-EGPRVHSTRAFVHNMIDR-----KVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
LN G + + T F + ++ + F+DER TT A+ +LI + K
Sbjct: 61 LNTYGEAKNEQSIFTEKFADKLQNKLRSSGMSNIKVEFYDERFTTKMARDVLIQGGIKGK 120
Query: 131 KRIQKVDSIAAALILQEVLDRISFLESS 158
K+ +D AA ++LQ LD+ S+ +
Sbjct: 121 KQKDVIDKQAAVILLQSYLDKKSYRDER 148
>gi|27364899|ref|NP_760427.1| Holliday junction resolvase-like protein [Vibrio vulnificus CMCP6]
gi|320155282|ref|YP_004187661.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O]
gi|32130025|sp|Q8DCB1|RUVX_VIBVU RecName: Full=Putative Holliday junction resolvase
gi|27361044|gb|AAO09954.1| Putative Holliday junction resolvase [Vibrio vulnificus CMCP6]
gi|319930594|gb|ADV85458.1| putative Holliday junction resolvase [Vibrio vulnificus MO6-24/O]
Length = 140
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFAQ-RLQGRFGLPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFE 136
>gi|119962349|ref|YP_948020.1| hypothetical protein AAur_2280 [Arthrobacter aurescens TC1]
gi|119949208|gb|ABM08119.1| putative Uncharacterised protein family (UPF0081) [Arthrobacter
aurescens TC1]
Length = 196
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII- 73
P+ +D+GT R+GLA+ DP A P + R + + +L + A I
Sbjct: 11 PHGIKLGVDVGTVRVGLAVCDPDGILATPLKTIGRDSKKNSDVRVLVKHAADLPAVQIFV 70
Query: 74 GLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP M G E + ++ + VP DERL+TV+A + L +S
Sbjct: 71 GLPRTMKGEERASAQMAMDYADLLVSELLRVGLDVPVNLVDERLSTVTAHRNLHQAGMSS 130
Query: 130 KKRIQKVDSIAAALILQEVLD 150
K + VD +AAA ILQ +D
Sbjct: 131 KNHRKVVDQVAAAGILQHAID 151
>gi|269956482|ref|YP_003326271.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
15894]
gi|269305163|gb|ACZ30713.1| Holliday junction resolvase YqgF [Xylanimonas cellulosilytica DSM
15894]
Length = 184
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENIA 69
P +D+G RIGLA SDP A P + R + + + A
Sbjct: 27 PRGARLGVDVGKARIGLAASDPDGLIATPVETVARVLDATGTDSADVRAIAEAVGERFAA 86
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
+GLP +++G EG RAF + VP DER++TV+A L
Sbjct: 87 VVYVGLPRHLSGKEGAATADARAFATRLALAVAPVPVRMVDERMSTVTATSQLRAAGKKS 146
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
K +D AA +ILQ LD + G
Sbjct: 147 KSHRPVIDQAAAVIILQSALDAERAAGTRAG 177
>gi|256027954|ref|ZP_05441788.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
D11]
gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
Length = 147
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++A + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVAKSDIMGIIASPLETINRKKV-KSAKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIKKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD--RISFLESSK 159
VD +AA++ILQ LD ++ FLE K
Sbjct: 120 VVDKVAASIILQTYLDMKKLKFLEEGK 146
>gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
Length = 168
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVT-QTALELLSFITTENIAAFI 72
P + ++D G KRIGLA+SD A P + R+ E++ ++ +I
Sbjct: 3 TPVGRLLAVDWGDKRIGLAVSDELGMLASPAGVIARRAGKRPPIAEIMRQAEALGVSGYI 62
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
GLPL+ G E R R + + +P DER TT +A + + + S + R
Sbjct: 63 FGLPLDPGGDETDRSREVREVAG-KLATRQPLPVRLVDERFTTSAALRSIREQGGSTRGR 121
Query: 133 IQKVDSIAAALILQEVL 149
VD++AA ++L+ VL
Sbjct: 122 KGDVDALAACVLLEGVL 138
>gi|261337333|ref|ZP_05965217.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
20093]
gi|270277707|gb|EFA23561.1| putative Holliday junction resolvase [Bifidobacterium gallicum DSM
20093]
Length = 156
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG RIG A+SDP FAHP VR E+L+ I E + ++GLPL
Sbjct: 3 WLGLDLGNARIGTALSDPQLTFAHPAGNITVRGNYGVEFDEVLAIIEDEQVDHVVVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDM 125
++G+EG R +V +I R DERLTTV A + L D
Sbjct: 63 QLDGTEGASARKARTWVRELIHRLVQEVADPRSGITTMPSVTLCDERLTTVDAHRRLHDA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
V + VD +A ILQ LD+
Sbjct: 123 QVQGRNHRAMVDQQSAVEILQSALDQ 148
>gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|146325569|sp|Q316N1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase
gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 144
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID GT+R G+A++D A PR +V ELLS + E A ++GLP
Sbjct: 1 MKYLGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L G E R FV + R+ +P E L++ A + L + +S ++R V
Sbjct: 61 LLAGGEETLITRQVRNFVA-RLRRRSSLPVYLVAEELSSFEAGEDLREAGLSFREREAVV 119
Query: 137 DSIAAALILQEVLD 150
D AA IL+ L+
Sbjct: 120 DQQAAVRILESFLN 133
>gi|308094702|ref|ZP_05891280.2| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308095554|ref|ZP_05906770.2| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
gi|308126024|ref|ZP_05778717.2| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|308126682|ref|ZP_05911773.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308085842|gb|EFO35537.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
gi|308090447|gb|EFO40142.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308107473|gb|EFO45013.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308113524|gb|EFO51064.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 145
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 6 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 65
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + +P DERL+T A+ L M +
Sbjct: 66 PTDLHGKDLETITPRAKKFAK-RLQGRYGLPVELHDERLSTSEARAELFSMGGYKALSKG 124
Query: 135 KVDSIAAALILQEVLDRI 152
+D +A +IL+ + +
Sbjct: 125 NIDCQSAVVILESWFEAL 142
>gi|220912768|ref|YP_002488077.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
gi|219859646|gb|ACL39988.1| Holliday junction resolvase YqgF [Arthrobacter chlorophenolicus A6]
Length = 207
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII- 73
P +D+GT R+G+AI D A P L R + + L++ + E A +I
Sbjct: 20 PQGVKLGVDVGTVRVGVAICDRDSILATPYKTLDRNTKKNSDVRLIAKLAEELGAVQVIV 79
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YVPFVFWDERLTTVSAQQILIDMNVSR 129
G+P M G E + + VP DERL++VSA + L + +S
Sbjct: 80 GMPRTMKGEEHASARMASDYAGLLAAELAARGLDVPVNMVDERLSSVSAHRNLHEAGMSS 139
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ + VD +AAA ILQ +D + G
Sbjct: 140 RNHRKVVDQVAAAGILQHAIDMQKARGADVG 170
>gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM
43017]
gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis
DSM 43017]
Length = 154
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFI 72
++D+G+ R+G+A+SDP A P L R + EL + ++ I
Sbjct: 4 PGPGRRLAVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVEVI 63
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP + G + + +R V DERL+TVSA ++L V +K+
Sbjct: 64 VGLPRTLADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGRKQ 123
Query: 133 IQKVDSIAAALILQEVLD 150
VD AA LQ LD
Sbjct: 124 RAVVDQAAAVEFLQAWLD 141
>gi|257462580|ref|ZP_05626990.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
D12]
gi|317060232|ref|ZP_07924717.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D12]
gi|313685908|gb|EFS22743.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D12]
Length = 139
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SDP A P + R+K + ++ EN + ++G+P
Sbjct: 3 KKYLALDVGDVRIGVAKSDPLGMLAIPLETIDRRK-EKPVKRIMQLCEEENTKSIVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++GSE + R F+H + V + DER TTV+A +IL +MN ++ +
Sbjct: 62 KSLDGSEKRQAEKVRIFIHALKSAIPGVEILEVDERFTTVTADRILTEMNRKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD +AA+LILQ+ L+
Sbjct: 122 VDKVAASLILQQYLN 136
>gi|241662185|ref|YP_002980545.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12D]
gi|240864212|gb|ACS61873.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12D]
Length = 143
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + + D G KRIG+A+ + R A + + V ++ + F+
Sbjct: 12 MPADGTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P++ +G E P + + F + + + +P + DER ++++AQ D S
Sbjct: 72 VGMPVHPDGEEQPMIKLAKRFGN-QLHGRYGLPVTWVDERYSSIAAQ----DAGAS---- 122
Query: 133 IQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 DDVLDAEAARIILQQFFDE 141
>gi|189439478|ref|YP_001954559.1| putative endonuclease for recombination [Bifidobacterium longum
DJO10A]
gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp.
longum BBMN68]
gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
gi|32130036|sp|Q8G5X0|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase
gi|226725490|sp|B3DSE2|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase
gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum
DJO10A]
gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum
subsp. longum BBMN68]
gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
Length = 152
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG R+GLA+SDP FAHP V E+L+ I E++ I+GLPL
Sbjct: 3 WLGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDM 125
M+G+EG R + N+ R DERLTTVSA + L +
Sbjct: 63 QMDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + K VD +A +ILQ LDR
Sbjct: 123 HKASNKHRPVVDQQSAVVILQTALDRTRE 151
>gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|254767498|sp|B7GSA0|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase
gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 151
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG R+GLA+SDP FAHP V E+L+ I E++ I+GLPL
Sbjct: 3 WLGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDM 125
M+G+EG R + N+ R DERLTTVSA + L +
Sbjct: 63 QMDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + K VD +A +ILQ LDR
Sbjct: 123 HKASNKHRPVVDQQSAVVILQTALDRTRE 151
>gi|297580605|ref|ZP_06942531.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297535021|gb|EFH73856.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 140
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIAKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLDTITPRAKKFAQ-RLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|254515815|ref|ZP_05127875.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR5-3]
gi|219675537|gb|EED31903.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR5-3]
Length = 142
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D G +IG+A+ + P L + E+ ++G PL
Sbjct: 9 RVLAFDYGLSQIGVAVGNSDLGTTQPLSILRARDGQPNWAEVTELCQEWQPDLLLVGDPL 68
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+ R F ++ ++ + DERL++ +Q + R VD
Sbjct: 69 NMDGTVSEFAQRARKFAR-RLEGRLGLSVEMVDERLSSFEVKQQQKEAGHRGDYREHPVD 127
Query: 138 SIAAALILQEVL 149
+AA LIL++ L
Sbjct: 128 DLAAELILRDWL 139
>gi|317050665|ref|YP_004111781.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
gi|316945749|gb|ADU65225.1| Holliday junction resolvase YqgF [Desulfurispirillum indicum S5]
Length = 152
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D+G++R+G+A+SD RR A L R+ Q + +I + ++G+
Sbjct: 1 MGRILALDIGSRRVGVAVSDSQRRMASTLKTLERQDYQQMLHRIGKYIEEYGVDLLVVGI 60
Query: 76 P-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
P + +GS P+ A + +R VP + DER +T + LI ++SRKKR
Sbjct: 61 PLDSRDGSFTPKAMEIGAEARQLQERFA-VPVIGVDERFSTSKSNDFLIGVADLSRKKRK 119
Query: 134 QKVDSIAAALILQEVLD 150
+ VD++AA ILQ LD
Sbjct: 120 KVVDTMAAQNILQGYLD 136
>gi|15640493|ref|NP_230120.1| Holliday junction resolvase-like protein [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121590718|ref|ZP_01678050.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121728570|ref|ZP_01681591.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147674125|ref|YP_001215992.1| Holliday junction resolvase-like protein [Vibrio cholerae O395]
gi|153216267|ref|ZP_01950360.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153802592|ref|ZP_01957178.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153819170|ref|ZP_01971837.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153823173|ref|ZP_01975840.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153826577|ref|ZP_01979244.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|153828418|ref|ZP_01981085.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080676|ref|YP_002809227.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2]
gi|229507104|ref|ZP_04396610.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286]
gi|229509060|ref|ZP_04398548.1| hypothetical protein VCE_000463 [Vibrio cholerae B33]
gi|229512528|ref|ZP_04401999.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21]
gi|229519728|ref|ZP_04409171.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9]
gi|229525157|ref|ZP_04414562.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis
VL426]
gi|229530308|ref|ZP_04419696.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)]
gi|229606241|ref|YP_002876889.1| Holliday junction resolvase-like protein [Vibrio cholerae MJ-1236]
gi|254291177|ref|ZP_04961973.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|254850697|ref|ZP_05240047.1| holliday junction resolvase-like protein [Vibrio cholerae MO10]
gi|255744287|ref|ZP_05418240.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101]
gi|261210043|ref|ZP_05924341.1| putative Holliday junction resolvase [Vibrio sp. RC341]
gi|262147288|ref|ZP_06028087.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1]
gi|262164082|ref|ZP_06031821.1| putative Holliday junction resolvase [Vibrio mimicus VM223]
gi|262167140|ref|ZP_06034854.1| putative Holliday junction resolvase [Vibrio cholerae RC27]
gi|262172420|ref|ZP_06040098.1| putative Holliday junction resolvase [Vibrio mimicus MB-451]
gi|262191077|ref|ZP_06049284.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93]
gi|298501003|ref|ZP_07010804.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|32130070|sp|Q9KUP9|RUVX_VIBCH RecName: Full=Putative Holliday junction resolvase
gi|172047745|sp|A5F9G8|RUVX_VIBC3 RecName: Full=Putative Holliday junction resolvase
gi|254767532|sp|C3LRY3|RUVX_VIBCM RecName: Full=Putative Holliday junction resolvase
gi|9654892|gb|AAF93639.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547449|gb|EAX57558.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121629126|gb|EAX61569.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114356|gb|EAY33176.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124121855|gb|EAY40598.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|126510315|gb|EAZ72909.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519299|gb|EAZ76522.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|146316008|gb|ABQ20547.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|148876127|gb|EDL74262.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|149739669|gb|EDM53883.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|150422871|gb|EDN14822.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008564|gb|ACP04776.1| Putative Holliday junction resolvase [Vibrio cholerae M66-2]
gi|227012319|gb|ACP08529.1| Putative Holliday junction resolvase [Vibrio cholerae O395]
gi|229332081|gb|EEN97569.1| hypothetical protein VCG_003428 [Vibrio cholerae 12129(1)]
gi|229338738|gb|EEO03755.1| hypothetical protein VCA_002768 [Vibrio cholerae bv. albensis
VL426]
gi|229344417|gb|EEO09392.1| hypothetical protein VCC_003760 [Vibrio cholerae RC9]
gi|229350421|gb|EEO15370.1| hypothetical protein VCB_000168 [Vibrio cholerae TMA 21]
gi|229353985|gb|EEO18919.1| hypothetical protein VCE_000463 [Vibrio cholerae B33]
gi|229355849|gb|EEO20769.1| hypothetical protein VCF_002326 [Vibrio cholerae BX 330286]
gi|229368896|gb|ACQ59319.1| hypothetical protein VCD_001140 [Vibrio cholerae MJ-1236]
gi|254846402|gb|EET24816.1| holliday junction resolvase-like protein [Vibrio cholerae MO10]
gi|255738227|gb|EET93619.1| putative Holliday junction resolvase [Vibrio cholera CIRS 101]
gi|260840808|gb|EEX67350.1| putative Holliday junction resolvase [Vibrio sp. RC341]
gi|261893496|gb|EEY39482.1| putative Holliday junction resolvase [Vibrio mimicus MB-451]
gi|262024440|gb|EEY43127.1| putative Holliday junction resolvase [Vibrio cholerae RC27]
gi|262027610|gb|EEY46276.1| putative Holliday junction resolvase [Vibrio mimicus VM223]
gi|262031282|gb|EEY49897.1| putative Holliday junction resolvase [Vibrio cholerae INDRE 91/1]
gi|262033053|gb|EEY51584.1| putative Holliday junction resolvase [Vibrio cholerae CT 5369-93]
gi|297540251|gb|EFH76311.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|327483319|gb|AEA77726.1| Putative Holliday junction resolvase [Vibrio cholerae LMA3894-4]
Length = 140
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLDTITPRAKKFAQ-RLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|253998341|ref|YP_003050404.1| Holliday junction resolvase-like protein [Methylovorus sp. SIP3-4]
gi|253985020|gb|ACT49877.1| Holliday junction resolvase YqgF [Methylovorus sp. SIP3-4]
Length = 172
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + D G KRIG+A+ + AHP + + + + I I
Sbjct: 21 LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAISALINEWRPTVLI 80
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPL+++G E R F +D + +P V DERL++ A L + V +K+
Sbjct: 81 VGLPLSLDGEEHATSLLCRKFAR-RLDGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+D +AA ILQ D +S L
Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162
>gi|148272983|ref|YP_001222544.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|167012711|sp|A5CRZ4|RUVX_CLAM3 RecName: Full=Putative Holliday junction resolvase
gi|147830913|emb|CAN01857.1| putative Hollyday junction resolvase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 161
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
++D+G RIGLA SDP A P + R + +L+ T + A ++GLPL
Sbjct: 7 LAVDVGKARIGLARSDPHGLIATPVETVPRDPAGSADVRRILAVATEIDCAELVVGLPLA 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G F + +P DERL+TVSAQ L +K+ +D
Sbjct: 67 LSGRATASTDDAEGFAR-RLADATEIPVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125
Query: 139 IAAALILQEVLD 150
+AA +ILQ L+
Sbjct: 126 VAAVIILQHALE 137
>gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
Length = 149
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+G RIG+A+ DP A P + LL + + ++GLPL+++G
Sbjct: 2 DVGDVRIGVAMCDPDGMIATPVETVPA--GPAAHARLLQIASEIEVVEIVVGLPLSLSGR 59
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
EGP RAFV ++ P DERL+TV+A L D + + + +D AA
Sbjct: 60 EGPAAGKVRAFVQ-VLAAMSDRPVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQAAAV 118
Query: 143 LILQEVLDRISFLESSKG 160
+ILQ LD E ++G
Sbjct: 119 VILQNALDA----ERTRG 132
>gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
Length = 153
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID+G R+G+A SDP A P + R + +L ++GLP
Sbjct: 4 GTRLGIDVGKVRVGVARSDPHGMIATPVETVQRASSS--IKRILLLAVEFEAVELVVGLP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ ++G + P RAF + + DER+TT+SAQ L + K V
Sbjct: 62 IALSGRDTPSTADARAFAQ-ELADGSDITVRLVDERMTTMSAQSALRASGRTTKNSRSVV 120
Query: 137 DSIAAALILQEVLD 150
D +AA +ILQ LD
Sbjct: 121 DQVAAVIILQHALD 134
>gi|189502649|ref|YP_001958366.1| Holliday junction resolvase-like protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|226725481|sp|B3ETT5|RUVX_AMOA5 RecName: Full=Putative Holliday junction resolvase
gi|189498090|gb|ACE06637.1| hypothetical protein Aasi_1327 [Candidatus Amoebophilus asiaticus
5a2]
Length = 141
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR+GL+++DP + A P + +++ EN+ AF++G
Sbjct: 1 MGRIMAIDYGLKRVGLSVTDPLQIIASPLTTVAANDTLTFL---QTYVKKENVEAFVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P ++ P + + F+ + DER T+ A L++ +K R
Sbjct: 58 PTDIKDKNTPIIVAISQFIELLQRNFPDQQIFQHDERYTSKLAAASLVEGGFKKKDRRNK 117
Query: 134 QKVDSIAAALILQEVL 149
+ +D ++A +ILQ L
Sbjct: 118 ENLDKLSATIILQSFL 133
>gi|323498675|ref|ZP_08103666.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
21326]
gi|323316275|gb|EGA69295.1| Holliday junction resolvase-like protein [Vibrio sinaloensis DSM
21326]
Length = 140
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I S D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMSFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKLIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + + +P DERL+T A+ L +M +
Sbjct: 62 PTDLHGRDLETITPRAKKFAN-RLHGRFGLPVELHDERLSTTEARAELFNMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|313200415|ref|YP_004039073.1| holliday junction resolvase yqgf [Methylovorus sp. MP688]
gi|312439731|gb|ADQ83837.1| Holliday junction resolvase YqgF [Methylovorus sp. MP688]
Length = 172
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + D G KRIG+A+ + AHP + + + + I I
Sbjct: 21 LTSEGTALAFDFGEKRIGVAVGEHLLGIAHPLTTIESEANDVRFAAITALINEWRPTVLI 80
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPL+++G E R F +D + +P V DERL++ A L + V +K+
Sbjct: 81 VGLPLSLDGEEHATSLLCRKFAR-RLDGRFGLPVVMIDERLSSAEASSSLNETGVYGRKQ 139
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
+D +AA ILQ D +S L
Sbjct: 140 KVMLDQVAAQHILQSYFDTLSSL 162
>gi|229519852|ref|ZP_04409286.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80]
gi|229343140|gb|EEO08124.1| hypothetical protein VIF_000366 [Vibrio cholerae TM 11079-80]
Length = 140
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + + D GTK IG AI A P E+ I I+GL
Sbjct: 2 SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKDLDTITPRAKKFAQ-RLHGRFGLPVELHDERLSTTEARAELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLDR 151
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFES 137
>gi|296394105|ref|YP_003658989.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
gi|296181252|gb|ADG98158.1| Holliday junction resolvase YqgF [Segniliparus rotundus DSM 44985]
Length = 200
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-------ALELLSFITTENI 68
P IDLG RIGLAISDP FA P L R L + I
Sbjct: 41 RGPRLGIDLGQARIGLAISDPDAVFAAPFAALERATGKPPKLALAEDLAALAEVVREHRI 100
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A ++G P N+ G + FV + + VP DER+TT+ A + L + VS
Sbjct: 101 ALVVVGWPRNLKGEAATAARTAEEFVRRLGEVIAPVPVRLVDERVTTLLAHRQLREAGVS 160
Query: 129 RKK-----RIQKVDSIAAALILQEVLD 150
K+ + VD +AA ILQ LD
Sbjct: 161 GKRLVRKGQRGVVDQLAATAILQGWLD 187
>gi|50954762|ref|YP_062050.1| hypothetical protein Lxx10920 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|62900966|sp|Q6AFA0|RUVX_LEIXX RecName: Full=Putative Holliday junction resolvase
gi|50951244|gb|AAT88945.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 155
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID+GT RIG++ SD A P + R + +T + I+GLPL +
Sbjct: 7 LGIDVGTVRIGVSCSDLHGTLATPYETVARSGDAADRRRIAEIVTDLGVVEIIVGLPLAL 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G AF + +V P DERL+TVSA L + K VD
Sbjct: 67 SGVHTASTADAVAFAE-ALVVEVGAPVRLVDERLSTVSAHSALRSSGKNAKSSRPVVDQA 125
Query: 140 AAALILQEVLDRISFLESSKG 160
AA +ILQ LD G
Sbjct: 126 AATIILQHALDAERATSRPPG 146
>gi|300115248|ref|YP_003761823.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
gi|299541185|gb|ADJ29502.1| Holliday junction resolvase YqgF [Nitrosococcus watsonii C-113]
Length = 152
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 14 KPNQPI-ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
I D G + IG+A+ A+P L + ++ I N I
Sbjct: 10 PSKPRIALGFDFGLRYIGVAVGQEITHSANPLTTLKAHEGNPDWNQITQLIRQWNPDLLI 69
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+ SE + R F + + + + DERL+TV A++ L ++ S R
Sbjct: 70 VGLPLNMDQSEQFLTKAARRFGR-RLHGRYGLTIEWIDERLSTVEARERL-NIKSSASGR 127
Query: 133 IQKVDSIAAALILQEVL 149
Q +D +AA ILQ L
Sbjct: 128 RQGIDQMAAQCILQTWL 144
>gi|289425322|ref|ZP_06427099.1| RNAse YqgF [Propionibacterium acnes SK187]
gi|289428538|ref|ZP_06430222.1| RNAse YqgF [Propionibacterium acnes J165]
gi|295130737|ref|YP_003581400.1| RNAse YqgF [Propionibacterium acnes SK137]
gi|289154300|gb|EFD02988.1| RNAse YqgF [Propionibacterium acnes SK187]
gi|289158232|gb|EFD06451.1| RNAse YqgF [Propionibacterium acnes J165]
gi|291376276|gb|ADE00131.1| RNAse YqgF [Propionibacterium acnes SK137]
gi|332675582|gb|AEE72398.1| putative Holliday junction resolvase [Propionibacterium acnes 266]
Length = 160
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVHTAD--RPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151
>gi|50842659|ref|YP_055886.1| endonuclease [Propionibacterium acnes KPA171202]
gi|62900965|sp|Q6A8I7|RUVX_PROAC RecName: Full=Putative Holliday junction resolvase
gi|50840261|gb|AAT82928.1| predicted endonuclease involved in recombination [Propionibacterium
acnes KPA171202]
Length = 160
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVHTAD--RPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151
>gi|261366579|ref|ZP_05979462.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
15176]
gi|282571398|gb|EFB76933.1| putative Holliday junction resolvase [Subdoligranulum variabile DSM
15176]
Length = 156
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAAFIIGL 75
++D G R GLA D P + +K + A + + GL
Sbjct: 1 MKWLAVDYGDARTGLAGCDASETITSPITPQIEEKSMNKVAAAVTQVAVQRGAEGIVCGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P NM+G+EG R +R F + P V WDER TTVSA IL D + +KR +
Sbjct: 61 PKNMDGTEGSRAAKSRRFAQ-RLANTAGRPVVLWDERRTTVSATAILADNDTFGQKRKAR 119
Query: 136 VDSIAAALILQEVLDRISF 154
+DS++AA+IL+ L+ +
Sbjct: 120 LDSVSAAVILESFLNWRAH 138
>gi|312797107|ref|YP_004030029.1| hypothetical protein RBRH_01480 [Burkholderia rhizoxinica HKI 454]
gi|312168882|emb|CBW75885.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
Length = 146
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D G KRIG+AI + R A + + + I ++GLP+
Sbjct: 7 TLLAFDYGHKRIGVAIGNTLTRCARALTTVENRNREYRFAAVGELIGQWQPLRLVVGLPV 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ R F + ++ + +P + DER ++V+A+ VD
Sbjct: 67 HPDGAPHEMTRQARRFGN-QLNGRFNLPVTWVDERYSSVAAEAAGARG--------AVVD 117
Query: 138 SIAAALILQEVLDRISFLESS 158
+ AA +ILQ+ D S+ +
Sbjct: 118 AQAACIILQQYFDEQSYPRAD 138
>gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
Length = 140
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID G KR+GLA+SD + P + R LELL+ I I A ++GLP
Sbjct: 1 MKYLGIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G + F+ +DR+ +P +E T++ A+ IL + +K+ + +
Sbjct: 61 LGPDGEKSLTCRQAENFMQ-SLDRRTDLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESL 119
Query: 137 DSIAAALILQEVL 149
D AA +IL+ L
Sbjct: 120 DQAAAVIILESFL 132
>gi|37681055|ref|NP_935664.1| Holliday junction resolvase-like protein [Vibrio vulnificus YJ016]
gi|62901000|sp|Q7MHJ8|RUVX_VIBVY RecName: Full=Putative Holliday junction resolvase
gi|37199805|dbj|BAC95635.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus
YJ016]
Length = 140
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + +P DERL+T A+ L M +
Sbjct: 62 PTDLHGKALETITPRAKKFAQ-RLQGRFALPVELHDERLSTTEARSELFSMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVIILESWFE 136
>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 136
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I SID GTKR GLA++DP + A + Q L + E + AF+IGLP
Sbjct: 1 MRILSIDYGTKRTGLAVTDPLKLIASGLTTV---DTPQLLPFLEKYTAEEAVEAFVIGLP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQ 134
+N + + + + +R + +DER T+ A Q +ID + +K+R
Sbjct: 58 KRLNNEDSAVEADIQQLLTKLKERFPTIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKA 117
Query: 135 KVDSIAAALILQEVLD 150
+D I+A LILQ+ L+
Sbjct: 118 LIDEISATLILQDFLN 133
>gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213]
gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213]
Length = 150
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG R+GLA+SDP FAHP V E+L+ + E++ I+GLPL
Sbjct: 3 WLGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFV----------HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
M+G+EG R + V DERLTTVSA + L +
Sbjct: 63 QMDGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQK 122
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ K VD +A +ILQ LDR
Sbjct: 123 ASTKHRPMVDQQSAVVILQTALDR 146
>gi|328955591|ref|YP_004372924.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
gi|328455915|gb|AEB07109.1| Holliday junction resolvase YqgF [Coriobacterium glomerans PW2]
Length = 140
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID+G R G+A+SD R A P L +V A + + G PL +
Sbjct: 4 LAIDIGEVRCGIAVSDATGRVALPVKVLPAIEVVSLARSFRDVLAEYEPEMLVCGSPLTL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G GP+ RA I +P F DER+++ A++IL + + ++ K+D I
Sbjct: 64 AGELGPQAERIRAEAE-AIGSAADLPVAFVDERMSSREAKRILRERGCTEREMRGKLDMI 122
Query: 140 AAALILQEVLDRIS 153
AA+L LQ LDR +
Sbjct: 123 AASLFLQTWLDRRN 136
>gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|62900991|sp|Q726N6|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase
gi|167012717|sp|A1VA64|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase
gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1]
Length = 142
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID G +R G+A++D G R A PR + +ELL + E AF++GLP
Sbjct: 1 MKFLGIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
G E R FV + R+ +P F E L++ A+ L D + ++ V
Sbjct: 61 RLPGGEETLTTRQVRNFVE-RLKRRTTLPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVV 119
Query: 137 DSIAAALILQEVL 149
D AA IL+ L
Sbjct: 120 DQQAAVRILESFL 132
>gi|119503502|ref|ZP_01625585.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2080]
gi|119460564|gb|EAW41656.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2080]
Length = 132
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G KRIG+A+ + P L + + ++G PLNM
Sbjct: 1 MAFDWGLKRIGVAVGNTLLATCEPLCVLNARDGVPNWAAIAELFKEWQPEQLVVGDPLNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ S R F ++ + +P DERLT+ A+ L + + VD+
Sbjct: 61 DDSVAEITRRARRFSR-QLEGRFNLPVSLTDERLTSREARIQLEEQGLPYH---GAVDAH 116
Query: 140 AAALILQEVL 149
AA LILQ L
Sbjct: 117 AAQLILQSWL 126
>gi|296117816|ref|ZP_06836399.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
DSM 20306]
gi|295969047|gb|EFG82289.1| putative Holliday junction resolvase [Corynebacterium ammoniagenes
DSM 20306]
Length = 175
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-----KVTQTALELLSFITTENI 68
+ +D+GT RIG+A+SD R A P + R+ +LL+ I+ I
Sbjct: 14 PGSGRRLGLDVGTVRIGVAVSDRDARLAMPVETVPRETGLKDSDKADIDKLLAIISEYAI 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-------------VFWDERLTT 115
++GLP ++ G+ V + + R++ PF DERLTT
Sbjct: 74 VEIVVGLPRDLQGNGSASVKHAKEIA-FRLKRRLNKPFAPDPTPPHPVPVVRMGDERLTT 132
Query: 116 VSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
V+A L VS KK +D AA ILQ LD
Sbjct: 133 VAATTALRASGVSEKKGRAVIDQAAAVEILQSWLD 167
>gi|312139553|ref|YP_004006889.1| holliday junction resolvase [Rhodococcus equi 103S]
gi|325672563|ref|ZP_08152259.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
33707]
gi|311888892|emb|CBH48205.1| Holliday junction resolvase [Rhodococcus equi 103S]
gi|325556440|gb|EGD26106.1| Holliday junction resolvase family protein [Rhodococcus equi ATCC
33707]
Length = 150
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVT----QTALELLSFITTENIAAFIIGLPLNMNGSE 83
RIG+A DP A P + R K +++ + I+GLP + G
Sbjct: 2 RIGVASCDPECILATPVETVPRSKEKGPDAPDIRRIVAIVEEYEAVEVIVGLPQTLRGER 61
Query: 84 GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAAL 143
G AF + VP DERLTTV+A + L + V K + +D AA
Sbjct: 62 GKAADLASAFARRLRRAVEPVPVRMADERLTTVTASRALRESGVKAKGQRPMIDQAAAVA 121
Query: 144 ILQEVLDRIS 153
ILQ LD S
Sbjct: 122 ILQGWLDERS 131
>gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
gi|146325577|sp|Q1MR19|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase
gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Lawsonia intracellularis PHE/MN1-00]
Length = 142
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ID GTK G+A+SD FA P+ ++ + ++L+ I E+ A ++GLP
Sbjct: 1 MKYVAIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ + SE R F+ + K+ +P E L++ A+ L + + K +
Sbjct: 61 VLFDNSETLITRQVRNFIK-RLKHKIMLPVFLMKEILSSYEAKLDLQSVGYRKNKIKSVL 119
Query: 137 DSIAAALILQEVLDR 151
D AA ILQ LD+
Sbjct: 120 DQQAAVRILQSFLDQ 134
>gi|269965748|ref|ZP_06179845.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B]
gi|269829616|gb|EEZ83853.1| Holliday junction resolvase-like protein [Vibrio alginolyticus 40B]
Length = 136
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + R F + + +P DERL+T A+ L M + VD
Sbjct: 61 HGKDLETITPRARKFAK-RLQGRYGLPVELHDERLSTAEARAELFSMGGYKALSKGNVDC 119
Query: 139 IAAALILQEVLDRI 152
+A +IL+ + +
Sbjct: 120 QSAVVILESWFEAL 133
>gi|91216550|ref|ZP_01253516.1| Holliday junction resolvase-like protein [Psychroflexus torquis
ATCC 700755]
gi|91185344|gb|EAS71721.1| Holliday junction resolvase-like protein [Psychroflexus torquis
ATCC 700755]
Length = 137
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D G KR G+AISD + A + + + Q EL I E++ ++G
Sbjct: 2 KTKVIALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQ---ELKKIIEEESVDTLVVGQ 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P +++G + F+ ++ + DER T+ A Q +ID + +K+R
Sbjct: 59 PKHIDGKPMQLEKNILYFIEDVQALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNK 118
Query: 134 QKVDSIAAALILQEVLDRI 152
VD I+A +ILQ L I
Sbjct: 119 GLVDEISATIILQNYLQYI 137
>gi|152981739|ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
gi|151281816|gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
Length = 131
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A+ + + A P + + + A I+GL
Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G E R F + + R DER ++ V +R +
Sbjct: 61 PRHPDGEEHEMTVRCRRFANQLHGRFNVATV-LVDERYSSA----------VISHQRGEL 109
Query: 136 VDSIAAALILQEVLDRISFLES 157
+D AAA+ILQ+ D + ES
Sbjct: 110 IDDQAAAIILQQYFDDYTQSES 131
>gi|59711040|ref|YP_203816.1| Holliday junction resolvase-like protein [Vibrio fischeri ES114]
gi|62900895|sp|Q5E7R8|RUVX_VIBF1 RecName: Full=Putative Holliday junction resolvase
gi|59479141|gb|AAW84928.1| predicted Holliday junction resolvase [Vibrio fischeri ES114]
Length = 141
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I + D GTK IG AI A P + T ++ I N ++G
Sbjct: 2 SSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVG 61
Query: 75 LPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LP +++G E + F + + + DERL+T A+ L + +
Sbjct: 62 LPTDLHGKELDTITPRAKKFAN-RLHGRFGKQVELHDERLSTAEARADLFEFGGYKALSK 120
Query: 134 QKVDSIAAALILQEVLDR 151
+D +A +IL+ +
Sbjct: 121 GNIDCQSAVVILESWFEN 138
>gi|197335536|ref|YP_002155189.1| hypothetical protein VFMJ11_0433 [Vibrio fischeri MJ11]
gi|226695315|sp|B5F9S6|RUVX_VIBFM RecName: Full=Putative Holliday junction resolvase
gi|197317026|gb|ACH66473.1| conserved hypothetical protein [Vibrio fischeri MJ11]
Length = 141
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I + D GTK IG AI A P + T ++ I N ++G
Sbjct: 2 SSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVG 61
Query: 75 LPLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LP +++G E + F + + + DERL+T A+ L + +
Sbjct: 62 LPTDLHGKELDTITPRAKKFAN-RLHGRFGKQVELHDERLSTAEARADLFEFGGYKALSK 120
Query: 134 QKVDSIAAALILQEVLDR 151
+D +A +IL+ +
Sbjct: 121 GNIDCQSAVVILESWFEN 138
>gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
Length = 145
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ +L Q D G KR+G+A + + L + + I N+
Sbjct: 1 MTTLTTAQRYLCFDFGEKRLGVATGVRTQMSSQALTVLAVTNDQPDWKLIENLIREWNVE 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
AF++GLPLNM+ SE R F + + + +P DERL++ + L ++ +
Sbjct: 61 AFVVGLPLNMDDSEQELTQKARKFAN-RLHGRFGLPTHLHDERLSSAEVKDYLYEIGGYK 119
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
K + +D+ AA LIL+ ++
Sbjct: 120 KLKQNPIDAYAAELILKSFFEQ 141
>gi|206900507|ref|YP_002250744.1| hypothetical protein DICTH_0881 [Dictyoglomus thermophilum H-6-12]
gi|226725513|sp|B5YDY6|RUVX_DICT6 RecName: Full=Putative Holliday junction resolvase
gi|206739610|gb|ACI18668.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
Length = 139
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ +ID G K +GLAISDP R A K L + + ++G P
Sbjct: 1 MRVLAIDWGEKYVGLAISDPLRIIAQGLDVWEIKGEEDFVSRLKRLVEDYQVKEIVLGYP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+++ G E R R +I+ + +P F DERLTT+ A+++L++ ++ RKKR
Sbjct: 61 ISLRGHENERTQKVRHIAE-LIESVIGIPVKFVDERLTTMEAEKVLLEGDIKRKKRKLLK 119
Query: 137 DSIAAALILQEVLDRIS 153
+ AA +ILQ+ LD S
Sbjct: 120 NKQAAVIILQKYLDSSS 136
>gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
Length = 168
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
P+ ++D+G KRIG+A+ D L+R+ +L + + + GLP
Sbjct: 28 PLIALDIGMKRIGVAVCDRFGISCRGVTCLMRRDHG-WPQQLAKVVREYGAKSVVAGLPK 86
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+G+EG + RA + + + +P F DERL+T +A++ L + KK +K+D
Sbjct: 87 NMDGTEGVQAADARA-AVAELKKTLPLPVTFQDERLSTWTAKERLYAQGLREKKVQEKLD 145
Query: 138 SIAAALILQEVLDRISFLESSK 159
AAA+IL++ L L K
Sbjct: 146 QTAAAVILEDFLASNPQLTGKK 167
>gi|314923562|gb|EFS87393.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL001PA1]
Length = 160
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYTAD--RPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E + R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQNVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 134 AAVAILEHVLEQVRLGQS 151
>gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans]
gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans]
Length = 138
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ I ++D G KRIG+A+SDP R F+ P L K Q EL IT + I
Sbjct: 1 MSSKGRILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLI 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IG+P ++GS P+ + + N + + + +DER +T A + L M + ++
Sbjct: 61 IGIPYAIDGSITPKTEECQQ-ILNRLKDVLSISVEGFDERYSTWEANEELKKMGYNWRQA 119
Query: 133 IQKVDSIAAALILQEVLDR 151
+ D+++AA+IL+E L++
Sbjct: 120 KEIKDAMSAAMILKEFLNQ 138
>gi|297562015|ref|YP_003680989.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846463|gb|ADH68483.1| Holliday junction resolvase YqgF [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 161
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D G RIG+A SDP A P + R K + + ++G
Sbjct: 2 RHGVRLAVDPGNARIGVAASDPSGMLASPVETIRRGKGDTQ--RIALLVLERQAREVVVG 59
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-------DMNV 127
P +++G EGP S R F + VP DERLTTV+AQ L+
Sbjct: 60 YPASLSGEEGPAARSARDFARTLAALLHPVPVRLVDERLTTVTAQSQLLSGASFAAKGAK 119
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+ R +D AA ++LQ LD+ E S G
Sbjct: 120 GGRARRSVIDQAAATVLLQSALDQ----ERSTG 148
>gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuK_Q154]
gi|226725506|sp|B6J6M4|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase
gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 141
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G KRIG+A+ A+ L + ++ I T + ++G+P NM
Sbjct: 9 LGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHANVLVVGIPYNM 68
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GSE + R F + + +P DERLTT+ A++ + ++ KR Q +D+
Sbjct: 69 DGSEQTLTFAARKFAR-KLQTRFGLPLSMVDERLTTIEAKRQWYEQGLT--KRPQHLDNY 125
Query: 140 AAALILQEVL 149
AA LIL++ L
Sbjct: 126 AAKLILEQWL 135
>gi|256826955|ref|YP_003150914.1| hypothetical protein Ccur_05110 [Cryptobacterium curtum DSM 15641]
gi|256583098|gb|ACU94232.1| conserved hypothetical protein TIGR00250 [Cryptobacterium curtum
DSM 15641]
Length = 140
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ S+D+G R G+AISDP R A P L +V A + + GLP
Sbjct: 1 MRVLSLDIGQVRCGIAISDPTGRVASPVCVLPSGEVIGCARSFKRLLDDWQPDLLLAGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L ++GS G + RA I +P F DERL++ A+++L + ++ + K+
Sbjct: 61 LTLSGSSGGQAQRIRAQAQ-QIADTSGLPLEFVDERLSSQEAKRMLREEGLTERDMRGKI 119
Query: 137 DSIAAALILQEVLDRISFLES 157
D IAA++ LQ LDR +
Sbjct: 120 DMIAASIFLQAWLDRQRAKKR 140
>gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
Length = 137
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G KR G+A++DP + A + ++T + +E + AF++G+
Sbjct: 1 MPRLLAIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDFL---KKYTLSEQVEAFVVGM 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P ++ ++ AFV ++ + DER T+ A Q +I + R
Sbjct: 58 PKKLDNTDSENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D ++A +ILQ ++
Sbjct: 118 GNIDKVSATIILQSFMESRR 137
>gi|319942918|ref|ZP_08017201.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
51599]
gi|319743460|gb|EFV95864.1| crossover junction endodeoxyribonuclease [Lautropia mirabilis ATCC
51599]
Length = 156
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L + Q + + D G KRIG+A+ + A P L + + + +
Sbjct: 3 LSAATSTVQTLLAFDFGQKRIGVAVGNSLTGAARPLATLTEQTTDGRFARIQTLLKEWQP 62
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN-- 126
++G PL+ +G+ F ++ + +P DER ++V+AQ+ + D +
Sbjct: 63 TGLVVGRPLHPDGTPHEVTALAERFAR-RLEGRFGLPVFLVDERYSSVAAQERMRDEDDE 121
Query: 127 -------VSRKKRIQKVDSIAAALILQEVL 149
+ Q D+ AAA+IL++ L
Sbjct: 122 HVTRGGRRRKGGASQGDDATAAAIILEQYL 151
>gi|289547922|ref|YP_003472910.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
gi|289181539|gb|ADC88783.1| Holliday junction resolvase YqgF [Thermocrinis albus DSM 14484]
Length = 133
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ID GTK +GLA+ D + A P + + + + + ++ ++GLP
Sbjct: 1 MRVLCIDWGTKSLGLALGDTNLKLATPLKPIPNR--GKVLERIAELVKEYDVRLVVVGLP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVP-FVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L +G EG R R+FV + WDER TT A Q+L SRKK +
Sbjct: 59 LTPSGREGQRASQVRSFVEELSALLPEHVGVELWDERYTTYEAVQLL--EGKSRKKVKEL 116
Query: 136 VDSIAAALILQEVLDRI 152
DS++A +ILQE LD +
Sbjct: 117 KDSVSALIILQEYLDSL 133
>gi|86146410|ref|ZP_01064734.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
gi|218710626|ref|YP_002418247.1| Holliday junction resolvase-like protein [Vibrio splendidus LGP32]
gi|85835889|gb|EAQ54023.1| Holliday junction resolvase-like protein [Vibrio sp. MED222]
gi|218323645|emb|CAV19936.1| putative Holliday junction resolvase [Vibrio splendidus LGP32]
Length = 140
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ I ++GL
Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61
Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + + V DERL+T A+ L +M +
Sbjct: 62 PTDLHGKDLAAITPRAKKFAN-RLKGRFGVDVELHDERLSTTEARADLFEMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 NVDNQSAVVILESWFE 136
>gi|84394068|ref|ZP_00992804.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
gi|84375310|gb|EAP92221.1| Holliday junction resolvase-like protein [Vibrio splendidus 12B01]
Length = 140
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ I ++GL
Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61
Query: 76 PLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + + V DERL+T A+ L +M +
Sbjct: 62 PTDLHGKDLAAITPRAKKFAN-RLKGRFGVDVELHDERLSTTEARADLFEMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 NVDNQSAVVILESWFE 136
>gi|253583471|ref|ZP_04860669.1| DNA integration/recombination/inversion protein [Fusobacterium
varium ATCC 27725]
gi|251834043|gb|EES62606.1| DNA integration/recombination/inversion protein [Fusobacterium
varium ATCC 27725]
Length = 139
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ S+D+G RIG+A SD A P + RKK T+ + T EN A ++G+P
Sbjct: 3 KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCTQENTKALVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++G+E + R F+ + + + DERLTTVSA ++L + N ++ +
Sbjct: 62 KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD IAAA+ILQ LD
Sbjct: 122 VDKIAAAIILQTFLD 136
>gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|32130042|sp|Q8RFJ7|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase
gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 138
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLVVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|313764299|gb|EFS35663.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL013PA1]
gi|313771982|gb|EFS37948.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL074PA1]
gi|313791986|gb|EFS40087.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA1]
gi|313802064|gb|EFS43298.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA2]
gi|313807675|gb|EFS46162.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA2]
gi|313810182|gb|EFS47903.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL083PA1]
gi|313812790|gb|EFS50504.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL025PA1]
gi|313816207|gb|EFS53921.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL059PA1]
gi|313818712|gb|EFS56426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL046PA2]
gi|313820482|gb|EFS58196.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA1]
gi|313822712|gb|EFS60426.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA2]
gi|313825354|gb|EFS63068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL063PA1]
gi|313827650|gb|EFS65364.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL063PA2]
gi|313830513|gb|EFS68227.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL007PA1]
gi|313833549|gb|EFS71263.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL056PA1]
gi|313838885|gb|EFS76599.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL086PA1]
gi|314915289|gb|EFS79120.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA4]
gi|314918161|gb|EFS81992.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA1]
gi|314920237|gb|EFS84068.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA3]
gi|314925091|gb|EFS88922.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL036PA3]
gi|314931760|gb|EFS95591.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL067PA1]
gi|314955562|gb|EFS99963.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL027PA1]
gi|314958057|gb|EFT02160.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA1]
gi|314960372|gb|EFT04474.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA2]
gi|314962642|gb|EFT06742.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL082PA1]
gi|314967493|gb|EFT11592.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA1]
gi|314973513|gb|EFT17609.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL053PA1]
gi|314976193|gb|EFT20288.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL045PA1]
gi|314978646|gb|EFT22740.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL072PA2]
gi|314983785|gb|EFT27877.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA1]
gi|314987966|gb|EFT32057.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA2]
gi|314989776|gb|EFT33867.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL005PA3]
gi|315077858|gb|EFT49909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL053PA2]
gi|315080483|gb|EFT52459.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL078PA1]
gi|315084154|gb|EFT56130.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL027PA2]
gi|315085497|gb|EFT57473.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL002PA3]
gi|315088446|gb|EFT60422.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL072PA1]
gi|315096060|gb|EFT68036.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL038PA1]
gi|315098689|gb|EFT70665.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL059PA2]
gi|315101308|gb|EFT73284.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL046PA1]
gi|315105743|gb|EFT77719.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL030PA1]
gi|315108663|gb|EFT80639.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL030PA2]
gi|327326340|gb|EGE68130.1| putative Holliday junction resolvase [Propionibacterium acnes
HL096PA2]
gi|327330411|gb|EGE72160.1| putative Holliday junction resolvase [Propionibacterium acnes
HL097PA1]
gi|327331785|gb|EGE73522.1| putative Holliday junction resolvase [Propionibacterium acnes
HL096PA3]
gi|327443562|gb|EGE90216.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL013PA2]
gi|327445766|gb|EGE92420.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL043PA2]
gi|327448251|gb|EGE94905.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL043PA1]
gi|327450627|gb|EGE97281.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA3]
gi|327453295|gb|EGE99949.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL092PA1]
gi|327454035|gb|EGF00690.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL083PA2]
gi|328753293|gb|EGF66909.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL025PA2]
gi|328753317|gb|EGF66933.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL020PA1]
gi|328754045|gb|EGF67661.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL087PA1]
gi|328760698|gb|EGF74264.1| putative Holliday junction resolvase [Propionibacterium acnes
HL099PA1]
Length = 147
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 3 LAIDWGKARIGVAASDRDAILAFPVETVHTAD--RPVQRLAEIVAEYEPVEVIMGLPVAL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 61 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120
Query: 140 AAALILQEVLDRISFLES 157
AA IL+ VL+++ +S
Sbjct: 121 AAVAILEHVLEQVRLGQS 138
>gi|294155488|ref|YP_003559872.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
gi|291600199|gb|ADE19695.1| putative Holliday junction resolvase [Mycoplasma crocodyli MP145]
Length = 139
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
++DLG++ G AISD A E+L ++ I I+G
Sbjct: 1 MRKLALDLGSRTCGFAISDELEVIAIGLDNFRFFEDDYEAVKNEVLRYMKEYKIDGIILG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +GS+ + F +++ + + +P ++ DE+ +T +A++ILI + ++R+KR
Sbjct: 61 YPKKNDGSKSDSTYRVENF-KDLLSKFIDIPIIYVDEQYSTKNAEKILIALGLTRQKRKN 119
Query: 135 KVDSIAAALILQEVLDR 151
D +AA LIL++ L+
Sbjct: 120 FKDKLAAQLILEDYLNY 136
>gi|237736820|ref|ZP_04567301.1| DNA integration/recombination/invertion protein [Fusobacterium
mortiferum ATCC 9817]
gi|229420682|gb|EEO35729.1| DNA integration/recombination/invertion protein [Fusobacterium
mortiferum ATCC 9817]
Length = 139
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SD A P + R+KV + + EN + +IG+P
Sbjct: 3 KKYVALDVGDVRIGVAKSDIMGILATPLEVIDRRKVKA-VKRIEEILIQENTKSLVIGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++G+E + R F+ + + DERLTTVSA ++L + N ++ +
Sbjct: 62 KSLDGTEKRQAEKVREFIEKLNKSIEGLEIFEVDERLTTVSADRLLNETNKKGALEKRKV 121
Query: 136 VDSIAAALILQEVLDR 151
VD +AAA+ILQ LDR
Sbjct: 122 VDKVAAAIILQTFLDR 137
>gi|148980485|ref|ZP_01816082.1| Holliday junction resolvase-like protein [Vibrionales bacterium
SWAT-3]
gi|145961210|gb|EDK26524.1| Holliday junction resolvase-like protein [Vibrionales bacterium
SWAT-3]
Length = 140
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P K ++ I ++GL
Sbjct: 2 SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + F + + + V DERL+T A+ L DM +
Sbjct: 62 PTDLHGRALETITPRAKKFAN-RLKGRFGVDVELHDERLSTAEARADLFDMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD+ +A +IL+ +
Sbjct: 121 NVDNQSAVVILESWFE 136
>gi|149191949|ref|ZP_01870180.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
gi|148834216|gb|EDL51222.1| Holliday junction resolvase-like protein [Vibrio shilonii AK1]
Length = 141
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++ I + D GTK IG AI A P K ++ + + ++G
Sbjct: 2 TSRTIIAFDYGTKSIGSAIGQEVTGTASPLKAFKAKDGIPNWDDIEAMLKEWQPDLIVVG 61
Query: 75 LPLNMNGSE-GPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
LP +++G + F + + R + DERL+T A+ L +M +
Sbjct: 62 LPTDLHGKALEEITARAKKFANRVHGR-FGLQVELHDERLSTAEARAELFEMGGYKALSK 120
Query: 134 QKVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 GNVDCQSAVVILESWFE 137
>gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 142
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 75/134 (55%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +D+G ++IG+A+SD A P+ + K + + ++L I +I ++GL
Sbjct: 1 MERILGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P ++NG +G + T++FV + + + ++ DER T+ A + L M++ + K +
Sbjct: 61 PKDINGKDGEQALWTKSFVEKLTLKNENIKIIYIDERYTSKLALKNLSHMSMKKVKDKEL 120
Query: 136 VDSIAAALILQEVL 149
+DS+AAA IL+ L
Sbjct: 121 IDSLAAASILETYL 134
>gi|156975830|ref|YP_001446737.1| Holliday junction resolvase-like protein [Vibrio harveyi ATCC
BAA-1116]
gi|156527424|gb|ABU72510.1| hypothetical protein VIBHAR_03575 [Vibrio harveyi ATCC BAA-1116]
Length = 136
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + + F + + + +P DERL+T A+ L + + +D
Sbjct: 61 HGKDLETITPRAKKFAN-RLHGRYGLPVELHDERLSTAEARAELFSIGGYKALSKGNIDC 119
Query: 139 IAAALILQEVLDRI 152
+A +IL+ + +
Sbjct: 120 QSAVVILESWFENL 133
>gi|302335909|ref|YP_003801116.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
gi|301319749|gb|ADK68236.1| Holliday junction resolvase YqgF [Olsenella uli DSM 7084]
Length = 137
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G R+G+A SD A P L ++V + + + G P
Sbjct: 1 MRALALDIGEVRVGIAASDASGAVASPVRVLPAQEVLSCSRTFRRILEDYEPDVLVCGRP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L M G +GP+ I +P F DERL++ A++IL + S + +V
Sbjct: 61 LTMAGEDGPQADRVMGQAR-RIATSCDLPLEFADERLSSQEAKRILREEGYSERDMRGRV 119
Query: 137 DSIAAALILQEVLD 150
D +AA+L LQ LD
Sbjct: 120 DMVAASLFLQAWLD 133
>gi|187927716|ref|YP_001898203.1| Holliday junction resolvase-like protein [Ralstonia pickettii 12J]
gi|226731641|sp|B2U7A9|RUVX_RALPJ RecName: Full=Putative Holliday junction resolvase
gi|187724606|gb|ACD25771.1| Holliday junction resolvase YqgF [Ralstonia pickettii 12J]
Length = 143
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
S+ + + D G KRIG+A+ + R A + + V ++ +
Sbjct: 10 ASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPVG 69
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
F++G+P++ +G E P + + F + ++ R +P + DER ++++AQ D S
Sbjct: 70 FVVGMPVHPDGEEQPMIKLAKRFGNQLLGR-YGLPVTWVDERYSSIAAQ----DAGAS-- 122
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141
>gi|317507137|ref|ZP_07964896.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
BAA-974]
gi|316254558|gb|EFV13869.1| hypothetical protein HMPREF9336_01267 [Segniliparus rugosus ATCC
BAA-974]
Length = 164
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-------ALELLSFITTE 66
P P +DLG RIGLAISD G FA P L R L +
Sbjct: 3 DPLGPRLGVDLGQARIGLAISDQGGVFAAPLMALERATGKPPKLALADDLAALAGVVEEH 62
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
IA ++G P N+ G + FV + VP DER+TT+ A + L +
Sbjct: 63 RIALVVVGWPRNLKGEAARAARTAEEFVERLRAAVAPVPVRLVDERVTTLLAHRQLREAG 122
Query: 127 VSRKK-----RIQKVDSIAAALILQEVLD 150
VS K+ + VD +AA ILQ LD
Sbjct: 123 VSGKRLVRKGQRGVVDQLAATAILQGWLD 151
>gi|314966608|gb|EFT10707.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL082PA2]
gi|315092870|gb|EFT64846.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL060PA1]
gi|315103609|gb|EFT75585.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL050PA2]
gi|327327431|gb|EGE69207.1| putative Holliday junction resolvase [Propionibacterium acnes
HL103PA1]
Length = 160
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYTAD--RPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRIS 153
AA IL+ VL+++
Sbjct: 134 AAVAILEHVLEQVR 147
>gi|298243731|ref|ZP_06967538.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
44963]
gi|297556785|gb|EFH90649.1| Holliday junction resolvase YqgF [Ktedonobacter racemifer DSM
44963]
Length = 162
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D+G RIG+A D A P V + QT + I + +IG
Sbjct: 3 MGRLLALDVGEARIGVAACDATGFLASPYTTIYVTRDEAQTWDAIERLIAETDAEGLVIG 62
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++++G + AFV + + VP FWDERL+TV A+++ + K
Sbjct: 63 LPVSLDGQIHAQGERIMAFVE-RLKAHIAVPVTFWDERLSTVEAERLRTQQGGRKSKHTG 121
Query: 135 --------------KVDSIAAALILQEVLD 150
++D++AAA+ LQE LD
Sbjct: 122 GRQHSQGKRRRPGHEIDALAAAVFLQEYLD 151
>gi|284929110|ref|YP_003421632.1| hypothetical protein UCYN_05470 [cyanobacterium UCYN-A]
gi|284809569|gb|ADB95274.1| conserved hypothetical protein TIGR00250 [cyanobacterium UCYN-A]
Length = 136
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KRIG+A D A + R+ T +L I T ++GLP+ M
Sbjct: 1 MGLDVGKKRIGVAGCDGTGLIATELITIHRQSFTSDIEKLKKLIETREATKLVVGLPILM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + + F + I + +P + DER T++ A L VD
Sbjct: 61 DGSLGSQAKQIQKFGN-RISTILNLPIEYIDERFTSLEAVSELKAQRKYSSYEKGLVDCY 119
Query: 140 AAALILQEVLDRI 152
AA +ILQ LD+
Sbjct: 120 AAKIILQRWLDQR 132
>gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 152
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 68/144 (47%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP
Sbjct: 4 GNFLAIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVFVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M+G EG R++ ++ R +P DERL++ A L V +++ + V
Sbjct: 64 KLMSGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMV 123
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA IL L+ ++ + G
Sbjct: 124 DQLAAVTILTRALETLTQTGNLPG 147
>gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
Length = 152
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 69/144 (47%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP
Sbjct: 4 GNFLAIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVFVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M+G EG R++ ++ R +P DERL++ A L + V +++ + V
Sbjct: 64 KLMSGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQVGVCARRQKEMV 123
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA IL L+ ++ + G
Sbjct: 124 DQLAAVTILTRALETLTQTGNLPG 147
>gi|257468001|ref|ZP_05632097.1| DNA integration/recombination/invertion protein [Fusobacterium
ulcerans ATCC 49185]
gi|317062287|ref|ZP_07926772.1| DNA integration/recombination/inversion protein [Fusobacterium
ulcerans ATCC 49185]
gi|313687963|gb|EFS24798.1| DNA integration/recombination/inversion protein [Fusobacterium
ulcerans ATCC 49185]
Length = 139
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ S+D+G RIG+A SD A P + RKK T+ + EN A ++G+P
Sbjct: 3 KKYISLDVGDVRIGVAKSDIMGIVATPLEVIDRKK-TKAVKRIKELCIQENTKALVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++G+E + R F+ + + + DERLTTVSA ++L + N ++ +
Sbjct: 62 KSLDGTEKRQAEKVREFIAKLNKEIEGLEIIEVDERLTTVSADRMLNESNKKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD IAAA+ILQ LD
Sbjct: 122 VDKIAAAIILQTFLD 136
>gi|119358338|ref|YP_912982.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
266]
gi|119355687|gb|ABL66558.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides DSM
266]
Length = 142
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + I +ID GTKRIGLA +DP + FA R + ++ + E +
Sbjct: 3 LTEKKRILAIDYGTKRIGLAQTDPLQLFASAVGTFERTTLFALLEKMAANNEIE---KIL 59
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL+ + S F+ + +P DE ++ A QILI +K R
Sbjct: 60 VGYPLSSDNSPNAMTAVVDRFIMELQLAFPSLPVETADEHHSSRDAHQILIASGTRKKAR 119
Query: 133 IQK--VDSIAAALILQEVLD 150
+K +DS AA +IL++ L+
Sbjct: 120 KEKGRIDSAAACVILRDYLE 139
>gi|257452889|ref|ZP_05618188.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_5R]
gi|257466746|ref|ZP_05631057.1| DNA integration/recombination/invertion protein [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
Length = 139
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SD A P + R+K+ ++ EN + ++G+P
Sbjct: 3 KKYLALDVGDVRIGVAKSDIMGIIASPLETIDRRKMKP-VKRIIELCEQENTKSIVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQK 135
+++GSE + R F+H + V DER TTV+A QIL +MN ++ +
Sbjct: 62 KSLDGSEKRQAEKVRIFIHALKSAIPGVEIFEVDERFTTVTADQILTEMNRKGALEKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD +AA+LILQ+ L+
Sbjct: 122 VDKVAASLILQQYLN 136
>gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
Length = 142
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
SL + I +ID GTKRIG A SDP + FA P + R ++ + ++ E I
Sbjct: 2 SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRAELFEKLEQMAR---NEEIDKI 58
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++G PLN +G++ F+ + +P DE ++ A QIL +SRK+
Sbjct: 59 LVGYPLNDDGTQNRMTGVIDRFIEELALGFPGLPVERVDEHRSSRDAMQILAASGISRKE 118
Query: 132 --RIQKVDSIAAALILQEVLDRIS 153
R ++D AA +IL+E LD
Sbjct: 119 RNRKGRLDCAAACVILREYLDARR 142
>gi|260775563|ref|ZP_05884460.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608744|gb|EEX34909.1| putative Holliday junction resolvase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 135
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPNLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + + F + + + +P DERL+T A+ L M + VD
Sbjct: 61 HGKDLETITPRAKKFAN-RLHGRFGLPVELHDERLSTTEARSELFSMGGYKALSKGNVDC 119
Query: 139 IAAALILQEVLD 150
+A +IL+ +
Sbjct: 120 QSAVVILESWFE 131
>gi|302344298|ref|YP_003808827.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
gi|301640911|gb|ADK86233.1| Holliday junction resolvase YqgF [Desulfarculus baarsii DSM 2075]
Length = 136
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G RIG+A+SD A P L R+ + + E ++GLPL+
Sbjct: 1 MALDVGRARIGVAVSDEAGLTAQPLCVLRRQGRDEDVRAIGRLAQREGARLIVLGLPLHN 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ GP + + R++ +P F +E TT+ A + +++ ++SRK+R + VD +
Sbjct: 61 D-QIGPEAQRVISLGR-RLQRRLGLPVGFTNEEDTTIEAHEAMLEADLSRKRRAEVVDKV 118
Query: 140 AAALILQEVLDRISF 154
AAALIL+ LD +
Sbjct: 119 AAALILRRWLDGMRE 133
>gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
Length = 139
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIG+A SD FAHP + R K T+ + EN + ++G+P
Sbjct: 3 KKYLALDVGDVRIGVARSDAMGMFAHPLEVIDRTK-TKAVKRVQELCRQENTKSIVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQK 135
+++G E + R F+ + + + DERL+T+SA+++L + N + + +
Sbjct: 62 KSLDGQEKRQAEKVREFIEKLNKSIEGLEIIEIDERLSTISAERMLNETTNKDARGKRKV 121
Query: 136 VDSIAAALILQEVLD 150
VD IAAA+ILQ LD
Sbjct: 122 VDKIAAAIILQTYLD 136
>gi|314981335|gb|EFT25429.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA3]
gi|315092197|gb|EFT64173.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL110PA4]
Length = 160
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVYTAD--RPVQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 74 NGTEQLAAQDVRDAGRQLAEAIDPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 133
Query: 140 AAALILQEVLDRIS 153
AA IL+ VL+++
Sbjct: 134 AAVAILEHVLEQVR 147
>gi|300309806|ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1]
gi|300072591|gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae
SmR1]
Length = 128
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I + D G KRIG+A+ + G + A P + + I A ++GL
Sbjct: 1 MDTILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+ +G+E R F + + + V V DER ++ V + +R ++
Sbjct: 61 PLHPDGAEHEMSVRCRRFAN-QLHGRYGVEVVLVDERYSSA----------VIQHQRGEQ 109
Query: 136 VDSIAAALILQEVLD 150
+D AAA+ILQ+ D
Sbjct: 110 IDDQAAAIILQQYFD 124
>gi|257126596|ref|YP_003164710.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
gi|257050535|gb|ACV39719.1| Holliday junction resolvase YqgF [Leptotrichia buccalis C-1013-b]
Length = 138
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A DP A + R K + + E ++G+
Sbjct: 1 MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTKTNP-VERIKEILDDEGTKKVVVGM 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G++ +V FV + + +F DER TT A+ L + + K+R +
Sbjct: 60 PKSLDGTKKRQVEKVEEFVEELKKSISNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119
Query: 135 KVDSIAAALILQEVLDRIS 153
VD +AA++ILQ+ LD +
Sbjct: 120 VVDMVAASIILQKYLDTLP 138
>gi|323493583|ref|ZP_08098704.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG
20546]
gi|323312106|gb|EGA65249.1| Holliday junction resolvase-like protein [Vibrio brasiliensis LMG
20546]
Length = 140
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLLVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P ++ G + + F + + + + DERL+T+ A+ L +M +
Sbjct: 62 PTDLYGKDLETITPRAKKFAN-RLHGRFGLAVELHDERLSTMEARADLFEMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 187
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
M +L E+L + L K + +D+G+K +GLA+SD R A P L R K
Sbjct: 1 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 60
Query: 56 AL--ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
+ + + + ++A ++G P N+ G P V + + + + +WDE
Sbjct: 61 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 120
Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153
T+ + +L +N++ R + D AA ILQ LD ++
Sbjct: 121 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 163
>gi|296270019|ref|YP_003652651.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
gi|296092806|gb|ADG88758.1| Holliday junction resolvase YqgF [Thermobispora bispora DSM 43833]
Length = 163
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G+ RIG+A SDP A P + R + ++GLP ++
Sbjct: 7 IGVDVGSVRIGVARSDPSGVLAVPVETVRR--GRDDLDRIAEIAAEHEAIEVVVGLPTSL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G E + R + + R +P DERLTTV+AQ+ L + +++ +D
Sbjct: 65 SGRESHAAKAAREYAARLAARLAPIPVRLVDERLTTVTAQRRLRSSGIRARQQRDIIDQA 124
Query: 140 AAALILQEVLD 150
AA +LQ LD
Sbjct: 125 AAVELLQAALD 135
>gi|229817701|ref|ZP_04447983.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
20098]
gi|229785490|gb|EEP21604.1| hypothetical protein BIFANG_02973 [Bifidobacterium angulatum DSM
20098]
Length = 154
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGL 75
IDLG R+GLA+SDP FAHP V + +++ I EN+ ++GL
Sbjct: 1 MTWLGIDLGDARVGLAVSDPELTFAHPIGNVQVYGDSFRAIDDVIYTIEDENVDHVVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYV------------PFVFWDERLTTVSAQQILI 123
PL ++G EG R + N+ R DERLTTVSA + L
Sbjct: 61 PLLLSGEEGKSAKKARRWASNLAKRIDLYMQSGETTLEQVPEIELMDERLTTVSAHRQLR 120
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
N++ + VD +A +ILQ LD+ + E
Sbjct: 121 QANIAERGHRPVVDQQSAVVILQAALDKRNSRE 153
>gi|254284129|ref|ZP_04959097.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR51-B]
gi|219680332|gb|EED36681.1| conserved hypothetical protein TIGR00250 [gamma proteobacterium
NOR51-B]
Length = 143
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 1/133 (0%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G ++IG+AI + P + + ++ I ++G PL
Sbjct: 7 TVMGFDYGLRQIGVAIGNTLLGQGKPLAIVTARDGKPDWSQIERLIGEWQPDHLVVGKPL 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
NM+GS+ F ++ + P DERLT+ A+ D + +D
Sbjct: 67 NMDGSDSEMGARAAKFSR-QLNGRFAKPVDLVDERLTSREAKSQSRDRGHNGNYTTDPID 125
Query: 138 SIAAALILQEVLD 150
AAALIL +
Sbjct: 126 DEAAALILNTWFE 138
>gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 199
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT 55
M +L E+L + L K + +D+G+K +GLA+SD R A P L R K
Sbjct: 13 MRLLKAEELFRKLLEGGSKKKARLLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNIN 72
Query: 56 AL--ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
+ + + + ++A ++G P N+ G P V + + + + +WDE
Sbjct: 73 LMADDFKTLVNNYSLAGLVVGYPFNLQGQSSPDASQVSLLVGELCKTGKLDDLSYTYWDE 132
Query: 112 RLTTVSAQQILIDMNVS-RKKRIQKVDSIAAALILQEVLDRIS 153
T+ + +L +N++ R + D AA ILQ LD ++
Sbjct: 133 NFTSKCVEALLNPLNLNDRVETKTMTDKFAAVCILQGYLDNMN 175
>gi|258653459|ref|YP_003202615.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
44233]
gi|258556684|gb|ACV79626.1| Holliday junction resolvase YqgF [Nakamurella multipartita DSM
44233]
Length = 169
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------------KVTQTALELLS 61
+D+GT R+G+A SDP A P L R + T L
Sbjct: 13 PAKGVRLGVDVGTVRVGVARSDPAGILATPVTTLQRSAAPSSGKSGDRAEPTADLSALRD 72
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ ++ ++GLP + G EG V + RA+ + VP V+ DERLTTV+A ++
Sbjct: 73 LVVEHDVVEVVVGLPTTLRGMEGSAVTAARAYGQALAALIAPVPVVYVDERLTTVTADRV 132
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
L + K R VD +AA ILQ LD ++ S
Sbjct: 133 LAQAGIKGKARRAVVDQVAATRILQNRLDLLAAGRRS 169
>gi|134095903|ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans]
gi|133739806|emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans]
Length = 131
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A+ + + A P + + +T A I+GL
Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G+E R F + + + V V DER ++ V +R
Sbjct: 61 PRHPDGAEHEMTVRCRRFAN-QLHGRFDVATVLVDERYSSA----------VISHQRGDL 109
Query: 136 VDSIAAALILQEVLDRISFLES 157
+D AAA+ILQ+ D + +S
Sbjct: 110 IDDQAAAIILQQYFDDHTESKS 131
>gi|261250167|ref|ZP_05942743.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
gi|260939283|gb|EEX95269.1| putative Holliday junction resolvase [Vibrio orientalis CIP 102891]
Length = 141
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P ++ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDDIEKQIKEWQPDLVVVGL 61
Query: 76 PLNMNGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +++G + + F + + + V DERL+T A+ L M +
Sbjct: 62 PTDLHGRDLETITPRAKKFAN-RLHGRFGVAVELHDERLSTTEARADLFAMGGYKALSKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
gi|146325586|sp|Q3B192|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase
gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
Length = 141
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+KP I ID GTKRIGLA++DP + FA P + EL + + + +
Sbjct: 1 MKPKGRIVGIDYGTKRIGLAMTDPLQLFASPVGTFEPGGLHH---ELRRIMQGDTVDLAV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G P+ +GS FV + + DE ++ A +IL SRK R
Sbjct: 58 VGSPVCDDGSGNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVR 117
Query: 133 IQK--VDSIAAALILQEVLDRIS 153
+K +DS AA ++L L+
Sbjct: 118 REKGRLDSAAACVLLTRFLEENR 140
>gi|73540412|ref|YP_294932.1| Holliday junction resolvase-like protein [Ralstonia eutropha
JMP134]
gi|146325595|sp|Q474U5|RUVX_RALEJ RecName: Full=Putative Holliday junction resolvase
gi|72117825|gb|AAZ60088.1| Holliday junction resolvase YqgF [Ralstonia eutropha JMP134]
Length = 141
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + + + D G K+IG+A+ + R A L V + I +
Sbjct: 9 LPRDGTVLAFDYGEKKIGVALGNFVTRHATALTILPNVSVEGRFQAVGELIREWTPVQLV 68
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P+N G E P + R F + ++ + +P + DER ++ A R
Sbjct: 69 VGMPVNPEGGEQPSMRLARRFGN-QLNGRYSLPVEWVDERYSSRMAAM--------GGAR 119
Query: 133 IQKVDSIAAALILQEVLDRIS 153
++D+ AA +ILQ+ D++
Sbjct: 120 RGELDAEAARIILQQYFDQLP 140
>gi|326382144|ref|ZP_08203836.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198874|gb|EGD56056.1| Holliday junction resolvase-like protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 142
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 66/138 (47%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++P +ID+G+ R+G+A+ DP A P + R K ++ IT + +
Sbjct: 2 IEPRGRRIAIDVGSVRVGVAVCDPDGILATPVETVRRSKDGADVARIVDLITEYDAVGVV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
IGLP + G EGP V + R F + V F+DERLTTV+A L V K
Sbjct: 62 IGLPRTLRGEEGPAVRAARYFGRQLASEAEGVSIEFYDERLTTVTATTALRASGVKAKDA 121
Query: 133 IQKVDSIAAALILQEVLD 150
+D AA ILQ LD
Sbjct: 122 RAVIDQAAAVAILQGWLD 139
>gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505]
gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505]
Length = 171
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D+G RIG+A D + P L R + E + + I+GLP +M
Sbjct: 19 IAFDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHM 78
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVP-FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G R + ++ R DERLTTVSA + L + + VD
Sbjct: 79 GGGSSSSTRDARQWARDLASRLPQRVCVRLVDERLTTVSAHRDLHAAGLKERSFRGIVDQ 138
Query: 139 IAAALILQEVL 149
AA +IL++ +
Sbjct: 139 AAAVVILEQAI 149
>gi|256832582|ref|YP_003161309.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
gi|256686113|gb|ACV09006.1| Holliday junction resolvase YqgF [Jonesia denitrificans DSM 20603]
Length = 167
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 13/154 (8%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-------------ALELLSFITTE 66
+D+G R+G+A DP A P L R + +L
Sbjct: 10 LGVDVGQVRVGVAACDPDTILATPVETLARDRSVSYVAGGKVPSVLPTDIEDLREIAEER 69
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
A +GLP +++G+ G + + ++ DERLT+ +A L D
Sbjct: 70 LAVAVYVGLPKHLSGARGVSAEMAVNYASLVQRVLPHLEVRLVDERLTSKTAHSALHDAG 129
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ +D AA +IL L+ L S G
Sbjct: 130 RRAREHRTVIDQAAAVVILDTALEAEKRLGSWAG 163
>gi|150025799|ref|YP_001296625.1| Holliday junction resolvase-like protein [Flavobacterium
psychrophilum JIP02/86]
gi|167012723|sp|A6H0E5|RUVX_FLAPJ RecName: Full=Putative Holliday junction resolvase
gi|149772340|emb|CAL43818.1| Putative Holliday junction resolvase [Flavobacterium psychrophilum
JIP02/86]
Length = 137
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR G+AI+D + A + + + + T E + +IG
Sbjct: 1 MPRILAIDYGQKRTGIAITDEMQIIASGLTTIASETSIAFLRD---YFTKEKVEKVLIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MNG FV + + DER T+ A Q +ID + +K+R
Sbjct: 58 PKQMNGEPSQSTDIIEKFVTKFKNNFPDMAIERVDERFTSKMAFQTMIDSGLKKKQRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A ++LQ+ L
Sbjct: 118 ALVDEISATIMLQDYL 133
>gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 138
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKK+ ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKI-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKREIENLEIIEVDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|254508602|ref|ZP_05120718.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
16]
gi|219548453|gb|EED25462.1| conserved hypothetical protein TIGR00250 [Vibrio parahaemolyticus
16]
Length = 136
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S D GTK IG AI A P ++ I ++GLP ++
Sbjct: 1 MSFDFGTKSIGSAIGQEVTGTASPLRAFKANDGIPNWDDIEKLIKEWQPDLLVVGLPTDL 60
Query: 80 NGSEGPR-VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + + F + + + +P DERL+T A+ L +M + VD
Sbjct: 61 HGRDLETITPRAKKFAN-RLHGRYGLPVELHDERLSTTEARADLFNMGGYKALSKGNVDC 119
Query: 139 IAAALILQEVLD 150
+A +IL+ +
Sbjct: 120 QSAVVILESWFE 131
>gi|282853868|ref|ZP_06263205.1| RNAse YqgF [Propionibacterium acnes J139]
gi|282583321|gb|EFB88701.1| RNAse YqgF [Propionibacterium acnes J139]
Length = 147
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 3 LAIDWGKARIGVAASDRDAILAFPVETVYTAD--RPVQRLAEIVAEYEPVEVIMGLPVAL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L + + +K+ +D
Sbjct: 61 NGTEQLAAQDVRDAGRQLAEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQA 120
Query: 140 AAALILQEVLDRIS 153
AA IL+ VL+++
Sbjct: 121 AAVAILEHVLEQVR 134
>gi|312883850|ref|ZP_07743567.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368308|gb|EFP95843.1| Holliday junction resolvase-like protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 140
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GTK IG AI A P E+ I ++GL
Sbjct: 2 SRTIMAFDFGTKSIGSAIGQEVTGTASPLKAFKANDGIPNWDEIEKQIKEWQPHLIVVGL 61
Query: 76 PLNMNGSEGP-RVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P++++G + F + + + V DERL+T A+ L M +
Sbjct: 62 PMDLHGKALESITQRAKKFAN-RLHGRFGVDVELHDERLSTTEARSELFAMGGYKALTKG 120
Query: 135 KVDSIAAALILQEVLD 150
VD +A +IL+ +
Sbjct: 121 NVDCQSAVVILESWFE 136
>gi|225164228|ref|ZP_03726502.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
gi|224801167|gb|EEG19489.1| Holliday junction resolvase YqgF [Opitutaceae bacterium TAV2]
Length = 144
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID GT+RIGLA D A P P L + L + + I ++G P
Sbjct: 1 MRALGIDYGTRRIGLAYGDELG-IATPIPALTDADPAKRRTALAAVVKQRRITDLVLGYP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NM+GS G + AF + + +P DERLT+ A+ + + + V
Sbjct: 60 YNMDGSAGFKAKEVDAFAE-SLRAEFALPVHLIDERLTSHMAESGMSQKKLREIRSQGIV 118
Query: 137 DSIAAALILQEVLDRI 152
DS AAALILQ+ LD+
Sbjct: 119 DSRAAALILQDFLDQR 134
>gi|294786853|ref|ZP_06752107.1| putative Holliday junction resolvase [Parascardovia denticolens
F0305]
gi|315226489|ref|ZP_07868277.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Parascardovia denticolens DSM 10105]
gi|294485686|gb|EFG33320.1| putative Holliday junction resolvase [Parascardovia denticolens
F0305]
gi|315120621|gb|EFT83753.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Parascardovia denticolens DSM 10105]
Length = 176
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFI 72
+DLG R+G+AISDP FAHP V Q E+ I ++ +
Sbjct: 28 PSRSVWLGLDLGNARVGVAISDPELTFAHPEGNIRVAGDYFQAIDEITDLIDDHQVSHVV 87
Query: 73 IGLPLNMNGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
IG PL ++G+EG R F + + V DER+TTV A L+D +
Sbjct: 88 IGYPLQLDGTEGKSAKKARRFSLALEKRLALYQIQGVSLELKDERMTTVRAHSQLMDAGI 147
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
++ VD +A LILQ LD
Sbjct: 148 GSRRHRPLVDQQSAVLILQAALD 170
>gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 152
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 68/144 (47%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ID+G RIG+A S G A P L + ELL+ IT N AA +GLP
Sbjct: 4 GNFLAIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVFVGLP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M+G EG R++ ++ R +P DERL++ A L V +++ + V
Sbjct: 64 KLMSGKEGEAARMARSYARRLVRRLGELPVHLIDERLSSADAHAKLQQAGVCARRQKEMV 123
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
D +AA IL L+ ++ + G
Sbjct: 124 DQLAAVTILTRALETLTQTGNLPG 147
>gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
Length = 161
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ L DL + K + + DLG K+ G+A+ + + + K Q ++
Sbjct: 1 MTKLDNYDLKEINKKKGSVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIK 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ ++GLP N + S I++ + +P F +E ++ SA++
Sbjct: 61 QLVNEWQPIYLVLGLPSNRDSSANETTKFCLNTAK-EIEKNINLPIFFVNENYSSTSAEE 119
Query: 121 ILIDMNVSRKKRI-QKVDSIAAALILQEVLDRI 152
++ D+ ++K VD IAA +ILQ + +
Sbjct: 120 LIKDLGNKKQKNNISLVDQIAADIILQSHFNEV 152
>gi|88800503|ref|ZP_01116066.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
gi|88776734|gb|EAR07946.1| Holliday junction resolvase-like protein [Reinekea sp. MED297]
Length = 142
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
D G IG+A A + + ++ + F++G+P N
Sbjct: 5 WLGFDWGLGWIGVASGQTETYTASKLKPIRARDGIPNWTDIDQLVQEWRPTGFVVGIPYN 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GSE V R F + + +P DERLTT A Q + + +K + +DS
Sbjct: 65 MDGSESQMVVRARKF-RKRLHGRFGLPAEEADERLTTREAWQHMNPASSLKKAKADDLDS 123
Query: 139 IAAALILQEVLDRIS 153
+AA +ILQ L++
Sbjct: 124 VAAQIILQSWLEQRR 138
>gi|309780780|ref|ZP_07675521.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
gi|308920462|gb|EFP66118.1| Holliday junction resolvase [Ralstonia sp. 5_7_47FAA]
Length = 143
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KRIG+A+ + R A + + V ++ + F++G+P
Sbjct: 16 GTLLAFDYGEKRIGVALGNSITRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMP 75
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
++ +G E P + + F + + + +P + DER ++++AQ D S +
Sbjct: 76 VHPDGEEQPMIKLAKRFGN-QLHGRYGLPVTWVDERYSSIAAQ----DAGAS----DDVL 126
Query: 137 DSIAAALILQEVLDR 151
D+ AA +ILQ+ D
Sbjct: 127 DAEAARIILQQFFDE 141
>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length = 167
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 6/146 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-----KKVTQTALELLSFITTENI 68
ID+G R+G+A+SDP A P + R L+ T +
Sbjct: 14 PGRGRRLGIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEV 73
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF-VFWDERLTTVSAQQILIDMNV 127
++G+PL ++GS G + R + DER+TTV AQ L +
Sbjct: 74 VEIVVGMPLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYADERMTTVMAQSRLHAAGI 133
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
K + +D AA ILQ LDR +
Sbjct: 134 DVKSGRKIIDQAAAVEILQSWLDRRA 159
>gi|255327163|ref|ZP_05368238.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
gi|255295781|gb|EET75123.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
Length = 178
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+D+G R+G A+SDP A P L R K L I + +GLP
Sbjct: 1 MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 60
Query: 79 MNGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G + P R + + K ++ DERLTTVSA + L + VS +
Sbjct: 61 MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + +S G
Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQSVAG 147
>gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
Length = 184
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL-LSFITTENIAAFIIGLPLN 78
+D+G R+G ++SDP A P L R + + + ++ +GLP
Sbjct: 10 MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 69
Query: 79 MNGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G E R + + ++ DERLTTVSA + L + VS +
Sbjct: 70 MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 129
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + ++ G
Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQAVAG 156
>gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|189046091|sp|B0REK3|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase
gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 161
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK-VTQTALELLSFITTENIAAFIIGLPLN 78
++D+G RIGLA SDP A P + R + +L + ++GLPL
Sbjct: 7 LAVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELVVGLPLA 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G F + + DERL+TVSAQ L +K+ +D
Sbjct: 67 LSGRATASTDDAEGFAR-RLADATEIRVRLVDERLSTVSAQGALRASGRGSRKQKPVIDQ 125
Query: 139 IAAALILQEVLD 150
+AA +ILQ L+
Sbjct: 126 VAAVIILQHALE 137
>gi|256825089|ref|YP_003149049.1| hypothetical protein Ksed_12520 [Kytococcus sedentarius DSM 20547]
gi|256688482|gb|ACV06284.1| conserved hypothetical protein TIGR00250 [Kytococcus sedentarius
DSM 20547]
Length = 161
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPLNM 79
++D+G R+G+A DP A P + ++ + E ++GLP ++
Sbjct: 4 AVDVGLARVGVASGDPDGVLATPVETVAVAPGLTALDRVVQLVRQEERSTGVVVGLPRHL 63
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV-PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G E R + + R DERL+TV+A + + + V K++ ++D
Sbjct: 64 DGHESTSAVEARRWATALASRLGPTVRVWLVDERLSTVAASRGMREAGVRAKEQRTRIDQ 123
Query: 139 IAAALILQEVLD 150
AA ILQ LD
Sbjct: 124 AAAVEILQMSLD 135
>gi|331005506|ref|ZP_08328884.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC1989]
gi|330420698|gb|EGG94986.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC1989]
Length = 139
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D G + IG+A A + K ++ + + ++GLPLNM
Sbjct: 6 LAFDYGLQNIGVAYGQSLTGQATELAPINAKDGIPRWEDIAALLQEWKPTTVVVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ SE R F + + V F DERL+T A+Q + +DSI
Sbjct: 66 DDSESELCARARKFGR-RLHGRFSVDVEFMDERLSTFDAKQEAKARGHKGNYKQNPIDSI 124
Query: 140 AAALILQEVL 149
AA LIL+
Sbjct: 125 AARLILESWF 134
>gi|56476387|ref|YP_157976.1| Holliday junction resolvase-like protein [Aromatoleum aromaticum
EbN1]
gi|62900914|sp|Q5P6I6|RUVX_AZOSE RecName: Full=Putative Holliday junction resolvase
gi|56312430|emb|CAI07075.1| holliday junction resolvase [Aromatoleum aromaticum EbN1]
Length = 156
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G RIG+A+ + R A L + + + ++G+
Sbjct: 15 RGTLLAFDFGLARIGVAVGELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLVVGM 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-RKKRIQ 134
P +++G+ R F + + + +P + DERL++ +A L + + R Q
Sbjct: 75 PSHLDGTPHEMTARCRRFAN-QLHGRFGLPVLECDERLSSAAADAALAEAGTHDWRARKQ 133
Query: 135 KVDSIAAALILQEVLD 150
+D++AA +ILQ LD
Sbjct: 134 VLDAVAAQIILQHFLD 149
>gi|260891457|ref|ZP_05902720.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
gi|260858840|gb|EEX73340.1| putative Holliday junction resolvase [Leptotrichia hofstadii F0254]
Length = 138
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A DP A + R K + + E ++G+
Sbjct: 1 MKKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTKTNP-VERIKEILDDEGTKKIVVGM 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQ 134
P +++G++ +V FV + + +F DER TT A+ L + + K+R +
Sbjct: 60 PKSLDGTKKRQVEKVEEFVEELKKDIPNIQIIFVDERYTTTEAEHYLKNYSKKNGKERRK 119
Query: 135 KVDSIAAALILQEVLDRI 152
VD +AA++ILQ+ LD +
Sbjct: 120 VVDMVAASIILQKYLDTL 137
>gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma
citri]
Length = 139
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G+K +GLA S + Q A L ITTE + I+G P NM
Sbjct: 6 LAVDVGSKTLGLATSQGLIATGYGVYRFPENDFLQAAQYLAGLITTEQFSDIIVGYPKNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
N + GPR FV+ + + DERLTT A QI+++ N+SR+KR QK DS
Sbjct: 66 NNTIGPRALMVSDFVNLLKQLLDPTITIHLVDERLTTHQAHQIMLEANLSRQKRKQKKDS 125
Query: 139 IAAALILQEVL 149
+AA LIL+ L
Sbjct: 126 LAAQLILETYL 136
>gi|283458021|ref|YP_003362629.1| putative endonuclease involved in recombination [Rothia
mucilaginosa DY-18]
gi|283134044|dbj|BAI64809.1| predicted endonuclease involved in recombination [Rothia
mucilaginosa DY-18]
Length = 187
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+D+G R+G A+SDP A P L R K L I + +GLP
Sbjct: 10 MGVDVGNARVGTALSDPDGILATPLKTLRRDAKKNSDRRVLRKLIEVNEVVEVFVGLPKT 69
Query: 79 MNGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G + P R + + K ++ DERLTTVSA + L + VS +
Sbjct: 70 MRGGDSPSTEMAREYAQALRSELDAEEKTHINIWLVDERLTTVSAHRALHEAGVSSRDFK 129
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + +S G
Sbjct: 130 TMVDQVAAVNILQYSLDALKAGQSVAG 156
>gi|311113672|ref|YP_003984894.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
gi|310945166|gb|ADP41460.1| Holliday junction resolvase YqgF [Rothia dentocariosa ATCC 17931]
Length = 175
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALEL-LSFITTENIAAFIIGLPLN 78
+D+G R+G ++SDP A P L R + + + ++ +GLP
Sbjct: 1 MGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGLPKT 60
Query: 79 MNGSEGPRVHSTRAFV-----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
M G E R + + ++ DERLTTVSA + L + VS +
Sbjct: 61 MRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSRNFK 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
VD +AA ILQ LD + ++ G
Sbjct: 121 TMVDQVAAVNILQYSLDALKAGQAVAG 147
>gi|83814264|ref|YP_445196.1| hypothetical protein SRU_1064 [Salinibacter ruber DSM 13855]
gi|294507080|ref|YP_003571138.1| Holliday junction resolvase [Salinibacter ruber M8]
gi|126352257|sp|Q2S3N5|RUVX_SALRD RecName: Full=Putative Holliday junction resolvase
gi|83755658|gb|ABC43771.1| conserved hypothetical protein TIGR00250 [Salinibacter ruber DSM
13855]
gi|294343408|emb|CBH24186.1| Putative Holliday junction resolvase [Salinibacter ruber M8]
Length = 143
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ +L + ID+GTKR+G+A++DP R FA P + L + + IA
Sbjct: 1 MSTLSSEARVVGIDVGTKRVGVAVADPLRLFAQPHGTYA---PDEALDVLQALRDADGIA 57
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS- 128
++G PL G+ A+V + + V DER T+ A+ +L + VS
Sbjct: 58 RIVVGWPLTEEGTAEEATEMVEAYVERIREALGTVEVAREDERYTSEIAKDLLREAGVSQ 117
Query: 129 -RKKRIQKVDSIAAALILQEVLDR 151
+ +VD+ AAA+ILQ L+R
Sbjct: 118 PGRYDKGRVDAAAAAVILQGFLNR 141
>gi|78486169|ref|YP_392094.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
gi|146325621|sp|Q31EK3|RUVX_THICR RecName: Full=Putative Holliday junction resolvase
gi|78364455|gb|ABB42420.1| Holliday junction resolvase YqgF [Thiomicrospira crunogena XCL-2]
Length = 134
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ D G KRIG+AI R A P + K + +A ++
Sbjct: 4 PIEGVVIGFDFGLKRIGVAIGQTITRTATPEAIVASKDGKPDWEHISRLFEEWKPSAIVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ +NG E R F + + P + +E+L+++ A+Q + K
Sbjct: 64 GLPMRLNGEEQALTQPARKFGQ-RLSGRYQRPVYYIEEQLSSIEAEQ-------RKTKTD 115
Query: 134 QKVDSIAAALILQEVLDRI 152
Q +D AA +IL+ LD +
Sbjct: 116 QPMDDHAAQIILENWLDAL 134
>gi|149926767|ref|ZP_01915027.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105]
gi|149824696|gb|EDM83912.1| Holliday junction resolvase-like protein [Limnobacter sp. MED105]
Length = 144
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ D G KRIG+A + + A + + Q ++ S + ++
Sbjct: 8 PKPTQYLAFDFGLKRIGVAFGNSLTKTASGIAVVEAQNDEQRFAKIESLVKEWQPEGLVV 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+P +G++ F ++ + +P DER T+ + + + ++
Sbjct: 68 GVPRQPDGADNELTTRCERFAR-QLEGRFALPCAMVDERYTSAIIESCM--GGKAARENK 124
Query: 134 QKVDSIAAALILQEVL 149
+VD +A LIL++
Sbjct: 125 GRVDMGSACLILEQFF 140
>gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
Length = 165
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL---SFITTENIAAFIIGLP 76
+D+GT R+G+A++DP A P L R + A ++ ++ +GLP
Sbjct: 11 MGVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYVGLP 70
Query: 77 LNMNGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
++NG E R + ++ R DERL+TV+A + L+D VSR++
Sbjct: 71 RSLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSRREH 130
Query: 133 IQKVDSIAAALILQEVLDR 151
+ +VD AA LQ +D+
Sbjct: 131 MDRVDQAAAVTFLQTAVDQ 149
>gi|313837753|gb|EFS75467.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA2]
gi|314927366|gb|EFS91197.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL044PA1]
gi|314972690|gb|EFT16787.1| conserved hypothetical protein TIGR00250 [Propionibacterium acnes
HL037PA3]
Length = 160
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G RIG+A SD A P + + L + I+GLP+ +
Sbjct: 16 LAIDWGKARIGVAASDRDAILAFPVETVQTAN--RPMQRLAEIVAEYEPVEVIMGLPVAL 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
NG+E R + + +P + DER+TT +A + L D + +++ +D
Sbjct: 74 NGTEQLAARDIRDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQA 133
Query: 140 AAALILQEVLDRIS 153
AA IL++VL+++
Sbjct: 134 AAVAILEDVLEQVR 147
>gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
A2-165]
gi|257196899|gb|EEU95183.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
A2-165]
Length = 143
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGL 75
I ++D G R GLA+ DP P + K + I E A ++GL
Sbjct: 1 MKILAVDYGASRTGLAVCDPTEFLTTPITPQITLKARPKVAAEVCRIAQEQKAELIVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+EG R +R + +P WDER +T A IL ++ R
Sbjct: 61 PLNMDGTEGERAEKSRKLGK-TLQIWSGLPVRMWDERQSTCEAADILDEVGTFGAHRKAI 119
Query: 136 VDSIAAALILQEVLDRISFLESSKG 160
+DS++A +IL++ L ++ + G
Sbjct: 120 LDSVSATVILEDYL---AWRKEHPG 141
>gi|149376907|ref|ZP_01894662.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
gi|149358799|gb|EDM47268.1| Exodeoxyribonuclease III xth [Marinobacter algicola DG893]
Length = 137
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GT+RIG+A P L + ++ + ++GLPLNM
Sbjct: 1 MAFDFGTRRIGVASGQEMLGTGKPLTMLPARDGVPDWDQIGRLLKEWQPDRVLVGLPLNM 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ +E R F + + +V DERLT+ A+ ++ SR VD
Sbjct: 61 DDTENDMCARARKFGK-RLHGRFHVEVEMVDERLTSFEAKGDVMASGGSRDFGRDGVDDR 119
Query: 140 AAALILQEVL 149
AA LIL+
Sbjct: 120 AAVLILETWF 129
>gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17]
gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17]
Length = 156
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG R+GLA+SDP FAHP + ++++ I E + ++GLPL
Sbjct: 7 WLGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPL 66
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY------------VPFVFWDERLTTVSAQQILIDM 125
++G+EG R + N+ R DERLTTVSA + L++
Sbjct: 67 QLDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEA 126
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
+ ++ VD +A +ILQ LD
Sbjct: 127 QLGSRRHRPVVDQQSAVVILQTALD 151
>gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
gi|146325560|sp|Q3AUD8|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase
gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
Length = 140
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ Q I +ID GTKRIG+A SDP FA P + R +++ ++ + +
Sbjct: 1 MPLYQRIVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSKLLSPMVEAGE---VQLVV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PLN +G + F+ ++ +P +E ++ SA Q+L+ SRK+R
Sbjct: 58 VGYPLNRHGEQTAMTEVIDRFIESLRLEFPALPIETINEHCSSKSAMQLLVASGTSRKER 117
Query: 133 --IQKVDSIAAALILQEVLDR 151
++D+ AA L+L + L++
Sbjct: 118 KTKGRLDTAAACLLLSDYLEQ 138
>gi|220936072|ref|YP_002514971.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
gi|219997382|gb|ACL73984.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. HL-EbGR7]
Length = 163
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G +RIG+A+ P + + L ++ ++G PLN+
Sbjct: 21 LGLDYGGRRIGVAVGSRESGSGSPLGAVSNRDDGPDWAALDRWVREWRPDVLVVGQPLNL 80
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS----RKKRIQK 135
+G+ P + F + +R +P DER ++ A++ L + S RK +
Sbjct: 81 DGTPHPLAPRIQRFCEQLTERYT-LPVARVDERFSSFDAEERLREARASGRRGRKVQKGD 139
Query: 136 VDSIAAALILQEVL 149
+D+++AA++L
Sbjct: 140 IDALSAAILLDNWF 153
>gi|110597280|ref|ZP_01385568.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
13031]
gi|110341116|gb|EAT59584.1| Holliday junction resolvase YqgF [Chlorobium ferrooxidans DSM
13031]
Length = 143
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +ID GTKRIG+A SDP + FA P + R ++ E+ + ++ I IIG
Sbjct: 6 KKRVIAIDYGTKRIGVAKSDPLQLFAQPVGTVDRAGLSGMLEEM---LRSDEIGRVIIGY 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL NG F+ +++ + DE ++ A++IL SRK R
Sbjct: 63 PLGGNGETNAMTGVIDRFIEDLLVEFPQLMIERVDEHHSSKDARKILAASGKSRKVRQEK 122
Query: 134 QKVDSIAAALILQEVLDRIS 153
++DS AA ++L E L+ +
Sbjct: 123 GRIDSAAACVLLTEYLESRN 142
>gi|83643445|ref|YP_431880.1| endonuclease [Hahella chejuensis KCTC 2396]
gi|146325575|sp|Q2SPG9|RUVX_HAHCH RecName: Full=Putative Holliday junction resolvase
gi|83631488|gb|ABC27455.1| predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Hahella chejuensis KCTC 2396]
Length = 158
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D G KR G A+ A P + + + + + A I+G
Sbjct: 1 MATVVGFDFGLKRFGAAVGQSVSMTASPLKEIPAQDGIPRWEAIEALLEEWKPALVIVGE 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+GS R F + + + DERLT+ A+ ++ + R
Sbjct: 61 PLNMDGSVSEMALRARKFAR-RLHGRYNLRVEMADERLTSSEAKSMVRERYGQRDFGRFA 119
Query: 136 VDSIAAALILQEVLD 150
VDSIAA I++ L+
Sbjct: 120 VDSIAAVFIVESWLE 134
>gi|311064195|ref|YP_003970920.1| endonuclease involved in recombination [Bifidobacterium bifidum
PRL2010]
gi|313140070|ref|ZP_07802263.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|310866514|gb|ADP35883.1| Endonuclease involved in recombination [Bifidobacterium bifidum
PRL2010]
gi|313132580|gb|EFR50197.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 152
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG R+GLA+SDP FAHP + ++++ I E + ++GLPL
Sbjct: 3 WLGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY------------VPFVFWDERLTTVSAQQILIDM 125
++G+EG R + N+ R DERLTTVSA + L++
Sbjct: 63 QLDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLD 150
+ ++ VD +A +ILQ LD
Sbjct: 123 QLGSRRHRPVVDQQSAVVILQTALD 147
>gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037]
gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037]
Length = 157
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
ID+G R+G+A SDP A P + RK + +++ ++G
Sbjct: 5 RRGIRLGIDVGRARVGVARSDPDGVLAVPVETVPRK--GEPVRRIVALAAEYEAFEVLVG 62
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLN+ G + RA + + P DERL+TVSA +L S++
Sbjct: 63 LPLNLRGEDTASTADARA-FAQELAAALAAPVRLVDERLSTVSAHGVLRQAGRSQRDSRS 121
Query: 135 KVDSIAAALILQEVLD 150
VD +AA ++LQ+ LD
Sbjct: 122 IVDQVAAVVLLQQALD 137
>gi|207728127|ref|YP_002256521.1| putative holliday junction resolvase protein [Ralstonia
solanacearum MolK2]
gi|206591372|emb|CAQ56984.1| putative holliday junction resolvase protein [Ralstonia
solanacearum MolK2]
Length = 144
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + + D G KRIG+A+ + R A + + V ++ I F+
Sbjct: 12 VPLHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P++ G + P + + F + + + +P + DER ++++AQ D +
Sbjct: 72 VGMPVHPEGEDQPMIKLAKRFGN-QLHGRYGLPVTWVDERYSSIAAQ----DAGAT---- 122
Query: 133 IQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 DDVLDAEAARIILQQFFDE 141
>gi|308235923|ref|ZP_07666660.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
14018]
Length = 156
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
IDLG R+G A+SDP FAHP ++L+ I +++ +IGLPL
Sbjct: 3 WLGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRK------------VYVPFVFWDERLTTVSAQQILIDM 125
++G+EG R + N++ R V+ DERLTTV+A + L+D
Sbjct: 63 QLDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQLLDA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVL-DRISFLESS 158
+ S +K VD +A LILQ + D + +++
Sbjct: 123 DFSTRKHRPMVDQQSAVLILQSAIDDYKNDCKNN 156
>gi|239907946|ref|YP_002954687.1| putative holliday junction resolvase [Desulfovibrio magneticus
RS-1]
gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus
RS-1]
Length = 147
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +ID G R+GLA+ PG A P + + LL+ I +N +IG
Sbjct: 1 MEKILAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P G EG R F + R+ VP + DE +T A + L + +S ++ + K
Sbjct: 61 PARAGGDEGLTGRQVRNFAA-RLARRTAVPLAYADEAHSTEEAAERLREAGLSGRELLAK 119
Query: 136 VDSIAAALILQEVL 149
VD++AAA+IL+ L
Sbjct: 120 VDAMAAAVILERYL 133
>gi|311114976|ref|YP_003986197.1| putative Holliday junction resolvase [Gardnerella vaginalis ATCC
14019]
gi|310946470|gb|ADP39174.1| possible Holliday junction resolvase [Gardnerella vaginalis ATCC
14019]
Length = 166
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIG 74
IDLG R+G A+SDP FAHP ++L+ I +++ +IG
Sbjct: 10 KMVWLGIDLGDARVGTALSDPELTFAHPAGNVQSYGDSFNAIEDVLNIIEDNSVSRVVIG 69
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRK------------VYVPFVFWDERLTTVSAQQIL 122
LPL ++G+EG R + N++ R V+ DERLTTV+A + L
Sbjct: 70 LPLQLDGTEGKSAKKARRWGTNLVKRMKSLFDYGDWSLDFIPEVVWKDERLTTVTAHKQL 129
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVL-DRISFLESS 158
+D + S +K VD +A LILQ + D + +++
Sbjct: 130 LDADFSTRKHRPMVDQQSAVLILQSAIDDYKNDCKNN 166
>gi|300775195|ref|ZP_07085057.1| Holliday junction resolvase family protein [Chryseobacterium gleum
ATCC 35910]
gi|300505935|gb|EFK37071.1| Holliday junction resolvase family protein [Chryseobacterium gleum
ATCC 35910]
Length = 138
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R G+A +D + A + + + + + + + +IGL
Sbjct: 1 MGQILAIDYGKARCGIAATDDMQIIASGLETVENRSLMEFL---KKYFSENKVDEVVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P+++ G+ F+ + +DER T+ A + ++KKR
Sbjct: 58 PIDLKGNISEVETDILKFIEEFKKEFSDIAVHRFDERFTSKMASFFISQSGKNKKKRQEK 117
Query: 134 QKVDSIAAALILQEVLDRI 152
+D ++A +ILQ L++
Sbjct: 118 GLIDKVSATIILQNFLEQR 136
>gi|113868870|ref|YP_727359.1| Holliday junction resolvase-like protein [Ralstonia eutropha H16]
gi|123328961|sp|Q0K7N0|RUVX_RALEH RecName: Full=Putative Holliday junction resolvase
gi|113527646|emb|CAJ93991.1| predicted endonuclease involved in recombination [Ralstonia
eutropha H16]
Length = 141
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + + + D G K+IG+A+ + R A L V + + I N I
Sbjct: 9 LPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQEWNPVQLI 68
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P+N G E P + R F + ++ + +P + DER T+ +A R
Sbjct: 69 VGMPVNPEGGEQPSMKLARRFGN-QLNGRFGLPVEWVDERYTSRAASMA--------GAR 119
Query: 133 IQKVDSIAAALILQEVLDRIS 153
++D+ AA +ILQ+ D+
Sbjct: 120 RGELDAEAARIILQQYFDQFP 140
>gi|269123199|ref|YP_003305776.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
12112]
gi|268314525|gb|ACZ00899.1| Holliday junction resolvase YqgF [Streptobacillus moniliformis DSM
12112]
Length = 142
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A SD FA + R +T + I +E + A ++GL
Sbjct: 1 MKIYLGLDIGDVRIGVAKSDGLAMFASSYEVIDR-NITDPFERIKEIINSEKVIALVLGL 59
Query: 76 PLNMNGSEGPRVHSTRAFV-HNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
P +G +V FV + +P + DER TT A+ L + + K+R
Sbjct: 60 PKTKDGQNSIQVEKIERFVSELKLFIPENLPIHYIDERYTTKEAEYYLKNFSKKNGKERR 119
Query: 134 QKVDSIAAALILQEVLDR 151
+ VD +AA +ILQ LD+
Sbjct: 120 KVVDMVAAQIILQNFLDK 137
>gi|159029092|emb|CAO90081.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 162
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A ++R + + + NI + GLP M
Sbjct: 7 LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADLAQFEAIVKERNIKILVAGLPYTM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G G + + + + + +P + DER T++ A++ L +D
Sbjct: 67 AGELGFQAKQVQKYAQ-KLAITLDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125
Query: 140 AAALILQEVLDRISFLESS 158
AAA+ILQ+ LDR + +S
Sbjct: 126 AAAIILQQWLDRRRRVNNS 144
>gi|304313296|ref|YP_003812894.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
gi|301799029|emb|CBL47272.1| Putative holliday junction resolvase [gamma proteobacterium HdN1]
Length = 148
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
D GT IG+A+ A L + L++ I AFI+G+PL
Sbjct: 5 TFLGFDYGTTVIGVAVGQTVTGTASALALLPARDGVPDWLQVELLIQEWQPDAFIVGIPL 64
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKKRIQ 134
NM+G+E R F + + R P+ DERL+T A Q L ++ + Q
Sbjct: 65 NMDGTETILAPRARKFGNRLTGRFR-KPWFPVDERLSTREAWQALESQHQLHKRALRGNQ 123
Query: 135 KVDSIAAALILQEVLDR 151
+VD++AAALIL L+
Sbjct: 124 RVDAVAAALILGSWLES 140
>gi|300704910|ref|YP_003746513.1| holliday junction resolvase [Ralstonia solanacearum CFBP2957]
gi|299072574|emb|CBJ43924.1| Holliday junction resolvase [Ralstonia solanacearum CFBP2957]
Length = 144
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + + D G KRIG+A+ + R A + + V ++ I+ F+
Sbjct: 12 VPLHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLISEWQPVGFV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P++ G + P + + F + + + +P + DER ++++AQ D +
Sbjct: 72 VGMPVHPEGEDQPMIKLAKRFGN-QLRGRYGLPVTWVDERYSSIAAQ----DAGAT---- 122
Query: 133 IQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 DDVLDAEAARIILQQFFDE 141
>gi|283850501|ref|ZP_06367789.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
gi|283574072|gb|EFC22044.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
Length = 152
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R+GLA+SDP R A P + + ELL IT++ IAA ++G
Sbjct: 1 MPKILAIDYGQARVGLAVSDPEGRMAFPFATVAWQTRDALFRELLDVITSQGIAAIVVGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P G E R FV + R+ +P V DE +T A + L + +S +
Sbjct: 61 PARAGGDESLTGRQVRKFVA-RLSRRTDLPIVLVDEAHSTEEAAEQLREAGLSGPALSAR 119
Query: 136 VDSIAAALILQEVL 149
VD+ AAA+IL L
Sbjct: 120 VDAQAAAVILTRYL 133
>gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis
SK2]
gi|118597202|sp|Q0VTI2|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase
gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax
borkumensis SK2]
Length = 133
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT++IG+A + A P L K ++ + + A ++GLPLN
Sbjct: 2 ILAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS+ R F + + + DERL+T A++ KK +VDS
Sbjct: 62 MDGSDSESTVRARKFAN-RLHGRFGKKVWLIDERLSTREARER-----TGIKKADSRVDS 115
Query: 139 IAAALILQEVL 149
+AA +I +
Sbjct: 116 MAAVIIAEGFF 126
>gi|293363867|ref|ZP_06610603.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
gi|292552357|gb|EFF41131.1| RNAse YqgF [Mycoplasma alligatoris A21JP2]
Length = 139
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
++DLG++ G AISD A EL + I I+G
Sbjct: 1 MRKIALDLGSRTCGFAISDELGIIATGLDNFRFFEDNYQAVLNELTKYTKQYKIDTIILG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL +GS+ +F I+ + + V DE+ +T +A+ ILI + RKKR Q
Sbjct: 61 YPLKNDGSKSQSTLRVESFKKM-IEDNIDIKVVLVDEQYSTKNAENILIFSGMKRKKRKQ 119
Query: 135 KVDSIAAALILQEVL 149
D +AA LIL++ L
Sbjct: 120 FKDKLAAQLILEDFL 134
>gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum
ATCC 33209]
gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length = 169
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFII 73
+D+GT R+G+A+ DP A P + R K ++ + +
Sbjct: 8 RRGVRLGVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIYV 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYV----PFVFWDERLTTVSAQQILIDMNVSR 129
GLP + G+E RA + D V DERL++VSA Q L ++
Sbjct: 68 GLPQTLRGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGMAG 127
Query: 130 KKRIQKVDSIAAALILQEVLDRISFLESSKG 160
+++ + +D +AAA ILQ L+ +E S+G
Sbjct: 128 REQRKVIDQVAAAGILQHALE----MEKSRG 154
>gi|194337777|ref|YP_002019571.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
BU-1]
gi|194310254|gb|ACF44954.1| Holliday junction resolvase YqgF [Pelodictyon phaeoclathratiforme
BU-1]
Length = 145
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
L P + + +ID GTKRIG+A SDP FA P R +++ + I +++IA
Sbjct: 2 RLTPKKRVVAIDYGTKRIGMAQSDPLWLFAQPVGTFDRAGLSKAL---GTMIQSDDIALV 58
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
I+G PL+ NG + F+ + + + DE ++ A+ IL+ SRK
Sbjct: 59 IVGYPLSENGEKNAMTGVIDRFLETLHEEFPQLRIETLDEHHSSKDARSILVASGKSRKV 118
Query: 132 R--IQKVDSIAAALILQEVLDR 151
R +VDS AA ++L+E L+
Sbjct: 119 RQQKGRVDSAAACILLREYLEN 140
>gi|229827984|ref|ZP_04454053.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
14600]
gi|229792578|gb|EEP28692.1| hypothetical protein GCWU000342_00032 [Shuttleworthia satelles DSM
14600]
Length = 147
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAAFIIGL 75
I ++D G K +G+A +D A + RK K+ +T + I ++GL
Sbjct: 10 IMALDYGAKTVGVACTDSLGLTAQAVETVWRKRENKLRKTLARIDQIARDREIRLILVGL 69
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+NM+ SEG R R F + R + +DERL+T+ A +IL V KR +
Sbjct: 70 PVNMDDSEGERAGMARDFADQVAQRT-GIAVEMYDERLSTIEADEILGKSGVPVGKRKRH 128
Query: 136 VDSIAAALILQEVLDRIS 153
+D ++A LIL+ L+ +
Sbjct: 129 LDELSAQLILERYLEDLR 146
>gi|47097199|ref|ZP_00234763.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 1/2a F6854]
gi|47014413|gb|EAL05382.1| conserved hypothetical protein TIGR00250 [Listeria monocytogenes
str. 1/2a F6854]
Length = 117
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIG 74
I +D+G+K +G+AISDP A + + + + + + ++G
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
LP NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 61 LPKNMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 117
>gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 162
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
SL+ I +D+GT R+G++ DP P L+R + L + +
Sbjct: 2 SLRRGVRI-GVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
I+GLP ++ G EG R + + V DERL++ A L V +
Sbjct: 61 IVGLPRHLRGGEGVSAKGARKYARRLKTLIPSVRVALVDERLSSNQAHARLRASGVPEHE 120
Query: 132 RIQKVDSIAAALILQEVLD 150
+D +AA +IL++ L+
Sbjct: 121 HRSVIDQVAAQIILEQALE 139
>gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
Length = 133
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I ID G KRIGLA+ + A P L + + +L+S I +E + A ++GLP
Sbjct: 1 MKILGIDYGQKRIGLAM--ARQGMAFPFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+MNG E F + + R+ +P +E LT+ A+Q L + V +K + +
Sbjct: 59 LDMNGDETLTTRQVLNF-RDSLARRTELPIHLVNEALTSFDARQRLREAGVPERKHKEML 117
Query: 137 DSIAAALILQEVLDR 151
D +AA IL+ L+
Sbjct: 118 DQMAAVCILETYLEN 132
>gi|15617141|ref|NP_240354.1| hypothetical protein BU548 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681893|ref|YP_002468279.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219682448|ref|YP_002468832.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|11387309|sp|P57613|RUVX_BUCAI RecName: Full=Putative Holliday junction resolvase
gi|254767500|sp|B8D9X0|RUVX_BUCA5 RecName: Full=Putative Holliday junction resolvase
gi|254767501|sp|B8D872|RUVX_BUCAT RecName: Full=Putative Holliday junction resolvase
gi|25306219|pir||H84993 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10039206|dbj|BAB13240.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219622181|gb|ACL30337.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624736|gb|ACL30891.1| predicted Holliday junction resolvase (YqgF) [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311087433|gb|ADP67513.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
Length = 135
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K+IG+A+ + + P L + + + I ++GLPLN
Sbjct: 3 VIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+NG++ + + F + ++ K + DERLTTV A+ I+ N + + +K+ S
Sbjct: 63 INGTKQKITNKSEKFAN-LLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEKIHS 121
Query: 139 IAAALILQEVLDR 151
AA +IL+ ++
Sbjct: 122 CAAVIILESWFNQ 134
>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
Length = 542
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTE 66
L + +D+G K +GLAISDP A P L+RKK + + + +
Sbjct: 386 LKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAF 445
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILID 124
+++ ++G P + V + F+ + ++ V + +WDERL++ + + +L
Sbjct: 446 SVSGLVVGYPFGKLNNV-EDVVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKP 504
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+N+ + +D +AA +ILQE LD +
Sbjct: 505 LNLHPVQEKTMLDKLAAVVILQEYLDYAN 533
>gi|296120376|ref|YP_003628154.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
gi|296012716|gb|ADG65955.1| Holliday junction resolvase YqgF [Planctomyces limnophilus DSM
3776]
Length = 199
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 30/168 (17%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
++ + +D G KR+GLAIS + A P RK + + +A
Sbjct: 21 QAFPREGCLLGVDYGQKRVGLAISTFEQTLAMPMEIYQRKSESVDREWFKATCLDYRVAG 80
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--- 127
++GLPL+ +G E R F + R +P FWDER T+VSA+ ++ V
Sbjct: 81 LVVGLPLHTSGEESELSREVRQFGEW-LARCTNLPLRFWDERYTSVSAELLMWQDGVFPR 139
Query: 128 -----------------------SRKKRI---QKVDSIAAALILQEVL 149
+R K+ VD +AA +IL L
Sbjct: 140 SGNKPASGRTSKKSPGAGHSSPQNRAKKKTPVSPVDKLAAHMILTAFL 187
>gi|207744138|ref|YP_002260530.1| holliday junction resolvase protein [Ralstonia solanacearum
IPO1609]
gi|206595542|emb|CAQ62469.1| putative holliday junction resolvase protein [Ralstonia
solanacearum IPO1609]
Length = 144
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + D G KRIG+A+ + R A + + V ++ I F+
Sbjct: 12 VPLQGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFSQITRLINEWQPVGFV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P++ G + P + + F + + + +P + DER ++++AQ D +
Sbjct: 72 VGMPVHPEGEDQPMIKLAKRFGN-QLHGRYGLPVTWVDERYSSIAAQ----DAGAT---- 122
Query: 133 IQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 DDVLDAEAARIILQQFFDE 141
>gi|288817797|ref|YP_003432144.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|288787196|dbj|BAI68943.1| Holliday junction resolvase [Hydrogenobacter thermophilus TK-6]
gi|308751395|gb|ADO44878.1| Holliday junction resolvase YqgF [Hydrogenobacter thermophilus
TK-6]
Length = 133
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D G+KRIGLA+ D A P ++ ++ + I+ ++ I+GLP
Sbjct: 1 MKVLALDYGSKRIGLALGDTSLNIASPLGVFENREG--VVEKIRNLISEYRVSLLIVGLP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L G +G R FV + + + + WDER TT A +L ++ KR +
Sbjct: 59 LTPRGQKGQRAKEVEEFVKKLRESLPEEIELLMWDERYTTKEAYWLL--QDLPPTKRKKL 116
Query: 136 VDSIAAALILQEVLDRI 152
DS++A +IL+E L+ +
Sbjct: 117 KDSLSAYIILKEYLESL 133
>gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
Length = 147
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ L P Q I + D GT+++G+AI A+P P K +LL +
Sbjct: 1 MPELNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPN 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
FI+GLPLNM+ SE R F + + + DERLTT A++ L
Sbjct: 61 LFIVGLPLNMDDSESELSARARKFAR-RLRHQTNISTWMVDERLTTREAREELEFYQSKG 119
Query: 130 KKRIQKVDSIAAALILQEV 148
+ + DS AAAL++Q
Sbjct: 120 QAKRLSADSFAAALLIQSW 138
>gi|227488810|ref|ZP_03919126.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227542193|ref|ZP_03972242.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium glucuronolyticum ATCC 51866]
gi|227091232|gb|EEI26544.1| YqgF family crossover junction endodeoxyribonuclease
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227182022|gb|EEI62994.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Corynebacterium glucuronolyticum ATCC 51866]
Length = 189
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--------VTQTALELLSFITT 65
+ ++D+GT RIG+A SD R A P + R + ++ +
Sbjct: 16 PGDGRRLALDVGTVRIGIASSDRDARMAMPVETVPRSHKRVGSEIPDGEDIRRIMQIVRE 75
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQI 121
IIGLP ++ G+ V R + +P F DERLTTV A Q
Sbjct: 76 YEPVEVIIGLPRDLKGNGSASVVHARDIGQRLERVLAGAGQAIPVRFADERLTTVIATQA 135
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD-RISFLESSK 159
L ++ + + VD AA ILQ LD R S+L +S+
Sbjct: 136 LHASGLTERAGRKVVDQAAAVEILQTWLDARRSYLATSQ 174
>gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
Length = 147
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ L P Q I + D GT+++G+AI A+P P K +LL +
Sbjct: 1 MPELNPPQSIMAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPN 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
FI+GLPLNM+ SE R F + + + DERLTT A++ L
Sbjct: 61 LFIVGLPLNMDDSESELSARARKFAR-RLRHQTNITTWMVDERLTTREAREELEFYQSKG 119
Query: 130 KKRIQKVDSIAAALILQEV 148
+ + DS AAAL++Q
Sbjct: 120 QAKRLSADSFAAALLIQSW 138
>gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
Length = 144
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
S+ + + + D G KRIG+A+ + R A + + V ++ ++
Sbjct: 10 ASVPLHGTLLAFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPVG 69
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
F++G+P++ G + P + + F + + + +P + DER ++++AQ D +
Sbjct: 70 FVVGMPVHPEGEDQPMIKLAKRFGN-QLHGRYGLPVTWVDERYSSIAAQ----DAGAT-- 122
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 --DDVLDAEAARIILQQFFDE 141
>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana]
Length = 548
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTE 66
L + +D+G K +GLAISDP A P L+RKK + + + +
Sbjct: 392 LKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAF 451
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILID 124
+++ ++G P + V + F+ + ++ V + +WDERL++ + + +L
Sbjct: 452 SVSGLVVGYPFGKLNNV-EDVVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKP 510
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+N+ + +D +AA +ILQE LD +
Sbjct: 511 LNLHPVQEKTMLDKLAAVVILQEYLDYAN 539
>gi|145332817|ref|NP_001078274.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
acid binding / recombinase [Arabidopsis thaliana]
gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana]
gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 170
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTE 66
L + +D+G K +GLAISDP A P L+RKK + + + +
Sbjct: 14 LKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAF 73
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILID 124
+++ ++G P + V + F+ + ++ V + +WDERL++ + + +L
Sbjct: 74 SVSGLVVGYPFGKLNNV-EDVVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKP 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+N+ + +D +AA +ILQE LD +
Sbjct: 133 LNLHPVQEKTMLDKLAAVVILQEYLDYAN 161
>gi|332521218|ref|ZP_08397676.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
gi|332043311|gb|EGI79508.1| Holliday junction resolvase YqgF [Lacinutrix algicola 5H-3-7-4]
Length = 136
Score = 109 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R GLA++D + A + + + + T E++ F++G
Sbjct: 1 MAQILAIDYGKVRTGLAVTDDMQIIASGLTTVATTTLLDFLKD---YTTKESVELFLVGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P MN F+ + ++P DER T+ A Q +ID + +K+R
Sbjct: 58 PKQMNNQASESEALIAPFISRLRTFFPHIPIKRVDERFTSKMAVQTMIDSGLKKKQRQNK 117
Query: 134 QKVDSIAAALILQEVL 149
VD I+A +ILQ L
Sbjct: 118 ALVDEISATIILQSYL 133
>gi|255028975|ref|ZP_05300926.1| Holliday junction resolvase-like protein [Listeria monocytogenes
LO28]
Length = 116
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR +
Sbjct: 61 NMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKRKK 116
>gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
Length = 133
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT++IG+A + A P L K ++ + + A ++GLPLN
Sbjct: 2 ILAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLN 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS+ R F + + + DERL+T A++ +K +VDS
Sbjct: 62 MDGSDSESTARARKFAN-RLHGRFGKKVWLVDERLSTREARER-----TGIQKADPRVDS 115
Query: 139 IAAALILQEVL 149
+AA +I +
Sbjct: 116 MAAVVIAEGYF 126
>gi|194334951|ref|YP_002016811.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
271]
gi|226731637|sp|B4S5W7|RUVX_PROA2 RecName: Full=Putative Holliday junction resolvase
gi|194312769|gb|ACF47164.1| Holliday junction resolvase YqgF [Prosthecochloris aestuarii DSM
271]
Length = 142
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ I ++D GTKRIGLA +DP + FA P + + I +IG
Sbjct: 5 NRKRIIAVDYGTKRIGLAKTDPLQLFAQPVGTF---SEEALFRAIKEISGLDGIGRILIG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR-- 132
PLN +GS AF + + +P +E ++ SA QILI+ +SRKKR
Sbjct: 62 YPLNADGSHNRMTDIVDAFAARVHNEFPDIPLELVNEHGSSRSAGQILINSGLSRKKRHE 121
Query: 133 IQKVDSIAAALILQEVLDR 151
++DS +A ++LQ LD+
Sbjct: 122 KGRLDSASACVLLQAHLDK 140
>gi|25091669|sp|Q8K930|RUVX_BUCAP RecName: Full=Putative Holliday junction resolvase
gi|21623442|gb|AAM68071.1| hypothetical 15.2 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 137
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G K IG+A+ + + L K + + + + ++GLPLN
Sbjct: 3 VIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLPLN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
++G+ F ++ K + DERL+T A+ ++ N + + +K+ S
Sbjct: 63 IDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNGFKVLKKEKIHS 121
Query: 139 IAAALILQEVLDR 151
+AA +IL+ ++
Sbjct: 122 VAAVIILESWFNQ 134
>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTE 66
L + +D+G K +GLA+SD + A P L+RKK + + S I+
Sbjct: 69 LKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDL 128
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILID 124
++A FI+G P N P + + F+ ++ + V + +WDE T+ + + +L
Sbjct: 129 SLAGFIVGYPFNRQ-RSSPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKP 187
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+N+ + +D AA ILQ LD ++ +
Sbjct: 188 LNLHPVQSKTILDKFAAVGILQGYLDHVNRI 218
>gi|225426409|ref|XP_002269986.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 169
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTE 66
L + +D+G K +GLA+SD + A P L+RKK + + S I+
Sbjct: 14 LKMKATERGRLLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDL 73
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILID 124
++A FI+G P N P + + F+ ++ + V + +WDE T+ + + +L
Sbjct: 74 SLAGFIVGYPFNRQ-RSSPTAVNVKVFIDDLCKTGKLEGVRYTYWDECFTSKNVELLLKP 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISFL 155
+N+ + +D AA ILQ LD ++ +
Sbjct: 133 LNLHPVQSKTILDKFAAVGILQGYLDHVNRI 163
>gi|257471598|ref|ZP_05635597.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|311086269|gb|ADP66351.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086844|gb|ADP66925.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087924|gb|ADP68003.1| Holliday junction resolvase-like protein [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 146
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G K+IG+A+ + + P L + + + I ++GL
Sbjct: 11 KMIVIAFDFGIKKIGVAVGENITKKGRPLSVLNAQNGCPNWQLVKNLIQYWQPQFIVVGL 70
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN+NG++ + + F + ++ K + DERLTTV A+ I+ N + + +K
Sbjct: 71 PLNINGTKQKITNKSEKFAN-LLKYKFNIVVKMHDERLTTVEAKSIIFKKNGFKGLKEEK 129
Query: 136 VDSIAAALILQEVLDR 151
+ S AA +IL+ ++
Sbjct: 130 IHSCAAVIILESWFNQ 145
>gi|30410827|ref|NP_660860.2| hypothetical protein BUsg530 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 148
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 10 VKSLKPNQP--IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+K + +Q + + D G K IG+A+ + + L K + + + +
Sbjct: 3 IKYINRDQKMIVIAFDFGLKNIGVAVGENILKKGRALNKLSAKNGSPDWNNIKNLLKIWQ 62
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
++GLPLN++G+ F ++ K + DERL+T A+ ++ N
Sbjct: 63 PKFLVVGLPLNIDGTRQDITKKAEKFA-FLLKYKFNIFVYLHDERLSTKEAKSLIFKKNG 121
Query: 128 SRKKRIQKVDSIAAALILQEVLDR 151
+ + +K+ S+AA +IL+ ++
Sbjct: 122 FKVLKKEKIHSVAAVIILESWFNQ 145
>gi|218672210|ref|ZP_03521879.1| Holliday junction resolvase YqgF [Rhizobium etli GR56]
Length = 121
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 69/122 (56%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ + L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A L+
Sbjct: 1 MTVLTIEEMARILAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRVKFTIDAQALM 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
F TE +A F+IGLP+NM+GS GPRV +TRAFV NM ++K +PFV+WDERL+TV+A++
Sbjct: 61 DFAATEKVAGFVIGLPINMDGSAGPRVQATRAFVRNM-EQKTALPFVYWDERLSTVAAER 119
Query: 121 IL 122
L
Sbjct: 120 TL 121
>gi|166367778|ref|YP_001660051.1| Holliday junction resolvase-like protein [Microcystis aeruginosa
NIES-843]
gi|189046100|sp|B0JWX2|RUVX_MICAN RecName: Full=Putative Holliday junction resolvase
gi|166090151|dbj|BAG04859.1| putative holliday junction resolvase [Microcystis aeruginosa
NIES-843]
Length = 145
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G KR+G+A D A ++R + + + NI + GLP M
Sbjct: 7 LGLDIGKKRVGVAGCDGTGLIATGLTTIIRSSFVADIPQFEAIVKERNIKILVAGLPYTM 66
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G G + + + + + +P + DER T++ A++ L +D
Sbjct: 67 AGELGFQAQQVQKYAQ-KLAIALDLPLEYIDERCTSLEAEEFLKAKKQFSSWDKGAIDRE 125
Query: 140 AAALILQEVLDRIS 153
AAA+ILQ+ LDR
Sbjct: 126 AAAIILQQWLDRRR 139
>gi|297195517|ref|ZP_06912915.1| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
ATCC 25486]
gi|297152827|gb|EDY66041.2| Holliday junction resolvase YqgF [Streptomyces pristinaespiralis
ATCC 25486]
Length = 135
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 54/127 (42%)
Query: 34 SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93
DP A P + + V L + ++GLP +++G EGP R+F
Sbjct: 2 CDPDGLLATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVVGLPRSLSGREGPAAKKIRSF 61
Query: 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ VP DER+TTV+A Q L V KK +D AA +ILQ L+
Sbjct: 62 AQTLAQGVKPVPVRLVDERMTTVTATQGLRASGVKSKKGRSVIDQAAAVVILQNALESER 121
Query: 154 FLESSKG 160
++ G
Sbjct: 122 ASGNAPG 128
>gi|329904540|ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547934|gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
IMCC9480]
Length = 135
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G KRIG+A+ + R A + + + + A I+G+
Sbjct: 1 METVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGM 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + +G+E R F + + + +P V DER T+ V ++R ++
Sbjct: 61 PFHPDGAEHEMSVRCRRFAN-QLHGRYGLPTVLVDERYTSA----------VLGQQRGER 109
Query: 136 VDSIAAALILQEVLD 150
+D AAALILQ+ D
Sbjct: 110 IDDRAAALILQQYFD 124
>gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
Length = 145
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+G R+G+A + A P L + EL SFI E A +GLP +NG
Sbjct: 2 DVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNGK 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
EG R++ + + +P DERL++V+A + L VS ++ + VD +AA
Sbjct: 62 EGEAARMARSYARRLARKISPIPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQVAAQ 121
Query: 143 LILQEVLDRIS 153
IL++ ++ +
Sbjct: 122 QILEQAIEMSN 132
>gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
Length = 147
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G R+GLA++DP R P L + ELL+ I+ + + ++G
Sbjct: 1 MPRLLAIDYGQARVGLAVTDPEARVVFPLRTLAWETRDALFHELLAVISDQAVTRIVVGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ G EG R FV + R+ VP DE +T A + L + + K+ + +
Sbjct: 61 PMRAGGDEGLTGRQVRNFVS-RLTRRTTVPVELVDEAHSTEEAAERLREAGYAGKELLAR 119
Query: 136 VDSIAAALILQEVL 149
VD+ AAA+IL+ L
Sbjct: 120 VDAQAAAVILERYL 133
>gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
17982]
gi|153798500|gb|EDN80920.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
17982]
Length = 162
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 1/149 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
S++ I +D+GT R+G++ DP P L R L + + +
Sbjct: 2 SIRRGIRI-GVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
I+GLP ++ G EG R + + V DER+T+ A L + +
Sbjct: 61 IVGLPRHLRGGEGISAKGARKYARRLKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIE 120
Query: 132 RIQKVDSIAAALILQEVLDRISFLESSKG 160
+D +AA +IL++ L+ + G
Sbjct: 121 HRSVIDQVAAQIILEQALELERMGGRAPG 149
>gi|194290484|ref|YP_002006391.1| holliday junction resolvase-like protein [Cupriavidus taiwanensis
LMG 19424]
gi|254767511|sp|B3R605|RUVX_CUPTR RecName: Full=Putative Holliday junction resolvase
gi|193224319|emb|CAQ70330.1| Holliday junction resolvase [Cupriavidus taiwanensis LMG 19424]
Length = 141
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + + + D G K+IG+A+ + R A L V + + I N I
Sbjct: 9 LPRDGTVLAFDYGEKKIGVALGNFITREARALTILPNITVEGRFEAVAALIQAWNPVQLI 68
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P+N G E P + R F + ++ + +P + DER T+ +A R
Sbjct: 69 VGMPVNPEGGEQPSMKLARRFGN-QLNGRFGLPVEWVDERYTSRAASMA--------GAR 119
Query: 133 IQKVDSIAAALILQEVLDRIS 153
++D+ AA +ILQ+ D+
Sbjct: 120 RGELDAEAARIILQQYFDQFP 140
>gi|325068845|ref|ZP_08127518.1| Holliday junction resolvase YqgF [Actinomyces oris K20]
Length = 155
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D+G RIG+A D + P L R + E + + I+GLP +M
Sbjct: 3 IAFDVGQARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHM 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVP-FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G RA+ ++ R DERLTTVSA + L + + VD
Sbjct: 63 GGGSSSSTKDARAWARDLASRLPRRVCVRLVDERLTTVSAHRDLHAAGLKERSFRGIVDQ 122
Query: 139 IAAALILQEVL 149
AA +IL++ +
Sbjct: 123 AAAVVILEQAI 133
>gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
Length = 162
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 57/146 (39%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+D+GT R+G++ DP P L R L + + + I+G
Sbjct: 4 RRGIRIGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVG 63
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP ++ G EG R + + V DER+T+ A L + +
Sbjct: 64 LPRHLRGGEGISAKGARKYARRIKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIEHRS 123
Query: 135 KVDSIAAALILQEVLDRISFLESSKG 160
+D +AA +IL++ L+ + G
Sbjct: 124 VIDQVAAQIILEQALELERMGGRAPG 149
>gi|299067786|emb|CBJ38996.1| Holliday junction resolvase [Ralstonia solanacearum CMR15]
Length = 144
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + + D G KRIG+A+ + R A + + V ++ + F+
Sbjct: 12 VPVHGTLLAFDYGEKRIGVALGNSITRSARALEIIPNRSVEYRFTQITRLVNAWQPVGFV 71
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G+P++ G + P + + F + + + +P + DER ++++AQ D +
Sbjct: 72 VGMPVHPEGEDQPMIKLAKRFGN-QLHGRYGLPVTWVDERYSSIAAQ----DAGAT---- 122
Query: 133 IQKVDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 123 DDVLDAEAARIILQQFFDE 141
>gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group]
gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 178
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ- 54
M +L + L + + + + +D+G+K +GLA+SD R A P L R K
Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 55 -TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 112 RLTTVSAQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
T+ + +L + + + D AA ILQ LD ++
Sbjct: 121 NFTSKCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 163
>gi|171743065|ref|ZP_02918872.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
27678]
gi|283455925|ref|YP_003360489.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
gi|171278679|gb|EDT46340.1| hypothetical protein BIFDEN_02191 [Bifidobacterium dentium ATCC
27678]
gi|283102559|gb|ADB09665.1| Holliday junction resolvase [Bifidobacterium dentium Bd1]
Length = 158
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG R+GLA+SDP AHP V + E++ I E++ ++GLPL
Sbjct: 3 WLGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKV------------YVPFVFWDERLTTVSAQQILIDM 125
+NG G R + N+ R DERLTTV+A Q L D
Sbjct: 63 LLNGEAGKSAKKARRWAANLEKRMQAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
+ ++ VD +A +ILQ LDR
Sbjct: 123 QIGGRRHRPMVDQQSAVVILQTALDR 148
>gi|119025719|ref|YP_909564.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
ATCC 15703]
gi|154487460|ref|ZP_02028867.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
L2-32]
gi|167012696|sp|A1A199|RUVX_BIFAA RecName: Full=Putative Holliday junction resolvase
gi|118765303|dbj|BAF39482.1| putative Holliday junction resolvase [Bifidobacterium adolescentis
ATCC 15703]
gi|154083978|gb|EDN83023.1| hypothetical protein BIFADO_01313 [Bifidobacterium adolescentis
L2-32]
Length = 151
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
IDLG R+GLA+SDP AHP V + E++ I E++ +IGLPL
Sbjct: 3 WLGIDLGDARVGLALSDPELTLAHPIGNIQVYGDSFRALDEVIDVIGDESVDHVVIGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVY------------VPFVFWDERLTTVSAQQILIDM 125
+NG EG R + N+ R DERLTTV+A L D
Sbjct: 63 LLNGEEGKSAKKARRWSVNLEKRLHAAVEDESYSVTRVPTIELVDERLTTVTAHHQLFDA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
+ +K VD +A +ILQ LDR
Sbjct: 123 RIGGRKHRPMVDQQSAVVILQTALDR 148
>gi|330815719|ref|YP_004359424.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3]
gi|327368112|gb|AEA59468.1| Holliday junction resolvase YqgF [Burkholderia gladioli BSR3]
Length = 147
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 4/143 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A + + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNTLTRTARALVIVSNLNREYRFEAVGALIAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++ +G+ + F + ++ + +P + DER ++V A+ L I
Sbjct: 67 LPMHPDGTPHEMTQQAKRFGN-QLNGRFNLPVNWIDERYSSVEARAGLRARGAKADAAID 125
Query: 135 KVDSIAAALILQEVLDRISFLES 157
+ +ILQ LD++
Sbjct: 126 AEAAR---VILQHYLDQLPDHHE 145
>gi|269468190|gb|EEZ79886.1| Holliday junction resolvase YqgF [uncultured SUP05 cluster
bacterium]
Length = 140
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
Q D+GTKR G+AI++ A + K + I+ ++ FI+GL
Sbjct: 3 QTYLGFDVGTKRTGVAIANSLTSQATGIDVVKNHKDGSSNWEGFDQIISAHSVDLFIVGL 62
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N +GSE ++F ++++ + DE L++ A+ L +
Sbjct: 63 PFNKDGSEQEMTFIAKSFAR-KLEKRYQIKTELIDEYLSSNEAKNQLKYNHYHPNAERSD 121
Query: 136 VDSIAAALILQEVLDRI 152
VD +A LILQ L+
Sbjct: 122 VDKRSAQLILQTWLNER 138
>gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7]
gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7]
Length = 137
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + + D GTK+IG+AI + R A P L Q + + ++G
Sbjct: 5 PDSTLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL +GSE R F + + + V V DER +++ AQQ+L
Sbjct: 65 LPLATDGSEQYASLRCRRFAN-QLHGRFGVETVLVDERGSSMEAQQML--------GNNT 115
Query: 135 KVDSIAAALILQEVLDRIS 153
D++AAA+ILQ LD ++
Sbjct: 116 DDDAVAAAIILQRYLDGLA 134
>gi|306822870|ref|ZP_07456246.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
27679]
gi|309801316|ref|ZP_07695445.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
JCVIHMP022]
gi|304553502|gb|EFM41413.1| possible Holliday junction resolvase [Bifidobacterium dentium ATCC
27679]
gi|308222205|gb|EFO78488.1| RNAse H domain protein, YqgF family [Bifidobacterium dentium
JCVIHMP022]
Length = 158
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG R+GLA+SDP AHP V + E++ I E++ ++GLPL
Sbjct: 3 WLGVDLGDARVGLALSDPELTLAHPAGNIQVYGDSFRALDEVIDVIEDESVDHVVVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKV------------YVPFVFWDERLTTVSAQQILIDM 125
+NG G R + N+ R DERLTTV+A Q L D
Sbjct: 63 LLNGEAGKSAKKARRWAANLEKRMRAAAQDESEPLNVIPTIELVDERLTTVTAHQQLFDA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
+ ++ VD +A +ILQ LDR
Sbjct: 123 QIGGRRHRPMVDQQSAVVILQTALDR 148
>gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 147
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ ++ +Q I + D GT+++G+AI A+P P + K +LL +
Sbjct: 1 MPDIQTSQSIMAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPN 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++GLPLNM+ SE R F + + + DERLTT A++ L
Sbjct: 61 LFLVGLPLNMDDSESELSARARKFAR-RLRHQTNIQTWMVDERLTTREAREELESYQSKG 119
Query: 130 KKRIQKVDSIAAALILQEV 148
+ + DS AAAL++Q
Sbjct: 120 QAKRLSADSFAAALLIQSW 138
>gi|219362555|ref|NP_001136992.1| hypothetical protein LOC100217155 [Zea mays]
gi|194697900|gb|ACF83034.1| unknown [Zea mays]
Length = 174
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ 54
M +L E+L + + + +D+G+K +G+AISD R A P L R K
Sbjct: 1 MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNI 60
Query: 55 TAL--ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI-DRKVYVPFVFWDE 111
+ + + ++ +IA F++G P + G + +P+ +WDE
Sbjct: 61 NLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQVSLAGELCKTGKLDDLPYAYWDE 120
Query: 112 RLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153
T+ + +L +N+ D AA ILQ LD ++
Sbjct: 121 NFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 163
>gi|213018933|ref|ZP_03334741.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|212995884|gb|EEB56524.1| putative holliday junction resolvase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 136
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G K+IG+A SD + A R+ +++ L + + +IGLP +
Sbjct: 1 MCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTI 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ E F + +I + V DE L+T A L +S K + D I
Sbjct: 61 DEQETEWCKVIIQFANKIIKKCK-VHIYLQDESLSTSLATHALKITGISITKSKKIDDKI 119
Query: 140 AAALILQEVLDRISFLE 156
AA +ILQ LD+I+ ++
Sbjct: 120 AACIILQRTLDKINAIK 136
>gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
Length = 142
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFIIGLP 76
ID G R GLA+SDP R A P L L + IT E A ++GLP
Sbjct: 1 MGIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAALAARITAEEAEAVVMGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G++ R V + R+V +P + E L++ A L D ++ +KR +
Sbjct: 61 LLDDGTDSLTTRQVRN-VTERLKRRVDLPVFYMPELLSSEEAWSDLRDAGLTARKRKAVL 119
Query: 137 DSIAAALILQEVL 149
D AA IL L
Sbjct: 120 DQQAAVRILASFL 132
>gi|300175399|emb|CBK20710.2| Holliday junction resolvase YqgF [Blastocystis hominis]
Length = 167
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 1 MSILLIEDLVKSLKPNQ----PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA 56
M++L ++ L + +D+GT +G+A+SDP A P+ L+R +
Sbjct: 1 MAVLTVKQLQSLYSKVAHIRPRLLGLDVGTTFVGVALSDPTLTLALPQGTLLRTDCLRPF 60
Query: 57 LEL--LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK-VYVPFVFWDERL 113
+ + AF++GLPL +G E + + F+H + + +P VF DE
Sbjct: 61 KSNPLIKLVQQYRTFAFVVGLPLLESGEESIQCEDVKLFIHEFWNHTEMPMPVVFEDEWG 120
Query: 114 TTVSAQ---QILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+T A + + +R R + D AAA+ILQ LD
Sbjct: 121 STQMAMDDYRYQKKRDWNRGLRKK--DENAAAIILQSFLDS 159
>gi|85057698|ref|YP_456614.1| Holliday junction resolvase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|146325552|sp|Q2NJ58|RUVX_AYWBP RecName: Full=Putative Holliday junction resolvase
gi|84789803|gb|ABC65535.1| Holliday junction resolvase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 151
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG K +G+A+S G + + K Q L I+ I I+G P +
Sbjct: 10 LGLDLGEKTLGIALSQTGIIAQNLKTIFFDTHKYDQLIAPLQKIISQYQIKKIILGYPKH 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN G + + F + ++ V + WDERL+TV A QIL N + K +Q D
Sbjct: 70 MNNDIGIKAKISNYFKKTLENKFGQVKVILWDERLSTVQAIQILKTNNKKKGKILQMKDE 129
Query: 139 IAAALILQEVLDRISFLESSK 159
IAA++ILQ LD I + +
Sbjct: 130 IAASIILQNYLDYIKLHPNKE 150
>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis]
gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis]
Length = 168
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 2 SILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--EL 59
I L DL+KS K N + +D+G K +GLAISD + A P L+RKK + +
Sbjct: 6 PIALFNDLMKS-KSNGRLLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDF 64
Query: 60 LSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH--NMIDRKVYVPFVFWDERLTTVS 117
S I+ ++A F++G P + P + F+ I + + + FWDE T+ +
Sbjct: 65 QSLISELSLAGFVVGYPFDRQ-RSTPDALHVKLFIDDLRKIGKLEGLKYTFWDECFTSKN 123
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ ++ +++ + +D AA ILQ LD ++
Sbjct: 124 VELLVQPLDLHPVEAKTIMDKFAAVGILQGYLDYVN 159
>gi|182415341|ref|YP_001820407.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
gi|226731633|sp|B1ZVE0|RUVX_OPITP RecName: Full=Putative Holliday junction resolvase
gi|177842555|gb|ACB76807.1| Holliday junction resolvase YqgF [Opitutus terrae PB90-1]
Length = 145
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID GT+RIGLA D A P P LV + LL+ + ++G P
Sbjct: 1 MRCLGIDYGTRRIGLAYGDELG-VATPLPALVEADPAKRWQSLLATARQRRVTDLVVGHP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+ + GP+ A + V DERLT+ A+ + + +
Sbjct: 60 LNMDDTAGPKAKEAEAVAARLRTELAGVDVHLVDERLTSYEAEATISKTQRRAVRASGVI 119
Query: 137 DSIAAALILQEVLDRI 152
DS AA LILQ+ LD+
Sbjct: 120 DSRAATLILQDFLDQR 135
>gi|254445960|ref|ZP_05059436.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
bacterium DG1235]
gi|198260268|gb|EDY84576.1| conserved hypothetical protein TIGR00250 [Verrucomicrobiae
bacterium DG1235]
Length = 149
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+D G +R+G+A D A P +V+ + L+ F+ G P
Sbjct: 1 MRCIGVDYGERRVGVAFGDDIG-VATPLQAIVKATEEERIQALVDLARERRATDFVFGYP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
NMNGS G + AF+ ++ + + +P DERLT+V A + +R K+
Sbjct: 60 YNMNGSVGFKAKEVDAFIDKLL-KAIDLPVHRLDERLTSVEASKAFPKKRDDELRRSGKI 118
Query: 137 DSIAAALILQEVLDRISFLES 157
DS+AA+LILQ+ L++ L
Sbjct: 119 DSVAASLILQDYLNQTIELPE 139
>gi|46446457|ref|YP_007822.1| hypothetical protein pc0823 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400098|emb|CAF23547.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 134
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 28 RIGLAISDPGRRFAHPRPFLVRKKVTQTA-------LELLSFITTENIAAFIIGLPLNMN 80
RIGLA SD + A P + +K ++ + L I +IGLPL M+
Sbjct: 3 RIGLAQSDERKIIAMPLITVHTEKKSEQTVIKLLETISQLCETQKCEIEEIVIGLPLMMS 62
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G G + F ++ + +P WDERLTTV A++ L + ++RKKR + VD ++
Sbjct: 63 GRTGFLADEVKHFAQ-LLQQLTPIPIRLWDERLTTVQAERSLRESQLTRKKRSKVVDIVS 121
Query: 141 AALILQEVLDRI 152
A++ILQ LD
Sbjct: 122 ASIILQSYLDSR 133
>gi|17545395|ref|NP_518797.1| Holliday junction resolvase-like protein [Ralstonia solanacearum
GMI1000]
gi|32130046|sp|Q8Y1L4|RUVX_RALSO RecName: Full=Putative Holliday junction resolvase
gi|17427687|emb|CAD14206.1| putative holliday junction resolvase protein [Ralstonia
solanacearum GMI1000]
Length = 144
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + + D G KRIG+A+ + R A + + V ++ + F++G+
Sbjct: 15 HGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGM 74
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P++ G + P + + F + + + +P + DER ++++AQ D +
Sbjct: 75 PVHPEGEDQPMIKLAKRFGN-QLHGRYGLPVTWVDERYSSIAAQ----DAGAT----DDV 125
Query: 136 VDSIAAALILQEVLDR 151
+D+ AA +ILQ+ D
Sbjct: 126 LDAEAARIILQQFFDE 141
>gi|152002513|dbj|BAF73537.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
Length = 151
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG K +G+A+S G + + K + L I+ I ++G P +
Sbjct: 10 LGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLITPLQEIISQYQIKTIVLGYPKH 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q D
Sbjct: 70 MNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKDE 129
Query: 139 IAAALILQEVLDRISFLESSK 159
IAA +ILQ LD I + +
Sbjct: 130 IAATIILQNYLDYIKLHPNKE 150
>gi|23465455|ref|NP_696058.1| endonuclease [Bifidobacterium longum NCC2705]
gi|322688961|ref|YP_004208695.1| endonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|322690930|ref|YP_004220500.1| endonuclease [Bifidobacterium longum subsp. longum JCM 1217]
gi|23326107|gb|AAN24694.1| possible endonuclease [Bifidobacterium longum NCC2705]
gi|320455786|dbj|BAJ66408.1| putative endonuclease [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460297|dbj|BAJ70917.1| putative endonuclease [Bifidobacterium longum subsp. infantis 157F]
Length = 145
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 25 GTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
G R+GLA+SDP FAHP V E+L+ I E++ I+GLPL M+G+E
Sbjct: 2 GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61
Query: 84 GPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
G R + N+ R DERLTTVSA + L + + + K
Sbjct: 62 GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121
Query: 132 RIQKVDSIAAALILQEVLDRISF 154
VD +A +ILQ LDR
Sbjct: 122 HRPVVDQQSAVVILQTALDRTRE 144
>gi|320458617|dbj|BAJ69238.1| putative endonuclease [Bifidobacterium longum subsp. infantis ATCC
15697]
Length = 144
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 25 GTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
G R+GLA+SDP FAHP V E+L+ I E++ I+GLPL M+G+E
Sbjct: 2 GNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGTE 61
Query: 84 GPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
G R + N+ R DERLTTVSA + L + + + K
Sbjct: 62 GKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASNK 121
Query: 132 RIQKVDSIAAALILQEVLDRISF 154
VD +A +ILQ LDR
Sbjct: 122 HRPVVDQQSAVVILQTALDRTRE 144
>gi|255026681|ref|ZP_05298667.1| Holliday junction resolvase-like protein [Listeria monocytogenes
FSL J2-003]
Length = 114
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA--LELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + + + + + + ++GLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDRVKELVLEYEVEKVVVGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
NMN + GPR S++ + +++ ++ +P V WDERLTT +A++ LI+ +VSRKKR
Sbjct: 61 NMNNTIGPRAESSKIYAE-VLEARIGLPVVLWDERLTTSAAERTLIEADVSRKKR 114
>gi|262370094|ref|ZP_06063421.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315133|gb|EEY96173.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 147
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ L Q I + D GT+++G+A+ A P K EL I
Sbjct: 1 MPDLNTPQMIMAFDFGTQKMGMAVGQALIESATPLALFPMKDGIPNWDELHKIIKQYQPN 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++GLPLNM+ SE R F + + + DERL+T +A+ L +
Sbjct: 61 VFLVGLPLNMDDSESELSARARKFAR-RLRHQTNIETWMVDERLSTRAARDELSHYHAQG 119
Query: 130 KKRIQKVDSIAAALILQEV 148
+ + DS+AA L ++
Sbjct: 120 RGKKVSADSLAATLFIESW 138
>gi|119713535|gb|ABL97588.1| hypothetical protein MBMO_EB0-35D03.0051 [uncultured marine
bacterium EB0_35D03]
Length = 142
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFL-VRKKVTQTALELLSFITTENIAAFIIGL 75
+ D+GTKR G+AI++ A + K + +L I FI+G+
Sbjct: 4 KTYLGFDVGTKRTGIAIANSLTSHASGIETILHNKDGSTNWAQLEKTINKHQPDKFIVGM 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+ + E R+F ++++ +F DE L++ A++ L +
Sbjct: 64 PLDKDNKEQEMTFIARSFGR-KLEKRFDKEVIFIDEYLSSSEAKKQLKWHYAHKNADRGD 122
Query: 136 VDSIAAALILQEVLDRISF 154
VD +A LILQ L+ ++
Sbjct: 123 VDKRSAKLILQTWLNETTY 141
>gi|320161632|ref|YP_004174857.1| putative holliday junction resolvase [Anaerolinea thermophila
UNI-1]
gi|319995486|dbj|BAJ64257.1| putative holliday junction resolvase [Anaerolinea thermophila
UNI-1]
Length = 152
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ++D G RIGLAISDP A + A + T + + I+G
Sbjct: 2 KGRILAVDPGDVRIGLAISDPTGTIARALGVIHHVARAIDAATIAQIATEQGVVRIIVGQ 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ +G P+ + I ++ +P WDE +T AQ M V RK+R
Sbjct: 62 ALDDHGLPTPQGRKSARLAE-AIQQQTSIPVELWDESGSTNKAQDTRRIMGVKRKQRQGH 120
Query: 136 VDSIAAALILQEVLD 150
+D +AA +ILQ+ L+
Sbjct: 121 LDDLAAVIILQDYLE 135
>gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii SL3/3]
Length = 143
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGL 75
I ++D G R GLA D + K + + E A I IGL
Sbjct: 1 MKILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+EG R +R + + +P WDER TT +A +L + +R +
Sbjct: 61 PLNMDGTEGERAAKSRKLAKTV-ELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEI 119
Query: 136 VDSIAAALILQEVL 149
+DS++A +IL++ L
Sbjct: 120 LDSVSATVILEDYL 133
>gi|312135027|ref|YP_004002365.1| holliday junction resolvase yqgf [Caldicellulosiruptor owensensis
OL]
gi|311775078|gb|ADQ04565.1| Holliday junction resolvase YqgF [Caldicellulosiruptor owensensis
OL]
Length = 138
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G R+G+AISDP + A P + K EL +I +IG P
Sbjct: 1 MRILCLDIGNSRVGVAISDPLKITAQPVMTIELKN-KDLFDELDKIFQRYSIEKVVIGYP 59
Query: 77 LNM-NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ + + I + V V WDER +T + ++++ + ++ K++ +
Sbjct: 60 LSKLHPDLKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKKV 118
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 119 IDKVAAVYILQGYLDFYN 136
>gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
M21/2]
gi|158443721|gb|EDP20726.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
M21/2]
Length = 143
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IGL 75
I ++D G R GLA D + K + + E A I IGL
Sbjct: 1 MKILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARNKVAARVCEVAKEIEAEMILIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+EG R +R + + +P WDER TT +A +L + +R +
Sbjct: 61 PLNMDGTEGERAAKSRKLAKTV-ELWSGLPVRMWDERQTTCAAADLLDESGTYGSRRKEI 119
Query: 136 VDSIAAALILQEVL 149
+DS++A +IL++ L
Sbjct: 120 LDSVSATVILEDYL 133
>gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
Length = 142
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G KR GLA+SD + FA + K + EL ++ E I +IG
Sbjct: 1 MSKILAIDFGLKRTGLALSDESKIFAFGLQTIDSKTL---MDELKKLVSKEKITEIVIGE 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P ++ S+ + R + V DER T+ A ++ + +K R
Sbjct: 58 PKRLDTSDSHITQNVRLLKEAVQKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQK 117
Query: 134 QKVDSIAAALILQEVL 149
+D+++A +ILQ+ L
Sbjct: 118 GLIDTVSATIILQDYL 133
>gi|193216584|ref|YP_001999826.1| putative Holliday junction resolvase [Mycoplasma arthritidis
158L3-1]
gi|226731628|sp|B3PM70|RUVX_MYCA5 RecName: Full=Putative Holliday junction resolvase
gi|193001907|gb|ACF07122.1| putative Holliday junction resolvase [Mycoplasma arthritidis
158L3-1]
Length = 147
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-ALELLSFITTE-----NIAA 70
+DLG K G AISD + A ++ + + + E +
Sbjct: 1 MRKLCLDLGKKTCGFAISDVNQTIAIGLENFFYEEYHFYEVINRIKYYLEESEFQGQVDE 60
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLPL M+ SE + F ++ + + +P DER +T +A+ IL + K
Sbjct: 61 IILGLPLRMDLSESKTTKMVKKFA-TVLAKNITLPIRLQDERQSTKNAEAILSQGGYNAK 119
Query: 131 KRIQKVDSIAAALILQEVLDRISFLESS 158
++ K DS+AA LIL++ L+R +S+
Sbjct: 120 QKKLKKDSLAAQLILEDYLERQHHEKSN 147
>gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Prosthecochloris vibrioformis DSM
265]
gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM
265]
Length = 142
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + ID GTKRIGLA++DP R FA P R+ + E + IA ++G
Sbjct: 3 KKRLVGIDYGTKRIGLAVADPLRIFARPVGTFSREGLQGALEE---IERQDGIATLVVGY 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
PL+ G F+ + + V DE ++ A IL SRK R
Sbjct: 60 PLSSGGETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKK 119
Query: 134 QKVDSIAAALILQEVLDRIS 153
++D+ AA ++L L+ S
Sbjct: 120 GRLDTAAACVLLTRYLEESS 139
>gi|325955520|ref|YP_004239180.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
gi|323438138|gb|ADX68602.1| Holliday junction resolvase [Weeksella virosa DSM 16922]
Length = 132
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G KR G+A++D + A P L K++ ++ E ++ +IGLP+
Sbjct: 1 MALDFGEKRTGIAVTDELQIIATPVDTLETKELFNFFE---TYFAKEKVSELVIGLPMKF 57
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKVD 137
+G P + + F+ +P +E T+ A Q I + +K R +D
Sbjct: 58 SGEMNPIENEIQKFILKFKQSYPQIPIYRENEMFTSKMALQTQISGGMKKKDRQSKGSLD 117
Query: 138 SIAAALILQEVL 149
I+A +ILQ L
Sbjct: 118 KISATIILQSFL 129
>gi|187479481|ref|YP_787506.1| Holliday junction resolvase-like protein [Bordetella avium 197N]
gi|146325554|sp|Q2KUT2|RUVX_BORA1 RecName: Full=Putative Holliday junction resolvase
gi|115424068|emb|CAJ50621.1| putative holliday junction resolvase [Bordetella avium 197N]
Length = 131
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + A P + ++ + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTCHARPLEIIFSERRDERFGRIQALLEAWRPQRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L +G + P R F + + + V DER +++ AQ+ L
Sbjct: 62 LALATDGGDQPATLRCRRFAN-QLHGRFGVTVELVDERGSSMEAQEKLGSH--------A 112
Query: 135 KVDSIAAALILQEVLDRIS 153
D++AAA+ILQ LDR++
Sbjct: 113 PDDAMAAAIILQRYLDRLA 131
>gi|39938790|ref|NP_950556.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
gi|62900989|sp|Q6YQR9|RUVX_ONYPE RecName: Full=Putative Holliday junction resolvase
gi|39721899|dbj|BAD04389.1| Hollyday junction resolvase [Onion yellows phytoplasma OY-M]
Length = 151
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG K +G+A+S G + + K + L I I ++G P +
Sbjct: 10 LGLDLGEKTLGIALSQTGIIAQNLKTIFFATHKYDRLIAPLQEIIFQYQIKTIVLGYPKH 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN G + + F + ++ V + WDERL+TV A Q+L N + K +Q D
Sbjct: 70 MNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGKILQMKDE 129
Query: 139 IAAALILQEVLDRI 152
IAA +ILQ LD I
Sbjct: 130 IAATIILQNYLDYI 143
>gi|28199161|ref|NP_779475.1| Holliday junction resolvase-like protein [Xylella fastidiosa
Temecula1]
gi|182681892|ref|YP_001830052.1| Holliday junction resolvase-like protein [Xylella fastidiosa M23]
gi|54039590|sp|P67497|RUVX_XYLFT RecName: Full=Putative Holliday junction resolvase
gi|54042294|sp|P67496|RUVX_XYLFA RecName: Full=Putative Holliday junction resolvase
gi|226695318|sp|B2I5Y9|RUVX_XYLF2 RecName: Full=Putative Holliday junction resolvase
gi|28057259|gb|AAO29124.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182632002|gb|ACB92778.1| Holliday junction resolvase YqgF [Xylella fastidiosa M23]
gi|307578146|gb|ADN62115.1| Holliday junction resolvase-like protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 155
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSALGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
PL + G + P AF + + +P V DER ++V A R++
Sbjct: 69 DPLTLEGHDQPIRKQAHAFA-CQLRERYRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|308177508|ref|YP_003916914.1| Holliday junction resolvase [Arthrobacter arilaitensis Re117]
gi|307744971|emb|CBT75943.1| putative Holliday junction resolvase [Arthrobacter arilaitensis
Re117]
Length = 157
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+D+G R+G+A SDP A P L R K LL I + +G P +
Sbjct: 6 LGVDVGLARVGVAASDPSGILATPVMTLRRDVKKNSDRRMLLRIIADRGVTEVFVGEPKS 65
Query: 79 MNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ G+ R + + + DERL+TV+A + L + +
Sbjct: 66 LAGNSTESTKMARDYAIALAEEAASANIELEVFMVDERLSTVNAHRALHASGKKMEDHRK 125
Query: 135 KVDSIAAALILQEVLD 150
VD +AA ILQ+VL+
Sbjct: 126 VVDQVAATEILQQVLE 141
>gi|261855953|ref|YP_003263236.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2]
gi|261836422|gb|ACX96189.1| Holliday junction resolvase YqgF [Halothiobacillus neapolitanus c2]
Length = 165
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGL 75
+ D G RIG+A+ + A P R + + ++G
Sbjct: 8 GTWLAFDYGAWRIGVAVGEQMLGSARPLTTLHHRNAHQIQWDAIGQLLDEWRPVGLVLGW 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL--IDMNVSRKKRI 133
PL +G P R F +D + +P + DERL++ AQ +L KK
Sbjct: 68 PLMDSGETYPVAEFIRRFGR-RLDGRFNLPVRYVDERLSSEHAQMLLTTRHGKDKVKKSP 126
Query: 134 QKVDSIAAALILQEVL 149
+D+ AAA+IL+
Sbjct: 127 SMIDAQAAAIILETFF 142
>gi|32490913|ref|NP_871167.1| hypothetical protein WGLp164 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|32130024|sp|Q8D337|RUVX_WIGBR RecName: Full=Putative Holliday junction resolvase
gi|25166119|dbj|BAC24310.1| yqgF [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 144
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S D GTK IG+AI + P + K ++ + I I+GLPLN
Sbjct: 8 LISFDFGTKNIGVAIGQMKTNTSKPLESVSYVKGVPNWGKINNIILLWEPKYIIVGLPLN 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+GS + F + ++ +P + DERLTT+ A+ +L + + + +DS
Sbjct: 68 MDGSYQTSTIKAKKFAKQLRNKFF-MPVMMHDERLTTIEAKSVLFKKYGYKGLKKKLIDS 126
Query: 139 IAAALILQEVLDRISFLE 156
+A +IL ++ I F +
Sbjct: 127 ESAVIILDSWMNSIYFKK 144
>gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 191
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 17 QPIASIDLGTKRIGLAISDP---GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
I ++D G R GLA D P+ L + + A + +I
Sbjct: 49 MKILAVDYGDSRTGLATCDRTEFLTTAITPQITLKARN--KVAARVCEVAKEIGAELIVI 106
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPLNM+G+EG R +R + + +P WDER TT +A IL + KR
Sbjct: 107 GLPLNMDGTEGERAIKSRKLAKTV-EIWSGLPVRMWDERQTTCAAADILDESGTFGTKRK 165
Query: 134 QKVDSIAAALILQEVL 149
+ +DS++A +IL + L
Sbjct: 166 EILDSVSATVILDDYL 181
>gi|329942939|ref|ZP_08291718.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
gi|332287530|ref|YP_004422431.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
6BC]
gi|313848107|emb|CBY17106.1| putative Holliday junction resolvase [Chlamydophila psittaci RD1]
gi|325506817|gb|ADZ18455.1| Holliday junction resolvase-like protein [Chlamydophila psittaci
6BC]
gi|328815199|gb|EGF85188.1| hypothetical protein G5Q_0615 [Chlamydophila psittaci Cal10]
gi|328914779|gb|AEB55612.1| conserved hypothetical protein TIGR00250 [Chlamydophila psittaci
6BC]
Length = 150
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+ +D G KRIGLA + + P F+ K + TA L+ I N++ ++G
Sbjct: 8 KVFLGVDYGEKRIGLAYASSPLCISLPIGFIATGKTLEATAKLLVGIIQERNVSTVVLGN 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
P+ M + + + +++ V + WDERL++ A+++L D +SRKKR
Sbjct: 68 PIPMQKGQKSALQEDILKLSSLLQEFCPVEVILWDERLSSAEAERMLKGDCGLSRKKRKG 127
Query: 135 KVDSIAAALILQEVLDRISFL 155
K DSIAA LIL L+ L
Sbjct: 128 KTDSIAANLILTSFLESSPHL 148
>gi|255022230|ref|ZP_05294225.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
51756]
gi|254968321|gb|EET25888.1| Putative Holliday junction resolvase [Acidithiobacillus caldus ATCC
51756]
Length = 148
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ P ID G++RIGLAI P + L + A
Sbjct: 6 AQSATGPWLGIDYGSRRIGLAILAHLDIAPRPLGTVANGGGGPDWPALEKVLAQWAPVAC 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GL +G+E R F + ++ +P ++ DERL++V+A L + + +++
Sbjct: 66 VVGLTARADGTESAVARGARHFAA-ALSQRYGLPILWQDERLSSVTAAVRLREASPRKRR 124
Query: 132 RIQKVDSIAAALILQEV 148
+ +D +AA IL+
Sbjct: 125 QRLALDPLAACEILRGF 141
>gi|303256218|ref|ZP_07342234.1| putative Holliday junction resolvase [Burkholderiales bacterium
1_1_47]
gi|302860947|gb|EFL84022.1| putative Holliday junction resolvase [Burkholderiales bacterium
1_1_47]
Length = 144
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ L + + + D G KRIG+A+ + + A P + KK Q E+ ++ A
Sbjct: 1 MERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPA 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++G+P + +G F + + + + +P V DER ++V A+ +
Sbjct: 61 AVVVGVPRHKDGKPNDMTPICERFANQV-EGRYGIPVVREDERYSSVEAESYHDADDDEP 119
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
AA+IL + L+++
Sbjct: 120 IDDEA------AAIILDQWLNKVP 137
>gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164]
gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164]
Length = 147
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GT+++G+AI + A+P K LL + F++GLPLN
Sbjct: 10 IMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLPLN 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+ SE R F + + + + DERLTT A+ L R DS
Sbjct: 70 MDESESELSARARKFAR-RLRHQTNIETLMVDERLTTREARSELSQYQAQGGNRKLAADS 128
Query: 139 IAAALILQEV 148
IAAAL+++
Sbjct: 129 IAAALLIESW 138
>gi|29840356|ref|NP_829462.1| Holliday junction resolvase-like protein [Chlamydophila caviae
GPIC]
gi|33301619|sp|Q822T1|RUVX_CHLCV RecName: Full=Putative Holliday junction resolvase
gi|29834705|gb|AAP05340.1| conserved hypothetical protein TIGR00250 [Chlamydophila caviae
GPIC]
Length = 163
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV-TQTALELLSFITTENIAA 70
K + ID G +RIGLA + + P + TA L + I +++
Sbjct: 5 KNKKEKTFLGIDYGQRRIGLAYAASPLFISLPIGCIEAGNTVEATAKILFNIIQERSVSC 64
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSR 129
++G P+ M + + + ++I V + WDERL++ A+++L D +SR
Sbjct: 65 VVLGNPIPMQKGQKSALQEEITKLSSLIQESCGVEVILWDERLSSAQAERMLKGDCGLSR 124
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
KKR K D+IAA LIL L+
Sbjct: 125 KKRKGKTDTIAATLILTSFLES 146
>gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp.
1501(2011)]
Length = 179
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 1 MSILLI-----------EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR 49
M +L + S + +D G K++G+A+ + + A P LV
Sbjct: 1 MPMLNPMLDDKVLDSEAVETKNSSPEQTVLLGLDYGVKKMGMALGNTVTQDARPFDILVM 60
Query: 50 KKVTQ-TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV----YV 104
LL I T I ++GLPLNM+GS F + R + +V
Sbjct: 61 NNGQPADWDNLLGIIDTWKIGRVVVGLPLNMDGSSSMIAKRAHKFARRLAHRLMEQRIHV 120
Query: 105 PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
P +DERLT+V A+++ ++ + + +R +D I+A L+LQ L
Sbjct: 121 PVQLFDERLTSVEAREMAWELGLIKNER-DPIDDISACLLLQSYL 164
>gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii L2-6]
Length = 143
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA-FIIGL 75
I ++D G R GLA D P + K + + E A +IGL
Sbjct: 1 MKILAVDYGDSRTGLATCDRTEFLTSPITPQITVKARDKVAARVCEVAKEIEAELIVIGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+G+EG R +R + + +P WDER TT +A +L + KR
Sbjct: 61 PLNMDGTEGERARKSRKLAKTV-EIWSGLPVRMWDERQTTCAAADLLDESGTFGAKRKSI 119
Query: 136 VDSIAAALILQEVL 149
+DS++A +IL + +
Sbjct: 120 LDSVSATVILDDYI 133
>gi|313207140|ref|YP_004046317.1| holliday junction resolvase yqgf [Riemerella anatipestifer DSM
15868]
gi|312446456|gb|ADQ82811.1| Holliday junction resolvase YqgF [Riemerella anatipestifer DSM
15868]
gi|315022462|gb|EFT35489.1| Putative Holliday junction resolvase [Riemerella anatipestifer
RA-YM]
Length = 137
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R G+A +D + A + ++ E +I + A ++G
Sbjct: 1 MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSFLSE---YIHNNAVEAVVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P+++ G+ S F+ + + DER T+ A + ++K+R
Sbjct: 58 PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSGKNKKQRQEK 117
Query: 134 QKVDSIAAALILQEVLDRIS 153
+D I+A +ILQ L++
Sbjct: 118 GLIDKISATIILQNFLEQKR 137
>gi|238809908|dbj|BAH69698.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 145
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
++DLGTK G AISD G A ++ + T I ++
Sbjct: 1 MMRALALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVL 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G PL N + R +F H + +E TT++A IL + +S KKR
Sbjct: 61 GKPLRSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRK 120
Query: 134 QKVDSIAAALILQEVLDR 151
D+++A LILQE L+
Sbjct: 121 AHKDTLSAVLILQEFLNY 138
>gi|225351925|ref|ZP_03742948.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157172|gb|EEG70511.1| hypothetical protein BIFPSEUDO_03529 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 157
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
IDLG R+GLA+SDPG AHP V + E++ I E++ ++GLPL
Sbjct: 3 WLGIDLGDARVGLALSDPGITLAHPAGNIQVYGDSFRALDEVVDVIEDESVDHVVVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDM 125
++G EG R + N+ R K DERLTTV+A L D
Sbjct: 63 LLSGEEGKSAKKARRWTVNLEKRLRVAVDDENYALKEVPSIELVDERLTTVTAHHQLFDA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
V +K VD +A +ILQ +DR
Sbjct: 123 QVGGRKHRPMVDQQSAVVILQTAIDRR 149
>gi|292490363|ref|YP_003525802.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
gi|291578958|gb|ADE13415.1| Holliday junction resolvase YqgF [Nitrosococcus halophilus Nc4]
Length = 147
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G ++IG+A+ A P L + + I I+GLP
Sbjct: 14 RVVFGFDFGMRQIGVAVGQEVTHSATPLTTLKARDGKPNWDLVTRLIEQWRPDLLIVGLP 73
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
LNM+ SE + R F + + + + + DERL+T+ A++ L ++ S R ++
Sbjct: 74 LNMDQSEQLLTQAARRFGN-RLHGRYGLAVEWVDERLSTIEARERL-NLKPSSLGRHPEL 131
Query: 137 DSIAAALILQEVL 149
D +AA ILQ L
Sbjct: 132 DQVAAQCILQTWL 144
>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa]
gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa]
Length = 170
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTE 66
L S +D+G K +GLA+SDP + A P L+RKK + + S I+
Sbjct: 14 LKTSAINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATDFQSLISEL 73
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILID 124
++ FI+G P + P + FV ++ + V F +WDE T+ + + ++
Sbjct: 74 SLGGFIVGYPFDRQRGA-PDAVRVKLFVDDLCKTGKLEGVKFTYWDECFTSKNVELLVKP 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+++ +D AA ILQ LD ++
Sbjct: 133 LDLHPVHAKSIMDKFAAVGILQGYLDYVN 161
>gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis]
Length = 178
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTE 66
+ +D+G + +GLA+S+ A P L+RK + +L +
Sbjct: 14 FKNGKLGTGRLLGMDVGDRYVGLAVSNHLNEIASPHSVLIRKQSNIDSITDKLQELVRRF 73
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILID 124
++ F+IG PL + + + + FV + R + + +WDERLTT + + +L
Sbjct: 74 SLVGFVIGYPLPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYWDERLTTRAVESMLKP 133
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + + +D AA ILQ+ LD +
Sbjct: 134 LKIHPLQMKHMMDKFAAVGILQDFLDNLQH 163
>gi|15618161|ref|NP_224446.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
CWL029]
gi|15835772|ref|NP_300296.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
J138]
gi|33241578|ref|NP_876519.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
TW-183]
gi|6226490|sp|Q9Z8U7|RUVX_CHLPN RecName: Full=Putative Holliday junction resolvase
gi|4376511|gb|AAD18390.1| YggF Family hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|8978610|dbj|BAA98447.1| YggF family hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236086|gb|AAP98176.1| hypothetical protein CpB0243 [Chlamydophila pneumoniae TW-183]
gi|269303113|gb|ACZ33213.1| conserved hypothetical protein TIGR00250 [Chlamydophila pneumoniae
LPCoLN]
Length = 151
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+ ID G KRIGLA + P + K + +A L I + NI ++G
Sbjct: 8 KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
PL M + + + + + V + WDERL++V A+++L D +SRK R
Sbjct: 68 PLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKG 127
Query: 135 KVDSIAAALILQEVLDRIS 153
K DS+AA LIL LD +
Sbjct: 128 KTDSLAATLILTSFLDSLP 146
>gi|294056021|ref|YP_003549679.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
45221]
gi|293615354|gb|ADE55509.1| Holliday junction resolvase YqgF [Coraliomargarita akajimensis DSM
45221]
Length = 153
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID G KRIGLA +D A P P V + + I + ++G PLNM
Sbjct: 4 LGIDWGEKRIGLAFADEVG-IALPLPAAVAVSKKERMRHIEQMIQERRVRELVVGYPLNM 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+GS G + AF+ ++++ +P DERL++ S +Q L ++ ++DS
Sbjct: 63 DGSVGFKAKEVDAFIE-ELEKRFRLPVSRIDERLSSHSVEQGLRGQKKKPDRKSGEIDSR 121
Query: 140 AAALILQEVLDRISFLE 156
AAALILQ+ ++ E
Sbjct: 122 AAALILQDFIEEKRLNE 138
>gi|331001274|ref|ZP_08324900.1| RNAse H domain protein, YqgF family [Parasutterella
excrementihominis YIT 11859]
gi|329569001|gb|EGG50797.1| RNAse H domain protein, YqgF family [Parasutterella
excrementihominis YIT 11859]
Length = 150
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ L + + + D G KRIG+A+ + + A P + KK Q E+ ++ A
Sbjct: 7 LERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVLSDWQPA 66
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++G+P + +G F + + + + +P V DER ++V A+ +
Sbjct: 67 AVVVGVPRHKDGKPNDMTPICERFANQV-EGRYGIPVVREDERYSSVEAESYHDADDDEP 125
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
AA+IL + L+++
Sbjct: 126 IDDEA------AAIILDQWLNKVP 143
>gi|312793390|ref|YP_004026313.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312877035|ref|ZP_07737008.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796176|gb|EFR12532.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
lactoaceticus 6A]
gi|312180530|gb|ADQ40700.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 138
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G R+G+AISDP + A P + + EL S +I +IG P
Sbjct: 1 MRILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDSIFQRFSIEKVVIGYP 59
Query: 77 LNM-NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ + + + I + V V WDER +T + ++++ + ++ K++ +
Sbjct: 60 LSKLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVERVMNEE-LNWKRKKKV 118
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 119 IDKVAAVYILQGYLDFYN 136
>gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900]
Length = 146
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + FI+GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFAR-RLRHQTNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|145588432|ref|YP_001155029.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046838|gb|ABP33465.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 138
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 9/146 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + + D GT+R+G+A+ + + + LE+ S + +
Sbjct: 1 MPKSITVMAFDYGTRRVGVAVGNSVTQLGQALKTIAAANSEILFLEVASLLKEWQPDQLV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL+ +G+ F + + +P + DER T+ +++ + K
Sbjct: 61 VGRPLHPDGTPHEMTAKASRFGN-QLHGHFALPVSWVDERYTS-----AILEGD---AKM 111
Query: 133 IQKVDSIAAALILQEVLDRISFLESS 158
+D+ +AALIL++ S
Sbjct: 112 QDNLDAHSAALILEQYFAEQPNTNES 137
>gi|16752801|ref|NP_445069.1| Holliday junction resolvase-like protein [Chlamydophila pneumoniae
AR39]
gi|7189439|gb|AAF38349.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
Length = 154
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+ ID G KRIGLA + P + K + +A L I + NI ++G
Sbjct: 11 KAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGN 70
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
PL M + + + + + V + WDERL++V A+++L D +SRK R
Sbjct: 71 PLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKG 130
Query: 135 KVDSIAAALILQEVLDRIS 153
K DS+AA LIL LD +
Sbjct: 131 KTDSLAATLILTSFLDSLP 149
>gi|94311674|ref|YP_584884.1| Holliday junction resolvase-like protein [Cupriavidus metallidurans
CH34]
gi|146325596|sp|Q1LJR1|RUVX_RALME RecName: Full=Putative Holliday junction resolvase
gi|93355526|gb|ABF09615.1| putative Holliday junction resolvase (YqgF-like) [Cupriavidus
metallidurans CH34]
Length = 149
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 13/157 (8%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M+ + + L + + + + D G K+IG+A+ + R A L V +
Sbjct: 1 MTRDMPDQLGRETPRDGTVLAFDYGEKKIGVALGNFITRQASALTILPNVTVEARFDAVG 60
Query: 61 SFITTENIAAFIIGLPLN----MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
I ++G+P+N + E P + R F + ++ + +P + DER ++
Sbjct: 61 ELIRQWTPVRLVVGMPVNPEAGPDDEEQPSMRLARRFGN-QLNGRFNLPVEWVDERYSSR 119
Query: 117 SAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+A + +D+ AA +ILQ+ D +
Sbjct: 120 AAAMA--------GAKRGALDAEAARIILQQYFDELP 148
>gi|152002556|dbj|BAF73580.1| predicted endonuclease [Onion yellows phytoplasma OY-W]
Length = 151
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLN 78
+DLG K +G+A+S G + K + L I+ I ++G P +
Sbjct: 10 LGLDLGEKTLGIALSQTGIIAQKLKTIFFATHKYDRLIAPLQEIISQYQIKTIVLGYPKH 69
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN G + + F + ++ V + WDERL+TV A Q+L N + + +Q D
Sbjct: 70 MNNDIGIKAKISSDFKKTLENKFEQVKVILWDERLSTVQAIQMLKTNNKKKGQILQMKDE 129
Query: 139 IAAALILQEVLDRISFLESSK 159
IAA +ILQ LD I + +
Sbjct: 130 IAATIILQNYLDYIKLHPNKE 150
>gi|169634567|ref|YP_001708303.1| putative Holliday junction resolvase [Acinetobacter baumannii SDF]
gi|169797422|ref|YP_001715215.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ACICU]
gi|213155764|ref|YP_002317809.1| hypothetical protein AB57_0400 [Acinetobacter baumannii AB0057]
gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606]
gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB056]
gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB058]
gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB059]
gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii]
gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU]
gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606]
gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2]
gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
Length = 146
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + FI+GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFAR-RLRHQTNIETWMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|21232178|ref|NP_638095.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66767693|ref|YP_242455.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. 8004]
gi|32130039|sp|Q8P766|RUVX_XANCP RecName: Full=Putative Holliday junction resolvase
gi|81306327|sp|Q4UWY8|RUVX_XANC8 RecName: Full=Putative Holliday junction resolvase
gi|21113933|gb|AAM42019.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573025|gb|AAY48435.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 155
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++P+ + D+G++RIG+A+ A + + L A
Sbjct: 6 AIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPAGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVS 128
++G PL ++ + P AF + +R +P V DER ++V A Q
Sbjct: 66 VVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 129 RKKRIQKVDSIAAALILQEVL 149
R++ +D++AAA+I++ L
Sbjct: 125 RRRDADTLDAMAAAVIVERWL 145
>gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
Length = 154
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+G +RIG+A + G FA R + R+ + + + E A ++GLP
Sbjct: 5 VLALDVGERRIGVARGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGLPRR 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--IQKV 136
+ G + + RAF + + + VF DER T+ A Q L+ + R +R +V
Sbjct: 65 LRGGDSAQTSRVRAFAAQL--QAAGLEVVFEDERFTSRIATQSLVKSGLKRGQRQEKGRV 122
Query: 137 DSIAAALILQEVL 149
D AA LIL+ L
Sbjct: 123 DEGAAVLILETYL 135
>gi|118602105|ref|YP_903320.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567044|gb|ABL01849.1| Holliday junction resolvase YqgF [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 142
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRP-FLVRKKVTQTALELLSFITTENIAAFIIGL 75
D+GTKR G+AI++ A K + + I+ NI F++GL
Sbjct: 4 SAYLGFDVGTKRTGIAIANSLTMQATGIKVIKHHKNGSTNWVAFNEVISAHNINKFVVGL 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P N G E ++F + + + + F DE L++ A+++L + +
Sbjct: 64 PFNQQGKEQTMTFIAKSFGN-KLKNRYQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRDD 122
Query: 136 VDSIAAALILQEVLDRISF 154
VD ++ LILQ L+ F
Sbjct: 123 VDKQSSQLILQTWLNEKRF 141
>gi|71893554|ref|YP_279000.1| hypothetical protein MHJ_0198 [Mycoplasma hyopneumoniae J]
gi|72080541|ref|YP_287599.1| hypothetical protein MHP7448_0202 [Mycoplasma hyopneumoniae 7448]
Length = 130
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 27 KRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
K G AISD + ++P + R + ++ I+ ++G PL + G
Sbjct: 2 KTCGFAISDQNWKISYPLEQFNFNRYDFASVISRIAFWMKEYPISILVLGYPLTLAGKIS 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
PR F + + + VF DERLTT AQ L+D+ +S KKR + +D +AA +I
Sbjct: 62 PRTKMVEYFADLV-KKNYEIKVVFQDERLTTKQAQTFLLDLGISFKKRQKVIDKLAAQII 120
Query: 145 LQEVLD 150
L+ L+
Sbjct: 121 LERFLN 126
>gi|53803468|ref|YP_114751.1| hypothetical protein MCA2335 [Methylococcus capsulatus str. Bath]
gi|62900953|sp|Q605E9|RUVX_METCA RecName: Full=Putative Holliday junction resolvase
gi|53757229|gb|AAU91520.1| conserved hypothetical protein TIGR00250 [Methylococcus capsulatus
str. Bath]
Length = 151
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
D G + IG+A+ A P L + + + I A ++
Sbjct: 8 SRGATYLGFDFGERNIGVAVGQSVTGTAAPLRTLRAQPSARLWAAISELIDQWLPAGLVV 67
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GL +GSE P T F ++ + +P DE LTT ++ R++R
Sbjct: 68 GLSHQQDGSENPITAPTLRFCR-QLEGRYRLPVYTVDETLTTAESRTHFYQ----RRRRK 122
Query: 134 -----QKVDSIAAALILQEVL 149
Q D +AA LILQ
Sbjct: 123 SVEFEQVKDEMAAQLILQTWF 143
>gi|218294685|ref|ZP_03495539.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
gi|218244593|gb|EED11117.1| Holliday junction resolvase YqgF [Thermus aquaticus Y51MC23]
Length = 135
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIGLA+ + G FA R +LVR+ + + LL F+ E +A I+GLP
Sbjct: 1 MRLGALDVGEARIGLAVGEEGLPFAFGRGYLVRRSLEEDVEALLDFVRREGLAKLIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L + E + V + R V WDER TT +A L ++ K+
Sbjct: 61 LRTDLKESAQAKRVLPLVEALRAR--GVEVELWDERYTTKAAMARLRHAPRRVREDKGKL 118
Query: 137 DSIAAALILQEVL 149
D ++A ++L+ L
Sbjct: 119 DEMSAVVLLEGYL 131
>gi|89900172|ref|YP_522643.1| Holliday junction resolvase-like protein [Rhodoferax ferrireducens
T118]
gi|146325599|sp|Q21YP1|RUVX_RHOFD RecName: Full=Putative Holliday junction resolvase
gi|89344909|gb|ABD69112.1| Holliday junction resolvase YqgF [Rhodoferax ferrireducens T118]
Length = 156
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q ++D G KR G A+ + R A P+ + + +++ + A ++G+P
Sbjct: 33 QTFLALDFGLKRTGFAVGNRLLRTAQPQGTIAAE-GDARFVKIALQLKEWQPDALVVGVP 91
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ R F + + +P DER TT A + R R
Sbjct: 92 FHPDGAAHENTLRARRFAR-QLQGRFKLPVFEVDERYTTTEA--------LGRGARDA-- 140
Query: 137 DSIAAALILQEVLDRI 152
D++AA +IL++ L I
Sbjct: 141 DAMAACIILEQFLRSI 156
>gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145]
gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145]
Length = 147
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + Q I + D GT+++G+++ A+P P K ELL + +
Sbjct: 1 MPDVNAPQTIMAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPN 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
F++GLPLNM+ SE R F + + + DERLTT A+ L
Sbjct: 61 LFLVGLPLNMDDSESELSTRARKFAR-RLRHQTNIETWMVDERLTTREARDELDHYQAQG 119
Query: 130 KKRIQKVDSIAAALILQEV 148
+ + DSIAAAL+++
Sbjct: 120 RGKKLSADSIAAALLIESW 138
>gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
Length = 156
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D G ++G+A+ + + A P ELL I + ++ IIGLPL
Sbjct: 13 TVMGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLPL 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR----KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
NM+GS + + F + P + DERLT+ A+ + + + +
Sbjct: 73 NMDGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSD-K 131
Query: 134 QKVDSIAAALILQEVL 149
+ +DSIA+A++L L
Sbjct: 132 EPIDSIASAIMLGSWL 147
>gi|15838818|ref|NP_299506.1| Holliday junction resolvase-like protein [Xylella fastidiosa 9a5c]
gi|9107376|gb|AAF85026.1|AE004035_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 155
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
PL + G + P +AF + + +P V DER ++V A R++
Sbjct: 69 DPLTLEGHDQPIRKQAQAFA-CQLRERYRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
gi|212672618|gb|EEB33101.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
Length = 145
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFII 73
ID G R GLA +DP A+P + + L I E A ++
Sbjct: 1 MKWVGIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAALAGRILEERPDAVVM 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL +G+E R V + R+V +PF F E L++ +A++ L ++ + ++
Sbjct: 61 GLPLLTDGTESMTTRQVRN-VTERLKRRVPLPFYFMSELLSSEAAERELREVGRTGRRCK 119
Query: 134 QKVDSIAAALILQEVL 149
+D AA IL+ L
Sbjct: 120 AVLDQQAAVRILESFL 135
>gi|308189957|ref|YP_003922888.1| Holliday junction resolvase [Mycoplasma fermentans JER]
gi|319777239|ref|YP_004136890.1| putative holliday junction resolvase [Mycoplasma fermentans M64]
gi|307624699|gb|ADN69004.1| putative Holliday junction resolvase [Mycoplasma fermentans JER]
gi|318038314|gb|ADV34513.1| Putative Holliday junction resolvase [Mycoplasma fermentans M64]
Length = 144
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIG 74
++DLGTK G AISD G A ++ + T I ++G
Sbjct: 1 MRALALDLGTKTCGFAISDEGMIIASALETLHFEENDFNAIIEQIKIYQKTYKIDKLVLG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
PL N + R +F H + +E TT++A IL + +S KKR
Sbjct: 61 KPLRSNNTSSERTVLFESFAHKLKGIFKDYKIYQVNEYGTTIAATNILKEAKLSIKKRKA 120
Query: 135 KVDSIAAALILQEVLDR 151
D+++A LILQE L+
Sbjct: 121 HKDTLSAVLILQEFLNY 137
>gi|283769385|ref|ZP_06342284.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
gi|283104042|gb|EFC05426.1| RNAse H-fold protein YqgF [Bulleidia extructa W1219]
Length = 140
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFII 73
+DLG+ G++ S AH + + ++L+ I E ++
Sbjct: 1 MSKYLGLDLGSVTCGVSAS-ETGLIAHTVETIRFKNEDYNEAMDKVLAIIEREKPDEIVL 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G PL +NG GPR + +++ + +P DER TTV A++IL+ ++SRKKR
Sbjct: 60 GYPLLLNGDVGPRAQLSEE-FKEVLEEECGLPVHLMDERFTTVEAEEILLQADISRKKRK 118
Query: 134 QKVDSIAAALILQEVLDRI 152
+K+D +AA ILQ LDRI
Sbjct: 119 KKIDQLAAVQILQYYLDRI 137
>gi|114319510|ref|YP_741193.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1]
gi|114225904|gb|ABI55703.1| Holliday junction resolvase YqgF [Alkalilimnicola ehrlichii MLHE-1]
Length = 144
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + D G +RIG+A+ + L + E+ + ++
Sbjct: 4 PVSGTWLAFDHGDRRIGVAVGEALTGGGRALITLSARAGQPDWEEVGRLLAEWRPQGVVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ +GS+ + R F + + + DERL++ A L + +R
Sbjct: 64 GLPLHADGSDSESTRAARKFAQ-RLHGRYGLRVELVDERLSSHEAAARLSERRGRPTRRP 122
Query: 134 QKVDSIAAALILQEVL 149
+DS AA +IL+
Sbjct: 123 GALDSEAARVILETWF 138
>gi|332670519|ref|YP_004453527.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
gi|332339557|gb|AEE46140.1| Holliday junction resolvase YqgF [Cellulomonas fimi ATCC 484]
Length = 186
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-------KKVTQTALELLSFITTENI 68
++D+G+ R+GLA SDP A P L R ++V ++
Sbjct: 8 RGARLAVDVGSVRVGLAASDPDGLVATPVATLARDTPGRKERRVPTDVAAIVHEAGERGA 67
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
A +GLP +++G+EG + RA+ + VP DER++TV+A Q L S
Sbjct: 68 AVVYVGLPRHLSGAEGAASAAARAYSVGLAQAVAPVPVRLVDERMSTVTAHQALQASGRS 127
Query: 129 RKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
++ Q VD AA +ILQ LD G
Sbjct: 128 GRRHRQVVDQAAAVVILQYALDAERATGRRPG 159
>gi|330941625|gb|EGH44406.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 129
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRIQKVD 137
M+G+ F ++ + V DERLTT A+ + + R VD
Sbjct: 67 MDGTPSDMSARAEKFSR-KLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRDNPVD 125
Query: 138 SIAA 141
+IAA
Sbjct: 126 AIAA 129
>gi|332530313|ref|ZP_08406259.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC
19624]
gi|332040299|gb|EGI76679.1| Holliday junction resolvase-like protein [Hylemonella gracilis ATCC
19624]
Length = 136
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q ++D G KR G+A+ + + A P+ +R + ++ I A ++G+P
Sbjct: 8 QTFLALDFGLKRTGVAVGNRLLKQAQPQAT-IRAEGDARFTQIAERIREWQPDALVVGVP 66
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ R F + + +P DER +T A I K+
Sbjct: 67 FHPDGAAHDNTERARKFAR-QLRGRFGLPVHEVDERYSTTEA----IAEGGGGKRFDA-- 119
Query: 137 DSIAAALILQEVLDRI 152
D+ AA +IL++ L +
Sbjct: 120 DAGAACVILEQFLRSL 135
>gi|254491021|ref|ZP_05104202.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxidans
DMS010]
gi|224463534|gb|EEF79802.1| conserved hypothetical protein TIGR00250 [Methylophaga thiooxydans
DMS010]
Length = 125
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86
K IG+A+ A+P + + ++ + I+GLPLNM+G+E
Sbjct: 2 KNIGIAVGQELTHTANPLTAIKARDGIPDWEQIHKLLDEWKPQLLIVGLPLNMDGTEQDM 61
Query: 87 VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQ 146
+ R F + + + +P + DERLTT A + + ++ VD ++A LILQ
Sbjct: 62 TAAARRFGN-RLHGRFNIPVEWQDERLTTYEALDQMGIRSKMDTRQRSDVDQLSAQLILQ 120
Query: 147 EVLDR 151
L++
Sbjct: 121 SWLNQ 125
>gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 140
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPF---LVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D G R GLA+SDP R A P L I A ++GLPL
Sbjct: 2 DYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLTQ 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G E R V + R++ +PF + E L++ A L + + +KR +D
Sbjct: 62 DGKESLTTRQVRN-VTQRLKRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQ 120
Query: 140 AAALILQEVL 149
AA IL L
Sbjct: 121 AAVRILSSFL 130
>gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
Length = 138
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+DLGTKRIG+A+++ A P + + L + + + ++GL
Sbjct: 6 GGRALGVDLGTKRIGVAVAE--GSLALPLEVIDAR--GPWRARLAELVASVGASVVVVGL 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ ++GSEG R + + + VP VF DERL++ +A++ L V + R
Sbjct: 62 PIGLDGSEGRAAARVRQWSE-GLAEHLEVPVVFVDERLSSQAAERRLGAAGVDARSRRGA 120
Query: 136 VDSIAAALILQEVL 149
VD+ AA IL+ L
Sbjct: 121 VDAFAATEILERWL 134
>gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus
PHEA-2]
Length = 146
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFAR-RLRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1]
gi|62900972|sp|Q6FF55|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase
gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1]
Length = 147
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+Q I + D GT+++G+AI + P K +LL + F++G
Sbjct: 6 SHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPLNM+ SE R F + + + DERLTT A+ L + +
Sbjct: 66 LPLNMDDSESELSARARKFAR-RLRHQTNITTWMVDERLTTREARDELESYQEQGRAKKI 124
Query: 135 KVDSIAAALILQEV 148
DSIAA+L++Q
Sbjct: 125 AADSIAASLLIQSW 138
>gi|319760386|ref|YP_004124324.1| hypothetical protein BVAF_252 [Candidatus Blochmannia vafer str.
BVAF]
gi|318039100|gb|ADV33650.1| conserved hypothetical protein [Candidatus Blochmannia vafer str.
BVAF]
Length = 146
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D GTK IG+A+ L T + I+GLPL
Sbjct: 7 IMAFDFGTKNIGVAVGQKLTCTTTSLNVLHSIAGTPDWKNIELMYNEWKPKTLIVGLPLQ 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKRIQK 135
++GSE ++ F + K +DER TT+ A+ + S+ K + K
Sbjct: 67 IDGSEQYITILSKKFA-IQLKNKFNTTVEMYDERFTTLEARSNFYNQYCSKFSEKIKKNK 125
Query: 136 VDSIAAALILQEVLD 150
+DSIAA +IL+ L+
Sbjct: 126 IDSIAAEIILKSWLN 140
>gi|330444557|ref|YP_004377543.1| hypothetical protein G5S_0903 [Chlamydophila pecorum E58]
gi|328807667|gb|AEB41840.1| conserved hypothetical protein TIGR00250 [Chlamydophila pecorum
E58]
Length = 146
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
+D G KR+GLA + + P + R K + L I +++ I+G P+
Sbjct: 11 LGVDYGLKRVGLACASAPLFLSVPIGTVERGKNLDVIVTTLRKIIVERHVSCVILGNPIP 70
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL-IDMNVSRKKRIQKVD 137
M G++ + A + + + WDERL++ A+++L D +SRK+R K D
Sbjct: 71 MYGNQVSALQEEIAIFAKKLKEATCIEVILWDERLSSAQAERMLKHDCGLSRKQRKGKTD 130
Query: 138 SIAAALILQEVLDR 151
++AA LIL L+R
Sbjct: 131 TLAATLILSSFLER 144
>gi|299771798|ref|YP_003733824.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
gi|298701886|gb|ADI92451.1| Holliday junction resolvase-like protein [Acinetobacter sp. DR1]
Length = 146
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI A+P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPNLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFAR-RLRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|71274448|ref|ZP_00650736.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
gi|71898425|ref|ZP_00680597.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|71900444|ref|ZP_00682576.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|170730547|ref|YP_001775980.1| Holliday junction resolvase-like protein [Xylella fastidiosa M12]
gi|226695319|sp|B0U3C1|RUVX_XYLFM RecName: Full=Putative Holliday junction resolvase
gi|71164180|gb|EAO13894.1| Conserved hypothetical protein 250 [Xylella fastidiosa Dixon]
gi|71729809|gb|EAO31908.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|71731738|gb|EAO33797.1| Conserved hypothetical protein 250 [Xylella fastidiosa Ann-1]
gi|167965340|gb|ACA12350.1| putative Holliday junction resolvase [Xylella fastidiosa M12]
Length = 155
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P+ + D+GT+RIG+A+ A + V L ++G
Sbjct: 9 PDGIVLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL---IDMNVSRKK 131
PL + G + P AF + + +P V DER ++V A R++
Sbjct: 69 DPLTLEGHDQPIRKQAHAFA-CQLRERYRLPVVLVDERSSSVEAASRFAGARAAGYKRRR 127
Query: 132 RIQKVDSIAAALILQEVL 149
+D+IAAA+IL+ L
Sbjct: 128 DADTLDAIAAAVILERWL 145
>gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group]
Length = 180
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ- 54
M +L + L + + + + +D+G+K +GLA+SD R A P L R K
Sbjct: 1 MRLLKADQLFRKVIDGGSRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 55 -TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
T+ + +L + + + D AA ILQ LD ++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165
>gi|289209567|ref|YP_003461633.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
gi|288945198|gb|ADC72897.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
Length = 130
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G +RIG+A+ + A L + + ++ F++G P
Sbjct: 3 LLAFDYGRRRIGIAVGEELTGAARGLRTL-NTDSPELWPVIDRLVSEWAPEGFVVGWPTQ 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G P RAF ++ + P ++DE LT+ A++ R + +D+
Sbjct: 62 ADGKPTPLAKRIRAFGA-ALEARYNQPVYWYDEHLTSHLARERS-----GRGRHDPGLDA 115
Query: 139 IAAALILQEVL 149
AAA+IL+
Sbjct: 116 HAAAVILEGWF 126
>gi|255535831|ref|YP_003096202.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium
3519-10]
gi|255342027|gb|ACU08140.1| Putative Holliday junction resolvase [Flavobacteriaceae bacterium
3519-10]
Length = 141
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ I ++D G R G+A +D + A + K + + N+ +
Sbjct: 1 MRTMAQILAVDYGKARCGIAATDDFQIIASGLDTVETKNIFTFL---AGYFAANNVELVV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP ++ G+ F+ + V +DER T+ A + ++KKR
Sbjct: 58 VGLPTDLKGNLSSIETDIAKFLEKFKTQFPTVKTERFDERFTSKMASFYISQSGKNKKKR 117
Query: 133 --IQKVDSIAAALILQEVLDR 151
+D ++A LILQ L++
Sbjct: 118 EEKGLIDKVSATLILQNFLEQ 138
>gi|111073618|emb|CAL29481.1| hypothetical protein OW3-C [Wolbachia endosymbiont of Onchocerca
volvulus]
Length = 136
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G K+IG+A SD + A RK +++ L + +IGLPL
Sbjct: 1 MCLDMGKKQIGIAFSDKTQLIATAHSIYNRKNISKDLGYLNRVFKENEAGSVVIGLPLET 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N + F M+ + V DE L+T A L VS K + D I
Sbjct: 61 NRKSSEWYETIIQFATKMVKKYK-VNIYLQDESLSTFIAIHTLKTAGVSITKSKKIDDKI 119
Query: 140 AAALILQEVLDRISFLE 156
+A +ILQ LD+I+ ++
Sbjct: 120 SACIILQRTLDKINAIK 136
>gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group]
Length = 180
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 1 MSILLIEDLVKSL-----KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ- 54
M +L + L + + + + +D+G+K +GLA+SD R A P L R K
Sbjct: 1 MRLLKADQLFRKVIDGGWRKQSRLLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNIS 60
Query: 55 -TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDE 111
A + ++ ++ ++A F++G P N+ G P R V + + + + +WDE
Sbjct: 61 LMADDFVTLVSKYSLAGFVVGYPFNLQGQSSPNALQVRLLVGELCKTGKLDDMSYTYWDE 120
Query: 112 RLTTVS--AQQILIDMNVSRK-KRIQKVDSIAAALILQEVLDRIS 153
T+ + +L + + + D AA ILQ LD ++
Sbjct: 121 NFTSKVMCVEALLHPLKLHDPVETKTMTDKFAAVCILQRYLDNMN 165
>gi|89101195|ref|ZP_01174025.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
B-14911]
gi|89084081|gb|EAR63252.1| Holliday junction resolvase-like protein [Bacillus sp. NRRL
B-14911]
Length = 111
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
++ +L I +++ ++GLP NMNG+ GPR +++ F ++R +P V W
Sbjct: 9 EEKEFGFDQLGKIIKEYDVSTIVVGLPKNMNGTIGPRGEASQFFAG-ELERLFGLPVVLW 67
Query: 110 DERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
DERLTT++A+++L++ +VSRKKR + +D +AA++ILQ LD
Sbjct: 68 DERLTTMAAERVLLEADVSRKKRKKVIDKMAASMILQGYLDSR 110
>gi|294341151|emb|CAZ89552.1| putative holliday junction resolvase [Thiomonas sp. 3As]
Length = 137
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG A+ + R A L + + + I ++GLPL
Sbjct: 14 TVLGFDWGAKRIGTAVGNSLTRSATALRTLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F ++ + +P DER T+V+A+ + VD
Sbjct: 74 HPDGAAHDNTAHAQRFAR-QLEGRFRLPVALVDERYTSVAAED----------DGAKDVD 122
Query: 138 SIAAALILQEVLDRI 152
S AA LI+++ L +
Sbjct: 123 SAAAQLIVEQYLQQR 137
>gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
Length = 140
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ + D G IG+A+ + A P + + A ++ + + ++G P+N
Sbjct: 3 VLAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPIN 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRKKRIQKVD 137
M+G++ R F + + D+ + F DERLTT A ++I K+D
Sbjct: 63 MDGTKEELTFKARKFGNRLADKFK-LKVYFKDERLTTADAKERIFSQYGYKGLASKGKID 121
Query: 138 SIAAALILQEVLDRIS 153
++AALIL+ + +
Sbjct: 122 CVSAALILEAFFEEKA 137
>gi|89898213|ref|YP_515323.1| Holliday junction resolvase-like protein [Chlamydophila felis
Fe/C-56]
gi|146325561|sp|Q254W0|RUVX_CHLFF RecName: Full=Putative Holliday junction resolvase
gi|89331585|dbj|BAE81178.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 150
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENI 68
+ K + +D G +RIGLA + + P F+ K + TA L I +
Sbjct: 1 MSKPKAKKIFLGVDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQSLAKIILEREV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
+ ++G P+ M + + + ++I +V V WDERL++ A+++L D +
Sbjct: 61 SCVVLGNPIPMQIGQKSSLQEEILKISSLIQEFCHVDVVLWDERLSSAQAERMLKCDCGL 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLE 156
SRK+R K DS+AA LIL L+ +
Sbjct: 121 SRKQRKGKTDSVAATLILTNFLESSPSIR 149
>gi|163782351|ref|ZP_02177349.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882384|gb|EDP75890.1| hypothetical protein HG1285_06175 [Hydrogenivirga sp. 128-5-R1-1]
Length = 132
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +ID GTKR+GLAI D A P+ L + + ++ + ++GLP
Sbjct: 1 MKIIAIDFGTKRVGLAIGDTDLGIAVPKGVLR--NDANLLDRIEDIVRSKGVKKVVVGLP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G EG R R F + R V WDER +T+ A+ L D+ R++ + +
Sbjct: 59 LTPSGREGERAKLVREFAEALRKRLKDVDIELWDERYSTMEAESRLRDLPPRRRR--EVL 116
Query: 137 DSIAAALILQEVL 149
D+I+A +IL+E L
Sbjct: 117 DAISAQIILEEYL 129
>gi|312622551|ref|YP_004024164.1| holliday junction resolvase yqgf [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203018|gb|ADQ46345.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
kronotskyensis 2002]
Length = 138
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G R+G+AISDP + A P + + EL NI +IG P
Sbjct: 1 MRILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYP 59
Query: 77 LNM-NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ + + + I+ + V V WDER +T + ++++ + ++ K++ +
Sbjct: 60 LSKLHPDQKDEKLKKIDEISEKIESRYNVEIVKWDERFSTKAVERVIDEE-LNWKRKKKI 118
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 119 IDKVAAVYILQGYLDFYN 136
>gi|312127726|ref|YP_003992600.1| holliday junction resolvase yqgf [Caldicellulosiruptor
hydrothermalis 108]
gi|311777745|gb|ADQ07231.1| Holliday junction resolvase YqgF [Caldicellulosiruptor
hydrothermalis 108]
Length = 138
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G R+G+AISDP + A P + + EL +I +IG P
Sbjct: 1 MRILCLDMGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQRYSIEKVVIGYP 59
Query: 77 LNM-NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ + + + I + V V WDER +T + +++ I+ ++ K++ +
Sbjct: 60 LSKLHPDQKDEKLKKIDEISEKIKSRYNVEIVKWDERFSTKAVEKV-INGELNWKRKKKV 118
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 119 IDKVAAVYILQGYLDFYN 136
>gi|237746673|ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
gi|229378024|gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS]
Length = 133
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D G KRIG AI + + A P + + + E+ I A ++GLP +
Sbjct: 8 ILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPSH 67
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+E R F + + R DER T+ + D+
Sbjct: 68 PDGTEHDMTRRCRRFANQLHGRFALDTI-LVDERYTSSVLNFKPGQAD----------DA 116
Query: 139 IAAALILQEVLDR 151
AAALILQ+ D
Sbjct: 117 HAAALILQQYFDE 129
>gi|15924606|ref|NP_372140.1| hypothetical protein SAV1616 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927196|ref|NP_374729.1| Holliday junction resolvase-like protein [Staphylococcus aureus
subsp. aureus N315]
gi|156979934|ref|YP_001442193.1| hypothetical protein SAHV_1603 [Staphylococcus aureus subsp. aureus
Mu3]
gi|262048611|ref|ZP_06021494.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
gi|262051271|ref|ZP_06023495.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
gi|13701414|dbj|BAB42708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247387|dbj|BAB57778.1| putative Holliday junction resolvase [Staphylococcus aureus subsp.
aureus Mu50]
gi|156722069|dbj|BAF78486.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|259160908|gb|EEW45928.1| hypothetical protein SA930_1702 [Staphylococcus aureus 930918-3]
gi|259163258|gb|EEW47817.1| hypothetical protein SAD30_1007 [Staphylococcus aureus D30]
gi|285817298|gb|ADC37785.1| Putative Holliday junction resolvase [Staphylococcus aureus
04-02981]
Length = 123
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 34 SDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
SD A L + +L+ I N+ +IGLP NMN S G R ++
Sbjct: 2 SDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASL 61
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ +++ + V WDERL+T++A++ L++ +VSR+KR Q +D +AA ILQ LD
Sbjct: 62 TYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDS 121
Query: 152 I 152
+
Sbjct: 122 L 122
>gi|46199780|ref|YP_005447.1| yqgf-family protein [Thermus thermophilus HB27]
gi|55981798|ref|YP_145095.1| hypothetical protein TTHA1829 [Thermus thermophilus HB8]
gi|62900932|sp|Q5SHA1|RUVX_THET8 RecName: Full=Putative Holliday junction resolvase
gi|62900992|sp|Q72HK9|RUVX_THET2 RecName: Full=Putative Holliday junction resolvase
gi|46197407|gb|AAS81820.1| yqgf-Family protein [Thermus thermophilus HB27]
gi|55773211|dbj|BAD71652.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 135
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLP
Sbjct: 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L + E + V + R V WDER TT AQ+ L ++ K+
Sbjct: 61 LRTDLKESAQAGKVLPLVEAL--RARGVEVELWDERFTTKLAQERLKHAPKRLRRDKGKL 118
Query: 137 DSIAAALILQEVL 149
D +AA ++L++ L
Sbjct: 119 DELAAVVLLEDYL 131
>gi|167957612|ref|ZP_02544686.1| Holliday junction resolvase YqgF [candidate division TM7
single-cell isolate TM7c]
Length = 134
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ +D+G KRIG+A++D G + A P + ++L EN ++G P
Sbjct: 4 RLLCLDVGEKRIGVAVADLGVKIAIPLTTIEVDGTE--IEQILRLYGRENARTLVVGYPR 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
N G + FV + + Y+ F DE LT+V A+Q L + +D
Sbjct: 62 NQQGETTAQTVFVEEFVKPLEE---YINIEFQDESLTSVQAEQRLKSRGQNYT--KGDID 116
Query: 138 SIAAALILQEVLD 150
S AA +ILQ+ ++
Sbjct: 117 SEAATIILQDYME 129
>gi|15604904|ref|NP_219688.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
D/UW-3/CX]
gi|76788906|ref|YP_327992.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
A/HAR-13]
gi|237802608|ref|YP_002887802.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237804530|ref|YP_002888684.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255310984|ref|ZP_05353554.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
6276]
gi|255317285|ref|ZP_05358531.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
6276s]
gi|6226795|sp|Q46370|RUVX_CHLTR RecName: Full=Putative Holliday junction resolvase
gi|146325562|sp|Q3KMH8|RUVX_CHLTA RecName: Full=Putative Holliday junction resolvase
gi|3328589|gb|AAC67776.1| YqgF Family [Chlamydia trachomatis D/UW-3/CX]
gi|76167436|gb|AAX50444.1| hypothetical cytosolic protein [Chlamydia trachomatis A/HAR-13]
gi|231272830|emb|CAX09739.1| putative Holliday junction resolvase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273842|emb|CAX10632.1| putative Holliday junction resolvase [Chlamydia trachomatis
B/Jali20/OT]
gi|296435699|gb|ADH17873.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/9768]
gi|296436623|gb|ADH18793.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/11222]
gi|296437559|gb|ADH19720.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/11074]
gi|297140058|gb|ADH96816.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
G/9301]
gi|297748314|gb|ADI50860.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]
gi|297749194|gb|ADI51872.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]
Length = 148
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENI 68
+ K Q ID G KRIGLA + P R +T TA L+S I +
Sbjct: 1 MNIAKQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
+ G PL M + V S + +I + + WDERL++ A+++L D +
Sbjct: 61 TTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGL 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
+RK+R DS+AA LIL LD
Sbjct: 121 NRKQRKNPSDSLAATLILSSFLDSR 145
>gi|294783330|ref|ZP_06748654.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
1_1_41FAA]
gi|294480208|gb|EFG27985.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
1_1_41FAA]
Length = 138
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + N + ++G+
Sbjct: 1 MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL D+N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIEDLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168]
gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168]
Length = 122
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
+AI A + + T + + I+GLPLNM+G+E P
Sbjct: 1 MAIGQRITGSARALAAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMDGTEQPLTARA 60
Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
R F + I + V DERL+TV A+ L + R K+DS +A +IL+ +
Sbjct: 61 RKFAN-RIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGKIDSASAVIILESYFE 119
Query: 151 R 151
+
Sbjct: 120 Q 120
>gi|237739615|ref|ZP_04570096.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
2_1_31]
gi|262066711|ref|ZP_06026323.1| putative Holliday junction resolvase [Fusobacterium periodonticum
ATCC 33693]
gi|229423223|gb|EEO38270.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
2_1_31]
gi|291379510|gb|EFE87028.1| putative Holliday junction resolvase [Fusobacterium periodonticum
ATCC 33693]
Length = 138
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + N + ++G+
Sbjct: 1 MKRYLALDIGDVRIGVARSDLMGIIATPLETINRKKV-KSVKRIAELCKENNTTSIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL D+N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKDLNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
Length = 134
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+SDP + A P L RK +T ELL + + + ++G+P+N
Sbjct: 1 MALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFEELLKIVLDKGVEEIVVGIPINA 60
Query: 80 NGSEGPRVHSTRAFVH----NMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G + F + +R +P DE +T A+++ + K ++
Sbjct: 61 QGEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLG----KEKEE 116
Query: 136 VDSIAAALILQEVLD 150
+D AAALIL+E L+
Sbjct: 117 LDDYAAALILKEWLE 131
>gi|222529202|ref|YP_002573084.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
gi|254767493|sp|B9MRK7|RUVX_ANATD RecName: Full=Putative Holliday junction resolvase
gi|222456049|gb|ACM60311.1| Holliday junction resolvase YqgF [Caldicellulosiruptor bescii DSM
6725]
Length = 138
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G R+G+AISDP + A P + + EL NI +IG P
Sbjct: 1 MRILCLDIGNSRVGVAISDPLKITAQPVMTIELRN-KDLFEELDKIFQGYNIEKVVIGYP 59
Query: 77 LNM-NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L+ + + + I + V V WDER +T + ++++ + ++ K++ +
Sbjct: 60 LSKLHPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDEE-LNWKRKKKI 118
Query: 136 VDSIAAALILQEVLDRIS 153
+D +AA ILQ LD +
Sbjct: 119 IDKVAAVYILQGYLDFYN 136
>gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1]
gi|62900971|sp|Q6F101|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase
gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1]
Length = 142
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAAFII 73
I +D+G+K IGLA S A L + + L FI ++ F+
Sbjct: 1 MSNILGLDVGSKTIGLASS--TGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVF 58
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMI---DRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
G P NMNGS G R F+ + + DER TT A+ I+I+ +SR+
Sbjct: 59 GYPKNMNGSIGERAEMVDYFIEGFMVYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQ 118
Query: 131 KRIQKVDSIAAALILQEVLDRI 152
K+ + D++AA LIL+ L++I
Sbjct: 119 KQKENKDTLAAQLILETYLEKI 140
>gi|226942476|ref|YP_002797549.1| Holliday junction resolvase-like protein [Azotobacter vinelandii
DJ]
gi|259495698|sp|C1DI77|RUVX_AZOVD RecName: Full=Putative Holliday junction resolvase
gi|226717403|gb|ACO76574.1| Holliday junction resolvase-like protein [Azotobacter vinelandii
DJ]
Length = 142
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 1/125 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + D GT++IG+A+ A L + + + A +
Sbjct: 1 MSGPRLLLGFDYGTRQIGVAVGQAITGQARELCVLKAQNGVPDWSRVEQLVKEWRPDAMV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+G+ F + + +P DERLTT A+ + R
Sbjct: 61 VGLPLNMDGTPSEMSERAERFAR-RLHGRFGLPVHTHDERLTTFEAKGYRLAQGQRDGYR 119
Query: 133 IQKVD 137
+ VD
Sbjct: 120 RRPVD 124
>gi|157413221|ref|YP_001484087.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9215]
gi|167012748|sp|A8G4H0|RUVX_PROM2 RecName: Full=Putative Holliday junction resolvase
gi|157387796|gb|ABV50501.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9215]
Length = 153
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I S+D+G KRIGLA DP ++ P + R K Q + ++I N+ FI+
Sbjct: 6 PKPKSILSLDIGNKRIGLAYCDPLCITSNILPAVKRFKNNQEIKIIRNYINEYNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+PL+ G + + + ++ ++ +PF F +E +T + +K +
Sbjct: 66 GIPLDERGQMTTQAIDCKNYGQ-LLSYELRLPFSFVNEHSSTWESSNRF----GIKKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS +A +IL++ ++ LE G
Sbjct: 121 GLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
Length = 156
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFI 72
+ +D G RIG+A SDP A P + R + + + + +
Sbjct: 2 RHGVRLGLDPGDARIGVARSDPTGFLATPLETVKKGRGDLARLQAIVAEIGEESTMLEVV 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLP ++ G E P R F ++ R VP DERLTTVSA+ +L D + R
Sbjct: 62 VGLPRSLKGGENPATAKVRDFAASLARRVAPVPVRLVDERLTTVSAEAMLRDRGRKGQDR 121
Query: 133 IQKVDSIAAALILQEVLDRISFLESSKG 160
VD AA +ILQ LD ++ G
Sbjct: 122 RAVVDMAAAVVILQHALDSERASGAAPG 149
>gi|238026385|ref|YP_002910616.1| Holliday junction resolvase-like protein [Burkholderia glumae BGR1]
gi|237875579|gb|ACR27912.1| Holliday junction resolvase YqgF [Burkholderia glumae BGR1]
Length = 152
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 17/152 (11%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ + D G KRIG+A+ + R A + + I A ++G
Sbjct: 7 REATLLAFDYGEKRIGVAVGNTLTRTARALVIVANLNRDHRFKAIGELIAEWRPDALVVG 66
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID---------M 125
LPL+ +G+ R F + ++ + +P + DER ++V A+ L +
Sbjct: 67 LPLHPDGTPHEMTQQARRFGN-QLNGRFSLPVSWIDERYSSVEARAQLRERGARGAARGA 125
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRISFLES 157
+ +V ILQ LD++S
Sbjct: 126 AAAVDAEAARV-------ILQTHLDQLSDHHE 150
>gi|296535596|ref|ZP_06897777.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Roseomonas cervicalis ATCC 49957]
gi|296264112|gb|EFH10556.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Roseomonas cervicalis ATCC 49957]
Length = 159
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M I+ + +L +L P+Q + +D G K IG+A++D A P L R K+ A E+
Sbjct: 1 MPIINLSELRAALSPDQRLIGLDPGKKIIGVALTDVTLMLASPYRGLARGKLAANAAEIG 60
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
+ E ++GLPL ++GS GP + + + + +P WDERL++ + +
Sbjct: 61 AIARREGAGGLVVGLPLGLDGSFGPAAQAAKDWTR-ALSEATGLPAALWDERLSSSAVNR 119
Query: 121 ILI-DMNVSR 129
+LI + +++R
Sbjct: 120 MLIQEADLTR 129
>gi|284931131|gb|ADC31069.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
F]
Length = 142
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIA-AFIIGLP 76
++D+G+K +G+A D + A P + Q EL + F+IG+P
Sbjct: 4 VALDVGSKTLGIATGDGEFKIASPYCVISFNQYDFKQCLAELKEKTASFFYDFKFVIGMP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
N++ ++ F+ ++ + +DE T++ A Q+LID + KKR +K+
Sbjct: 64 KNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKEKI 122
Query: 137 DSIAAALILQEVLDRISF 154
D +AA +ILQ D +
Sbjct: 123 DKLAAFVILQSFFDDDRY 140
>gi|296136975|ref|YP_003644217.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12]
gi|295797097|gb|ADG31887.1| Holliday junction resolvase YqgF [Thiomonas intermedia K12]
Length = 137
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KRIG A+ + R A L + + + I ++GLPL
Sbjct: 14 TVLGFDWGAKRIGTAVGNSLTRSATALRSLRADRNDLKFDAIAALIREWQPQQLVVGLPL 73
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F ++ + +P DER T+V+A+ + VD
Sbjct: 74 HPDGAAHDNTAHAQRFAR-QLEGRFRLPVALVDERYTSVAAED----------DGAKDVD 122
Query: 138 SIAAALILQEVLDRI 152
S AA LI+++ L +
Sbjct: 123 SAAAQLIVEQYLQQR 137
>gi|123968388|ref|YP_001009246.1| endonuclease [Prochlorococcus marinus str. AS9601]
gi|167012750|sp|A2BQS8|RUVX_PROMS RecName: Full=Putative Holliday junction resolvase
gi|123198498|gb|ABM70139.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. AS9601]
Length = 153
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+ FI+
Sbjct: 6 PKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+PL+ G + + + ++ ++ +PF + +E +T + + +K +
Sbjct: 66 GIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GIKKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS +A +IL++ ++ LE G
Sbjct: 121 GLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|261749261|ref|YP_003256946.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497353|gb|ACX83803.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 141
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G GL+I+DP ++FA + K + I + I +IGL
Sbjct: 1 MTRILGIDYGKVITGLSITDPLQKFAFGLNAIPTKNLMSFL---AILIAKKPIKKIVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR-IQ 134
P +N S + F+ + + V DER T+ A +I++ + +K+R
Sbjct: 58 PKTLNNKNALIEKSIQNFISKFHKKNPKIRIVRIDERFTSKIAFSTMIELGLKKKRRQKG 117
Query: 135 KVDSIAAALILQEVL 149
++ I+A +ILQ L
Sbjct: 118 LINKISATIILQSYL 132
>gi|166154394|ref|YP_001654512.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
434/Bu]
gi|166155269|ref|YP_001653524.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|255348541|ref|ZP_05380548.1| Holliday junction resolvase-like protein [Chlamydia trachomatis 70]
gi|255503081|ref|ZP_05381471.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
70s]
gi|255506759|ref|ZP_05382398.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
D(s)2923]
gi|301335653|ref|ZP_07223897.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
L2tet1]
gi|226725500|sp|B0B9T4|RUVX_CHLT2 RecName: Full=Putative Holliday junction resolvase
gi|226725501|sp|B0BBG4|RUVX_CHLTB RecName: Full=Putative Holliday junction resolvase
gi|558088|gb|AAA80196.1| unknown [Chlamydia trachomatis]
gi|165930382|emb|CAP03875.1| putative Holliday junction resolvase [Chlamydia trachomatis 434/Bu]
gi|165931257|emb|CAP06829.1| putative Holliday junction resolvase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|289525222|emb|CBJ14698.1| putative Holliday junction resolvase [Chlamydia trachomatis
Sweden2]
gi|296434770|gb|ADH16948.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
E/150]
gi|296438490|gb|ADH20643.1| Holliday junction resolvase-like protein [Chlamydia trachomatis
E/11023]
Length = 148
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENI 68
+ K Q ID G KRIGLA + P R +T TA L+S I +
Sbjct: 1 MNIAKQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSLTLTAQALVSIIKERAV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
+ G PL M + V S + +I + + WDERL++ A+++L D +
Sbjct: 61 TTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWDERLSSAQAERMLKSDCGL 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
+RK+R DS+AA LIL LD
Sbjct: 121 NRKQRKNSSDSLAATLILSSFLDSR 145
>gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
gi|172048441|sp|A5WBR2|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase
gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
Length = 177
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQ-TALELLSFITTENIAAFIIGLPL 77
+ +D G K++G+A+ + + A P L LL I T I ++GLPL
Sbjct: 28 LLGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRIGRVVVGLPL 87
Query: 78 NMNGSEGPRVHSTRAFVHNM----IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
NM+GS F + ++++++VP +DERLT+V A+++ ++ + + +R
Sbjct: 88 NMDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWELGLIKNER- 146
Query: 134 QKVDSIAAALILQEVL 149
+D I+A L+LQ L
Sbjct: 147 DPIDDISACLLLQSYL 162
>gi|146284269|ref|YP_001174422.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri
A1501]
gi|145572474|gb|ABP81580.1| predicted endonuclease involved in recombination [Pseudomonas
stutzeri A1501]
Length = 142
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + D GTK+IG+A+ A L + ++ + + A +
Sbjct: 1 MSTPRLLLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GS F ++ + +P DERLTT A+ + R
Sbjct: 61 VGLPLNMDGSPSEMSARAEKFAR-RLNGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYR 119
Query: 133 IQKVD 137
+ VD
Sbjct: 120 ERPVD 124
>gi|71892031|ref|YP_277761.1| putative endonuclease involved in recombination [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|146325553|sp|Q493F4|RUVX_BLOPB RecName: Full=Putative Holliday junction resolvase
gi|71796137|gb|AAZ40888.1| putative endonuclease involved in recombination [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 144
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
++ + + D GTK IG+AI A P L + + T
Sbjct: 1 MRDVNCVGIVMGFDFGTKHIGVAIGQKLTCTAQPLTVLQSQSGVPNWKRIRDIYNTWKPM 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA----QQILIDM 125
F++GLPL ++GSE P + F + VP DER +T A + D
Sbjct: 61 IFVVGLPLKIDGSEQPITILAKIFA-IQLKELFPVPVKMHDERFSTSEARLNYFKYYHDD 119
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDR 151
+R +++IAA +IL+ L++
Sbjct: 120 LCARSNIK--INAIAAGVILKSWLNK 143
>gi|62185187|ref|YP_219972.1| Holliday junction resolvase-like protein [Chlamydophila abortus
S26/3]
gi|81312649|sp|Q5L5S0|RUVX_CHLAB RecName: Full=Putative Holliday junction resolvase
gi|62148254|emb|CAH64019.1| putative Holliday junction resolvase [Chlamydophila abortus S26/3]
Length = 150
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGL 75
+ +D G +RIGLA + + P F+ K + TA L+ I ++ ++G
Sbjct: 8 KVFLGVDYGERRIGLAYAAYPLGISLPIGFIATGKTLEATAKLLVGIIQERRVSTVVLGN 67
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRKKRIQ 134
PL M + + + +++ V + WDERL++ A+++L D +SRKKR
Sbjct: 68 PLPMQKGQKSALQEDILKLSSLLQESCPVEVILWDERLSSAQAERMLKGDCGLSRKKRKG 127
Query: 135 KVDSIAAALILQEVLDRISFLES 157
K DSIAA LIL L+ L S
Sbjct: 128 KTDSIAATLILTSFLEHSPRLPS 150
>gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 146
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I + D GT+++G+AI +P P V K +LL + F++GL
Sbjct: 6 SKSIMAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLNM+ SE R F + + + + DERLTT A++ L + +
Sbjct: 66 PLNMDDSESELSTRARKFAR-RLRHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLS 124
Query: 136 VDSIAAALILQEV 148
DS AAAL++Q
Sbjct: 125 ADSFAAALLIQSW 137
>gi|42560803|ref|NP_975254.1| hypothetical protein MSC_0255 [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|313665149|ref|YP_004047020.1| RNAse YqgF [Mycoplasma leachii PG50]
gi|62900983|sp|Q6MTZ0|RUVX_MYCMS RecName: Full=Putative Holliday junction resolvase
gi|42492299|emb|CAE76896.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|301320708|gb|ADK69351.1| RNAse YqgF [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
gi|312949870|gb|ADR24466.1| RNAse YqgF [Mycoplasma leachii PG50]
Length = 143
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I ++D+G+K IGLA S + Q +L S++ N ++G P
Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLRQLESYLKKYNPTIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRI 133
NMN + G R + +D + DER TT A+ ILI N++R+K+
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIRIDERRTTKIAKNILIQANLTREKQK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ DS+AA LIL+ L+
Sbjct: 123 KYKDSLAAQLILELYLESR 141
>gi|237748807|ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
gi|229380169|gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13]
Length = 149
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
K I + D G KRIG AI + R A P + + ++ I
Sbjct: 16 KMNNTPGVILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEEWQPVK 75
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
I+GLP +G+E + F + + + + + DER ++ +L
Sbjct: 76 LIVGLPSYPDGTEHEMTRRCKRFAN-QLRGRFSLEIIMVDERYSS----SVLHFQ----- 125
Query: 131 KRIQKVDSIAAALILQEVLDR 151
R + D+ AAALILQ+ D
Sbjct: 126 -RGKADDAHAAALILQQYFDE 145
>gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM
16511]
gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM
16511]
Length = 130
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
IA++D+G KRIG+AIS P R P+ + R+ Q A EL F+ + ++GLP
Sbjct: 2 IAAVDVGLKRIGVAIS-PDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ E R FV +++ + + DE ++ A++ + R+KR ++DS
Sbjct: 61 GSSEE-EMERRIRHFVS-LLELPPQMEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDS 116
Query: 139 IAAALILQEVLDR 151
+AA +IL+ L+R
Sbjct: 117 LAAQIILERWLER 129
>gi|224282911|ref|ZP_03646233.1| Putative endonuclease for recombination [Bifidobacterium bifidum
NCIMB 41171]
Length = 145
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 25 GTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSE 83
G R+GLA+SDP FAHP + ++++ I E + ++GLPL ++G+E
Sbjct: 2 GDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQLDGTE 61
Query: 84 GPRVHSTRAFVHNMIDRKVY------------VPFVFWDERLTTVSAQQILIDMNVSRKK 131
G R + N+ R DERLTTVSA + L++ + ++
Sbjct: 62 GKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQLGSRR 121
Query: 132 RIQKVDSIAAALILQEVLD 150
VD +A +ILQ LD
Sbjct: 122 HRPVVDQQSAVVILQTALD 140
>gi|72382039|ref|YP_291394.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
NATL2A]
gi|146325589|sp|Q46LD7|RUVX_PROMT RecName: Full=Putative Holliday junction resolvase
gi|72001889|gb|AAZ57691.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str.
NATL2A]
Length = 144
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ S+D+G KRIG+A DP P + R + E + I
Sbjct: 4 PKPCSVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLIC 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G PL+MNG E + + + + + + +P F +E +TV A++ + +
Sbjct: 64 GNPLDMNGMETKQSIRCKKYG-IKLAKCLKLPLAFINEHCSTVEAKEKFSL----KNDKT 118
Query: 134 QKVDSIAAALILQEVL 149
++DS AAA++LQ+ L
Sbjct: 119 GRIDSAAAAILLQQWL 134
>gi|256384327|gb|ACU78897.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256385160|gb|ACU79729.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
str. GM12]
gi|296455329|gb|ADH21564.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 143
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I ++D+G+K IGLA S + Q +L S++ N + ++G P
Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFNQGLKQLDSYLKKYNPSIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRI 133
NMN + G R + +D + DER TT A+ ILI N++R+K+
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLDMYKNFNEDQIIKIDERRTTKIAKNILIQANLTREKQK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ DS+AA LIL+ L+
Sbjct: 123 KYKDSLAAQLILELYLESR 141
>gi|126696190|ref|YP_001091076.1| endonuclease [Prochlorococcus marinus str. MIT 9301]
gi|167012746|sp|A3PCK0|RUVX_PROM0 RecName: Full=Putative Holliday junction resolvase
gi|126543233|gb|ABO17475.1| Predicted endonuclease [Prochlorococcus marinus str. MIT 9301]
Length = 153
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I S+D+G+KRIGLA DP ++ P + R + Q + ++I N+ FI+
Sbjct: 6 PKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+PL+ G + + + ++ ++ +PF + +E +T + + +K +
Sbjct: 66 GIPLDEKGKMTTQAIDCKNYGQ-LLSNELKLPFSYVNEHSSTWESSERF----GIKKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS +A +IL++ ++ LE G
Sbjct: 121 GLIDSFSAKIILEQWIEEGPELEEIAG 147
>gi|34763054|ref|ZP_00144028.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|237741672|ref|ZP_04572153.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
4_1_13]
gi|256844996|ref|ZP_05550454.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_36A2]
gi|294785717|ref|ZP_06751005.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_27]
gi|27887280|gb|EAA24377.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|229429320|gb|EEO39532.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
4_1_13]
gi|256718555|gb|EEU32110.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_36A2]
gi|294487431|gb|EFG34793.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_27]
Length = 138
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D+G RIG+A SD A P + RKKV ++ + + ++G+
Sbjct: 1 MKRYIALDIGDVRIGVARSDIMGIIASPLETINRKKV-KSVKRIAEICKENDTNLIVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-KRIQ 134
P +++G E + R ++ + + + DER +TV A IL ++N + ++ +
Sbjct: 60 PKSLDGEEKRQAEKVREYIEKLKKEIENLEIIEIDERFSTVIADNILKELNKNGAIEKRK 119
Query: 135 KVDSIAAALILQEVLD 150
VD +AA++ILQ LD
Sbjct: 120 VVDKVAASIILQTYLD 135
>gi|15606654|ref|NP_214034.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
gi|6226434|sp|O67469|RUVX_AQUAE RecName: Full=Putative Holliday junction resolvase
gi|2983890|gb|AAC07442.1| hypothetical protein aq_1498 [Aquifex aeolicus VF5]
Length = 131
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D GTKR+GLAI D + P+ + + ++ + + I+GLP
Sbjct: 1 MKVLAVDYGTKRVGLAIGDEELKIVSPKGTV---SSKEAVKKIKEIVEKSRVGKVIVGLP 57
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G EG R + FV + + + WDER TT A + L + KK+ +
Sbjct: 58 LTPSGKEGQRAKLVKDFVEKLREELPNTEIILWDERWTTAEAMRRL--EGLPPKKKKELK 115
Query: 137 DSIAAALILQEVLDRI 152
D I+A +IL+E L+ +
Sbjct: 116 DVISAMIILEEYLNSV 131
>gi|78779183|ref|YP_397295.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9312]
gi|146325588|sp|Q31B86|RUVX_PROM9 RecName: Full=Putative Holliday junction resolvase
gi|78712682|gb|ABB49859.1| Holliday junction resolvase YqgF [Prochlorococcus marinus str. MIT
9312]
Length = 153
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I S D+G KRIGLA DP ++ P + R + + + + I N+ FI+
Sbjct: 6 PKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G P+ + ++ ++ +PF + +E +T + +K +
Sbjct: 66 GLPLDEKGKMTPQAIDCMNYGQ-LLSNELKLPFSYVNEHSSTWESSNRF----GIKKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS AA +IL++ + LE G
Sbjct: 121 GLIDSFAAKVILEQWIKEGPELEELAG 147
>gi|331703303|ref|YP_004399990.1| Holliday junction resolvase [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801858|emb|CBW54011.1| Conserved hypothetical protein, probable Holliday junction
resolvase [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 143
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I ++D+G+K IGLA S + Q +L S++ N + ++G P
Sbjct: 3 QSIIALDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLDSYLKKYNPSIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVSRKKRI 133
NMN + G R + +D + DER TT A+ ILI N++R+K+
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLDMYKNFNKDQIIKIDERRTTKIAKNILIQANLTREKQK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ DS+AA LIL+ L+
Sbjct: 123 KYKDSLAAQLILELYLESR 141
>gi|31544327|ref|NP_852905.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(low)]
gi|62901003|sp|Q7NBY7|RUVX_MYCGA RecName: Full=Putative Holliday junction resolvase
gi|31541171|gb|AAP56473.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(low)]
gi|284930366|gb|ADC30305.1| putative Holliday junction resolvase [Mycoplasma gallisepticum str.
R(high)]
Length = 142
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIA-AFIIGLP 76
++D+G++ +G+A D + A P + Q EL + F+IG+P
Sbjct: 4 VALDVGSRTLGIATGDGEFKIASPYCVISFNQYDFRQCLAELKEKTASFFYDFKFVIGMP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
N++ ++ F+ ++ + +DE T++ A Q+LID + KKR +K+
Sbjct: 64 KNIDQTKSSTTEMVENFIE-LLKANYKNEVIIYDESYTSIIADQLLIDNQIKAKKRKEKI 122
Query: 137 DSIAAALILQEVLDRISF 154
D +AA +ILQ D +
Sbjct: 123 DKLAAFVILQSFFDDDRY 140
>gi|83319719|ref|YP_424202.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|146325579|sp|Q2SSR1|RUVX_MYCCT RecName: Full=Putative Holliday junction resolvase
gi|83283605|gb|ABC01537.1| holliday junction resolvase, putative [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 143
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q I + D+G+K IGLA S + Q +L ++ N + ++G P
Sbjct: 3 QSIIAFDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQLELYLKKYNPSIIVVGYP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRK---VYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
NMN + G R + +D + DER TT A+ ILI N++R+K+
Sbjct: 63 KNMNNTIGERAEMVDYVIEMFLDMYKSFNKDQIIKVDERRTTKIAKNILIQANLTREKQK 122
Query: 134 QKVDSIAAALILQEVLDRI 152
+ DS+AA LIL+ L+
Sbjct: 123 KYKDSLAAQLILELYLESR 141
>gi|319940853|ref|ZP_08015192.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis
3_1_45B]
gi|319805735|gb|EFW02516.1| Holliday junction resolvase YqgF [Sutterella wadsworthensis
3_1_45B]
Length = 141
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 12/141 (8%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENI 68
L L + + D G R G+A+ + R A P L + + ++
Sbjct: 5 LETFLSEPGTVLAFDFGLARTGVAVGNTVTRTAEPLVILDASTNESRWQSIEALMSEWKP 64
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
++G+P +G+ F + + ++ DER ++V Q
Sbjct: 65 KFLVVGVPRLGDGNPSTLTARCERFAR-QLGGRYHLRVFTVDERFSSVEVAQ-------- 115
Query: 129 RKKRIQKVDSIAAALILQEVL 149
+D AAA+IL++
Sbjct: 116 ---GRDHIDDRAAAVILEQFF 133
>gi|212716058|ref|ZP_03324186.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
16992]
gi|212661425|gb|EEB22000.1| hypothetical protein BIFCAT_00971 [Bifidobacterium catenulatum DSM
16992]
Length = 151
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
IDLG R+GLA+SDPG A+P V + E++ I E + I+GLPL
Sbjct: 3 WLGIDLGDARVGLALSDPGITLAYPAGNIQVYGDSFRALDEVVDVIEDELVDHVIVGLPL 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSAQQILIDM 125
++G EG R + N+ R DERLTTV+A L D
Sbjct: 63 LLSGEEGKSAKKARRWTVNLERRLRAAVEDDEYSLTQVPTIELVDERLTTVTAHHQLFDA 122
Query: 126 NVSRKKRIQKVDSIAAALILQEVLDRI 152
+ + VD +A +ILQ +DR
Sbjct: 123 QIGGHEHRPMVDQQSAVVILQTAIDRR 149
>gi|162447762|ref|YP_001620894.1| putative holliday junction resolvase [Acholeplasma laidlawii PG-8A]
gi|161985869|gb|ABX81518.1| predicted holliday junction resolvase [Acholeplasma laidlawii
PG-8A]
Length = 140
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG K +G+AIS+ G ++ + +LL + I ++GLP +M
Sbjct: 5 GLDLGEKSLGVAISESGIIASNLTTIRFKSEDYEDAVEQLLKLLNQYKIDCVVLGLPKHM 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
N G + F ++ K V + WDERL+T +A +IL D N K+ D +
Sbjct: 65 NNDIGLKGQMAIDF-KTLLASKSNVQVILWDERLSTKTALRILSDSNKKYDKQRNLKDEV 123
Query: 140 AAALILQEVLDRI 152
AA +ILQ L+
Sbjct: 124 AAQVILQNYLNSR 136
>gi|327482652|gb|AEA85962.1| Holliday junction resolvase-like protein [Pseudomonas stutzeri DSM
4166]
Length = 142
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + + D GTK+IG+A+ A L + ++ + + A +
Sbjct: 1 MSMPRLLLGFDYGTKQIGVAVGQVVTGQARELCVLKAQNGVPDWQQIEALLREWQPDALV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPLNM+GS F ++ + +P DERLTT A+ + R
Sbjct: 61 VGLPLNMDGSPSEMSARAEKFAR-RLNGRFNLPVHTHDERLTTFEAKGERLRQGQHGGYR 119
Query: 133 IQKVD 137
+ VD
Sbjct: 120 ERPVD 124
>gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
Length = 152
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID+G+ RIG+A SDP A P + R K + + I+GLP ++
Sbjct: 3 LGIDVGSVRIGVARSDPAGILATPLETVRRGKGD--LDRIAELVAEHEAVEVIVGLPTSL 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRK----VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G GP R F + R +DERLTTV+A+ L V K R Q
Sbjct: 61 SGRSGPAAAQARRFAEALAGRLSQLLPDGGVRLYDERLTTVTAEAELRRSGVRGKARRQV 120
Query: 136 VD 137
VD
Sbjct: 121 VD 122
>gi|183601534|ref|ZP_02962904.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683929|ref|YP_002470312.1| Holliday junction resolvase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190967|ref|YP_002968361.1| putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196373|ref|YP_002969928.1| putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219140|gb|EDT89781.1| possible endonuclease [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621579|gb|ACL29736.1| putative Holliday junction resolvase [Bifidobacterium animalis
subsp. lactis AD011]
gi|240249359|gb|ACS46299.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240250927|gb|ACS47866.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289178709|gb|ADC85955.1| Hypothetical cytosolic protein [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295793956|gb|ADG33491.1| Putative endonuclease for recombination [Bifidobacterium animalis
subsp. lactis V9]
Length = 163
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAA----- 70
+DLG R+G+A S+P R FA+P V Q ++L I +
Sbjct: 3 GIWLGLDLGNARVGVAASNPERSFAYPEGNIRVYGDYFQVFDDVLDLIEDKAEEGTPVTA 62
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDR------------KVYVPFVFWDERLTTVSA 118
IGLPL M+GS G + + ++ R V +F DERLTTV A
Sbjct: 63 IAIGLPLQMDGSAGSSAKKAQRWAKSLRRRLESEMEDQDSHIGVMPDIIFIDERLTTVDA 122
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ L D NVS K+ VD +A ILQ LDR
Sbjct: 123 HRRLFDANVSSKQHRAVVDQQSAVEILQTALDR 155
>gi|33519715|ref|NP_878547.1| Holliday junction resolvase-like protein [Candidatus Blochmannia
floridanus]
gi|62901014|sp|Q7VRG7|RUVX_BLOFL RecName: Full=Putative Holliday junction resolvase
gi|33504060|emb|CAD83321.1| putative endonuclease involved in recombination [Candidatus
Blochmannia floridanus]
Length = 142
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+K I + D GTK+IG+AI L K ++ I
Sbjct: 2 IKKIAIIMAFDFGTKKIGIAIGQKITGTTQSLEILPSKFGIPNWKKIEHIFNVWKPNKLI 61
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKK 131
+GLPL MNG+ ++ F + + + DER TT+ A+ I +K
Sbjct: 62 VGLPLKMNGNTQHITLLSKRFA-VQLTHRFKITVEMHDERFTTIEARSIYFQHFRYYYRK 120
Query: 132 RIQKVDSIAAALILQEVLDR 151
+ +DSIAA +IL+ L++
Sbjct: 121 KTTPIDSIAAEIILKSWLNQ 140
>gi|319795847|ref|YP_004157487.1| holliday junction resolvase yqgf [Variovorax paradoxus EPS]
gi|315598310|gb|ADU39376.1| Holliday junction resolvase YqgF [Variovorax paradoxus EPS]
Length = 141
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
Q + D G KR G+A + + A P+ + + ++ + I A +I
Sbjct: 14 PHFQTFLAFDFGLKRTGVASGNRLLQSATPQATIKAE-GDARFAQVEARIKEWQPDALVI 72
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+P + +G+ + F + + + DER +T A +S R
Sbjct: 73 GVPYHPDGAPHENTRRAQKFAR-QLRGRFNLQVFEVDERYSTTEA--------LSSGARD 123
Query: 134 QKVDSIAAALILQEVLDRIS 153
D+ +A +IL++ L +
Sbjct: 124 A--DAASACIILEQFLRSLP 141
>gi|328950126|ref|YP_004367461.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
14884]
gi|328450450|gb|AEB11351.1| Holliday junction resolvase [Marinithermus hydrothermalis DSM
14884]
Length = 141
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIGLA D RFA R +L R + + +F E ++GLP
Sbjct: 1 MKVVALDVGDARIGLAAGDTETRFAFGRGYLQRTSLEADVQAVAAFAAREGAQRVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +GS + V + R+ + DER TT AQ + + +++ ++
Sbjct: 61 LRTDGSLSAQAEKVLRLVEAL--RRAGLVVETVDERYTTQLAQARVRALPKRKRREKGRL 118
Query: 137 DSIAAALILQEVL 149
D AA IL+ L
Sbjct: 119 DEAAAVAILETYL 131
>gi|300784620|ref|YP_003764911.1| holliday junction resolvase [Amycolatopsis mediterranei U32]
gi|299794134|gb|ADJ44509.1| putative holliday junction resolvase [Amycolatopsis mediterranei
U32]
Length = 133
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALEL-LSFITTENIAAFIIGLPLNMNGSEGPRVHS 89
+A+SDP A P L R T L+ + +T + I+GLP + +GP
Sbjct: 1 MALSDPAPVLASPLVTLSRDATDDTDLDQLAALVTEHEVVEVIVGLPRTLANRQGPAAEL 60
Query: 90 TRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
A+ + R VP DERLTTV+A +IL V +K+ VD AA ILQ +
Sbjct: 61 AIAYSERLAGRIAPVPVRLGDERLTTVTASRILSQRGVKGRKQRAVVDQAAAVEILQAWI 120
Query: 150 DRISFLESSKG 160
D + + +G
Sbjct: 121 DAAAAHRAREG 131
>gi|319778591|ref|YP_004129504.1| Putative Holliday junction resolvase [Taylorella equigenitalis
MCE9]
gi|317108615|gb|ADU91361.1| Putative Holliday junction resolvase [Taylorella equigenitalis
MCE9]
Length = 151
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I + D G K+IG+A+ + + A P + V + ++I N ++GLP+
Sbjct: 13 TILAFDYGKKKIGVALGNSITKSARPLGIIHNDTVDARFEGVANYINEWNPDLLVVGLPI 72
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ G E +R F + + + +P DER ++V AQ+I D
Sbjct: 73 TLGGQEQEASRLSRKFAN-QLHGRFNLPVELIDERYSSVEAQEI-CHCGPDE-------D 123
Query: 138 SIAAALILQEVL 149
AAA+IL+
Sbjct: 124 HYAAAVILERFF 135
>gi|171463061|ref|YP_001797174.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|226731636|sp|B1XT83|RUVX_POLNS RecName: Full=Putative Holliday junction resolvase
gi|171192599|gb|ACB43560.1| Holliday junction resolvase YqgF [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 147
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 54/133 (40%), Gaps = 9/133 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GT+R+G+A+ + + P + ++ + ++G P +
Sbjct: 14 MAFDYGTRRVGVAVGNSVTKAGEPLKTIAAPNSDTLFKDIEQLLAEWQPNQLVVGHPTHP 73
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G+ F + + + +P + DER T+ +++ + + +D+
Sbjct: 74 DGAPHEMTAKAIRFGN-QLHGRFQLPVAWVDERYTS-----AVLEGD---AQMRDNLDAH 124
Query: 140 AAALILQEVLDRI 152
+A LIL++ +
Sbjct: 125 SATLILEQYFSEL 137
>gi|260062213|ref|YP_003195293.1| Holliday junction resolvase-like protein [Robiginitalea biformata
HTCC2501]
gi|88783775|gb|EAR14946.1| Holliday junction resolvase-like protein [Robiginitalea biformata
HTCC2501]
Length = 132
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D G KR G+A++DP + A + + L S++ E + +IG P M+ S
Sbjct: 2 DYGQKRTGIAVTDPLQMIASGLTTVQ---TPELLDFLESYMGEEQVERIVIGEPRRMDNS 58
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV--SRKKRIQKVDSIA 140
R+F+ + R +P DER ++ A + +I+ + +++ VD I+
Sbjct: 59 PSGIEAEIRSFIERIKKRFPDLPLSRQDERFSSQMAVRAMIEGGMKKKKRRDKAAVDKIS 118
Query: 141 AALILQEVL 149
A LILQ L
Sbjct: 119 ATLILQSYL 127
>gi|148244218|ref|YP_001218912.1| hypothetical protein COSY_0050 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326045|dbj|BAF61188.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 142
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
D+GTKR G+AI++ A K + +EL I + NI FI+GLP
Sbjct: 5 TYLGFDIGTKRTGVAIANSLTMRATGIAVIKHHKDNSTNWVELDEVINSHNIKLFIVGLP 64
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ G E ++F + + + F DE L++ A+++L + + V
Sbjct: 65 FDKQGKEQIMTFIAKSFGK-KLKNRYQIEVEFIDEYLSSNEAKKLLKYNHHHHNAQRGNV 123
Query: 137 DSIAAALILQEVLDRISF 154
D ++ LILQ L+ F
Sbjct: 124 DKQSSQLILQTWLNEKKF 141
>gi|120609602|ref|YP_969280.1| Holliday junction resolvase-like protein [Acidovorax citrulli
AAC00-1]
gi|120588066|gb|ABM31506.1| Holliday junction resolvase YqgF [Acidovorax citrulli AAC00-1]
Length = 150
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + + + + A ++G+P
Sbjct: 25 QSFLAFDFGAKRTGVAVGSRLLRAASPQATIRAEGADARFAAVAERLREWQPDALVVGVP 84
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + + +P DER +T A +
Sbjct: 85 YHPDGAAHENTARALKFAR-QLRGRFGLPVFEVDERYSTTEAHAGGAKDADAA------- 136
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L ++
Sbjct: 137 ---SACIILEQFLRQLP 150
>gi|328676957|gb|AEB27827.1| Putative Holliday junction resolvase [Francisella cf. novicida Fx1]
Length = 136
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F I ++ +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKAAKDFAK-EIQQRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|15595601|ref|NP_249095.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PAO1]
gi|107099390|ref|ZP_01363308.1| hypothetical protein PaerPA_01000402 [Pseudomonas aeruginosa PACS2]
gi|116054135|ref|YP_788578.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889146|ref|YP_002438010.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
LESB58]
gi|254237361|ref|ZP_04930684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243504|ref|ZP_04936826.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296386903|ref|ZP_06876402.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PAb1]
gi|313111974|ref|ZP_07797762.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
gi|32130066|sp|Q9I699|RUVX_PSEAE RecName: Full=Putative Holliday junction resolvase
gi|122261724|sp|Q02U08|RUVX_PSEAB RecName: Full=Putative Holliday junction resolvase
gi|226731640|sp|B7V3Z1|RUVX_PSEA8 RecName: Full=Putative Holliday junction resolvase
gi|9946258|gb|AAG03793.1|AE004477_10 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115589356|gb|ABJ15371.1| putative ribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169292|gb|EAZ54803.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196882|gb|EAZ60945.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769369|emb|CAW25129.1| putative ribonuclease [Pseudomonas aeruginosa LESB58]
gi|310884264|gb|EFQ42858.1| putative ribonuclease [Pseudomonas aeruginosa 39016]
Length = 144
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ S KP + + D GT++IG+A+ A L + + + I
Sbjct: 1 MASDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++GLPLNM+GS F ++ + +P DERLTT +A+ +
Sbjct: 61 AIVVGLPLNMDGSPSEMSERAEKFGR-RLNGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119
Query: 130 KKRIQKVD 137
R + VD
Sbjct: 120 GYRERPVD 127
>gi|152988020|ref|YP_001345899.1| Holliday junction resolvase-like protein [Pseudomonas aeruginosa
PA7]
gi|167012751|sp|A6UYL4|RUVX_PSEA7 RecName: Full=Putative Holliday junction resolvase
gi|150963178|gb|ABR85203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 144
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ + KP + + D GT++IG+A+ A L + + + I
Sbjct: 1 MAADKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPD 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A ++GLPLNM+GS F ++ + +P DERLTT +A+ +
Sbjct: 61 AIVVGLPLNMDGSPSEMSERAEKFGR-RLNGRFNLPVFTHDERLTTYAAKGERLAQGQRD 119
Query: 130 KKRIQKVD 137
R + VD
Sbjct: 120 GYRERPVD 127
>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica]
Length = 170
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTE 66
L + + +D+G K +G+A+SD + A P L+RKK + + S I+
Sbjct: 14 LKANTLERGRLLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAADFQSLISEL 73
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID--RKVYVPFVFWDERLTTVSAQQILID 124
++ FI+G P + P + F+ ++ + + + +WDE T+ + + +L
Sbjct: 74 SLVGFIVGYPFDRQKG-TPDAVQVKLFIDDLSKTRKLEGLKYTYWDEGFTSKNVELLLKP 132
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+N+ + +D AA ILQ LD ++
Sbjct: 133 LNLPPVQSKTIMDKFAAVGILQGYLDYVN 161
>gi|326315675|ref|YP_004233347.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372511|gb|ADX44780.1| Holliday junction resolvase YqgF [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 150
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ + + + + A ++G+P
Sbjct: 25 QSFLAFDFGAKRTGVAVGTRMLRTATPQATIRAEGADARFAAVAERLRDWQPDALVVGVP 84
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + + +P DER +T A +
Sbjct: 85 YHPDGAAHENTARALKFAR-QLRGRFGLPVFEVDERYSTTEAHAGGAKDADAA------- 136
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L ++
Sbjct: 137 ---SACIILEQFLRQLP 150
>gi|269114906|ref|YP_003302669.1| Putative holliday junction resolvase [Mycoplasma hominis]
gi|268322531|emb|CAX37266.1| Putative Holliday junction resolvase [Mycoplasma hominis ATCC
23114]
Length = 144
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--KVTQTALELLSFITTENIAA---- 70
I ++DLGTK G AISDP A + ++L ++
Sbjct: 1 MRILALDLGTKSCGFAISDPNNIIASGLENFRFELNHFNLVIEKVLHYLNKSEYQGSIGT 60
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G PL M+ S+ R + F + + V +P VF DER +T+ AQ+IL + K
Sbjct: 61 IVLGYPLRMDLSKSQRTYMVERFGE-RLKKVVDIPVVFQDERQSTIGAQEILQSAGWNTK 119
Query: 131 KRIQKVDSIAAALILQEVLDRISF 154
K K DS+AA LIL++ L I +
Sbjct: 120 KSKSKKDSLAAQLILEDYLKGIKY 143
>gi|89256536|ref|YP_513898.1| hypothetical protein FTL_1215 [Francisella tularensis subsp.
holarctica LVS]
gi|115314967|ref|YP_763690.1| hypothetical protein FTH_1192 [Francisella tularensis subsp.
holarctica OSU18]
gi|156502651|ref|YP_001428716.1| hypothetical protein FTA_1285 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010660|ref|ZP_02275591.1| hypothetical protein Ftulh_08094 [Francisella tularensis subsp.
holarctica FSC200]
gi|254367860|ref|ZP_04983880.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
holarctica 257]
gi|254369476|ref|ZP_04985488.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
holarctica FSC022]
gi|290952899|ref|ZP_06557520.1| putative Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|295313899|ref|ZP_06804465.1| putative Holliday junction resolvase [Francisella tularensis subsp.
holarctica URFT1]
gi|122325020|sp|Q0BLI1|RUVX_FRATO RecName: Full=Putative Holliday junction resolvase
gi|146325574|sp|Q2A304|RUVX_FRATH RecName: Full=Putative Holliday junction resolvase
gi|167012724|sp|A7NCQ7|RUVX_FRATF RecName: Full=Putative Holliday junction resolvase
gi|89144367|emb|CAJ79654.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129866|gb|ABI83053.1| crossover junction endodeoxyribonuclease [Francisella tularensis
subsp. holarctica OSU18]
gi|134253670|gb|EBA52764.1| hypothetical protein FTHG_01151 [Francisella tularensis subsp.
holarctica 257]
gi|156253254|gb|ABU61760.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122426|gb|EDO66566.1| hypothetical protein FTAG_00463 [Francisella tularensis subsp.
holarctica FSC022]
Length = 136
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|294621483|ref|ZP_06700651.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|291598924|gb|EFF29973.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 124
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT--ALELLSFITTENIAAFIIG 74
+ +D+G+K +G+A+SDP A + + + L + + F++G
Sbjct: 1 MRVMGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRI 133
LP NMN S GPR ++ ++ I +P + DERLTTV A+++L++ N SR KR
Sbjct: 61 LPKNMNNSIGPRAEASMSYGE-KIKELFSLPVDYQDERLTTVQAERMLVEQANTSRAKRK 119
Query: 134 Q 134
+
Sbjct: 120 K 120
>gi|134301891|ref|YP_001121860.1| hypothetical protein FTW_0892 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|167012726|sp|A4IXT8|RUVX_FRATW RecName: Full=Putative Holliday junction resolvase
gi|134049668|gb|ABO46739.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 136
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVETYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|332183969|gb|AEE26223.1| Putative Holliday junction resolvase [Francisella cf. novicida
3523]
Length = 136
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + I+GLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIVGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F I + +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQDFETDITKAAKDFAK-EIQHRYQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|118497459|ref|YP_898509.1| hypothetical protein FTN_0867 [Francisella tularensis subsp.
novicida U112]
gi|195536151|ref|ZP_03079158.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|167012725|sp|A0Q690|RUVX_FRATN RecName: Full=Putative Holliday junction resolvase
gi|118423365|gb|ABK89755.1| conserved protein of unknown function [Francisella novicida U112]
gi|194372628|gb|EDX27339.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
Length = 136
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F + R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKAAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|167627980|ref|YP_001678480.1| hypothetical protein Fphi_1753 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|241668534|ref|ZP_04756112.1| hypothetical protein FphipA2_07196 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877069|ref|ZP_05249779.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|189046097|sp|B0U0E9|RUVX_FRAP2 RecName: Full=Putative Holliday junction resolvase
gi|167597981|gb|ABZ87979.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254843090|gb|EET21504.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 136
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIGLA + A P + +EL + N + +IGLP
Sbjct: 3 QSLIAIDYGKARIGLASGQMITKTATPIGTVEAYDGVPNWIELDKIVKRWNPSDIVIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F + +R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQDFETDITKAAKDFAKEVKERYK-RNVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|260220095|emb|CBA27290.1| Putative Holliday junction resolvase [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 147
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G KR G+A+ + R A P+ + + + + + A +IG+P
Sbjct: 24 TFIAFDFGLKRTGVAVGNRLMRTAQPQGSIHAE-GNARFDGVAAKLKEWQPDAIVIGVPY 82
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+ +G+ + F + + + DER +T A I D
Sbjct: 83 HPDGAPHENTARAKKFGR-QLQGRFGLQVFEVDERYSTTEA----IASGAKDA------D 131
Query: 138 SIAAALILQEVLDRIS 153
+++A +IL++ L +
Sbjct: 132 AMSACIILEQFLRNLP 147
>gi|124025538|ref|YP_001014654.1| endonuclease [Prochlorococcus marinus str. NATL1A]
gi|167012747|sp|A2C1M9|RUVX_PROM1 RecName: Full=Putative Holliday junction resolvase
gi|123960606|gb|ABM75389.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. NATL1A]
Length = 144
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ S+D+G KRIG+A DP P + R + E + I
Sbjct: 4 PKPCSVLSLDIGDKRIGIAGCDPLGISITHLPAIFRDSFEKDLKEFEKICFDRRVEGLIC 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G PL+MNG E + + + + + + +P F +E +T+ A++ + +
Sbjct: 64 GNPLDMNGMETKQSIRCKKYG-IKLAKCLKLPLAFINEHCSTLEAKEKFSL----KNDKT 118
Query: 134 QKVDSIAAALILQEVL 149
++DS AAA++LQ+ L
Sbjct: 119 GRLDSAAAAILLQQWL 134
>gi|284044489|ref|YP_003394829.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
gi|283948710|gb|ADB51454.1| Holliday junction resolvase YqgF [Conexibacter woesei DSM 14684]
Length = 133
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D G+ R G A+SDP A P + R + L++ + + ++GLP
Sbjct: 1 MRVLALDYGSARCGCALSDPTGTLATPIAHVERPGTRKGMARLVALVRDREVDRVVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
L ++G++ + RAF + + +P +DER TTV A+++ +
Sbjct: 61 LGLSGADTAQTAEVRAFAQRLGEALGEQIPIDLYDERFTTVIAERV---------GGRES 111
Query: 136 VDSIAAALILQEVL 149
DS AAA++L+ L
Sbjct: 112 EDSRAAAVLLEGWL 125
>gi|187931684|ref|YP_001891668.1| hypothetical protein FTM_0962 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|226725524|sp|B2SGN1|RUVX_FRATM RecName: Full=Putative Holliday junction resolvase
gi|187712593|gb|ACD30890.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 136
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + R +E +T A+ L + S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEF-KSKKISHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|208779255|ref|ZP_03246601.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254374279|ref|ZP_04989761.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151571999|gb|EDN37653.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|208745055|gb|EDZ91353.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 136
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG+A + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E + + F + R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQDFETDITKAAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|313680710|ref|YP_004058449.1| holliday junction resolvase yqgf [Oceanithermus profundus DSM
14977]
gi|313153425|gb|ADR37276.1| Holliday junction resolvase YqgF [Oceanithermus profundus DSM
14977]
Length = 133
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D+G RIG+A+++ GR A R ++ R+ + + E ++GLP
Sbjct: 2 LGLDVGDARIGVAVAEEGRPLAFGRGWIERRDLEDDVARVCELARREEAGRVVVGLPRRT 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G EG + + + F DER TT A Q L + ++++ ++D
Sbjct: 62 GGEEG--AQAAKVRAFAAALEAAGLEVRFVDERFTTRVAAQALAHLPRKKRQQKGRLDEA 119
Query: 140 AAALILQEVLDR 151
AA IL+ L+R
Sbjct: 120 AAVAILETYLER 131
>gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 141
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 7/138 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + ++D+G K+IG+A+SDP A+P + RK +T +LL I ++ IIG+
Sbjct: 1 MKRVMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGI 60
Query: 76 PLNMNGSEGPRVHSTRAFV----HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
P++ G E + F + +R + VF DE +++ A+++ + +
Sbjct: 61 PISSEGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLGKTE-- 118
Query: 132 RIQKVDSIAAALILQEVL 149
+++D IAAAL+L+E L
Sbjct: 119 -KEEIDDIAAALMLKEWL 135
>gi|297571414|ref|YP_003697188.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
20595]
gi|296931761|gb|ADH92569.1| Holliday junction resolvase YqgF [Arcanobacterium haemolyticum DSM
20595]
Length = 153
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 32 AISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
A D A P R++ ++ + + I+GLP NM+GSEG + R
Sbjct: 19 ARCDTAGILATPVATYRRERDD--FSSVIELVREADALEVIVGLPRNMDGSEGKSAKNAR 76
Query: 92 AFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+ + R V DERLTTVSA Q+L + VD +AA +IL+ L
Sbjct: 77 RWAKRLARRIAPVHVRMVDERLTTVSAHQMLHESGRKEINHRSVVDQVAAVIILESAL 134
>gi|91070313|gb|ABE11231.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-88D1]
Length = 153
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I S+D+GTKRIGLA DP ++ P + R + Q + ++I N+ FI+
Sbjct: 6 PKPKSILSLDIGTKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINELNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G+PL+ G + + + ++ R++ +PF + +E +T + +K +
Sbjct: 66 GIPLDEEGQMTTQAIDCKKYGQ-LLSRELMLPFSYVNEHSSTWESSYRF----GIKKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS +A +IL++ + LE G
Sbjct: 121 GLIDSFSAKIILEQWIAEGPELEEIAG 147
>gi|15835074|ref|NP_296833.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
gi|14195475|sp|Q9PKK9|RUVX_CHLMU RecName: Full=Putative Holliday junction resolvase
gi|7190501|gb|AAF39309.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 148
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENI 68
+ S+K + +D G KRIGLA + P + TA L++ I +
Sbjct: 1 MNSMKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAV 60
Query: 69 AAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNV 127
+ G PL M S V S + ++ + + WDERL++ A+++L D +
Sbjct: 61 TTVVFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGL 120
Query: 128 SRKKRIQKVDSIAAALILQEVLDRI 152
SRK+R DS+AA LIL LD
Sbjct: 121 SRKQRKNSSDSLAATLILSSFLDSR 145
>gi|239817577|ref|YP_002946487.1| Holliday junction resolvase-like protein [Variovorax paradoxus
S110]
gi|239804154|gb|ACS21221.1| Holliday junction resolvase YqgF [Variovorax paradoxus S110]
Length = 153
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A + A P+ + + ++ + I A ++G+P
Sbjct: 29 QSFLAFDFGLKRTGVASGNRLLGAATPQATIKAE-GDARFAQVEARIKEWQPDALVVGVP 87
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ + F + + + DER +T A +
Sbjct: 88 YHPDGAPHENTRRAQKFAR-QLRGRFNLQVFEVDERYSTTEA----LASGARDA------ 136
Query: 137 DSIAAALILQEVLDRIS 153
D+ +A +IL++ L I
Sbjct: 137 DAASACIILEQFLRSIP 153
>gi|254372859|ref|ZP_04988348.1| hypothetical protein FTCG_00429 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570586|gb|EDN36240.1| hypothetical protein FTCG_00429 [Francisella novicida GA99-3549]
Length = 138
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G RIG+A + A P + +EL I N + IIGLPL+
Sbjct: 7 LIAIDYGKARIGIASGQMITKTATPIGTVEAYDGVPNWIELDKIIKRWNPSDIIIGLPLD 66
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
E + + F + R +E +T A+ L ++ S+K KVD+
Sbjct: 67 TQDFETDITKAAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKVDA 124
Query: 139 IAAALILQEVL 149
+AA +IL+ +
Sbjct: 125 LAACVILETWM 135
>gi|269795076|ref|YP_003314531.1| hypothetical protein Sked_17700 [Sanguibacter keddieii DSM 10542]
gi|269097261|gb|ACZ21697.1| conserved hypothetical protein TIGR00250 [Sanguibacter keddieii DSM
10542]
Length = 167
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK---------KVTQTALELLS 61
++L+ +D+G+ R+G+A+SDP A P L R V L
Sbjct: 5 QALERGAR-LCVDVGSVRVGVAVSDPDGLIATPVETLPRDVVTAAKNPAAVPTDLAALAE 63
Query: 62 FITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ + +GLP +++G+EG S RA+ + VP DER++TV+A Q
Sbjct: 64 QVVERGVKVVYVGLPRHLSGAEGTASASARAYAVQVARLVAPVPVRLVDERMSTVTAHQA 123
Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L + +K VD +AA +ILQ LD
Sbjct: 124 LHASGRAGRKHRAVVDQVAAVVILQSALD 152
>gi|299470299|emb|CBN78349.1| Holliday junction resolvase-like protein [Ectocarpus siliculosus]
Length = 258
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL------ELLSFITTEN 67
P+ +D+ G+A+SD + A P + R++ T+ +L + +
Sbjct: 95 NRGSPLVGLDVAPSNFGVAVSDETKTLAFPLTRVPRRQSTKKLDPALVIGKLREIVEDCS 154
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHN-MIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
++G PL+ +G + F+ + KV +P +DER+T+V A+ IL D
Sbjct: 155 ACGLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDG 214
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
+ +K ++ D AA +ILQ LD
Sbjct: 215 L-GRKIAEREDETAAMVILQGFLDS 238
>gi|56708078|ref|YP_169974.1| hypothetical protein FTT_0986 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670549|ref|YP_667106.1| hypothetical protein FTF0986 [Francisella tularensis subsp.
tularensis FSC198]
gi|224457170|ref|ZP_03665643.1| hypothetical protein FtultM_05530 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370563|ref|ZP_04986568.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874882|ref|ZP_05247592.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|62900911|sp|Q5NG68|RUVX_FRATT RecName: Full=Putative Holliday junction resolvase
gi|118597210|sp|Q14HM0|RUVX_FRAT1 RecName: Full=Putative Holliday junction resolvase
gi|56604570|emb|CAG45619.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320882|emb|CAL09002.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568806|gb|EDN34460.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254840881|gb|EET19317.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159278|gb|ADA78669.1| hypothetical protein NE061598_05655 [Francisella tularensis subsp.
tularensis NE061598]
Length = 136
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG++ + A P + +EL I N + IIGLP
Sbjct: 3 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 62
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + R +E +T A+ L ++ S+K KV
Sbjct: 63 LDTQNFETDITKSAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 120
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 121 DALAACVILETWM 133
>gi|123966025|ref|YP_001011106.1| endonuclease [Prochlorococcus marinus str. MIT 9515]
gi|167012749|sp|A2BW38|RUVX_PROM5 RecName: Full=Putative Holliday junction resolvase
gi|123200391|gb|ABM71999.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9515]
Length = 151
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++ I S+D+GTKRIGLA D + P L R+K + S I N+ FI+
Sbjct: 6 PKSKSILSLDIGTKRIGLAYCDSLFITVNILPALRREKNKNEFKTIKSHIKKLNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + + ++ +PF F +E +T ++ V +K +
Sbjct: 66 GLPLDDKGRMTSQAFDCKTYGEY-LFNELKLPFSFVNEHSSTWESENRF---GV-KKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS++A +IL++ + L+ G
Sbjct: 121 GLIDSLSAKVILEQWIQEGPELKELMG 147
>gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum]
Length = 171
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTEN 67
+ K + +D+G K +GLA+SD + A P LVRKK + + S ++ +
Sbjct: 15 KTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAADFKSLVSKYS 74
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI--DRKVYVPFVFWDERLTTVSAQQILIDM 125
+ F+IGLP + + + F+ N+ + + + +W+E T+ + + ++ +
Sbjct: 75 LKGFVIGLPFDRH-LVSSDAVKVKVFIDNLRRTNMFDGLKYTYWNECFTSKNVEILIKPL 133
Query: 126 NVSRK-KRIQKVDSIAAALILQEVLDRI 152
N++ +D AA ILQ LD +
Sbjct: 134 NLNHPVHSKTMLDKFAAVGILQGYLDYV 161
>gi|62263115|gb|AAX78128.1| unknown protein [synthetic construct]
Length = 184
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + +ID G RIG++ + A P + +EL I N + IIGLP
Sbjct: 42 QSLIAIDYGKARIGISSGQMITKTATPIGTVEAYDGVPNWIELDKIIKCWNPSDIIIGLP 101
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ E S + F + R +E +T A+ L ++ S+K KV
Sbjct: 102 LDTQNFETDITKSAKDFAKEVQQR-YQRKVHLINEAYSTREARWRLEEV-KSKKVSHIKV 159
Query: 137 DSIAAALILQEVL 149
D++AA +IL+ +
Sbjct: 160 DALAACVILETWM 172
>gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45]
gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45]
Length = 146
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFI 72
S DLGTK G AISD A+ + ++ I I AF+
Sbjct: 1 MRKLSFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVKEIIKMYQNSIDAFV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL NGS+ R F + + + DE +T+ AQ+IL D +S KK
Sbjct: 61 LGYPLRSNGSKSERTVMVDNFATLLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKT 120
Query: 133 IQKVDSIAAALILQEVLDR 151
K D+++A +IL + L
Sbjct: 121 KSKKDTVSAVIILNDFLQY 139
>gi|241764785|ref|ZP_04762793.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN]
gi|241365715|gb|EER60411.1| Holliday junction resolvase YqgF [Acidovorax delafieldii 2AN]
Length = 143
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A + A P+P + + ++ I A +IG+P
Sbjct: 19 QTFLAFDFGLKRTGVATGSRLLKSATPQPTIKAE-GDARFAQVAQRIKEWQPDALVIGVP 77
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + + + DER +T A I
Sbjct: 78 YHPDGASHENTERALKFGR-QLRGRFGLQVFEVDERYSTTEA----IASGAKDA------ 126
Query: 137 DSIAAALILQEVLDRIS 153
D+ +A +IL++ L +
Sbjct: 127 DAASACIILEQFLRNLP 143
>gi|148377681|ref|YP_001256557.1| putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
gi|259495708|sp|A5IYK4|RUVX_MYCAP RecName: Full=Putative Holliday junction resolvase
gi|148291727|emb|CAL59113.1| Putative Holliday junction resolvase [Mycoplasma agalactiae PG2]
Length = 146
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTEN--IAAFI 72
S DLGTK G AISD A+ + +++ I I AF+
Sbjct: 1 MRKLSFDLGTKTCGFAISDILEISANALETIRFVENDFNAVIVKVKEIIKMYQNSIDAFV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL NGS+ R F + + + DE +T+ AQ+IL D +S KK
Sbjct: 61 LGYPLRSNGSKSERTMMVDNFAILLANEFPGINIYLVDEYGSTIKAQRILKDAKLSNKKT 120
Query: 133 IQKVDSIAAALILQEVLDR 151
K D+++A +IL + L
Sbjct: 121 KSKKDTVSAVIILNDFLQY 139
>gi|148927755|ref|ZP_01811189.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
GTL1]
gi|147886898|gb|EDK72434.1| Holliday junction resolvase YqgF [candidate division TM7 genomosp.
GTL1]
Length = 138
Score = 96.9 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ ++D+GTKRIG+A +D RF P L + L I + I+
Sbjct: 3 NNVHSVIALDVGTKRIGIAHADTAVRFPVPYGTLEVDGLE--IERLREIIAELEPSLIIV 60
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
G P N G + + F + + +F DE LT+V A++ L ++
Sbjct: 61 GYPRNQQGEPTAQTGVVKEFAQKL--EPFQIDILFQDESLTSVLAEKYLQSQ--NKPYTK 116
Query: 134 QKVDSIAAALILQEVLDR 151
+D+ AAA+IL + L+
Sbjct: 117 SDIDAHAAAIILGDYLEE 134
>gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2]
gi|32130033|sp|Q8EUR7|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase
gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
Length = 142
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N I +ID GTK IG AI+D P ++L + ENI +IG
Sbjct: 5 NSKILAIDFGTKIIGTAINDINLNLCLPY--CEITNNELKFKKILEIVEEENIKEIVIGF 62
Query: 76 PLNMNGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
P N R F + + + + F+DE +T S+++ L++ NV K
Sbjct: 63 PKTQNSYVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTSKLK 122
Query: 134 QKVDSIAAALILQEVL 149
+ D IAA++IL+ L
Sbjct: 123 KNKDMIAASIILENYL 138
>gi|206895527|ref|YP_002247114.1| hypothetical protein COPRO5265_0767 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738144|gb|ACI17222.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM
5265]
Length = 137
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G KRIG+A SD +A P L + + L I ++GLP N
Sbjct: 2 IVAVDFGLKRIGMARSDDSETWAFPHKTLEGNDLETKLIIELKKIGPR---VVVLGLPRN 58
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+EG + RA + V FWDERLT+ + K KVD
Sbjct: 59 MDGTEGEMAVAVRALGQRL--EDVGFTVDFWDERLTSRLVSRQDPRSLKKAIKDKGKVDL 116
Query: 139 IAAALILQEVLDRISFLES 157
++A LILQE ++
Sbjct: 117 MSAVLILQEYINARRRTNE 135
>gi|291320345|ref|YP_003515607.1| putative Holliday junction resolvase [Mycoplasma agalactiae]
gi|290752678|emb|CBH40651.1| Putative Holliday junction resolvase [Mycoplasma agalactiae]
Length = 146
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTEN--IAAFI 72
+ DLGTK G AISD A+ ++ +I I AF+
Sbjct: 1 MRKLAFDLGTKTCGFAISDILEISANAIETIYFSENDFNAVINKVKEYIKQYQNSIDAFV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G PL NG++ R F + + DE +T+ AQ+IL D+ S KK
Sbjct: 61 LGYPLRSNGTKSERTLMVDDFAKLLALNFSNISIYLVDEYGSTIKAQRILKDVKFSNKKT 120
Query: 133 IQKVDSIAAALILQEVLDR 151
K D+++A +IL + L
Sbjct: 121 KSKKDTLSAVIILNDFLQY 139
>gi|15829027|ref|NP_326387.1| hypothetical protein MYPU_5560 [Mycoplasma pulmonis UAB CTIP]
gi|32130058|sp|Q98Q13|RUVX_MYCPU RecName: Full=Putative Holliday junction resolvase
gi|14089971|emb|CAC13729.1| conserved hypothetical protein [Mycoplasma pulmonis]
Length = 146
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ ++DLGTK G AISDP F + +L +
Sbjct: 1 MAKVMRKIALDLGTKSCGFAISDPISNSFAIPLENFFFEENNFKKVINKLKHYEKKYEFD 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
I+G PL M G+ R F ++ + V DERL+TV A+ +L + N+S+
Sbjct: 61 TIILGYPLRMTGTRSERSIMVEEF-EKLLRKTFSQRIVLVDERLSTVKAKAMLKETNISQ 119
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
K +K DS+AAAL+L L+
Sbjct: 120 SKIKEKKDSMAAALLLNYYLNN 141
>gi|116074750|ref|ZP_01472011.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
gi|116067972|gb|EAU73725.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9916]
Length = 157
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + S+D+G KRIGLA DP P P + R + Q L + TT + A ++
Sbjct: 4 PKPRSVLSLDVGRKRIGLAGCDPLGISVRPLPAIRRSRFDQDLEHLRALCTTRQVDALVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + + + +P + +E ++ +A + R
Sbjct: 64 GLPLDDKGQRTAQAEHCERYGR-RLAQTLALPLAWVNEHSSSWAAGESRNLHG----DRS 118
Query: 134 QKVDSIAAALILQEVL 149
++DS AAAL+L++ L
Sbjct: 119 GRLDSEAAALLLEQWL 134
>gi|270285241|ref|ZP_06194635.1| Holliday junction resolvase-like protein [Chlamydia muridarum Nigg]
gi|270289260|ref|ZP_06195562.1| Holliday junction resolvase-like protein [Chlamydia muridarum
Weiss]
gi|301336637|ref|ZP_07224839.1| Holliday junction resolvase-like protein [Chlamydia muridarum
MopnTet14]
Length = 145
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 2/142 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPR-PFLVRKKVTQTALELLSFITTENIAAF 71
+K + +D G KRIGLA + P + TA L++ I +
Sbjct: 1 MKQKEAFLGVDYGKKRIGLAFASAPLLITLPIGSINTCSSLALTAQALITIIKERAVTTV 60
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-DMNVSRK 130
+ G PL M S V S + ++ + + WDERL++ A+++L D +SRK
Sbjct: 61 VFGNPLPMQKSYASSVQSEIQELAALVRDMTSLEVILWDERLSSAQAERMLKNDCGLSRK 120
Query: 131 KRIQKVDSIAAALILQEVLDRI 152
+R DS+AA LIL LD
Sbjct: 121 QRKNSSDSLAATLILSSFLDSR 142
>gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
Length = 136
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIGLA+ + G +A R +LVRK + L +F E F++GLP
Sbjct: 1 MRVVALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEALAAFAERERAERFVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G + +A V M +R + DER TT Q L ++ K+
Sbjct: 61 LRTDGRPSAQAERVQALVEAMRER--GMQLELLDERYTTKLGQNRLKHAPKRIRQEKGKL 118
Query: 137 DSIAAALILQEVLDRI 152
D AA +L+ L R+
Sbjct: 119 DEAAAIALLESYLARV 134
>gi|270307497|ref|YP_003329555.1| Holliday junction resolvase [Dehalococcoides sp. VS]
gi|270153389|gb|ACZ61227.1| Holliday junction resolvase [Dehalococcoides sp. VS]
Length = 133
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G K IG+A+SDP R A P L R +T + + + T ++GLP+++NG+ G
Sbjct: 2 GDKWIGVALSDPLRILASPLVILRRDDDGKTVENIEALVKTHQPDLLVVGLPVSLNGTIG 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
P+ +AF ++ + + VF DER +T A++ + D + K + A+I
Sbjct: 62 PQAEKVKAFSG-LLSQSLDTEIVFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118
Query: 145 LQEVLDRIS 153
LQ+ LD +
Sbjct: 119 LQDYLDETN 127
>gi|172040633|ref|YP_001800347.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
DSM 7109]
gi|171851937|emb|CAQ04913.1| putative Hollyday junction resolvase [Corynebacterium urealyticum
DSM 7109]
Length = 143
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++D+G+ RIG+A+SDP A P + ++ I + I+
Sbjct: 21 PGRGRRLALDVGSVRIGVALSDPDGILASPLETVAAAVDGSDVARVVELIEENFVVEVIV 80
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP+ + G+ + F ++ + +P DER++T++A Q VS KK
Sbjct: 81 GLPVALRGNHTSSTVAALDFYEDLGEELPELPIRLVDERMSTMAATQAFQASGVSAKKGS 140
Query: 134 Q 134
+
Sbjct: 141 E 141
>gi|33861348|ref|NP_892909.1| hypothetical protein PMM0791 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|62901009|sp|Q7V1R4|RUVX_PROMP RecName: Full=Putative Holliday junction resolvase
gi|33633925|emb|CAE19250.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 151
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++ I S+D+G KRIGLA D + P L R++ + + I N+ FI+
Sbjct: 6 PKSKSILSLDVGLKRIGLAYCDSLFITVNILPALKRERNNNEIIIIKEHIKKHNLTGFIV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + + ++ +PF F +E +T + V +K +
Sbjct: 66 GLPLDEAGGMTSQALDCKTYGEF-LFNELKLPFSFVNEHSSTWESTNRF---GV-KKDKS 120
Query: 134 QKVDSIAAALILQEVLDRISFLESSKG 160
+DS++A +IL++ + L+ G
Sbjct: 121 GLIDSLSAKIILEQWIQEGPELKELVG 147
>gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
Length = 141
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +D G K+ G A D + P + + L+ I +NI + GLPL+
Sbjct: 2 VLGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLS 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ + V V VF DE T+ A IL + KK+ D
Sbjct: 62 DEGKESEWCSEIRRFSDFLL-KSVKVNVVFVDEYGTSKEADYILRGRKKNVKKKAN--DL 118
Query: 139 IAAALILQEVLDRISFLESS 158
IAAALIL+ L+ ++ +
Sbjct: 119 IAAALILENYLNVLNMNNKN 138
>gi|297564704|ref|YP_003683676.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
gi|296849153|gb|ADH62168.1| Holliday junction resolvase YqgF [Meiothermus silvanus DSM 9946]
Length = 135
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+A++D+G RIGLA+ + G +A R +LVR+ L L +F E +A I+GLP
Sbjct: 1 MKVAALDVGEARIGLAVGEVGSPWAFGRGYLVRRTPQADVLALRAFAERERVAKLIVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L +G+ + V + R+ + DER TT Q L + ++ K+
Sbjct: 61 LRTDGTPSAQAARVLELVRAL--REAGLEVETLDERFTTQLGAQRLKEAPRRVRQEKGKL 118
Query: 137 DSIAAALILQEVLDR 151
D AA +L+ L+R
Sbjct: 119 DEAAAVALLESYLER 133
>gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus
ATCC 53653]
gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus
ATCC 53653]
Length = 124
Score = 95.0 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 49/117 (41%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
+ + + L + + +IGLP ++NG EGP R F + R
Sbjct: 1 METVPGRDIPAAHKRLAAIVAEYEPIEVVIGLPRSLNGREGPAAAKVRTFARELARRVQP 60
Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
V DER+TTV+A L VS KK VD AA +ILQ L+ + G
Sbjct: 61 VSVRLVDERMTTVTAAHGLRASGVSSKKGRSVVDQAAAVVILQSALETERASGRAPG 117
>gi|317402658|gb|EFV83214.1| hollyday junction resolvase [Achromobacter xylosoxidans C54]
Length = 133
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGVAIGNTLTRHARPLEIIFSEVRDVRFARIEALLREWQPHRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L+ +G E P R F + + + V DER +++ AQ++L
Sbjct: 62 LALDADGGEQPATARCRRFAN-QLHGRFGVAVELVDERGSSMEAQRLLGTHAADDAMAAA 120
Query: 135 KVDSIAAALILQEVLDR 151
ILQ LD+
Sbjct: 121 V--------ILQRYLDK 129
>gi|237654352|ref|YP_002890666.1| Holliday junction resolvase-like protein [Thauera sp. MZ1T]
gi|237625599|gb|ACR02289.1| Holliday junction resolvase YqgF [Thauera sp. MZ1T]
Length = 168
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 2/145 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L + D G RIG+A + A + + + I A +
Sbjct: 24 LPARGTVLGFDFGLARIGVASGELETGLASALTTVHAEANDARFAAIARLIAEWRPVALV 83
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS-RKK 131
+G+P +++G E R F + + R +P DERL++V+A+ L + ++
Sbjct: 84 VGIPTHLDGREHELTARCRRFANQLHGRHA-LPVFTADERLSSVAAEAELAEAGRKDWRE 142
Query: 132 RIQKVDSIAAALILQEVLDRISFLE 156
R +D+ AA ++LQ LD
Sbjct: 143 RKAALDAAAARILLQTFLDTRRHER 167
>gi|47459273|ref|YP_016135.1| endonuclease [Mycoplasma mobile 163K]
gi|62900979|sp|Q6KHK6|RUVX_MYCMO RecName: Full=Putative Holliday junction resolvase
gi|47458602|gb|AAT27924.1| hypothetical endonuclease [Mycoplasma mobile 163K]
Length = 144
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHP--RPFLVRKKVTQTALELLSFITTENIAAFIIG 74
IDLG R G AISD + + P LE+ + I +IG
Sbjct: 1 MRKLGIDLGKIRTGFAISDDSNKISLPLKTFIQKNANFNNIILEIKKILLEYQIDTIVIG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP+ +N + F + +++++ +P F +E ++V A + + + KKR
Sbjct: 61 LPIKINNEKTKSTIFVENFKKH-LEKEINLPIFFVNEYNSSVLANLSINE--MKSKKRKT 117
Query: 135 KVDSIAAALILQEVLDR 151
VD I+A +IL + L+
Sbjct: 118 IVDKISAQIILNDFLNN 134
>gi|93004892|ref|YP_579329.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
gi|146325594|sp|Q1QEQ8|RUVX_PSYCK RecName: Full=Putative Holliday junction resolvase
gi|92392570|gb|ABE73845.1| Holliday junction resolvase YqgF [Psychrobacter cryohalolentis K5]
Length = 173
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K++G+A+ + A L LL I +A ++GLPLN
Sbjct: 25 ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVGLPLN 84
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
M+GS F + R + DERLT+V+A++I + + +R
Sbjct: 85 MDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIKHER-A 143
Query: 135 KVDSIAAALILQEVL 149
+D I+A +++
Sbjct: 144 PIDDISACILMSTYF 158
>gi|57233582|ref|YP_180806.1| hypothetical protein DET0051 [Dehalococcoides ethenogenes 195]
gi|146325567|sp|Q3ZAE3|RUVX_DEHE1 RecName: Full=Putative Holliday junction resolvase
gi|57224030|gb|AAW39087.1| conserved hypothetical protein TIGR00250 [Dehalococcoides
ethenogenes 195]
Length = 133
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G K IG+A+SDP R A P L R +T + + + T +IGLP+++NG+ G
Sbjct: 2 GDKWIGVALSDPLRILASPLVILRRDDDAKTVENIEALVKTHQPDLLVIGLPVSLNGTIG 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
P+ +AF ++ + + +F DER +T A++ + D + K + A+I
Sbjct: 62 PQAEKVKAFSG-LLSQSLNTEIIFRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118
Query: 145 LQEVLDRIS 153
LQ+ LD +
Sbjct: 119 LQDYLDETN 127
>gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa]
gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+A+S P L + LL E + FIIGLP +
Sbjct: 92 LGVDLGLSRSGVALS--KGFTVRPLTVLELRGQKLEL-RLLEIAENEEVDEFIIGLPKSW 148
Query: 80 NGSEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + DE T+ A +IDM +++ R +KVD
Sbjct: 149 DGKETPQSNKVRSVAGRFAVLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVD 208
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 209 AYAAVMVLERYF 220
>gi|33591551|ref|NP_879195.1| hypothetical protein BP0320 [Bordetella pertussis Tohama I]
gi|62901015|sp|Q7W045|RUVX_BORPE RecName: Full=Putative Holliday junction resolvase
gi|33571193|emb|CAE40697.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332380951|gb|AEE65798.1| hypothetical protein BPTD_0315 [Bordetella pertussis CS]
Length = 133
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL ++G E P R F + + + DER +++ AQQ+L
Sbjct: 62 LPLTLDGQEQPASARARRFAN-QLHGHFGLAVELVDERSSSMEAQQLLGTHADDDAVAAA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +S
Sbjct: 121 V--------ILQRYLDTLS 131
>gi|329724707|gb|EGG61213.1| RNAse H domain protein, YqgF family [Staphylococcus epidermidis
VCU144]
Length = 123
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK--VTQTALELLSFITTENIAAFII 73
I +D+G+K +G+AISD A L + +L+ I + +I
Sbjct: 3 KHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQDDLGIDQLVKIIKDNQVGTVVI 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP NMN S G R ++ + + + + V WDERL+T++A++ L++ +VSR+KR
Sbjct: 63 GLPKNMNNSIGFRGEASIKYKEKLQESIPSIDIVMWDERLSTMAAERSLLEADVSRQKRK 122
>gi|268679508|ref|YP_003303939.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
6946]
gi|268617539|gb|ACZ11904.1| Holliday junction resolvase YqgF [Sulfurospirillum deleyianum DSM
6946]
Length = 135
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ IAS+D+G KRIG+A+ P+ ++RK Q A E+ +F+T I ++GL
Sbjct: 1 MKKIASLDVGLKRIGVALCLASG-IVTPQEAILRKNRDQAAREVDAFLTEWEIELLVVGL 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + E FV + V+ DE +++ A++++ + R+KR K
Sbjct: 60 PKGGSSEE-EMKRRITHFVSLL---AFSGEVVYQDEYGSSLEAKEMM--QGIMRQKRDGK 113
Query: 136 VDSIAAALILQEVLD 150
+DSIAA +IL+ LD
Sbjct: 114 IDSIAAKVILERYLD 128
>gi|160897026|ref|YP_001562608.1| Holliday junction resolvase-like protein [Delftia acidovorans
SPH-1]
gi|160362610|gb|ABX34223.1| Holliday junction resolvase YqgF [Delftia acidovorans SPH-1]
Length = 152
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G A+ R A+P P + + + I A +IG+P
Sbjct: 27 QSFVAFDFGAKRTGCAVGTRMLRSANPLPTIRAEAGEARLAQAGERIKEWQPDALVIGVP 86
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ + F + + +P DER +T A +
Sbjct: 87 YHPDGNAHENTARAKKFGR-QLKSRFGLPVYEVDERYSTTEALAGGARDADAA------- 138
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L +
Sbjct: 139 ---SACIILEQFLRSLP 152
>gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
Length = 134
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G ++ G+A+ + A P L A +++ +++ +IGLP
Sbjct: 6 ILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPKL 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G E P R + +P + DE L++ A+ L ++VD+
Sbjct: 66 RDGKEHPLAAPIRRIGAKCQEA-FGLPVHYIDEYLSSHEARARLPGE--------KEVDA 116
Query: 139 IAAALILQEVL 149
+AAA+I ++ L
Sbjct: 117 MAAAIIAEDWL 127
>gi|297170741|gb|ADI21763.1| predicted endonuclease involved in recombination (possible holliday
junction resolvase in Mycoplasmas and B. subtilis)
[uncultured gamma proteobacterium HF0130_22O14]
Length = 141
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + D G ++G+AI A P +V + + + I I+G
Sbjct: 2 SSTFIAFDFGMTKMGIAIGQNITNTASPLDPMVMRNGSPDWDLVERLIKEYRPTTIILGK 61
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI----DMNVSRKK 131
P ++ S + +AF +++ + E LT+ A++ L + +SRK
Sbjct: 62 PKVIDESSETLMKKIKAF-KRSLEKDFSQNVEWTPEHLTSKDAKEKLKVRRQEGILSRKI 120
Query: 132 RIQKVDSIAAALILQEVLDRI 152
++DS+AAA+ LQ+ +++
Sbjct: 121 MKGQIDSMAAAIFLQDWMNQR 141
>gi|15672125|ref|NP_266299.1| hypothetical protein L141748 [Lactococcus lactis subsp. lactis
Il1403]
gi|12722992|gb|AAK04241.1|AE006252_3 hypothetical protein L141748 [Lactococcus lactis subsp. lactis
Il1403]
Length = 119
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 39 RFAHPRPFLVRKK--VTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
A P + L I ++GLP +MNG EG R ++R +
Sbjct: 1 MTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLPKHMNGDEGIRAEASRDYG-T 59
Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + + + DERLTT A+++LID V RK+R + +D +AA LILQ LD
Sbjct: 60 KLANEFGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKSIDKLAAVLILQNYLD 113
>gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium
intracellulare ATCC 13950]
Length = 250
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+D+G+ RIG+A SDP A P + R + + L + ++
Sbjct: 19 PGRGRRLGVDVGSVRIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVVV 78
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
GLP + GP + DR P DERLTTVSAQ+ L V K+
Sbjct: 79 GLPRTLADRTGPSAIDAIELADALADRVAPTPVRLADERLTTVSAQRSLRAAGVRAKE 136
>gi|206602306|gb|EDZ38787.1| putative Holliday junction resolvase YqgF [Leptospirillum sp. Group
II '5-way CG']
Length = 171
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--------TQTALELLSFITTEN 67
P+ ID G RIGLAISD RF+ P + + +++ L T +
Sbjct: 15 KAPLLGIDWGEARIGLAISDNSLRFSEPLGVIENRCSFVPPLRIPSKSGDALKRICTEKK 74
Query: 68 IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124
I I G+P +++G P+ + +I P WDE LT+ + +++I
Sbjct: 75 IRGIIFGVPWYHLSGDPNPKSEIFVEYAR-LIRSLTGCPVFLWDEGLTSDVLKSERISGK 133
Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRISFLESSK 159
SR K+ +D +A LILQ LD +
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDECINGREDR 170
>gi|145631446|ref|ZP_01787216.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
gi|144982983|gb|EDJ90492.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
Length = 134
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D GTK IG AI A P + + + I+GLPLNM
Sbjct: 6 LAFDFGTKSIGCAIGQSITGTAQALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNM 65
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
+G+E R F + + + V DERLTT A+ + + + +
Sbjct: 66 DGTEQDLTLRARKFAN-RLQGRFGVNVHLQDERLTTTQARSEIFERGGFKALKK 118
>gi|291533812|emb|CBL06925.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Megamonas hypermegale ART12/1]
Length = 75
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MNG+ G R + F +++ +FWDERL+TV+A + L++ +VSR KR + +D
Sbjct: 1 MNGTVGERCDIVKHFTDKILEDIPDAEIIFWDERLSTVAADRYLLEADVSRAKRKKVIDK 60
Query: 139 IAAALILQEVLDRI 152
+AA ILQ LD +
Sbjct: 61 MAAVFILQGYLDSL 74
>gi|33598438|ref|NP_886081.1| hypothetical protein BPP3931 [Bordetella parapertussis 12822]
gi|33603378|ref|NP_890938.1| hypothetical protein BB4404 [Bordetella bronchiseptica RB50]
gi|62901016|sp|Q7W3U6|RUVX_BORPA RecName: Full=Putative Holliday junction resolvase
gi|62901017|sp|Q7WF76|RUVX_BORBR RecName: Full=Putative Holliday junction resolvase
gi|33574567|emb|CAE39214.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33577502|emb|CAE34767.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 133
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LPL ++G E P R F + + + + DER +++ AQQ+L
Sbjct: 62 LPLTLDGQEQPASARARRFAN-QLHGRFGLAVELVDERGSSMEAQQLLGTHAADDAVAAA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +
Sbjct: 121 V--------ILQRYLDTLP 131
>gi|71064637|ref|YP_263364.1| hypothetical protein Psyc_0056 [Psychrobacter arcticus 273-4]
gi|146325593|sp|Q4FVM8|RUVX_PSYA2 RecName: Full=Putative Holliday junction resolvase
gi|71037622|gb|AAZ17930.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 177
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K++G+A+ + A L LL I +A ++GLPLN
Sbjct: 29 ILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVGLPLN 88
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP----FVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
M+GS F + R + DERLT+V+A++I + + +R
Sbjct: 89 MDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIQNER-D 147
Query: 135 KVDSIAAALILQEVL 149
+D I+A +++
Sbjct: 148 PIDDISACILMSTYF 162
>gi|313681709|ref|YP_004059447.1| holliday junction resolvase yqgf [Sulfuricurvum kujiense DSM 16994]
gi|313154569|gb|ADR33247.1| Holliday junction resolvase YqgF [Sulfuricurvum kujiense DSM 16994]
Length = 130
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +IDLG KRIGLA+S G P P + RK Q A ++ + ++G+
Sbjct: 1 MGAIIAIDLGLKRIGLALS-YGNTLVTPLPAIERKNRNQAANDVKKVLNEYEATTVVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ GS R H M + + DE ++ A++++ R KR +
Sbjct: 60 PM---GSTTEDEMR-RRVAHFMNLVEFNGEIAYQDESHSSKEAEELMK--GDIRYKRDGR 113
Query: 136 VDSIAAALILQEVL 149
+DS++A +IL+ L
Sbjct: 114 IDSLSAKIILERYL 127
>gi|73748006|ref|YP_307245.1| hypothetical protein cbdb_A67 [Dehalococcoides sp. CBDB1]
gi|147668700|ref|YP_001213518.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
gi|289432003|ref|YP_003461876.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
gi|146325568|sp|Q3ZWC2|RUVX_DEHSC RecName: Full=Putative Holliday junction resolvase
gi|73659722|emb|CAI82329.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|146269648|gb|ABQ16640.1| Holliday junction resolvase YqgF [Dehalococcoides sp. BAV1]
gi|288945723|gb|ADC73420.1| Holliday junction resolvase YqgF [Dehalococcoides sp. GT]
Length = 133
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G K IG A+SDP R A P L R T+T + S + T IIGLP+++NG+ G
Sbjct: 2 GDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLIIGLPISLNGTIG 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
P+ ++F ++ R + + ++ DER +T A++ + D + K + A+I
Sbjct: 62 PQAEKVKSFSE-LLSRHLNIEIIYRDERFSTDEARRKMNDSGKNNKTVRDDAAAA--AVI 118
Query: 145 LQEVLDRIS 153
LQ+ LD +
Sbjct: 119 LQDYLDETN 127
>gi|320449493|ref|YP_004201589.1| hypothetical protein TSC_c04030 [Thermus scotoductus SA-01]
gi|320149662|gb|ADW21040.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 128
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G RIGLA+ + G FA R +LVR+ + + LL F+ E + ++GLPL + E
Sbjct: 2 GEARIGLAVGEEGSPFAFGRGYLVRRSLEEDVAALLDFVRREGLGKLLVGLPLRTDLKES 61
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
+ V + + V DER TT +A + L ++ ++D ++A ++
Sbjct: 62 AQAQRVLPLVEALRAK--GVEVELVDERYTTQAAARRLKHAPKRIRREKGRLDEMSAVIL 119
Query: 145 LQEVL 149
L+ L
Sbjct: 120 LEGYL 124
>gi|331697329|ref|YP_004333568.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
gi|326952018|gb|AEA25715.1| Holliday junction resolvase [Pseudonocardia dioxanivorans CB1190]
Length = 149
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK------KVTQTALELLSFITTEN 67
ID+G R+G+A+SDP A P + R + E+ + + +
Sbjct: 4 PRRGRRLGIDVGAVRVGVALSDPDGMLATPLVTVARDLREAGDRSGSDLREIAALVAEHD 63
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ I+GLP + G+EGP + RA + + + VP DERLTTV A + L + V
Sbjct: 64 VVQVIVGLPRTLAGAEGPAAAAARA-FADDLVAVLDVPVELSDERLTTVVATRQLRERGV 122
Query: 128 SRKKRIQKVDSIAAALILQEVLDRIS 153
K++ VD AA ILQ LD
Sbjct: 123 KGKRQRAVVDQAAAVAILQGWLDARP 148
>gi|293603244|ref|ZP_06685676.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
ATCC 43553]
gi|292818376|gb|EFF77425.1| crossover junction endodeoxyribonuclease [Achromobacter piechaudii
ATCC 43553]
Length = 136
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 5 PEETLLGFDFGEKKIGIAIGNTLTRQARPLEIIFSEIRDARFGRIAALLQEWQPHRVVVG 64
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L+ +G E R F + + + + DER +++ AQ++L
Sbjct: 65 LALDADGGEQAATARCRRFAN-QLHGRFGIAVELVDERGSSMEAQRLLGTHAADDAMAAA 123
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +
Sbjct: 124 V--------ILQRYLDTLP 134
>gi|311103825|ref|YP_003976678.1| holliday junction resolvase-like protein [Achromobacter
xylosoxidans A8]
gi|310758514|gb|ADP13963.1| holliday junction resolvase-like protein [Achromobacter
xylosoxidans A8]
Length = 133
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEVREARFGRIAALLQEWQPHRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L+ G E P R F + + + + DER +++ AQ++L
Sbjct: 62 LALDAEGGEQPATARCRRFAN-QLHGRFGLAVELVDERGSSMEAQRLLGTHAADDAMAAA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +
Sbjct: 121 V--------ILQRYLDTLP 131
>gi|301633655|gb|ADK87209.1| RNAse H domain protein, YqgF family [Mycoplasma pneumoniae FH]
Length = 140
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IG 74
Q I ID G KRIG A+++ RF P + Q A+ L + + I
Sbjct: 1 MQYILGIDFGLKRIGTALANTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ + S FV +I + VP DE TT + L ++ + + +
Sbjct: 61 IGFPHFHYQSSIQVSIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTFKK 119
Query: 135 KVDSIAAALILQEVLDR 151
D++AA LIL+ L++
Sbjct: 120 AKDTLAATLILERFLNQ 136
>gi|197294553|ref|YP_001799094.1| Holliday junction resolvase-like protein [Candidatus Phytoplasma
australiense]
gi|171853880|emb|CAM11842.1| Putative holliday junction resolvase [Candidatus Phytoplasma
australiense]
Length = 140
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPF--LVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+DLG K +G+A+S A + Q L I I I+G P
Sbjct: 1 MGLDLGEKTLGIALS-ETGIIAQKLKTLFFPVNQYKQLIKPLKEIIDYYKIKTIILGYPK 59
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+MN G + + F + V + WDERL+TV + +IL N +KK D
Sbjct: 60 HMNNDIGIKAQISIKFKEILETNFPLVKVILWDERLSTVQSIKILRQNNKKKKKIKTLKD 119
Query: 138 SIAAALILQEVLD 150
IAA +ILQ LD
Sbjct: 120 VIAATIILQNYLD 132
>gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169]
gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis
46P47B1]
gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis
103P14B1]
gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1]
gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis
12P80B1]
gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8]
gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7]
gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72]
gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E]
gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis
101P30B1]
Length = 158
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G K++G+A+ + A P L LL I I ++GLPLNM
Sbjct: 8 LALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNM 67
Query: 80 NGSEGPRVHSTRAFVHNMI----DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+E F + +R+ V +DERL++ A+ I +D +
Sbjct: 68 DGTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALDNGWIAS-SSEP 126
Query: 136 VDSIAAALILQEV 148
+D IAA L+L
Sbjct: 127 IDDIAACLLLDSY 139
>gi|124514186|gb|EAY55701.1| putative holliday junction resolvase YqgF [Leptospirillum rubarum]
Length = 171
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV--------TQTALELLSFITTEN 67
P+ ID G R+GLA+SD RF+ P + + +++ L T +
Sbjct: 15 KAPLLGIDWGEARVGLAMSDNSLRFSEPLGVIENRCSFLPPFRIPSKSGGALKRICTEKK 74
Query: 68 IAAFIIGLPL-NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT--VSAQQILID 124
I + G+P +++G P+ + +I P WDE LT+ + ++++
Sbjct: 75 IQGIVFGVPWYHLSGDPNPKSEVFVEYAR-LIRSLTGCPVFLWDEGLTSDVLKSERMSGK 133
Query: 125 MNVSR--KKRIQKVDSIAAALILQEVLDRISFLESSK 159
SR K+ +D +A LILQ LD +
Sbjct: 134 RKYSRSPKRSRDPIDHYSATLILQSFLDECINGREDR 170
>gi|221065221|ref|ZP_03541326.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1]
gi|220710244|gb|EED65612.1| Holliday junction resolvase YqgF [Comamonas testosteroni KF-1]
Length = 170
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q D G KR G A + A+P P + + I A +IG+P
Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIRADGADARLAAVEKLIREWQPNALVIGVP 104
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSRFK-LPVYEVDERYSTTEALAGGARDADAA------- 156
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L +
Sbjct: 157 ---SACIILEQFLRSLP 170
>gi|254525703|ref|ZP_05137755.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
str. MIT 9202]
gi|221537127|gb|EEE39580.1| conserved hypothetical protein TIGR00250 [Prochlorococcus marinus
str. MIT 9202]
Length = 140
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+GTKRIGLA DP ++ P + R + Q + + I N+ FI+G+PL+ G
Sbjct: 2 DVGTKRIGLAYCDPLCITSNILPPVKRLENNQEIKIIRNHINELNLTGFIVGIPLDDKGL 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
+ + + +++ +PF + +E +T + +K + +DS +A
Sbjct: 62 MTSQAIDCKNYGQLLLNELK-LPFSYVNEHSSTWESSDRF----GIKKDKSGLIDSFSAK 116
Query: 143 LILQEVLDRISFLESSKG 160
+IL++ ++ LE G
Sbjct: 117 IILEQWIEEGPELEEIIG 134
>gi|33240317|ref|NP_875259.1| endonuclease [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|62901011|sp|Q7VC75|RUVX_PROMA RecName: Full=Putative Holliday junction resolvase
gi|33237844|gb|AAP99911.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 153
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ S D G KRIGLA DP + R + + S I I+
Sbjct: 4 PKPTSVLSFDYGHKRIGLAGCDPLGITVTALSPIHRISFQKDLTLIKSLCIEREIKGLIV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ +G + + + I +++ +P + +E ++ A Q N R
Sbjct: 64 GLPLDESGQNTVQSIHCQNYG-IKIAKELDLPLAWVNEHSSSWDAGQKYNLQN----DRT 118
Query: 134 QKVDSIAAALILQEVLDRISFLE 156
K+DS AAL+L++ L L+
Sbjct: 119 GKLDSAVAALLLEQWLREGPELQ 141
>gi|113955356|ref|YP_730921.1| endonuclease [Synechococcus sp. CC9311]
gi|113882707|gb|ABI47665.1| Predicted endonuclease [Synechococcus sp. CC9311]
Length = 158
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
++ + S+D+G KRIGLA D P P L+R+ Q L T + ++
Sbjct: 3 PSSRSMLSLDVGRKRIGLAGCDALGITVSPLPALLRRAFKQDLGHLEQVCLTRRVQGLVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + + + +P +E ++ +A + R
Sbjct: 63 GLPLDAAGQFTEQAAHCQRYGQ-RLAMALKLPLALVNEHSSSWAAAERYGLQG----DRS 117
Query: 134 QKVDSIAAALILQEVL 149
++DS AA+L+L++ L
Sbjct: 118 GRLDSAAASLLLEQWL 133
>gi|139436943|ref|ZP_01771103.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
25986]
gi|133776590|gb|EBA40410.1| Hypothetical protein COLAER_00076 [Collinsella aerofaciens ATCC
25986]
Length = 119
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 40 FAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID 99
A P L +VT A + + G PL M G GP+ A I
Sbjct: 1 MAMPVKVLPAAEVTGMAKTFRYLVEDYEPDILVSGRPLTMAGEPGPQAERVAAVAQ-KIA 59
Query: 100 RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
++ +P F DERL++ A++IL + ++ K+ K+D IAA+L LQ LDR +
Sbjct: 60 DELDLPLEFEDERLSSQEAKRILREQGLNEKQMRGKIDMIAASLFLQTWLDRKNE 114
>gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129]
gi|11135617|sp|P57114|RUVX_MYCPN RecName: Full=Putative Holliday junction resolvase
gi|11379549|gb|AAG34748.1|AE000041_6 conserved hypothetical protein [Mycoplasma pneumoniae M129]
Length = 140
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 2/137 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI-IG 74
Q I ID G KRIG A+ + RF P + Q A+ L + + I
Sbjct: 1 MQYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
+ + S FV +I + VP DE TT + L ++ + + +
Sbjct: 61 IGFPHFHYQSSIQVSIHKFVE-LIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTFKK 119
Query: 135 KVDSIAAALILQEVLDR 151
D++AA LIL+ L++
Sbjct: 120 AKDTLAATLILERFLNQ 136
>gi|152990631|ref|YP_001356353.1| Holliday junction resolvase-like protein [Nitratiruptor sp.
SB155-2]
gi|151422492|dbj|BAF69996.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 130
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
IA+ID+G KRIG AI + P+ ++RK Q A ++ SF+ NI ++G+P
Sbjct: 3 SRIAAIDVGLKRIGTAIC-LDGKIVLPQTPIIRKNRNQAARDVSSFLREWNIDTLVVGIP 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+G+ + R H + F DE T+ A++ V + K+ K+
Sbjct: 62 ---DGTSKEEMQ--RRIAHFVSLLDFDGVVEFVDEGFTSHEAKEATK--GVIKHKKDGKI 114
Query: 137 DSIAAALILQEVL 149
DSIAA IL+ L
Sbjct: 115 DSIAAQKILERWL 127
>gi|195952585|ref|YP_002120875.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
gi|195932197|gb|ACG56897.1| Holliday junction resolvase YqgF [Hydrogenobaculum sp. Y04AAS1]
Length = 123
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID GTKRIGLA+ D + P + K L + I ++G PL
Sbjct: 2 ILGIDYGTKRIGLALGDKHLKIYKPFKIIKNDK--NLIQTLKHIVKAYKIELIVLGYPLT 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G EG R + F ++ +++ + V DER TT A+ + + +++D
Sbjct: 60 PSGKEGQRAKKVKKFYE-LLKKELNIDIVLQDERYTTFEAKSLSDE---------KEIDH 109
Query: 139 IAAALILQEVLDRI 152
I+A +IL+E + +
Sbjct: 110 ISAYIILKEYAENL 123
>gi|152966975|ref|YP_001362759.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
SRS30216]
gi|226725529|sp|A6WCF6|RUVX_KINRD RecName: Full=Putative Holliday junction resolvase
gi|151361492|gb|ABS04495.1| Holliday junction resolvase YqgF [Kineococcus radiotolerans
SRS30216]
Length = 188
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA-AF 71
++P ++D+G+ R+GLA DP A P LVR + ++ A
Sbjct: 1 MRPGVR-LAVDVGSVRVGLAACDPAGVIASPVRTLVRDPGHDADVAEIAAEARARGAVEI 59
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLPL+++GSEGP + ++ VP DERL+TV A + L + K+
Sbjct: 60 VLGLPLSLDGSEGPAALRALDYADKIVRSVPEVPVRLVDERLSTVGAHRALHAAGLKEKQ 119
>gi|261414429|ref|YP_003248112.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261370885|gb|ACX73630.1| Holliday junction resolvase YqgF [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 134
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G R+G+A D + A R + +K T L + I F++G+P +
Sbjct: 1 MALDYGEHRVGVAFGDSELKMAFSRETID-QKTTNLFERLDQLVRLNKIDEFVVGMPYHP 59
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDS 138
+G + + AF+ ++ R + DE ++V AQ+ ++K +D
Sbjct: 60 DGRKDGKNVVVEAFIKDLTLRFPGMKIHTQDESYSSVQAQEFTSYMSKKKKQKNKAIIDR 119
Query: 139 IAAALILQEVLDRI 152
AAA+ILQ D
Sbjct: 120 TAAAIILQRWFDER 133
>gi|163854867|ref|YP_001629165.1| Holliday junction resolvase-like protein [Bordetella petrii DSM
12804]
gi|226725491|sp|A9I1T0|RUVX_BORPD RecName: Full=Putative Holliday junction resolvase
gi|163258595|emb|CAP40894.1| putative Hollyday junction resolvase [Bordetella petrii]
Length = 131
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 9/139 (6%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P + + + D G K+IG+AI + R A P + + + + ++G
Sbjct: 2 PEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSEIREARFARIGQLLQQWQPQRVVVG 61
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L L +G E P R F + + + + DER +++ AQ++L
Sbjct: 62 LALASDGGEQPATARCRRFAN-QLRGRYGLAVELVDERGSSMEAQRLLGTHAPDDAVAAA 120
Query: 135 KVDSIAAALILQEVLDRIS 153
ILQ LD +
Sbjct: 121 V--------ILQRYLDALP 131
>gi|121997730|ref|YP_001002517.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1]
gi|121589135|gb|ABM61715.1| Holliday junction resolvase YqgF [Halorhodospira halophila SL1]
Length = 142
Score = 89.2 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P + D G + IG+A+ + A L + + + A ++
Sbjct: 4 PPGGTLLGFDPGARHIGVAVGEALLGTARGLTTLPARHGQPDWEAVSELLAQWTPEALVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
GLP + +GS+ R + + +P DERL++ A++ L
Sbjct: 64 GLPSHADGSDADSTELARRLAG-RLHGRFGLPVHTVDERLSSHVAEERL 111
>gi|270340027|ref|ZP_06006785.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332902|gb|EFA43688.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 117
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 37 GRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
+ A+ + K + ++ E + +IG P+ ++G+ FV
Sbjct: 1 MQFIANGLTTVETKDLFDFLSS---YVKQEEVERIVIGKPMQLDGNPSENFARVENFVGR 57
Query: 97 MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV---DSIAAALILQEVLDR 151
+P V++DER T+V A + +++ V +K R + D I+A +ILQ+ ++
Sbjct: 58 WRKSHPAIPIVYYDERFTSVLAHRAILESGVKKKTRRENKGLADEISATIILQDYMNS 115
>gi|328907451|gb|EGG27217.1| RNAse YqgF [Propionibacterium sp. P08]
Length = 134
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
+A SD A P + + L + I+GLP+ +NG+E
Sbjct: 1 MAASDRDAILAFPVETVQTAN--RPMQRLAEIVAEYEPVEVIMGLPVALNGTEQLAARDI 58
Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
R + + +P + DER+TT +A + L D + +++ +D AA IL++VL+
Sbjct: 59 RDAGRQLAEAISPIPVRWVDERMTTRTAARALHDAGRNARQQRGVIDQAAAVAILEDVLE 118
Query: 151 RIS 153
++
Sbjct: 119 QVR 121
>gi|152992044|ref|YP_001357765.1| Holliday junction resolvase-like protein [Sulfurovum sp. NBC37-1]
gi|167016516|sp|A6Q7E9|RUVX_SULNB RecName: Full=Putative Holliday junction resolvase
gi|151423905|dbj|BAF71408.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 128
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+A+ID+G KRIG AI R P+ ++RK Q A +++SF+ I ++GLP
Sbjct: 1 MKLAAIDVGLKRIGTAIC-LDGRIVMPQNAILRKNRNQAAHDVVSFLEEWEIEKLVVGLP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ SE + FV + ++ +P V+ DE+ ++ A+++ R K+ K+
Sbjct: 60 KGGSSSE-EMERRIQHFVSLL---ELDIPVVYQDEQGSSFEAKEMT--QGQFRHKKDGKI 113
Query: 137 DSIAAALILQEVL 149
DSIAA +IL+ L
Sbjct: 114 DSIAAKIILERHL 126
>gi|224437002|ref|ZP_03657983.1| Holliday junction resolvase-like protein [Helicobacter cinaedi CCUG
18818]
gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 140
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N+ I + D+G KRIGLA++ P ++RK Q + EL + T I ++GL
Sbjct: 3 NKKILACDVGLKRIGLAVTQ--LGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK---KR 132
P FV + + DE T++ A Q M V + ++
Sbjct: 61 PSGGEAGHSDTRKRILHFVGLV---AFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQK 117
Query: 133 IQKVDSIAAALILQEVLDRISFL 155
++DS++A LIL+ L+ + L
Sbjct: 118 DGRLDSLSATLILERFLESNNPL 140
>gi|72162468|ref|YP_290125.1| Holliday junction resolvase-like protein [Thermobifida fusca YX]
gi|134048664|sp|Q47N67|RUVX_THEFY RecName: Full=Putative Holliday junction resolvase
gi|71916200|gb|AAZ56102.1| Holliday junction resolvase YqgF [Thermobifida fusca YX]
Length = 159
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D G RIG+A SDP A P + R + + + I+G P ++
Sbjct: 7 LAVDPGAARIGVARSDPDGILAIPVETIRRGPGD--LDRIAALVLEYEAREVIVGYPASL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI-------DMNVSRKKR 132
+G+EG + RAF + R VP DERLTTV+A+ L + R
Sbjct: 65 SGAEGRAARAARAFAKALARRLAPVPVRLVDERLTTVTAELHLRTGASYRKRGARGGRAR 124
Query: 133 IQKVDSIAAALILQEVLD 150
+D AA ++LQ LD
Sbjct: 125 RSVIDQAAATVLLQNALD 142
>gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist]
gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27]
gi|62901025|sp|Q83GD2|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase
gi|62901026|sp|Q83HU9|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase
gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist]
Length = 145
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G+ RIG+A A P L R E+L +I+ +I +IGLPL +
Sbjct: 11 LGLDFGSTRIGVAR--NCGSLAVPVGVLPRAS----CAEILGYISRYSIDEVVIGLPLTL 64
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G E + F ++ V F+DER TTV A Q + K+ + VD+
Sbjct: 65 AGKEKQSARLAKEFSRFLVSS--GVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVDAA 122
Query: 140 AAALILQEVLD 150
AA ++LQ LD
Sbjct: 123 AATVMLQLFLD 133
>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]
Length = 679
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+S P L + +LL E + FIIGLP++
Sbjct: 513 LGVDLGMSRTGLALS--KGFSVRPLSVLKLRGQKLEL-QLLEIAGREEVDEFIIGLPVSD 569
Query: 80 NGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + R + DE T+ A ++IDM S+ R ++D
Sbjct: 570 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 629
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 630 AYAAMMVLERYF 641
>gi|126640401|ref|YP_001083385.1| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
Length = 128
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 29 IGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVH 88
+G+AI A+P P V K +LL + FI+GLPLNM+ SE
Sbjct: 1 MGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNMDDSESELST 60
Query: 89 STRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEV 148
R F + + + DERLTT A++ L + + DS AAAL++Q
Sbjct: 61 RARKFAR-RLRHQTNIETWMVDERLTTREAREELGFYQEQGRAKKLSADSFAAALLIQSW 119
>gi|88705483|ref|ZP_01103194.1| Holliday junction resolvase [Congregibacter litoralis KT71]
gi|88700573|gb|EAQ97681.1| Holliday junction resolvase [Congregibacter litoralis KT71]
Length = 121
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Query: 31 LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHST 90
+A+ + P L + ++ + +IG PLNM+G+
Sbjct: 1 MAVGNSALGTTQPLAILRARDGQPDWTQVAALCKEWEPDLLLIGDPLNMDGTVSDFAQRA 60
Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
R F ++ ++ + DERL++ +Q + S VD +AA LIL++ L
Sbjct: 61 RKFAR-RLEGRLGIAVEMVDERLSSFEVKQQQREAGHSGDYHESPVDDLAAELILKDWL 118
>gi|162452820|ref|YP_001615187.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
56']
gi|161163402|emb|CAN94707.1| putative Hollyday junction resolvase [Sorangium cellulosum 'So ce
56']
Length = 163
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
IDLG R+G+A++D +AHPRP L + L + E I F++GLPL MNG
Sbjct: 33 IDLGKARVGVAVTDELGLYAHPRPLLDGRNRKALLEALAALARDEGITRFLVGLPLEMNG 92
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
EGP A + V DERLTTV A + L D VS +K ++VD
Sbjct: 93 DEGPAARRALA-FAQALADAAGVEVELVDERLTTVEAARRLRDGGVSGRKSKERVD 147
>gi|124265899|ref|YP_001019903.1| Holliday junction resolvase-like protein [Methylibium
petroleiphilum PM1]
gi|124258674|gb|ABM93668.1| putative Holliday junction resolvase [Methylibium petroleiphilum
PM1]
Length = 136
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
P Q + + D G KR G+A + R A P + + + I AA ++G
Sbjct: 10 PLQTLLAFDFGLKRTGVATGNTLTRSAQPLRTVAAE-GDARFDAIAKLIAEWQPAALVVG 68
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
+P + +G+ + F + R +P DER +T A
Sbjct: 69 VPFHPDGAPHDNTRRAQRFARQLHGRFR-LPVHEVDERWSTTEA 111
>gi|289706210|ref|ZP_06502573.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
gi|289557049|gb|EFD50377.1| RNAse H-fold protein YqgF [Micrococcus luteus SK58]
Length = 173
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFII 73
+D+G R+G+A +DP A P + + EL++ ++ A +
Sbjct: 16 RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 75
Query: 74 GLPLNMNGSEGPRVHSTRAF----VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP+N+ G P + +++ VP DERL+TVSAQ L S
Sbjct: 76 GLPVNLRGEHTPSTQDALDYADAVAAALVEVSHPVPVRLVDERLSTVSAQAGLRAAGRSV 135
Query: 130 KKRIQKVD 137
K +D
Sbjct: 136 KDSRGVID 143
>gi|264680115|ref|YP_003280024.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2]
gi|262210630|gb|ACY34728.1| Holliday junction resolvase YqgF [Comamonas testosteroni CNB-2]
Length = 170
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q D G KR G A + A+P P + + + I A +IG+P
Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSRFK-LPVYEVDERYSTTEALAGGARDADAA------- 156
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L +
Sbjct: 157 ---SACIILEQFLRSLP 170
>gi|299534054|ref|ZP_07047406.1| Holliday junction resolvase-like protein [Comamonas testosteroni
S44]
gi|298717963|gb|EFI58968.1| Holliday junction resolvase-like protein [Comamonas testosteroni
S44]
Length = 170
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q D G KR G A + A+P P + + + I A +IG+P
Sbjct: 45 QQFLGFDFGIKRTGCASGNRVLGGANPLPTIKAEAADARLAAVEKLIREWQPNALVIGVP 104
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + R +P DER +T A +
Sbjct: 105 YHPDGAAHENTARALKFGRQLRSRFK-LPVYEVDERYSTTEALAGGARDADAA------- 156
Query: 137 DSIAAALILQEVLDRIS 153
+A +IL++ L +
Sbjct: 157 ---SACIILEQFLRSLP 170
>gi|225453535|ref|XP_002275849.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 233
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+S P L + +LL E + FIIGLP++
Sbjct: 67 LGVDLGMSRTGLALS--KGFSVRPLSVLKLRGQKLEL-QLLEIAGREEVDEFIIGLPVSD 123
Query: 80 NGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + R + DE T+ A ++IDM S+ R ++D
Sbjct: 124 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSLMIDMGHSKSARQNRID 183
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 184 AYAAMMVLERYF 195
>gi|251773417|gb|EES53966.1| Holliday junction resolvase YqgF [Leptospirillum ferrodiazotrophum]
Length = 168
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRK--------KVTQTALELLSFITTENI 68
+ ID G +R+G+A+SDP R A P LVR + + L T ++
Sbjct: 9 GVLMGIDWGGRRVGVALSDPSRTLARPLTVLVRDGSGTIPFQEGEKLLASLRKIATDHDV 68
Query: 69 AAFIIGLP-LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
+ G+P +++G P + R + +P DE ++ +A + + +
Sbjct: 69 TGLVFGIPYYHLSGDPNPHAPLFLRVAR-DLSRDLALPLFLHDEGQSSEAA-REIRKGHP 126
Query: 128 SRKKRIQKVDSIAAALILQEVLD 150
R+ Q +D +AAA +LQ LD
Sbjct: 127 GRRNSAQSLDHVAAATLLQGFLD 149
>gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 296
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+P++ +D GT+R+GLAI A P V + + A ++L E I
Sbjct: 72 TKTRPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDL-EVARQVLVRARGEGIRD 130
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDMN 126
++GLPL NG+E R F + D + WDER ++ A +L
Sbjct: 131 IVVGLPLERNGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYG 190
Query: 127 VSRKKRIQKVDSIAAALILQEVLDR 151
+++ +DS+AA+LIL+ +
Sbjct: 191 GGMSSKVE-IDSLAASLILKHFFEE 214
>gi|84622967|ref|YP_450339.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188577974|ref|YP_001914903.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|118597225|sp|Q5H2Z1|RUVX_XANOR RecName: Full=Putative Holliday junction resolvase
gi|146325625|sp|Q2P5W2|RUVX_XANOM RecName: Full=Putative Holliday junction resolvase
gi|226695317|sp|B2SIZ4|RUVX_XANOP RecName: Full=Putative Holliday junction resolvase
gi|84366907|dbj|BAE68065.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522426|gb|ACD60371.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 155
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
++ P+ + D+G++RIG+A+ A + L
Sbjct: 6 AILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPDGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
++G PL ++ P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 66 VVGDPLTLDDKHQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 131 KRIQ 134
+R
Sbjct: 125 RRRD 128
>gi|242309711|ref|ZP_04808866.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523712|gb|EEQ63578.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 135
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q I ++D+G KRIG+A + P P ++RK Q A ++ + I +N +IG+
Sbjct: 1 MQNIIALDIGLKRIGIA--QFLQNIPIPLPPILRKNRNQAARDVSNLIQMKNPQILVIGI 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P +G + N+++ + F DE ++ A Q + ++KK
Sbjct: 59 PQ--DGDSSLEMERRIKHFINLLEIPKGIEICFIDESFSSFEALQKMQGSKKNKKK-DGS 115
Query: 136 VDSIAAALILQEVL 149
+DS+AA +IL+ L
Sbjct: 116 LDSLAALIILERYL 129
>gi|58581049|ref|YP_200065.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58425643|gb|AAW74680.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 167
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
++ P+ + D+G++RIG+A+ A + L
Sbjct: 18 AILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWDALDRVHKEWRPDGL 77
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
++G PL ++ P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 78 VVGDPLTLDDKHQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 136
Query: 131 KRIQ 134
+R
Sbjct: 137 RRRD 140
>gi|284032273|ref|YP_003382204.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
gi|283811566|gb|ADB33405.1| Holliday junction resolvase YqgF [Kribbella flavida DSM 17836]
Length = 152
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + ++D+G RIG+A SDP A P + R +++ + +
Sbjct: 1 MRRGVRV-ALDIGDARIGVASSDPHGILATPVETVRRGPGD--LDRIVTLVADLEAFEIV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMID----RKVYVPFVFWDERLTTVSAQQILIDM-NV 127
+GLP ++NG EGP RA + R+V DER TTV+A+++L +
Sbjct: 58 VGLPRSLNGGEGPAAVKIRATAEQVRQLVAARQVDTEVRLVDERFTTVTAERMLRE-RGK 116
Query: 128 SRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
KR VD AA +ILQ LD + G
Sbjct: 117 KGSKRRAVVDQAAAVVILQHALDFERETGNPPG 149
>gi|225619635|ref|YP_002720892.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
gi|225214454|gb|ACN83188.1| Holliday junction resolvase [Brachyspira hyodysenteriae WA1]
Length = 139
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID G K+ G A D + P + + L+ I +NI + GLPL+
Sbjct: 2 VLGIDFGRKKTGTAFMDMDIKIPFPCRLIEESNARKVKRALMDIIEEKNIDTVVFGLPLS 61
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ + V V VF DE T+ A IL K + D
Sbjct: 62 DEGKESDWCAEIRRFSEFLL-KSVKVDIVFVDEYGTSKEADFILRGKKKKVKNKAN--DL 118
Query: 139 IAAALILQEVLDRISFLESSK 159
IAA LIL+ L+ ++ ++
Sbjct: 119 IAATLILENYLNVLNMNNKNQ 139
>gi|325919592|ref|ZP_08181604.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
gi|325549928|gb|EGD20770.1| hypothetical protein TIGR00250 [Xanthomonas gardneri ATCC 19865]
Length = 155
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++P+ + D+G++RIG+A+ A + L
Sbjct: 6 AIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHATGPDWAALDRVHKEWRPDGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
+IG PL ++ + P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 66 VIGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 131 KRIQ 134
+R
Sbjct: 125 RRRD 128
>gi|21243644|ref|NP_643226.1| Holliday junction resolvase-like protein [Xanthomonas axonopodis
pv. citri str. 306]
gi|32130040|sp|Q8PII0|RUVX_XANAC RecName: Full=Putative Holliday junction resolvase
gi|21109221|gb|AAM37762.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 155
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++P+ + D+G++RIG+A+ A + + L
Sbjct: 6 AIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQWRPDGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
++G PL ++ + P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 66 VVGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 131 KRIQ 134
+R
Sbjct: 125 RRRD 128
>gi|188990810|ref|YP_001902820.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. campestris str. B100]
gi|226695316|sp|B0RQM9|RUVX_XANCB RecName: Full=Putative Holliday junction resolvase
gi|167732570|emb|CAP50764.1| Putative Hollyday junction resolvase [Xanthomonas campestris pv.
campestris]
Length = 155
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++P+ + D+G++RIG+A+ A + + L A
Sbjct: 6 AIRPDATVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPAGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
++G PL ++ + P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 66 VVGDPLTLDDKDQPARKRAHAFARELRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 131 KRI 133
+R
Sbjct: 125 RRR 127
>gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 172
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 8/142 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+DLG + GLAIS +A +VR++ + +L + F++GL
Sbjct: 12 RGHTVGVDLGDAKTGLAIS--LGGYAPRPLTVVRQRGDKLLETILQVGIPQRADEFVVGL 69
Query: 76 PLNMNGSEGPRVHSTRAFVHNMID------RKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
P +G + + + R+F + + DE T+ A +IDM +R
Sbjct: 70 PKAWDGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNR 129
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
+ R +++D+ AA +L +
Sbjct: 130 RSRKEQLDAYAATALLCRYFES 151
>gi|167012774|sp|Q4A632|RUVX_MYCS5 RecName: Full=Putative Holliday junction resolvase
gi|144575088|gb|AAZ43789.2| conserved hypothetical protein [Mycoplasma synoviae 53]
Length = 137
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGL 75
ID G RIG AISD F+ + ++ + + I FIIG
Sbjct: 1 MRKLGIDFGLSRIGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGY 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PLN G + F+ +++ +E ++ A +IL N+ KK+ K
Sbjct: 61 PLNSRGEKTKTCLLIDEFI-IHLEKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDK 119
Query: 136 VDSIAAALILQEVLD 150
D +AA +ILQ+ LD
Sbjct: 120 KDMLAAKIILQDYLD 134
>gi|85707967|ref|ZP_01039033.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
gi|85689501|gb|EAQ29504.1| hypothetical protein NAP1_01990 [Erythrobacter sp. NAP1]
Length = 85
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
++GLP NM+GSEGPR ++RAF N + +P + WDER +T SA+ +I ++SRKK
Sbjct: 1 MLGLPRNMDGSEGPRAQASRAFARNA-EEAFALPLLLWDERWSTQSAEAAMIGQDMSRKK 59
Query: 132 RIQKVDSIAAALILQEVLDRIS 153
R + +DS AAA+ILQ +DR++
Sbjct: 60 RAESIDSHAAAVILQGAIDRLA 81
>gi|121595864|ref|YP_987760.1| Holliday junction resolvase-like protein [Acidovorax sp. JS42]
gi|120607944|gb|ABM43684.1| Holliday junction resolvase YqgF [Acidovorax sp. JS42]
Length = 139
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 12/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ +R + ++ I A ++G+P
Sbjct: 15 QSFLAFDYGLKRTGVAVGTRMLRSATPQGT-IRAEGDARFAQVAERIREWQPDALVVGVP 73
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ +G+ F + + +P DER +T A +
Sbjct: 74 LHPDGAAHENTARALKFAR-QLRGRFGLPVFEVDERYSTTEALSAGAADADAASA----- 127
Query: 137 DSIAAALILQEVLDRIS 153
+IL++ L +
Sbjct: 128 -----CIILEQFLRNLP 139
>gi|222112065|ref|YP_002554329.1| holliday junction resolvase-like protein [Acidovorax ebreus TPSY]
gi|221731509|gb|ACM34329.1| Holliday junction resolvase YqgF [Acidovorax ebreus TPSY]
Length = 139
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 12/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ +R + ++ I A ++G+P
Sbjct: 15 QSFLAFDYGLKRTGVAVGTRMLRSATPQGT-IRAEGDARFAQVAERIREWQPDALVVGVP 73
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ +G+ F + + +P DER +T A +
Sbjct: 74 LHPDGAAHENTARALKFAR-QLRGRFGLPVFEVDERYSTTEALSAGAADADAASA----- 127
Query: 137 DSIAAALILQEVLDRIS 153
+IL++ L +
Sbjct: 128 -----CIILEQFLRNLP 139
>gi|149193947|ref|ZP_01871045.1| Holliday junction resolvase-like protein [Caminibacter
mediatlanticus TB-2]
gi|149135900|gb|EDM24378.1| Holliday junction resolvase-like protein [Caminibacter
mediatlanticus TB-2]
Length = 130
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +ID+G KRIG+A + P P ++RK Q A E+ + + ++G+
Sbjct: 1 MERIIAIDVGLKRIGIAYT-PNASVVVPLNAIIRKNRNQAAKEVSNLLKEYKADILVVGI 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + F + + F DE T+ ++ + + KR +
Sbjct: 60 PKTNE----EMTKRIKHFTNLI---DFNGKIEFVDESFTSAIVEEEIK--GKIKHKRDGR 110
Query: 136 VDSIAAALILQEVLDRIS 153
+DS+AA IL+ L +
Sbjct: 111 IDSLAAKKILESFLASYN 128
>gi|78048618|ref|YP_364793.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325925530|ref|ZP_08186918.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118]
gi|146325624|sp|Q3BR20|RUVX_XANC5 RecName: Full=Putative Holliday junction resolvase
gi|78037048|emb|CAJ24785.1| putative Hollyday junction resolvase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544034|gb|EGD15429.1| hypothetical protein TIGR00250 [Xanthomonas perforans 91-118]
Length = 155
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++P+ + D+G++RIG+A+ A + + L
Sbjct: 6 AIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVYKQWRPDGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
++G PL ++ + P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 66 VVGDPLTLDDKDQPARKRAHAFGRQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 131 KRIQ 134
+R
Sbjct: 125 RRRD 128
>gi|289664581|ref|ZP_06486162.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. vasculorum NCPPB702]
gi|289670433|ref|ZP_06491508.1| Holliday junction resolvase-like protein [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 155
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + + D+G++RIG+A+ A + + L + +
Sbjct: 7 IRSDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWVALDRVHKEWHPDGLV 66
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRKK 131
IG PL ++ + P AF + +R +P V DER ++V AQ+ + RK+
Sbjct: 67 IGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRKR 125
Query: 132 RIQ 134
R
Sbjct: 126 RRD 128
>gi|294626288|ref|ZP_06704891.1| holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|294666666|ref|ZP_06731903.1| Holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292599434|gb|EFF43568.1| holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292603572|gb|EFF46986.1| Holliday junction resolvase-like protein [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 155
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++P+ + D+G++RIG+A+ A + L
Sbjct: 6 AIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWGALDRVYKQWRPDGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
+IG PL ++ + P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 66 VIGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 131 KRIQ 134
+R
Sbjct: 125 RRRD 128
>gi|166711264|ref|ZP_02242471.1| Holliday junction resolvase-like protein [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 155
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
++ P+ + D+G++RIG+A+ A + L
Sbjct: 6 AILPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHASGPDWGALDRVHKEWRPDGL 65
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
++G PL ++ + P AF + +R +P V DER ++V AQ+ + RK
Sbjct: 66 VVGDPLTLDDKDQPARKRAHAFARQLRERYA-LPVVLIDERSSSVEAAQRFARERADGRK 124
Query: 131 KRI 133
+R
Sbjct: 125 RRR 127
>gi|325916092|ref|ZP_08178381.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937]
gi|325537701|gb|EGD09408.1| hypothetical protein TIGR00250 [Xanthomonas vesicatoria ATCC 35937]
Length = 154
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
+++P+ + D+G++RIG+A+ A + + L
Sbjct: 4 AAIRPDGTVLGFDVGSRRIGVAVGTALGAGARAVAVINVHANGPDWVALDRVHKEWRPNG 63
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
++G PL ++ + P AF + + +P V DER ++V A Q
Sbjct: 64 LVVGDPLTLDDKDQPARKRAHAFAR-ELRARYALPVVLIDERSSSVEAAQRFARERADGS 122
Query: 131 KRI 133
KR
Sbjct: 123 KRR 125
>gi|134098623|ref|YP_001104284.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
gi|133911246|emb|CAM01359.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea NRRL
2338]
Length = 124
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 39 RFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNM 97
A P L R + L+ + + ++G+P + G GP + ++ +
Sbjct: 1 MLATPLVTLQRDVEGGGDLGRLVEIVAEHEVVEVVVGMPRTLAGRHGPAAEAAESYGTAL 60
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+R VP V+ DERLTTV+A ++L V KK+ VD AA ILQ LD
Sbjct: 61 AERIAPVPVVYSDERLTTVTASRMLSKRGVRGKKQRAVVDQAAAVEILQAWLDSR 115
>gi|319764293|ref|YP_004128230.1| holliday junction resolvase yqgf [Alicycliphilus denitrificans BC]
gi|317118854|gb|ADV01343.1| Holliday junction resolvase YqgF [Alicycliphilus denitrificans BC]
Length = 137
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ +R + + I A ++G+P
Sbjct: 13 QSFLAFDFGLKRTGVAVGTRMLRTATPQGT-IRAEGDARFAAVAERIREWQPDALVVGVP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + + + DER +T A +
Sbjct: 72 CHPDGAPHENTARALKFAR-QLRGRFGLQVFEVDERYSTTEALAAGAGDADAASA----- 125
Query: 137 DSIAAALILQEVLDRIS 153
+IL++ L +
Sbjct: 126 -----CIILEQFLRNLP 137
>gi|193214622|ref|YP_001995821.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
35110]
gi|193088099|gb|ACF13374.1| Holliday junction resolvase YqgF [Chloroherpeton thalassium ATCC
35110]
Length = 143
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + +ID GTKR GLA +DP + F+ + + E+ E ++G
Sbjct: 7 KKRVLAIDFGTKRCGLAKTDPFQLFSQTVGTFEEATLYKQIREIEKLDGIE---KILVGY 63
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--I 133
P N +GS + F+ + +P DE ++ +A ++LI RK R
Sbjct: 64 PTNGDGSANHTTKAVDGFLERLSLEFSTIPIEPIDEFGSSKAAMRLLIASGEKRKSRQKK 123
Query: 134 QKVDSIAAALILQEVLDRIS 153
++DS AAAL+LQ L+R
Sbjct: 124 GRLDSAAAALLLQNYLERQR 143
>gi|262341228|ref|YP_003284083.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272565|gb|ACY40473.1| Holliday junction resolvase-like protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 140
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +D G GL+I+D + FA + +K+ F+ E I +IGL
Sbjct: 1 MAKILGMDYGKVITGLSITDDEQIFAFGLDSVPTEKLMSFLES---FLYHEKIDKIVIGL 57
Query: 76 PLNMNGS-EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
P +N E + F+++ R + DER T+ A +I++ + +K+R +
Sbjct: 58 PKKLNNQKETLIETDIQRFINHFRVRFPKILIERLDERFTSKMAFNAMIELGLKKKRRKK 117
Query: 135 KV-DSIAAALILQEVL 149
+ + I+A +ILQ L
Sbjct: 118 VILNQISATIILQSYL 133
>gi|301165958|emb|CBW25532.1| putative Holliday junction resolvase [Bacteriovorax marinus SJ]
Length = 153
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 19 IASIDLGTKRIGLAISDPGR-RFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I SID G K GLA PGR F R ++ + Q EL I + ++G+P
Sbjct: 19 ILSIDYGLKVTGLACYCPGREPFPQARGRIIYQSDEQLIDELSLIIEEDFFEVIVLGIPF 78
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM-NVSRKKRIQKV 136
++G+E R F + ++ + DE L++ +AQ+ + + + K +++
Sbjct: 79 YLDGNESEMTKKVRQFKTLLEEKFSDLQIYEQDETLSSNAAQERMKNSPQFNFKVDPKRI 138
Query: 137 DSIAAALILQEVL 149
D +AA +IL++ +
Sbjct: 139 DEVAATIILEDFM 151
>gi|194364719|ref|YP_002027329.1| Holliday junction resolvase-like protein [Stenotrophomonas
maltophilia R551-3]
gi|194347523|gb|ACF50646.1| Holliday junction resolvase YqgF [Stenotrophomonas maltophilia
R551-3]
Length = 164
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
++ + + D+G++RIG+AI A + + I +
Sbjct: 16 IRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLIKEWKPDGLV 75
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRKK 131
+G PL ++G + P + F + +R +P V DER ++V A++ ++ RK+
Sbjct: 76 VGDPLTLDGQDQPNRKRAQGFARQLRERFK-LPVVMIDERSSSVEAARRFAVERAEGRKR 134
Query: 132 RI 133
R
Sbjct: 135 RR 136
>gi|300870810|ref|YP_003785681.1| Holliday junction resolvase-like protein [Brachyspira pilosicoli
95/1000]
gi|300688509|gb|ADK31180.1| holliday junction resolvase-like protein [Brachyspira pilosicoli
95/1000]
Length = 137
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K+ G A D + P + + L+ I + I + GLPL+
Sbjct: 3 ILAVDFGRKKTGTAFMDMNIKIPFPCKLIEESNARKVKRALMDIIEEKKIDTVVFGLPLS 62
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G E R F ++ + V V VF DE T+ A IL S KK+ D
Sbjct: 63 DEGKESEWCAEIRRFSEFLL-KSVKVNIVFVDEYGTSKEADFILRGKKKSVKKKAN--DL 119
Query: 139 IAAALILQEVLDRIS 153
IAA LIL+ L+ ++
Sbjct: 120 IAAVLILENYLNILN 134
>gi|190573126|ref|YP_001970971.1| Holliday junction resolvase-like protein [Stenotrophomonas
maltophilia K279a]
gi|190011048|emb|CAQ44657.1| putative resolvase [Stenotrophomonas maltophilia K279a]
Length = 164
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+++ + + D+G++RIG+AI A + + +
Sbjct: 15 AIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLLKEWKPDGL 74
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVSRK 130
++G PL ++G + P + F + +R +P V DER ++V A++ ++ RK
Sbjct: 75 VVGDPLTLDGQDQPNRKRAQGFARQLRERFK-LPVVMIDERSSSVEAARRFAVERAEGRK 133
Query: 131 KRI 133
+R
Sbjct: 134 RRR 136
>gi|297242855|ref|ZP_06926793.1| endonuclease [Gardnerella vaginalis AMD]
gi|296889066|gb|EFH27800.1| endonuclease [Gardnerella vaginalis AMD]
Length = 124
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 51 KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRK--------- 101
+ E+L I N+ +IGLPL ++G+EG + N+I R
Sbjct: 6 DSFRAIDEVLEVIEDNNVEKVVIGLPLQLDGTEGKSAKKALRWGKNLIKRMQILHDEKDW 65
Query: 102 ---VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
V+ DERLTTVSA + L+ ++S KK VD +A LILQ LD
Sbjct: 66 ALDYMPEVVWKDERLTTVSAHRQLLQADLSTKKHRPMVDQQSAVLILQSALDS 118
>gi|254482697|ref|ZP_05095935.1| conserved hypothetical protein TIGR00250 [marine gamma
proteobacterium HTCC2148]
gi|214037056|gb|EEB77725.1| conserved hypothetical protein TIGR00250 [marine gamma
proteobacterium HTCC2148]
Length = 98
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
+ + + ++G PLNM+GS F + ++ +P DERL++ A
Sbjct: 1 MAALVDEWQPDLLVVGEPLNMDGSVSELSEKAHKFGR-RLGGRLNLPVQMVDERLSSFEA 59
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
+Q + +DS+AA LILQ L
Sbjct: 60 KQQSRERGHGGDYNKNPIDSLAAELILQTWL 90
>gi|12045147|ref|NP_072958.1| hypothetical protein MG_505 [Mycoplasma genitalium G37]
gi|6226357|sp|Q9ZB76|RUVX_MYCGE RecName: Full=Putative Holliday junction resolvase
gi|3844876|gb|AAC71518.1| conserved hypothetical protein [Mycoplasma genitalium G37]
gi|166078883|gb|ABY79501.1| conserved hypothetical protein [synthetic Mycoplasma genitalium
JCVI-1.0]
Length = 138
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 55/134 (41%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +ID G K+IG AI++ ++ K +TA+ L + +
Sbjct: 1 MKYILAIDFGLKKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIV 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ +++++ +P + DE TT + + LI M++ K +
Sbjct: 61 IGFPKFHYYSDIQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKA 120
Query: 136 VDSIAAALILQEVL 149
D++AA LIL+
Sbjct: 121 KDTLAAVLILERFF 134
>gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
SUMu002]
gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
SUMu004]
gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
SUMu006]
gi|308375552|ref|ZP_07444315.2| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
SUMu007]
gi|308377049|ref|ZP_07668417.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
SUMu008]
gi|308378414|ref|ZP_07668743.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
SUMu009]
gi|308379237|ref|ZP_07485604.2| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
SUMu010]
gi|308380399|ref|ZP_07669183.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
SUMu011]
gi|308326527|gb|EFP15378.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis
SUMu002]
gi|308333565|gb|EFP22416.1| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis
SUMu004]
gi|308341258|gb|EFP30109.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis
SUMu006]
gi|308345968|gb|EFP34819.1| hypothetical protein TMGG_02319 [Mycobacterium tuberculosis
SUMu007]
gi|308349065|gb|EFP37916.1| hypothetical protein TMHG_01748 [Mycobacterium tuberculosis
SUMu008]
gi|308352657|gb|EFP41508.1| hypothetical protein TMIG_03343 [Mycobacterium tuberculosis
SUMu009]
gi|308357633|gb|EFP46484.1| hypothetical protein TMJG_01534 [Mycobacterium tuberculosis
SUMu010]
gi|308361575|gb|EFP50426.1| hypothetical protein TMKG_02983 [Mycobacterium tuberculosis
SUMu011]
Length = 122
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
+ R + + L + I+GLP + G + R
Sbjct: 1 METVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSP 60
Query: 104 VPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESSKG 160
P DERLTTVSAQ+ L V ++ +D AA ILQ LD L + G
Sbjct: 61 TPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDER--LAAMAG 115
>gi|256370664|ref|YP_003108489.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri SMDSEM]
gi|256009456|gb|ACU52816.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri SMDSEM]
Length = 138
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID GTKRIGL+I P R A L + +I + I +IG
Sbjct: 1 MSKILCIDFGTKRIGLSI--PIRSIAFGLETLETVDYNHLIATIDKYIKNKYIDTLVIGH 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133
PL + S P F++ + + DER ++ A LI+ N ++K+
Sbjct: 59 PLKSDKSLFPIEKDIIKFINFFKTKYPKLIIKRIDERFSSKIANYFLINSFFNKKKRKQK 118
Query: 134 QKVDSIAAALILQEVL 149
+ +D I+A L+LQ+ +
Sbjct: 119 KILDQISAILLLQDFI 134
>gi|224373180|ref|YP_002607552.1| Holliday junction resolvase-like protein [Nautilia profundicola
AmH]
gi|223588874|gb|ACM92610.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 130
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 11/134 (8%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ID+G KRIG+A S+ P P ++RK Q A + + I ++GL
Sbjct: 1 MEKIIGIDVGLKRIGVAFSN--GSVVVPLPAIIRKNRNQAANDTMKIINEYKADTLVVGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL R FV + VF DE T+ ++ + V + K+ +
Sbjct: 59 PLTNE----EMQRRIRHFVSLL---PFEGKIVFVDESYTSAEVEEEIK--GVIKHKKDGR 109
Query: 136 VDSIAAALILQEVL 149
+DS+ A +++ L
Sbjct: 110 IDSLVAKKLIENYL 123
>gi|108804198|ref|YP_644135.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
9941]
gi|124107443|sp|Q1AWA5|RUVX_RUBXD RecName: Full=Putative Holliday junction resolvase
gi|108765441|gb|ABG04323.1| Holliday junction resolvase YqgF [Rubrobacter xylanophilus DSM
9941]
Length = 139
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P +A++DLG G+A+SDP R A P + ++ + E + ++
Sbjct: 3 PPEGRVAALDLGEVWTGVAVSDPTRTLARPLEVVRTSELPGVL---RRLVREEGVGEVLV 59
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLP + G G + + ++ V FV WDERLTT L + ++
Sbjct: 60 GLPRTLRGEVGFQARRVSDRLSSLRAGFPEVRFVEWDERLTTKVVSGPLREGRRRGRR-- 117
Query: 134 QKVDSIAAALILQEVLD 150
++VD +AAA +LQE L+
Sbjct: 118 ERVDHLAAARMLQEYLE 134
>gi|218288664|ref|ZP_03492941.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
LAA1]
gi|218241321|gb|EED08496.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
LAA1]
Length = 105
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
+ E + ++G PL+M+G F + + +P +DERLTTVSA
Sbjct: 1 MADLSRREEVGRIVVGRPLHMSGQPSEMTSRAEKFARM-LAARTGLPVDLYDERLTTVSA 59
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
++ILI+ NV R++R VD+ AA ++L++ L
Sbjct: 60 ERILIEQNVRRRERRATVDAAAAQVLLEDYL 90
>gi|254523604|ref|ZP_05135659.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp.
SKA14]
gi|219721195|gb|EED39720.1| conserved hypothetical protein TIGR00250 [Stenotrophomonas sp.
SKA14]
Length = 155
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+++ + + D+G++RIG+AI A + + +
Sbjct: 4 AAAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWAAIERLLKEWKPD 63
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS-AQQILIDMNVS 128
++G PL ++G P + F + +R +P V DER ++V A++ ++
Sbjct: 64 GLVVGDPLTLDGQNQPNRKRAQGFARQLRERFK-LPVVMIDERSSSVEAARRFAVERAEG 122
Query: 129 RKKRI 133
RK+R
Sbjct: 123 RKRRR 127
>gi|330826424|ref|YP_004389727.1| Holliday junction resolvase [Alicycliphilus denitrificans K601]
gi|329311796|gb|AEB86211.1| Holliday junction resolvase [Alicycliphilus denitrificans K601]
Length = 139
Score = 83.8 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 10/137 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A+ R A P+ +R + + I A ++G+P
Sbjct: 13 QSFLAFDFGLKRTGVAVGTRMLRTATPQGT-IRAEGDARFAAVAERIREWQPDALVVGVP 71
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ F + + + DER +T A +
Sbjct: 72 CHPDGAPHENTARALKFSR-QLRGRFGLQVFEVDERYSTTEALAAGAGDADADAASA--- 127
Query: 137 DSIAAALILQEVLDRIS 153
+IL++ L +
Sbjct: 128 -----CIILEQFLRNLP 139
>gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group]
Length = 237
Score = 83.8 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+A+ G P L + + LL + I+GLP++
Sbjct: 77 LGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM-LLDIAQQQEADELIVGLPVSA 134
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GSE P+ + R+ V + + DE TT+ A + +I V R R K D
Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEHGTTIDALEFMISRGVKRSARDVKSD 194
Query: 138 SIAAALILQEVL 149
+ +A +IL+
Sbjct: 195 AYSAMMILERYF 206
>gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis]
Length = 227
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV---RKKVTQTALELLSFITTENIAAFII 73
+ +D G + +GLA+S P L + Q A +L+ E A ++
Sbjct: 28 RRALGLDYGRRVVGLAVS-TLGLAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVL 86
Query: 74 GLPLNMNG------SEGPRVHSTRAFVHNM--IDRKVYVPFVFWDERLTTVSAQQILIDM 125
GLP+ + G ++ + R F NM + +P DER +T++A+++L
Sbjct: 87 GLPVTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASS 146
Query: 126 NVSRKKRIQKVDSIAAALILQEVL 149
R +++DS+AAA+IL+
Sbjct: 147 GSRRSTLSKRMDSVAAAVILESFF 170
>gi|161833711|ref|YP_001597907.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri GWSS]
gi|189046110|sp|A8Z5W0|RUVX_SULMW RecName: Full=Putative Holliday junction resolvase
gi|152206201|gb|ABS30511.1| conserved hypothetical Holliday junction resolvase-like protein
[Candidatus Sulcia muelleri GWSS]
Length = 138
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G KRIGL+I++ R A + L ++ E+I +IGL
Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFGLDTV---NSNNIICTLYKYLKYEDIDTIVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P+ + S P + F+ + ++ + DER T+ A LI+ + + +
Sbjct: 58 PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117
Query: 136 -----VDSIAAALILQEVLDR 151
D I+A ++LQE +
Sbjct: 118 QNFLDKDKISATILLQEYIKY 138
>gi|293977821|ref|YP_003543251.1| hypothetical protein DMIN_00920 [Candidatus Sulcia muelleri DMIN]
gi|292667752|gb|ADE35387.1| conserved hypothetical protein [Candidatus Sulcia muelleri DMIN]
Length = 138
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G KRIGL+I++ R A + L ++ E+I +IGL
Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFGLDTV---NSNNIICTLYKYLKYEDIDTIVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR---KKR 132
P+ + S P + F+ + ++ + DER T+ A LI+ + KK
Sbjct: 58 PIRFDNSLFPIEKDIKKFIKIINNKYPKLIIKRIDERFTSKIANYYLINTRLKINQLKKN 117
Query: 133 IQKV--DSIAAALILQEVLDR 151
+ D I+A ++LQE +
Sbjct: 118 KNFLDKDKISATILLQEYIKY 138
>gi|194246642|ref|YP_002004281.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
gi|193806999|emb|CAP18434.1| Putative Holliday junction resolvase [Candidatus Phytoplasma mali]
Length = 145
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLP 76
P +DLG K +G++IS+ G + + L+ L I +NI I+GLP
Sbjct: 6 PYLGLDLGEKTLGISISEAGFFSVNFKTLNFPNHQYNYLLKPLKILIIQKNIKTIILGLP 65
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+MN G + + F + D V + WDERL+T + L + N ++KK Q
Sbjct: 66 KHMNNDLGVKSLISINFKKRLEDYLKLDVKIILWDERLSTKQSLIFLKNNNKNKKKIKQL 125
Query: 136 VDSIAAALILQEVLDRISFL 155
D +AA ILQ LD S +
Sbjct: 126 KDEVAAMFILQNFLDYQSNI 145
>gi|332524147|ref|ZP_08400377.1| Holliday junction resolvase-like protein [Rubrivivax
benzoatilyticus JA2]
gi|332107486|gb|EGJ08710.1| Holliday junction resolvase-like protein [Rubrivivax
benzoatilyticus JA2]
Length = 136
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G +R+G+A+ + A P + + + I A ++G+P
Sbjct: 11 RSFLAFDFGVRRVGVAVGNTLLAEARPLKTVAAE-GDARFEAIARLIDEWQPDALVVGVP 69
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
+ +G+E R F + R +P DER TTV
Sbjct: 70 FHPDGAEHDNTRRARRFARQLHGRFR-LPVHEVDERYTTV 108
>gi|144575317|gb|AAZ53576.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
gi|312601160|gb|ADQ90415.1| Putative Holliday junction resolvase [Mycoplasma hyopneumoniae 168]
Length = 91
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+ I+ ++G PL + G PR F + + + VF DERLTT AQ L
Sbjct: 1 MKEYPISILVLGYPLTLAGKISPRTKMVEYFADLV-KKNYEIKVVFQDERLTTKQAQTFL 59
Query: 123 IDMNVSRKKRIQKVDSIAAALILQEVLD 150
+D+ +S KKR + +D +AA +IL+ L+
Sbjct: 60 LDLGISFKKRQKVIDKLAAQIILERFLN 87
>gi|239917772|ref|YP_002957330.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
gi|281413734|ref|ZP_06245476.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
gi|239838979|gb|ACS30776.1| putative Holliday junction resolvase [Micrococcus luteus NCTC 2665]
Length = 189
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPF-LVRKKVTQTALELLSFITTENIAAFII 73
+D+G R+G+A +DP A P + + EL++ ++ A +
Sbjct: 32 RRGRTLGVDVGRARVGVASADPDGLIATPVATLRRDARRRRDVDELVAHARELDVVAVYV 91
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRK----VYVPFVFWDERLTTVSAQQILIDMNVSR 129
GLP+N+ G P + + VP DERL+TVSAQ L S
Sbjct: 92 GLPVNLRGEHTPSTQDALDYADAVAAALAEAGHPVPLRLVDERLSTVSAQAGLRAAGRSV 151
Query: 130 KKRIQKVD 137
K +D
Sbjct: 152 KDSRGVID 159
>gi|121606236|ref|YP_983565.1| Holliday junction resolvase-like protein [Polaromonas
naphthalenivorans CJ2]
gi|120595205|gb|ABM38644.1| Holliday junction resolvase YqgF [Polaromonas naphthalenivorans
CJ2]
Length = 156
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 12/138 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G KR G+A + R A P+ + + V + L I A ++G+P
Sbjct: 30 QTFLAFDYGFKRTGVASGNILTRTATPQATIAAEGVARFPLIQAR-IKEWQPDALVVGIP 88
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ + F + + + DER +T A +
Sbjct: 89 FHPDGASHDNTVRAQKFAR-QLRGRFGLQVFEVDERYSTTEA----LASGAKDADAASA- 142
Query: 137 DSIAAALILQEVLDRISF 154
++IL++ L +
Sbjct: 143 -----SIILEQFLRSLPH 155
>gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group]
gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group]
gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group]
gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 237
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+A+ G P L + + LL + I+GLP++
Sbjct: 77 LGVDLGEARTGVAVG-RGITLPRPLTVLKLRGQKLELM-LLDIAQQQEADELIVGLPVSA 134
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYV--PFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GSE P+ + R+ V + + DE TT+ A + +I V R R K D
Sbjct: 135 DGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEYGTTIDALEFMISRGVKRSARDVKSD 194
Query: 138 SIAAALILQEVL 149
+ +A +IL+
Sbjct: 195 AYSAMMILERYF 206
>gi|254796406|ref|YP_003081242.1| hypothetical protein NRI_0006 [Neorickettsia risticii str.
Illinois]
gi|254589643|gb|ACT69005.1| conserved hypothetical protein [Neorickettsia risticii str.
Illinois]
Length = 159
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ + ++ I SID G + IG+A+SDP R+ A ++
Sbjct: 1 MITFDLQKFLGAIGTGG-IVSIDPGKRTIGVAVSDPELRYIQNYFQFASHGRGADASYIM 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ + I+G P + + G +HS F + P + DE +T
Sbjct: 60 KVVSD--FSGIIVGTPFSHIRNNG-WLHSIDKFAQ-KLSEITKKPILMCDESSSTSDVMV 115
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQ 146
+L ++SR ++ + D IAA IL+
Sbjct: 116 LL--GSLSRSRQKKWKDKIAACCILE 139
>gi|319787649|ref|YP_004147124.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis
11-1]
gi|317466161|gb|ADV27893.1| Holliday junction resolvase YqgF [Pseudoxanthomonas suwonensis
11-1]
Length = 156
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P + D+G++RIG+A+ A + L + I+
Sbjct: 11 SPEAIVLGFDVGSRRIGVAVGSAFGG-ARAVAVVNVHAAGPDWAALDRLRSQWGPGGLIV 69
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS---AQQILIDMNVSRK 130
G PL ++G + P RAF H + +R +P DER ++V R+
Sbjct: 70 GDPLTLDGEDQPARRRARAFAHALRER-YGLPVGMVDERSSSVEAAQRFARARASGTRRR 128
Query: 131 KRIQKVDSIAAALILQEVL 149
+ + +D+ AAA+I++ L
Sbjct: 129 RDAENLDAEAAAVIIERWL 147
>gi|13357930|ref|NP_078204.1| hypothetical protein UU370 [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|167971754|ref|ZP_02554031.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
gi|168282623|ref|ZP_02690290.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gi|168308781|ref|ZP_02691456.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gi|170761903|ref|YP_001752453.1| hypothetical protein UPA3_0386 [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|32130073|sp|Q9PQC1|RUVX_UREPA RecName: Full=Putative Holliday junction resolvase
gi|189046111|sp|B1AJ09|RUVX_UREP2 RecName: Full=Putative Holliday junction resolvase
gi|11356807|pir||E82899 conserved hypothetical UU370 [imported] - Ureaplasma urealyticum
gi|6899352|gb|AAF30779.1|AE002134_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|168827480|gb|ACA32742.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
ATCC 27815]
gi|171902629|gb|EDT48918.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gi|182675714|gb|EDT87619.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gi|186701151|gb|EDU19433.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
ATCC 27818]
Length = 147
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA----LELLSFITTENIAAFI 72
++DLGTK G AISD A + ++ TA ++ + I +
Sbjct: 1 MRKLALDLGTKSCGFAISDLLGIIASGLDNFIYEENDFTAVLAKIDEIMINYHHEIDTIV 60
Query: 73 IGLPLN-MNGSEGPRVHSTRAFVHNMIDRKVYVP---FVFWDERLTTVSAQQILIDMNVS 128
+G P N +GS+ R + +F + + V+ DER +T A Q L + V
Sbjct: 61 LGYPTNVYDGSKNERTYLIESFYALLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVK 120
Query: 129 RKKRIQKVDSIAAALILQEVL 149
K + D ++A +IL+ L
Sbjct: 121 AAKIKKVKDKMSAVVILESYL 141
>gi|296274383|ref|YP_003657014.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
gi|296098557|gb|ADG94507.1| Holliday junction resolvase YqgF [Arcobacter nitrofigilis DSM 7299]
Length = 126
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ASID+G KRIG+A+S + P+ ++RK Q + ++ +F+ I I+G P
Sbjct: 1 MKLASIDIGLKRIGVALS-LTKTIVTPQTAILRKNRNQASNDVDNFLKEWEIEKLIVGFP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ + + + FV+ + VF +E ++++ A++++ + KR +V
Sbjct: 60 SSSDDMQ----KRVKHFVNLLK---FEGEIVFQEENMSSIEAEELMK--GDIKYKRDGRV 110
Query: 137 DSIAAALILQEVL 149
DS+AA +IL+ L
Sbjct: 111 DSLAAKIILERYL 123
>gi|315635642|ref|ZP_07890905.1| Holliday junction resolvase family protein [Arcobacter butzleri
JV22]
gi|315479939|gb|EFU70609.1| Holliday junction resolvase family protein [Arcobacter butzleri
JV22]
Length = 126
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ASID+G KRIG+AI P+ ++RK Q A ++ +F+ I I+G P
Sbjct: 1 MKLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ + + FV+ + + +P+ F +E ++++ A++++ + KR +V
Sbjct: 60 TSSEDMQN----RIKHFVNLLK---LQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRV 110
Query: 137 DSIAAALILQEVL 149
DS+AA +IL+ L
Sbjct: 111 DSLAAKIILERYL 123
>gi|157736482|ref|YP_001489165.1| Holliday junction resolvase-like protein [Arcobacter butzleri
RM4018]
gi|157698336|gb|ABV66496.1| conserved hypothetical protein, putative Holliday junction
resolvase [Arcobacter butzleri RM4018]
Length = 126
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ASID+G KRIG+AI P+ ++RK Q A ++ +F+ I I+G P
Sbjct: 1 MKLASIDVGLKRIGVAIC-LTSDIVTPQNAILRKNRNQAANDVNTFLKEWEIEKLIVGFP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ + + FV+ + ++ +P+ F +E ++++ A++++ + KR +V
Sbjct: 60 TSSEDMQN----RIKHFVNLL---ELQIPYEFCEENMSSIEAEELIK--GEIKYKRDGRV 110
Query: 137 DSIAAALILQEVL 149
DS+AA +IL+ L
Sbjct: 111 DSLAAKIILERYL 123
>gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
Length = 127
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GL
Sbjct: 1 MMRALALDLGLKRIGLAL--YVENIAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P SE + F+ + + +F DE T+ AQ + + + +K+ K
Sbjct: 59 P-KGGASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQGLGVA---NSRKKDGK 111
Query: 136 VDSIAAALILQEVL 149
+DS+AA ++L+
Sbjct: 112 LDSLAALIMLRGYF 125
>gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
Length = 127
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++DLG KRIGLA+ A P ++RK Q A E+ I I+ I+GL
Sbjct: 1 MMRALALDLGLKRIGLAL--YVENIAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGL 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P SE + F+ + + +F DE T+ AQ + + + +K+ K
Sbjct: 59 P-KGGASEVEMTKRVQHFISLL---EFDGEVIFVDEAYTSKEAQDLGVA---NSRKKDGK 111
Query: 136 VDSIAAALILQEVL 149
+DS+AA ++L+
Sbjct: 112 LDSLAALIMLRGYF 125
>gi|307721583|ref|YP_003892723.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
16294]
gi|306979676|gb|ADN09711.1| Holliday junction resolvase YqgF [Sulfurimonas autotrophica DSM
16294]
Length = 132
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+IDLG KRIGLA S + P P ++RK Q + E+ I A +IG+P
Sbjct: 1 MKYIAIDLGLKRIGLAYS-AHKDIVTPLPAVIRKNRNQASSEVKKIIQEWEADAVVIGVP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L SE F++ + ++ DE +++ A+ ++ + R +V
Sbjct: 60 L-GGSSEDEMRRRIEHFMNLV---DFEGKVLYQDEAGSSLEAENMMK--GKIKYIRDGRV 113
Query: 137 DSIAAALILQEVL 149
DS++A +ILQ L
Sbjct: 114 DSLSAMVILQRFL 126
>gi|78776727|ref|YP_393042.1| Holliday junction resolvase-like protein [Sulfurimonas
denitrificans DSM 1251]
gi|146325623|sp|Q30T74|RUVX_SULDN RecName: Full=Putative Holliday junction resolvase
gi|78497267|gb|ABB43807.1| Holliday junction resolvase YqgF [Sulfurimonas denitrificans DSM
1251]
Length = 130
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+IDLG KRIGLA S + P + RK Q A ++ + + A ++G+P
Sbjct: 1 MKYIAIDLGLKRIGLAYS-AHKDLVTPLKAVERKNRDQAARDVKKTLIEWEVDAVVVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L G R H M + DE +++ A+ ++ + R ++
Sbjct: 60 L---GGSSEDEMR-RRVAHFMNLVAFEGEIFYQDESNSSIEAESMMR--GEIKYIRDGRI 113
Query: 137 DSIAAALILQEVL 149
DSI+A +ILQ L
Sbjct: 114 DSISAMIILQRYL 126
>gi|321310987|ref|YP_004193316.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
Langford 1]
gi|319802831|emb|CBY93477.1| holliday junction resolvase YqgF [Mycoplasma haemofelis str.
Langford 1]
Length = 143
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ S+D+GTK++G+A+S + P + N I G+
Sbjct: 1 MRVLSLDIGTKKVGIALSSADQSLIFPVGKIRFDNFKGLIFFEKLKTELRNFWEEI-GVA 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ SEG V S V M+ F E +++ + L +N S K +K+
Sbjct: 60 VIGKASEGNSVLSQIDQVSRMLKAWTDWDIKFISEDMSSSDSWSFLKSLNFSSNKAREKL 119
Query: 137 DSIAAALILQEVLDRIS 153
DS +A +IL++ D I+
Sbjct: 120 DSYSALIILKDYFDSIN 136
>gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
Length = 239
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
IDLG R GLAIS L +K+ LE+ FIIGLP +
Sbjct: 77 LGIDLGLSRTGLAISKGFSFKPLTVLELRGQKLETRLLEIAEDEE---ADEFIIGLPKSW 133
Query: 80 NGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E + + R+ + R + DE T+ A +I++ +S+ R + +D
Sbjct: 134 DGKETSQCNKVRSVAGRIAVRAAERGWRVYLQDEHGTSTDATYWMINVGLSKGARQKSID 193
Query: 138 SIAAALILQEV 148
+ AA ++L+
Sbjct: 194 AYAAVMVLERY 204
>gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 238
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+AIS P L + LL E + FIIGLP +
Sbjct: 68 LGVDLGLSRTGVAIS--KGYTVKPLTVLKSRGQKLE-TRLLEIAEEEEVDEFIIGLPRSS 124
Query: 80 NGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E + + R+ + + +DE TT A +I M +S+ +R + D
Sbjct: 125 DGKETIQSNKIRSVAGRLAVQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 184
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 185 AYAAVILLERYF 196
>gi|332295476|ref|YP_004437399.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
gi|332178579|gb|AEE14268.1| Holliday junction resolvase [Thermodesulfobium narugense DSM 14796]
Length = 140
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
ID G +GL+ISDP + P + R + ++ I +++ A ++G P
Sbjct: 1 MRYLGIDWGVTHLGLSISDPEEKIVFPLGTITRTTWDKDLNKIKQIIEEKSVEAIVLGDP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L + + V ++ + V + +DER +++ A L + K K+
Sbjct: 61 LRTD--FSSASSKSILKVKKKLE-TIGVKVILFDERYSSIEA---LKLQKILGNKDKGKI 114
Query: 137 DSIAAALILQEVLDRISFLESSKG 160
IA++++L+ LD +S + + G
Sbjct: 115 HEIASSIVLKSFLDFLSNTKKNIG 138
>gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307]
gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307]
Length = 151
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 9 LVKSLKPNQP-IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
+ P + ++D+G +RIGLA DP P P L R + Q +L +
Sbjct: 1 MALKQPPQARSVLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRR 60
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
A ++GLPL+ +G+ P+ R + + + + +P + +E ++ +A + +
Sbjct: 61 CLALVVGLPLDPDGAFTPQAEHCRRYGE-RLAQSLSLPVAWVNEHSSSWAAAE---QHGL 116
Query: 128 SRKKRIQKVDS 138
R ++DS
Sbjct: 117 HG-DRTGRLDS 126
>gi|167972674|ref|ZP_02554951.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|167974599|ref|ZP_02556876.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|167976242|ref|ZP_02558519.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|167988740|ref|ZP_02570411.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|168363072|ref|ZP_02696246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
gi|195867885|ref|ZP_03079884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
str. ATCC 33175]
gi|198273722|ref|ZP_03206257.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209554058|ref|YP_002284772.1| hypothetical protein UUR10_0379 [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225550702|ref|ZP_03771651.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
str. ATCC 27814]
gi|225551167|ref|ZP_03772113.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
gi|226695314|sp|B5ZBI2|RUVX_UREU1 RecName: Full=Putative Holliday junction resolvase
gi|171903041|gb|EDT49330.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
gi|184209165|gb|EDU06208.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gi|188018995|gb|EDU57035.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
str. ATCC 27819]
gi|188997817|gb|EDU66914.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
str. ATCC 33695]
gi|195659638|gb|EDX53018.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
str. ATCC 33696]
gi|195660462|gb|EDX53720.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
str. ATCC 33175]
gi|198249750|gb|EDY74531.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
str. ATCC 27816]
gi|209541559|gb|ACI59788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
str. ATCC 33699]
gi|225378982|gb|EEH01347.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
str. ATCC 27618]
gi|225379856|gb|EEH02218.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
str. ATCC 27814]
Length = 147
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTA----LELLSFITTENIAAFI 72
++DLGTK G AISD A + ++ A ++ + I +
Sbjct: 1 MRKLALDLGTKSCGFAISDLLGIIASGLDNFIYEENDFIAVLAKIDEIMINYHHEIDTIV 60
Query: 73 IGLPLN-MNGSEGPRVHSTRAF---VHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS 128
+G P N +GS+ R + +F + + V+ DER +T A Q L + V
Sbjct: 61 LGYPTNVYDGSKNKRTYLIESFYTLLKQHFLNHEKIKIVYEDERFSTKIATQRLKNSCVK 120
Query: 129 RKKRIQKVDSIAAALILQEVL 149
K + D ++A +IL+ L
Sbjct: 121 AAKIKKVKDKMSAVVILESYL 141
>gi|285018920|ref|YP_003376631.1| holliday junction resolvase [Xanthomonas albilineans GPE PC73]
gi|283474138|emb|CBA16639.1| putative holliday junction resolvase protein [Xanthomonas
albilineans]
Length = 165
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+L+ + + D+G +RIG+A+ A + L
Sbjct: 14 AATLRHDGTVLGFDVGHRRIGVAVGSRFGSGARALAVIDVHAQGPDWPALDRLHAQWRPH 73
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
++G PL ++G++ P AF + + +P V DER ++V A Q
Sbjct: 74 GLVVGDPLTLDGADQPNRKRAHAFAR-ELGARYCLPVVLVDERSSSVEAAQR 124
>gi|223039680|ref|ZP_03609966.1| conserved hypothetical protein [Campylobacter rectus RM3267]
gi|222879063|gb|EEF14158.1| conserved hypothetical protein [Campylobacter rectus RM3267]
Length = 124
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID+G KRIG+A+ R+ P+ ++RK Q A ++ + + ++G+PL
Sbjct: 3 IMAIDVGLKRIGVAL--AVRQTVMPQTPVLRKNRNQAARDVSAVLREYGAKKLVVGVPL- 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
SE FV + + V+ DE +++ A +I + +R ++DS
Sbjct: 60 GGPSEDEMRRRIEHFVSLL---EFDGEVVYQDEAMSSFEASEIYAES-----RRDGRLDS 111
Query: 139 IAAALILQEVL 149
IAA +IL+ L
Sbjct: 112 IAAMIILKRYL 122
>gi|222823946|ref|YP_002575520.1| conserved hypothetical protein (UPF0081 domain protein)
[Campylobacter lari RM2100]
gi|254767502|sp|B9KCI0|RUVX_CAMLR RecName: Full=Putative Holliday junction resolvase
gi|222539168|gb|ACM64269.1| conserved hypothetical protein (UPF0081 domain protein)
[Campylobacter lari RM2100]
Length = 128
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ + A P ++RK Q A E+ +I ++ ++G+PL
Sbjct: 4 LALDIGLKRIGVALC-VNKSIAMPLEAIIRKNRNQAANEVKKYIKEYDVNTLVVGVPL-G 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
SE F+ + F DE ++ +AQ++ + V+ KK+ K+DS+
Sbjct: 62 GSSEDEMRKRVEHFISLL---DFDKEVFFVDESFSSKNAQELGM---VNLKKKDGKLDSL 115
Query: 140 AAALILQEV 148
AA L L++
Sbjct: 116 AAYLFLKDF 124
>gi|194476596|ref|YP_002048775.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
gi|171191603|gb|ACB42565.1| Holliday junction resolvase YqgF [Paulinella chromatophora]
Length = 141
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ L I +D+G RIG+A D P L R L L I+ ++
Sbjct: 1 MNYLSQPCSILCLDVGRYRIGMAGCDSLYFSISLLPALHRNNFETDLLSLKYLISERSVE 60
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
A +IG+PLN + R + + + + + +P + +E +T S D
Sbjct: 61 ALVIGIPLNDLAQITKQAIYCRRYGKH-LAQTLRLPVAWVNENGSTWS----TSDQYKIY 115
Query: 130 KKRIQKVDSIAAALILQEVLDRIS 153
+ ++DS+ AAL+L++ + +
Sbjct: 116 NDKSGRLDSMVAALLLEQWIKERN 139
>gi|307128596|ref|YP_003880626.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri CARI]
gi|306483058|gb|ADM89928.1| Holliday junction resolvase-like protein [Candidatus Sulcia
muelleri CARI]
Length = 138
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I ID G KRIGL+I++ R A + + T L + E+I +IGL
Sbjct: 1 MSKILCIDYGKKRIGLSITNSIRSIAFALNTVNTNDLISTLEMYLKY---EDIDTIVIGL 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM--NVSRKKRI 133
P+ P + F+ + + + DER T+ A L++ ++K
Sbjct: 58 PIKYYNYLFPIEKKIKKFIKIIKYKYPNLIIKRLDERFTSKIANYYLLNSVFKKKKRKNK 117
Query: 134 QKVDSIAAALILQEVL 149
+D I+A L+LQ+ +
Sbjct: 118 SLLDKISATLLLQDYI 133
>gi|254456769|ref|ZP_05070197.1| conserved hypothetical protein TIGR00250 [Campylobacterales
bacterium GD 1]
gi|207085561|gb|EDZ62845.1| conserved hypothetical protein TIGR00250 [Campylobacterales
bacterium GD 1]
Length = 131
Score = 79.9 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+IDLG KRIGLA S + P P ++RK Q + E+ + + A +IG+P
Sbjct: 1 MKYIAIDLGLKRIGLAYS-AHKDLVTPLPAIMRKNRNQASAEVKKALKEWEVDAVVIGVP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L G R H M ++ DE +++ A+ ++ + R ++
Sbjct: 60 L---GGSSEDEMR-RRIAHFMNLVNFEGEILYQDEAGSSLEAENMMK--GEIKYIRDGRI 113
Query: 137 DSIAAALILQEVL 149
DSI+A +ILQ L
Sbjct: 114 DSISAMIILQRYL 126
>gi|309799357|ref|ZP_07693600.1| putative Holliday junction resolvase [Streptococcus infantis
SK1302]
gi|308117024|gb|EFO54457.1| putative Holliday junction resolvase [Streptococcus infantis
SK1302]
Length = 61
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 94 VHNMIDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDR 151
+ ++ +P + DERLTTV+A+++LI+ ++SR KR + +D +AA LILQ LDR
Sbjct: 1 MEPKLEELFGLPVEYQDERLTTVAAERMLIEQADISRNKRKKVIDKLAAQLILQNYLDR 59
>gi|146329693|ref|YP_001209982.1| hypothetical protein DNO_1098 [Dichelobacter nodosus VCS1703A]
gi|146233163|gb|ABQ14141.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 129
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 9/131 (6%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID+GT G+AI A P A + + + +IGLP
Sbjct: 5 VLGIDVGTYHTGVAIGQSVTGLAKPLQRFNLPLKQVHADTFSALVQQWKVNCIVIGLPSL 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G + P I + VP F DE LT+ +AQ + K I K DS
Sbjct: 65 ADGKKHPLSDEIHRLADECI-KLYGVPVHFIDETLTSHAAQ-------MRFPKTIDK-DS 115
Query: 139 IAAALILQEVL 149
AAA+I+++ L
Sbjct: 116 AAAAVIVEDFL 126
>gi|121608487|ref|YP_996294.1| Holliday junction resolvase-like protein [Verminephrobacter
eiseniae EF01-2]
gi|121553127|gb|ABM57276.1| Holliday junction resolvase YqgF [Verminephrobacter eiseniae
EF01-2]
Length = 161
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 12/136 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + D G KR+G+A + A P+ + ++ I A +IG+P
Sbjct: 37 RTFLAFDFGLKRVGVASGNRLLLRAAPQSTIAAV-GAARWAQVAQRIGQWQPDALVIGVP 95
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
L+ +G+ F + + +P DER +T A +
Sbjct: 96 LHPDGASHENTALALRFGR-QLRGRFGLPVFEVDERYSTTEAIAGGAKDADAAAA----- 149
Query: 137 DSIAAALILQEVLDRI 152
+IL++ L +
Sbjct: 150 -----CIILEQFLRSL 160
>gi|329946644|ref|ZP_08294056.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
str. F0386]
gi|328526455|gb|EGF53468.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 170
str. F0386]
Length = 129
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
L R + E + + I+GLP +M G R + ++ R
Sbjct: 1 MVTLRRDRYGADLDEAVDLVDEYGAFEVIVGLPKHMGGGSSSSTRDARRWARDLASRLPQ 60
Query: 104 VP-FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
DERLTTV+A + L + + VD AA +IL++ +
Sbjct: 61 RVCVRLVDERLTTVTAHRDLHAAGLKERSFRGIVDQAAAVVILEQAI 107
>gi|171060631|ref|YP_001792980.1| Holliday junction resolvase-like protein [Leptothrix cholodnii
SP-6]
gi|170778076|gb|ACB36215.1| Holliday junction resolvase YqgF [Leptothrix cholodnii SP-6]
Length = 149
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q S D G KR G+A + A P + + + I A ++G+P
Sbjct: 15 QTFLSFDYGRKRTGVASGNRVFGQATPLTTVTAE-GDARFERIARLIAEWQPDALVVGVP 73
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
+ +G+ + F + R +P DER +T
Sbjct: 74 RHPDGAPHENTRLAQRFARQLHGRFR-LPVFEVDERYSTTEV 114
>gi|91787040|ref|YP_547992.1| Holliday junction resolvase-like protein [Polaromonas sp. JS666]
gi|118597219|sp|Q12EE8|RUVX_POLSJ RecName: Full=Putative Holliday junction resolvase
gi|91696265|gb|ABE43094.1| Holliday junction resolvase YqgF [Polaromonas sp. JS666]
Length = 138
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
Q + D G +R G+A + R A P+ + + I A ++G+P
Sbjct: 14 QTFLAFDFGLQRTGVATGNVLTRTATPQATIAAT-GDARLKAIELRIREWQPDALVVGIP 72
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ +G+ + F + + + DER +T A +
Sbjct: 73 FHPDGASHENTRRAQKFSR-QLRARFGLKVFEVDERYSTTEALAGGAADADAASA----- 126
Query: 137 DSIAAALILQEVLDRIS 153
+IL++ L +
Sbjct: 127 -----CIILEQFLRSLP 138
>gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays]
gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays]
Length = 235
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLAI G F P L R + + L LL + IIGLP++
Sbjct: 75 LGVDLGDARTGLAIG-RGITFPRPLTVL-RLRGQKLELALLDVARQQEADELIIGLPVSA 132
Query: 80 NGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+GSE P+ + R+ V + + + DE T+ A +I V + R K D
Sbjct: 133 DGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDYMISRGVKKSARDTKSD 192
Query: 138 SIAAALILQEVL 149
+ AA +IL+
Sbjct: 193 AYAAVMILKRYF 204
>gi|257460557|ref|ZP_05625658.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
gi|257441888|gb|EEV17030.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
Length = 130
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +IDLG KRIG+A + P + P ++RK TQ A EL + + + ++G+P
Sbjct: 2 IVAIDLGLKRIGVAAA-PDDKTPLPCEPILRKNRTQAARELSELLREKGASVLVLGVPRG 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
E R F + F DE ++ A + K + DS
Sbjct: 61 GASEE-EMSRRIRHFASLL---DFDGEIKFQDESFSSAEAAEFASKCAKGGGK-DPRFDS 115
Query: 139 IAAALILQEVL 149
IAA +ILQ L
Sbjct: 116 IAATIILQRFL 126
>gi|88608671|ref|YP_505909.1| hypothetical protein NSE_0006 [Neorickettsia sennetsu str.
Miyayama]
gi|88600840|gb|ABD46308.1| conserved hypothetical protein [Neorickettsia sennetsu str.
Miyayama]
Length = 159
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M ++ + +++ + SID G + +G+A+SDP R+ A ++
Sbjct: 1 MITFDLQKFLGAIEA-GRVISIDPGRRIVGVAVSDPELRYIQNYFQFTSHGRGADAFHIM 59
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ 120
++ + I+G P + + G + F + P + DE +T
Sbjct: 60 KVVSD--FSGIIVGTPFSHIRNNG-WLDFIDKFAQ-KLSEVTRKPILMCDESSSTSDVMI 115
Query: 121 ILIDMNVSRKKRIQKVDSIAAALILQ 146
+L ++SR ++ + D IAA IL+
Sbjct: 116 LL--SSLSRSRQKEWKDKIAACCILE 139
>gi|320534358|ref|ZP_08034845.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133440|gb|EFW25901.1| conserved hypothetical protein TIGR00250 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 129
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 44 RPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
L R + E + + I+GLP +M G RA+ ++ R
Sbjct: 1 MATLRRDRYGADLDEAVDLVEEYGAFEVIVGLPKHMGGGSSSSTRDARAWARDLASRLPR 60
Query: 104 VP-FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
DERLTTV+A + L + + VD AA +IL++ +
Sbjct: 61 QVCVRLVDERLTTVTAHRDLHAAGMKERSFRGIVDQAAAVVILEQAI 107
>gi|32266728|ref|NP_860760.1| Holliday junction resolvase-like protein [Helicobacter hepaticus
ATCC 51449]
gi|62901012|sp|Q7VGU1|RUVX_HELHP RecName: Full=Putative Holliday junction resolvase
gi|32262779|gb|AAP77826.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 138
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
N I + D+G KRIGLA + P P ++R Q A EL + + NI ++G+
Sbjct: 2 NHCILACDVGLKRIGLA--TLKQEIILPLPPIIRINRNQAAKELDNVLKERNIHILVVGM 59
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI---LIDMNVSRKKR 132
P F+ + F +E T+ +A Q + N +R ++
Sbjct: 60 PSGGEAEHSDTQKRISHFISLL---SFEGEICFVNEDYTSFNALQSLSYMKRQNRARAQK 116
Query: 133 IQKVDSIAAALILQEVL 149
++DS++A ILQ +
Sbjct: 117 DGRIDSLSACEILQRYI 133
>gi|224417735|ref|ZP_03655741.1| Holliday junction resolvase-like protein [Helicobacter canadensis
MIT 98-5491]
gi|253827079|ref|ZP_04869964.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
gi|313141277|ref|ZP_07803470.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253510485|gb|EES89144.1| putative endonuclease [Helicobacter canadensis MIT 98-5491]
gi|313130308|gb|EFR47925.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 133
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
Q I ++D+G KRIG+A S P P ++RK Q A E+ I I I+G+
Sbjct: 1 MQSILALDIGLKRIGIAKS--IHNIPIPLPPILRKNRNQAAKEVSQVICDSKIQTLIVGI 58
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
P + + + FV +++ + F DE ++ A Q + + KK+
Sbjct: 59 P-KESETAAEMERRIKHFVA-LLEIPDNIKIHFVDESFSSFEALQRM-QGSKKSKKKDGT 115
Query: 136 VDSIAAALILQEVL 149
+DS+AA +IL+ L
Sbjct: 116 LDSLAAMIILERFL 129
>gi|124023439|ref|YP_001017746.1| endonuclease [Prochlorococcus marinus str. MIT 9303]
gi|123963725|gb|ABM78481.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9303]
Length = 214
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ I S+DLG +RIGLA DP P P L RK + L T+ + ++
Sbjct: 59 PRPKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRKVEGLVV 118
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + R + +P +E ++ +A + R
Sbjct: 119 GLPLDSKGLPTDQARHYERYGQ-RLARALKLPLALVNEHSSSWAAAERYNLQG----DRS 173
Query: 134 QKVDS 138
++DS
Sbjct: 174 GQLDS 178
>gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
Length = 186
Score = 78.0 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 3 ILLIEDLVKSLKPNQ--PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
IL L KSL+ + ID G +R G+A+ A + + K +LL
Sbjct: 8 ILPNARLKKSLETRKLRRSVGIDYGLERTGIAV--TFCGLAPRPLSVSKLKGDNLIKKLL 65
Query: 61 SFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSA 118
S E FI+GLP + + E + + TR F + V DE +T+ A
Sbjct: 66 SVAKKEKADEFIVGLPRSWDAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDA 125
Query: 119 QQILIDMNVSRKKRIQKVDSIAAAL 143
+ +I ++K R +VD+ AA L
Sbjct: 126 LEFMIYRGSTKKSRRLEVDAYAAVL 150
>gi|154149272|ref|YP_001405978.1| Holliday junction resolvase-like protein [Campylobacter hominis
ATCC BAA-381]
gi|153805281|gb|ABS52288.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 127
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
+D+G KRIG+A+ + P+ ++RK Q A E+ + + ++G+PL
Sbjct: 6 GLDVGLKRIGVAL--AFDKIVMPQNAVIRKNRNQAAREISEILQQNGVKKLVVGIPL--- 60
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
G R + +F DE ++V A ++ S KK+ K+DS+A
Sbjct: 61 GGSSEDEMKRRITHFCSLLNFKG-EIIFMDESYSSVEADEM---RQFSGKKKDGKLDSLA 116
Query: 141 AALILQEVL 149
A +IL+ L
Sbjct: 117 AMVILKRYL 125
>gi|154174481|ref|YP_001408003.1| Holliday junction resolvase-like protein [Campylobacter curvus
525.92]
gi|112803348|gb|EAU00692.1| conserved hypothetical protein [Campylobacter curvus 525.92]
Length = 127
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ID+G KR+G+A P+ ++RK Q A E+ + + ++G+P
Sbjct: 4 KFMAIDVGLKRVGVAFG--TGGIVVPQEPILRKNRNQAAREVSARVQEYGADTLVVGVP- 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
SE FV + ++ V+ DE ++ A +I D KR ++D
Sbjct: 61 KGGSSEDEMRRRIEHFVSLL---EISAKIVYQDEAFSSFEASEIYTD-----TKRDGRLD 112
Query: 138 SIAAALILQEVL 149
S+AA LIL+ L
Sbjct: 113 SVAAMLILKRYL 124
>gi|79317769|ref|NP_001031028.1| DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic
acid binding / recombinase [Arabidopsis thaliana]
gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana]
Length = 254
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R G+AIS P L + LL E FIIGLP +
Sbjct: 84 LGVDLGLSRTGIAIS--KGYTVKPLTVLKSRGQKLE-TRLLEIAEEEEADEFIIGLPRSS 140
Query: 80 NGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E + + R+ + + +DE TT A +I M +S+ +R + D
Sbjct: 141 DGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASDRMIVMGLSKSERQNRSD 200
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 201 AYAAVILLERYF 212
>gi|118475560|ref|YP_892282.1| Holliday junction resolvase-like protein [Campylobacter fetus
subsp. fetus 82-40]
gi|118414786|gb|ABK83206.1| putative Holliday junction resolvase [Campylobacter fetus subsp.
fetus 82-40]
Length = 124
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID+G KRIG+A++ P ++RK Q A + L + +N ++GLP
Sbjct: 2 IVAIDVGLKRIGVAVA-VLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLP-K 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
E + F+ + ++ DE ++ A ++ D + + DS
Sbjct: 60 GGSCEDEMERRIKHFISLV---GFDSEIIYVDEAYSSCEASELSKDS------KDGRFDS 110
Query: 139 IAAALILQEVLD 150
IAA +IL+ L+
Sbjct: 111 IAAMVILKRYLN 122
>gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102]
gi|62901007|sp|Q7U845|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase
gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 157
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + S+D+G KRIGLA DP P L R + L + +
Sbjct: 1 MPRPCSVLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLV 60
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
+GLPL+ G + + + + + +P + +E +T +A ++ + + S +
Sbjct: 61 VGLPLDAAGQPTAQADHCLRYGR-RLAQALQLPLAWVNEHSSTWAAGERHGLKGDRSGR 118
>gi|158604996|gb|ABW74808.1| conserved hypothetical protein [Campylobacter concisus 13826]
Length = 127
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ID+G KRIGLA P ++RK Q A ++ + ++G+P+
Sbjct: 4 KFMAIDVGLKRIGLAFG--FGEVVTPLEPVLRKNRNQAARDVSQKVNEYAPNTLVVGVPI 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
SE FV + + V+ DE ++ A +I D +R ++D
Sbjct: 62 -GGSSEDEMRRRIEHFVSLL---DMQANIVYQDEAFSSSEASEIYTD-----TRRDGRLD 112
Query: 138 SIAAALILQEVL 149
S++AA+IL+ L
Sbjct: 113 SVSAAIILKRYL 124
>gi|289524577|ref|ZP_06441431.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502182|gb|EFD23346.1| putative Holliday junction resolvase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 107
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 25 GTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEG 84
G+ RIG+AISDP FA FL + +L I N+ +IGLP+ NG +
Sbjct: 2 GSVRIGIAISDPLGIFAQGVGFLNAQGS--WLEDLALLIRKHNVKKVVIGLPIRTNGKKD 59
Query: 85 PRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+ + + + F+ WDER TT AQ L D +S KK+
Sbjct: 60 READAISDLTDKLKEIFPDITFILWDERFTTTIAQNYLRDSGMSGKKK 107
>gi|255321388|ref|ZP_05362548.1| conserved hypothetical protein [Campylobacter showae RM3277]
gi|255301541|gb|EET80798.1| conserved hypothetical protein [Campylobacter showae RM3277]
Length = 124
Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID+G KRIG+A+ + P+ ++RK Q A ++ + + ++G+PL
Sbjct: 3 IMAIDVGLKRIGVAL--AVGQTVMPQTPVLRKNRNQAARDVSTVLREYGAKKLVVGVPL- 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G R H + + V+ DE +++ A +I + +R ++DS
Sbjct: 60 --GGSSEDEMR-RRIAHFVSLLEFDGEVVYQDEAMSSFEASEIYAEG-----RRDGRLDS 111
Query: 139 IAAALILQEVL 149
IAA ++L+ L
Sbjct: 112 IAAMIVLKRYL 122
>gi|237752177|ref|ZP_04582657.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376419|gb|EEO26510.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 146
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ I +ID+G KRIG+A S R ++RK Q A + + + ++G+
Sbjct: 3 SKIIIAIDIGLKRIGVAKS--IRGIPLCLEPILRKNRNQAANAVRTLVLELQANVLVVGI 60
Query: 76 PLNMN-----GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK 130
P + S + FV +++ + + VF+DE ++ A + L D + +K
Sbjct: 61 PFVDDVSKANDSICAMQRRIKHFVG-LLELESKIEIVFFDESFSSKEALEKLDDKKMRKK 119
Query: 131 K--RIQKVDSIAAALILQEVL 149
+ +DS+AA +IL+ L
Sbjct: 120 AHSKDGSLDSLAALVILERYL 140
>gi|87303490|ref|ZP_01086273.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
gi|87281903|gb|EAQ73866.1| hypothetical protein WH5701_09525 [Synechococcus sp. WH 5701]
Length = 161
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P + + ++D+G +RIGLA DP P L R L + + A ++
Sbjct: 6 PPPRSVLALDVGRRRIGLAGCDPLGLTVTPLAPLARGAFPADLERLRPLVAQRRVQALVV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ + + R + + + + +P + DE ++ A + + R
Sbjct: 66 GLPLDASQQPTVQARHCRRYGQ-RLAQALELPLAWVDEHGSSWEAGER---RGLHG-DRS 120
Query: 134 QKVDS 138
++DS
Sbjct: 121 GQLDS 125
>gi|283956049|ref|ZP_06373536.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792369|gb|EFC31151.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 1336]
Length = 127
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 1 MRALALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A L + +K+ K+
Sbjct: 60 KGGSSEE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKL 112
Query: 137 DSIAAALILQEVL 149
DS+AA +++++
Sbjct: 113 DSLAAFIMIKDYF 125
>gi|325282547|ref|YP_004255088.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
gi|324314356|gb|ADY25471.1| Holliday junction resolvase [Deinococcus proteolyticus MRP]
Length = 159
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 14/132 (10%)
Query: 22 IDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNG 81
+D+ +RIG A+S R A R + R+++ + + ++GLPL +G
Sbjct: 36 LDVSKRRIGFAVSQ--GRLAFGRGSVERRRLPLDLKAVRLKVEDTGAEVLVLGLPLRTDG 93
Query: 82 SEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAA 141
+ P R+F + ++ + DER TT A R + +D AA
Sbjct: 94 AHSPAADRVRSFGRVLEEK--GYRVEYQDERFTTQRA----------RALGAEDLDEAAA 141
Query: 142 ALILQEVLDRIS 153
IL+ L R++
Sbjct: 142 VQILELWLTRMA 153
>gi|88808661|ref|ZP_01124171.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
gi|88787649|gb|EAR18806.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 7805]
Length = 151
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G +RIGLA D P P L R Q L + N+ ++GLPLN
Sbjct: 2 LSLDVGRRRIGLAGCDALGLTVSPLPALHRGSHAQNLHHLRTLCQHRNVKGLVVGLPLND 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130
G + H R + I R + +P F +E ++ +A++ + + S +
Sbjct: 62 QGQPTDQAHHCRRYGR-RIARDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112
>gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera]
Length = 213
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 25/132 (18%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+S P + FIIGLP++
Sbjct: 67 LGVDLGMSRTGLALS--KGFSVRPLS---------------------EVDEFIIGLPVSD 103
Query: 80 NGSEGPRVHSTRAFVHNMIDR--KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ + R + DE T+ A +IDM S+ R +D
Sbjct: 104 DGKETPQSNKVRSVAGRLAARAAERGWRVYLQDEHGTSEEALSFMIDMGHSKSARQNSID 163
Query: 138 SIAAALILQEVL 149
+ AA ++L+
Sbjct: 164 AYAAMMVLERYF 175
>gi|78184360|ref|YP_376795.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
gi|146325619|sp|Q3AYS6|RUVX_SYNS9 RecName: Full=Putative Holliday junction resolvase
gi|78168654|gb|ABB25751.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9902]
Length = 164
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ + S+D+G KRIGLA DP P P L R + L L T ++ +
Sbjct: 8 VPSACSVLSLDVGRKRIGLAGCDPLGITVSPLPALHRGRFDNDLLVLRHHCQTRSVQGLV 67
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+GLPL+ G + R + + + + +P + +E +T +A + R
Sbjct: 68 VGLPLDAAGQPTAQAEHCRRYG-VRLAQSLGLPLAWVNEHSSTWAAGERHGLQG----DR 122
Query: 133 IQKVDS 138
++DS
Sbjct: 123 TGRLDS 128
>gi|86153306|ref|ZP_01071510.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|85843032|gb|EAQ60243.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni HB93-13]
Length = 127
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 1 MRALALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A L + +K+ K+
Sbjct: 60 KGGSSEE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKL 112
Query: 137 DSIAAALILQEVL 149
DS++A +++++
Sbjct: 113 DSLSAFIMIKDYF 125
>gi|87124358|ref|ZP_01080207.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
gi|86167930|gb|EAQ69188.1| Holliday junction resolvase YqgF [Synechococcus sp. RS9917]
Length = 158
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G +RIGLA DP P L R++ + L + ++GLPL+
Sbjct: 1 MSLDVGRRRIGLAGCDPLGITVRPLAALQRRRFPEDLAHLRDLCLQRRVELLVVGLPLDR 60
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
NG + + + + + +P + +E ++ +A + L R K+DS
Sbjct: 61 NGQPTEQAMHCQRYG-LRLAEALQLPLAWINEHSSSWAAGEALGLHG----DRSGKLDS 114
>gi|159903511|ref|YP_001550855.1| endonuclease [Prochlorococcus marinus str. MIT 9211]
gi|226731638|sp|A9BAN9|RUVX_PROM4 RecName: Full=Putative Holliday junction resolvase
gi|159888687|gb|ABX08901.1| Predicted endonuclease involved in recombination [Prochlorococcus
marinus str. MIT 9211]
Length = 145
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
++ + S+D+G +RIG+A DP + R A +L ++ IIGL
Sbjct: 6 SKSVLSLDVGKRRIGIAGCDPLGITITQLEAIKRTTFNNEATQLRQLCDLRDVRGIIIGL 65
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+ G E + + I +++ +P + +E +T A Q N R K
Sbjct: 66 PLSDLGKETKQSSYCYTYG-INIAKELNLPLAWVNEHSSTWEAGQRFKLQN----DRSGK 120
Query: 136 VDSIAAALILQEVLDRISFLE 156
+DS AAAL+L++ L LE
Sbjct: 121 LDSAAAALLLEQWLTEGPELE 141
>gi|121612111|ref|YP_001000336.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|167005282|ref|ZP_02271040.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|167012709|sp|A1VYZ5|RUVX_CAMJJ RecName: Full=Putative Holliday junction resolvase
gi|87250480|gb|EAQ73438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 81-176]
Length = 127
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 1 MRALALDVGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A L + +K+ K+
Sbjct: 60 KGGSREE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKL 112
Query: 137 DSIAAALILQEVL 149
DS++A +++++
Sbjct: 113 DSLSAFIMIKDYF 125
>gi|57236948|ref|YP_178749.1| Holliday junction resolvase-like protein [Campylobacter jejuni
RM1221]
gi|86149908|ref|ZP_01068137.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|148926622|ref|ZP_01810303.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157414914|ref|YP_001482170.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|205355485|ref|ZP_03222256.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218562285|ref|YP_002344064.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|11135891|sp|Q9PHN2|RUVX_CAMJE RecName: Full=Putative Holliday junction resolvase
gi|62900905|sp|Q5HVD6|RUVX_CAMJR RecName: Full=Putative Holliday junction resolvase
gi|172047089|sp|A8FL56|RUVX_CAMJ8 RecName: Full=Putative Holliday junction resolvase
gi|57165752|gb|AAW34531.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
RM1221]
gi|85839726|gb|EAQ56986.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|112359991|emb|CAL34780.1| putative holliday junction resolvase [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845141|gb|EDK22236.1| hypothetical protein Cj8486_0644 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157385878|gb|ABV52193.1| putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni 81116]
gi|205346719|gb|EDZ33351.1| hypothetical protein Cj8421_0637 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|307747552|gb|ADN90822.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni M1]
gi|315058049|gb|ADT72378.1| Putative Holliday junction resolvase [Campylobacter jejuni subsp.
jejuni S3]
gi|315926753|gb|EFV06127.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315931833|gb|EFV10788.1| hypothetical protein CSU_0978 [Campylobacter jejuni subsp. jejuni
327]
Length = 127
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 1 MRALALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A L + +K+ K+
Sbjct: 60 KGGSSEE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKL 112
Query: 137 DSIAAALILQEVL 149
DS++A +++++
Sbjct: 113 DSLSAFIMIKDYF 125
>gi|86151561|ref|ZP_01069775.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315124150|ref|YP_004066154.1| hypothetical protein ICDCCJ07001_581 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841190|gb|EAQ58438.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315017872|gb|ADT65965.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 127
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 1 MRALALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A + I +K+ K+
Sbjct: 60 KGGSSEE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEALEYGIA---DTRKKDGKL 112
Query: 137 DSIAAALILQEVL 149
DS+AA +++++
Sbjct: 113 DSLAAFIMIKDYF 125
>gi|33862799|ref|NP_894359.1| hypothetical protein PMT0526 [Prochlorococcus marinus str. MIT
9313]
gi|62901010|sp|Q7V847|RUVX_PROMM RecName: Full=Putative Holliday junction resolvase
gi|33634715|emb|CAE20701.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 161
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + S+DLG +RIGLA DP P P L RK + L T+ + ++
Sbjct: 6 PSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKVEGLVV 65
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI 133
GLPL+ G + + + R + +P +E ++ +A + R
Sbjct: 66 GLPLDAKGLPTDQARHYERYGQ-RLARALKLPLALVNEHSSSWAAAERYNLQG----DRS 120
Query: 134 QKVDS 138
++DS
Sbjct: 121 GQLDS 125
>gi|297626344|ref|YP_003688107.1| Holliday junction resolvase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922109|emb|CBL56677.1| Holliday junction resolvase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 181
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G RIG+A D A+P + + T L + + I+G+P ++
Sbjct: 25 LCLDWGKARIGVAACDRDGLLAYPVETVA--NGSGTMKRLKALVDEYEPFEIIMGMPTDL 82
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
G +G + + R ++ DERLTT +A + L + R +D
Sbjct: 83 RGRQGIAASAMIDNARRV-TRALHRDVRLVDERLTTAAATRRLAAAGRDSRHRRSVIDQA 141
Query: 140 AAALILQEVLD 150
AA IL++ ++
Sbjct: 142 AAVAILEQAIE 152
>gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae]
Length = 74
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+E P + R F + + + + DERLTT+ A+ L + R K+DS
Sbjct: 1 MDGTEQPISNQARKFAN-RLHGRFGIKVTLHDERLTTIEARAQLFNQGGYRALNKSKIDS 59
Query: 139 IAAALILQEVLDR 151
I+A +IL+ ++
Sbjct: 60 ISAVIILESWFEQ 72
>gi|57167661|ref|ZP_00366801.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
RM2228]
gi|305433168|ref|ZP_07402324.1| Holliday junction resolvase family protein [Campylobacter coli
JV20]
gi|57020783|gb|EAL57447.1| conserved hypothetical protein TIGR00250 [Campylobacter coli
RM2228]
gi|304443869|gb|EFM36526.1| Holliday junction resolvase family protein [Campylobacter coli
JV20]
Length = 126
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ + A P ++RK Q A E+ + + +I+ I+G+P
Sbjct: 1 MRALALDVGLKRIGVALC--IDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIP 58
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A L + +K+ K+
Sbjct: 59 KGGSSEE-EMTRRIKHFVSLL---EFDKEIRFVDESGTSKEA---LGYGVANTRKKDAKL 111
Query: 137 DSIAAALILQEVL 149
DS+AA +++++
Sbjct: 112 DSLAALIMIKDYF 124
>gi|302871987|ref|YP_003840623.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
gi|302574846|gb|ADL42637.1| Holliday junction resolvase YqgF [Caldicellulosiruptor obsidiansis
OB47]
Length = 172
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I +D+G R+G+AISDP + A P + K EL T NI +IG P
Sbjct: 1 MRILCLDIGNSRVGVAISDPLKITAQPLMTIELKN-KDLFDELDKIFHTYNIEKVVIGYP 59
Query: 77 LNM-NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
L+ + + + I + V V WDER +T + ++++ + +K+R Q
Sbjct: 60 LSKLHPDLKDEKLKKIDEISSRIGSRYNVEIVKWDERFSTKAVERVMNEELNWKKRRRQ 118
>gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
Length = 127
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
D+G KRIGLA+ P P ++R Q +L F+ + ++GLP
Sbjct: 2 VGCDVGLKRIGLALYTQETIL--PMPAILRHNRDQARHDLKIFLENKRAVGLVVGLP--- 56
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVS---RKKRIQKV 136
TRA V + I+ + P + DE ++ AQ+ + + + ++ +
Sbjct: 57 ----NACYTDTRARVQHFIEGLDFAPIFYVDEDDSSAQAQERIFHLPYKQRQKARKNGIL 112
Query: 137 DSIAAALILQEVL 149
DS+AA ++L+ L
Sbjct: 113 DSLAACILLERYL 125
>gi|254432757|ref|ZP_05046460.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
gi|197627210|gb|EDY39769.1| conserved hypothetical protein TIGR00250 [Cyanobium sp. PCC 7001]
Length = 167
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + ++D+G +RIGLA DP P L R + L + + A ++
Sbjct: 4 PRPRSVLALDVGRRRIGLAGCDPLGLTVRRLPALARGRFPADLQRLQELLAERRVEALVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSR 129
GLPL+ G + R + + +P + +E +T +A++ + + S
Sbjct: 64 GLPLDQAGQPTEQARHCRRYGE-RLAVGTGLPLAWVNEHGSTWSAAERHGLHGDRSG 119
>gi|237750752|ref|ZP_04581232.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
bilis ATCC 43879]
gi|229373842|gb|EEO24233.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
bilis ATCC 43879]
Length = 160
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 29/160 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA----AFIIG 74
I ID G KR+G+A + P ++RK Q + +L + + ++G
Sbjct: 3 IFGIDFGLKRLGVA--KVVQNIIVPLAPIMRKNRNQASKDLANLLLAHESDMSKITLVVG 60
Query: 75 LPLNMN--------------------GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLT 114
+P +M+ G + H + ++ DE +
Sbjct: 61 MPRDMDIDDVDTESNLNIESGLDIESNRAGRHEVMQKRISHFLNLIDFSGQVIYIDESYS 120
Query: 115 TVSAQQILIDMNVSRKK---RIQKVDSIAAALILQEVLDR 151
+ A + L+D +++K + +DSI+A +IL+ L+R
Sbjct: 121 SKEANERLLDRGYNKRKNARKNGVLDSISACVILERYLER 160
>gi|297181477|gb|ADI17664.1| predicted endonuclease involved in recombination (possible holliday
junction resolvase in mycoplasmas and B. subtilis)
[uncultured gamma proteobacterium HF0130_23I23]
Length = 128
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D GTK+IG+ I++ + P P L K L I IIG P
Sbjct: 8 VLSLDFGTKKIGVCIAETYTGQSSPLPVL--KNDEHLFDNLDKIINEWLPNLCIIGKPKE 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M + R F +R + +E T+ + VS++ + Q+ DS
Sbjct: 66 MKENFEEAH---RNFFKTFKER-YEISISEVNEDFTSQA---------VSKEHKKQEYDS 112
Query: 139 IAAALILQEVLDRIS 153
+AALI +E ++ +
Sbjct: 113 YSAALIFEEWFNQNN 127
>gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 190
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G R G+A+ P L T+ ++ + E + ++GLPL+
Sbjct: 21 IGVDYGLVRTGVAV--TVGYDPKPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLPLHK 78
Query: 80 NGSEGPRVHSTRAFVHNMIDRK-----VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
NG+ + + T FV + + V +DER T+ +A N +
Sbjct: 79 NGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRNPHQPLY-G 137
Query: 135 KVDSIAAALILQEV 148
+D+ AA +IL+
Sbjct: 138 TLDADAACIILENY 151
>gi|153951394|ref|YP_001398406.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. doylei 269.97]
gi|167012708|sp|A7H4H6|RUVX_CAMJD RecName: Full=Putative Holliday junction resolvase
gi|152938840|gb|ABS43581.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. doylei 269.97]
Length = 129
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 1 MRALALDIGLKRIGVALC-VDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A + I + +K+ K+
Sbjct: 60 KGGSSEE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKKALEYGIA---NTRKKDGKL 112
Query: 137 DSIAAALILQEVL 149
DS+AA +++++
Sbjct: 113 DSLAAFIMIKDYF 125
>gi|88597054|ref|ZP_01100290.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|88190743|gb|EAQ94716.1| conserved hypothetical protein TIGR00250 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|284925895|gb|ADC28247.1| Holliday junction resolvase-like protein [Campylobacter jejuni
subsp. jejuni IA3902]
Length = 127
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 1 MRALALDVGLKRIGVALC-IDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIP 59
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
+ E + FV + + F DE T+ A L + +K+ K+
Sbjct: 60 KGGSSEE-EMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKL 112
Query: 137 DSIAAALILQEVL 149
DS++A +++++
Sbjct: 113 DSLSAFIMIKDYF 125
>gi|283954083|ref|ZP_06371608.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794362|gb|EFC33106.1| hypothetical protein C414_000080073 [Campylobacter jejuni subsp.
jejuni 414]
Length = 127
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIG+A+ ++ A P ++RK Q A E+ + + I+ I+G+P
Sbjct: 4 LALDVGLKRIGVALC-VDKKIALPLNAVLRKNRNQAASEIKNLLKIHEISLLIVGIPKGG 62
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+ E + FV + + F DE T+ A L + +++ K+DS+
Sbjct: 63 SSEE-EMTRRIKHFVSLL---EFDKEICFIDESGTSKEA---LKYGVANAREKDGKLDSL 115
Query: 140 AAALILQEVL 149
AA +++++
Sbjct: 116 AAFIMIKDYF 125
>gi|330872143|gb|EGH06292.1| Holliday junction resolvase-like protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 84
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKRI 133
+PLNM+G+ F ++ + V DERLTT A+ + + R
Sbjct: 1 MPLNMDGTPSDMSARAEKFSR-KLNGRFGVTVYTHDERLTTFEAKGERMARGGQKGSYRN 59
Query: 134 QKVDSIAAALILQEVLDRISFL 155
VD+IAAAL+LQ LD L
Sbjct: 60 NPVDAIAAALLLQGWLDEHPEL 81
>gi|325335422|gb|ADZ11696.1| Resolvase, holliday junction-type, YqgF-like protein [Riemerella
anatipestifer RA-GD]
Length = 119
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G R G+A +D + A + ++ E +I + A ++G
Sbjct: 1 MGQILAIDYGKARTGIAATDDMKLIASGLASVPTGELLSFLSE---YIHNNAVEAVVVGY 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
P+++ G+ S F+ + + DER T+ A +
Sbjct: 58 PVDLKGNVSEVETSILEFIEKFKVQFPEIEVHRLDERFTSKMASFFISQSG 108
>gi|218513131|ref|ZP_03509971.1| holliday junction resolvase protein [Rhizobium etli 8C-3]
Length = 78
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELL 60
M++L IE++ +L P Q IA +DLGTK IGL++SD GRRFA PRP + R K T A LL
Sbjct: 1 MTVLTIEEMAATLAPGQAIAGLDLGTKTIGLSMSDLGRRFATPRPVIRRAKFTIDAQALL 60
Query: 61 SFITTENIAAFIIGLPLN 78
F E +A F+IGLP+N
Sbjct: 61 DFAAKERVAGFVIGLPMN 78
>gi|317013781|gb|ADU81217.1| Holliday junction resolvase-like protein [Helicobacter pylori
Gambia94/24]
Length = 134
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E ++V A + L + KK + +
Sbjct: 58 -NESYADTHARIEHFIKLV---DFKGEIVFINEDNSSVEAYENLGYLGKKNKKLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|322378432|ref|ZP_08052885.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
gi|322380510|ref|ZP_08054698.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321147065|gb|EFX41777.1| Holliday junction resolvase [Helicobacter suis HS5]
gi|321149123|gb|EFX43570.1| Holliday junction resolvase-like protein [Helicobacter suis HS1]
Length = 131
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIGLAI ++ P + R Q +LELL + T+ I+GLP
Sbjct: 2 IIACDIGLKRIGLAI--YAQKIILPLNSIKRINRKQASLELLHLLETKKATKLIVGLPH- 58
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK--- 135
++TR V + I+ + P ++ +E ++V A L ++ ++++ K
Sbjct: 59 -------ACYTTRQRVLHFINLLNFAPVIYVEEDNSSVEALTNLWHLSSKKRQKASKDGA 111
Query: 136 VDSIAAALILQEVL 149
+DS+AA IL+ L
Sbjct: 112 LDSLAACEILRRYL 125
>gi|148239493|ref|YP_001224880.1| putative Holliday junction resolvase [Synechococcus sp. WH 7803]
gi|147848032|emb|CAK23583.1| Putative Holliday junction resolvase [Synechococcus sp. WH 7803]
Length = 159
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G +RIGLA DP P L R Q L + N+ ++GLPL+
Sbjct: 2 LSLDVGRRRIGLAGCDPLGLTVSSLPALHRGSHAQNLQHLRNLCHQRNVQGLVVGLPLDD 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV-SAQQILIDMNVSRK 130
G + H + I R + +P F +E ++ +A++ + + S +
Sbjct: 62 QGQRTDQAHHCHRYGQ-RIARDLGLPLAFVNEHSSSWAAAERHGLQGDRSGR 112
>gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205]
Length = 167
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
+ + S+D+G KRIGLA DP P P L R + +L + + I A ++
Sbjct: 4 PAPRSVLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILALVV 63
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
GLPL+ + R + + R + +P F +E ++ A
Sbjct: 64 GLPLDAQQQPTAQAEHCRRYGE-RLARDLDLPLAFVNEYASSWDA 107
>gi|148270377|ref|YP_001244837.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
gi|147735921|gb|ABQ47261.1| Holliday junction resolvase YqgF [Thermotoga petrophila RKU-1]
Length = 206
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+A + + K + + +L I GLPL+
Sbjct: 2 IVAVDYGERKCGVAFGE---ILPQKSLVIPTKNLKEFIRKLK-------PDKIIFGLPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T A DERLTT ++I +K D+
Sbjct: 52 MSGKYTQQTFKTIAVAFKFSKE---YETYLCDERLTTKIGERI-----------SKKDDA 97
Query: 139 IAAALILQEVLDRISFLE 156
++AALI Q + S E
Sbjct: 98 VSAALIFQSFFENSSVCE 115
>gi|291277337|ref|YP_003517109.1| Holliday junction resolvase [Helicobacter mustelae 12198]
gi|290964531|emb|CBG40384.1| Putative Holliday junction resolvase [Helicobacter mustelae 12198]
Length = 131
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ D+G KRIG+A P ++R Q A +L + +N I+G+P +
Sbjct: 2 IACDIGLKRIGIAG--LIEGIILPMEPILRTNRNQAASDLSKLLKEKNAHTLIVGIPQSG 59
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK---V 136
N + FV + + ++ +E T++ A+Q L + R++ QK +
Sbjct: 60 NAEDTK--RRIMFFVSLL---ETSAKILYVNEDCTSLEARQDLSHLKKQRRQNAQKNGRI 114
Query: 137 DSIAAALILQEVL 149
DS+AA ILQ L
Sbjct: 115 DSLAACKILQRYL 127
>gi|37926502|pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal
Fragment)
Length = 98
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLP
Sbjct: 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLP 60
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
L + E + V + R V WDER TT
Sbjct: 61 LRTDLKESAQAGKVLPLVEAL--RARGVEVELWDERFTTK 98
>gi|15644293|ref|NP_229345.1| hypothetical protein TM1545 [Thermotoga maritima MSB8]
gi|32130074|sp|Q9X1N1|RUVX_THEMA RecName: Full=Putative Holliday junction resolvase
gi|4982112|gb|AAD36612.1|AE001800_22 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 218
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 24/141 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ++D G ++ G+A + + K + + +L I GL
Sbjct: 11 GKVIVAVDYGERKCGVAFGE---ILPQKSLVIPTKNLKEFIRKLK-------PDKIIFGL 60
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
PL+M+G + T V DERLTT ++I ++
Sbjct: 61 PLSMSGKYTQQTFKT---VAVAFKFSKEYETYLCDERLTTKIGERI-----------SKR 106
Query: 136 VDSIAAALILQEVLDRISFLE 156
D+++AALI Q + S E
Sbjct: 107 DDAVSAALIFQSFFENSSVCE 127
>gi|217033373|ref|ZP_03438804.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
gi|216944314|gb|EEC23739.1| hypothetical protein HP9810_9g126 [Helicobacter pylori 98-10]
Length = 134
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NKSYTDTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|318041634|ref|ZP_07973590.1| putative Holliday junction resolvase [Synechococcus sp. CB0101]
Length = 151
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
++D+G KRIGLA D P P L R + L S + I A ++GLPL+
Sbjct: 2 LALDVGRKRIGLAGCDALGLTVTPLPALRRGRYPADLEHLRSLVAQRRITALVVGLPLDA 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+ R + + R + +P +E ++ +A +
Sbjct: 62 QQQPTEQAEHCRRYGE-RLARHLALPLALVNEFASSWAAAER 102
>gi|317008982|gb|ADU79562.1| Holliday junction resolvase-like protein [Helicobacter pylori
India7]
Length = 134
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E ++V A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLV---DFKGEIVFINEDNSSVEAYENLEHLGNKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|261839186|gb|ACX98951.1| Holliday junction resolvase-like protein [Helicobacter pylori 52]
Length = 134
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFEGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|160901820|ref|YP_001567401.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
gi|160359464|gb|ABX31078.1| Holliday junction resolvase YqgF [Petrotoga mobilis SJ95]
Length = 230
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
N + ID GT G+AI P+ + +K LE L + + + G
Sbjct: 5 KNLKVYGIDYGTSNCGIAILKQDVNIPLPKETIKSEK----LLEFLVSLDLSHDDLIVFG 60
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
LP++M+G + + I K+ F DERLTT S + VS KK +
Sbjct: 61 LPISMSGRYSKQSFLSIDEA-IKIKEKIGCKIYFVDERLTTSSLYSEVRGQ-VSYKKVKR 118
Query: 135 KVDSIAAALILQEVL 149
D ++ LIL +
Sbjct: 119 TKDQNSSVLILSNFI 133
>gi|207108735|ref|ZP_03242897.1| Holliday junction resolvase-like protein [Helicobacter pylori
HPKX_438_CA4C1]
Length = 156
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 8 DLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
DL S+ + I D+G KRIG+A+ P ++R Q + +L + +N
Sbjct: 14 DLTSSIACKRLIIG-DVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKN 70
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNV 127
I ++G P N S F+ + VF +E +++ A + L +
Sbjct: 71 IQVLVVGKP---NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGK 124
Query: 128 SRKK---RIQKVDSIAAALILQEV 148
K+ + ++DS++A IL+
Sbjct: 125 KNKRLATKDGRLDSLSACRILERY 148
>gi|116070989|ref|ZP_01468258.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
gi|116066394|gb|EAU72151.1| Holliday junction resolvase YqgF [Synechococcus sp. BL107]
Length = 151
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
S+D+G KRIGLA D P P L R + L L ++ ++GLPL+
Sbjct: 2 LSLDVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDS 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G + + + + + + +P + +E +T +A + R ++DS
Sbjct: 62 AGQPTVQAVHCQRYG-LRLAQTLGLPLAWVNEHSSTWAAGERHGLQG----DRTGRLDS 115
>gi|307637029|gb|ADN79479.1| hypothetical protein hp908_0350 [Helicobacter pylori 908]
gi|325995622|gb|ADZ51027.1| Holliday junction resolvase like protein [Helicobacter pylori 2018]
gi|325997218|gb|ADZ49426.1| Putative holliday junction resolvase [Helicobacter pylori 2017]
Length = 134
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E ++V A L + K+ + +
Sbjct: 58 -NESYADTHARIEHFIKLV---DFKGEIVFINEDNSSVEAYDNLEHLGKKNKRLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|170288997|ref|YP_001739235.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
gi|281412683|ref|YP_003346762.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
gi|170176500|gb|ACB09552.1| Holliday junction resolvase YqgF [Thermotoga sp. RQ2]
gi|281373786|gb|ADA67348.1| Holliday junction resolvase YqgF [Thermotoga naphthophila RKU-10]
Length = 206
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+A + + K + + +L I GLPL+
Sbjct: 2 IVAVDYGERKCGVAFGE---ILPQKSLVIPTKNLKEFIRKLK-------PDKIIFGLPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T V DERLTT ++I ++ D+
Sbjct: 52 MSGKYTQQTFKT---VAVAFKFSKEYETYLCDERLTTKIGERI-----------SKRDDA 97
Query: 139 IAAALILQEVLDRISFLE 156
++AALI Q + S E
Sbjct: 98 VSAALIFQSFFENSSVCE 115
>gi|94984533|ref|YP_603897.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM
11300]
gi|94554814|gb|ABF44728.1| Holliday junction resolvase YqgF [Deinococcus geothermalis DSM
11300]
Length = 232
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+ RIG A+S + A R + RK++ + + ++GLPL
Sbjct: 105 ILALDVSKSRIGFAVS--AGQLAFGRGSVARKRLPLDLKAVRLKVEETGAELLLLGLPLR 162
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ P RAF + D+ + DER TT A + + D
Sbjct: 163 TDGAHSPSADRVRAFGKILADK--GYRVAYQDERFTTQRA----RALGTRDE------DE 210
Query: 139 IAAALILQEVL 149
AA IL+ L
Sbjct: 211 AAAVQILELYL 221
>gi|212696192|ref|ZP_03304320.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
7454]
gi|212676821|gb|EEB36428.1| hypothetical protein ANHYDRO_00728 [Anaerococcus hydrogenalis DSM
7454]
Length = 76
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
MN + GP+ +FV ++ ++ + + DER+TT+ + ++L+DM+V R+ R + +D
Sbjct: 1 MNNTLGPQAMKVISFVD-LLKKETDIDIKYQDERMTTIQSDKVLMDMSVKRENRKKYIDK 59
Query: 139 IAAALILQEVLDRISF 154
IAA+ ILQ LD S
Sbjct: 60 IAASFILQTYLDGRSN 75
>gi|317180766|dbj|BAJ58552.1| Holliday junction resolvase-like protein [Helicobacter pylori F32]
Length = 134
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF DE +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFIDEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|213863107|ref|ZP_03386362.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 55
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 99 DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
+ V DERL+TV A+ L + R KVDS +A +IL+ ++
Sbjct: 1 HGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQ 53
>gi|188527140|ref|YP_001909827.1| Holliday junction resolvase-like protein [Helicobacter pylori
Shi470]
gi|226725528|sp|B2USG5|RUVX_HELPS RecName: Full=Putative Holliday junction resolvase
gi|188143380|gb|ACD47797.1| Holliday junction resolvase-like protein [Helicobacter pylori
Shi470]
Length = 134
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACGILERY 126
>gi|34558179|ref|NP_907994.1| Holliday junction resolvase-like protein [Wolinella succinogenes
DSM 1740]
gi|34483898|emb|CAE10894.1| conserved hypothetical protein-Predicted endonuclease [Wolinella
succinogenes]
Length = 127
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D+G KR+G+A A P ++RK Q A +L + + + G+P
Sbjct: 2 IIAVDIGLKRLGVA--QYAAGVALPLDPILRKNRHQAARDLDLLLKEKGAQKLVAGIPKE 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ SE R F+ + R F DE ++ A ++L + R+ +DS
Sbjct: 60 GSSSE-EMERRIRHFIGLLEFRG---EVCFVDESYSSKEAFELLRGRSRDRRDGK--LDS 113
Query: 139 IAAALILQEVLDRI 152
++A +IL+ L +
Sbjct: 114 LSALVILERYLGSL 127
>gi|15807494|ref|NP_296229.1| hypothetical protein DR_2509 [Deinococcus radiodurans R1]
gi|11136112|sp|Q9RRI2|RUVX_DEIRA RecName: Full=Putative Holliday junction resolvase
gi|6460331|gb|AAF12050.1|AE002080_4 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 136
Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ ++D+ RIG A+S R A R + RK++ + + ++GLPL
Sbjct: 17 TVLALDVSKSRIGFAVS--AGRLAFGRGSVDRKRLPLDLKAVRLKVEETGAERLVLGLPL 74
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+G P RAF ++D+ + DER TT A+ +
Sbjct: 75 RTDGKPSPTADRVRAFGRVLMDK--GYTVEYQDERFTTQRARAL 116
>gi|255660339|ref|ZP_05405748.1| hypothetical protein MgenG_02399 [Mycoplasma genitalium G37]
Length = 128
Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 49/123 (39%)
Query: 27 KRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPR 86
K+IG AI++ ++ K +TA+ L + +
Sbjct: 2 KKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIVIGFPKFHYYSD 61
Query: 87 VHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQ 146
+ +++++ +P + DE TT + + LI M++ K + D++AA LIL+
Sbjct: 62 IQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKAKDTLAAVLILE 121
Query: 147 EVL 149
Sbjct: 122 RFF 124
>gi|254779032|ref|YP_003057137.1| Holliday junction resolvase-like protein [Helicobacter pylori B38]
gi|254000943|emb|CAX28881.1| Putative holliday junction resolvase [Helicobacter pylori B38]
Length = 134
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAV--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLV---DFKGEIVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|71894392|ref|YP_278500.1| hypothetical protein MS53_0377 [Mycoplasma synoviae 53]
Length = 125
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 29 IGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF-ITTENIAAFIIGLPLNMNGSEGPRV 87
+G AISD F+ + ++ + + I FIIG PLN G +
Sbjct: 1 MGFAISDESNSFSLALENFDYDGSYEKIIQKIQLFLDEYKIDKFIIGYPLNSRGEKTKTC 60
Query: 88 HSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQE 147
F+ +++ +E ++ A +IL N+ KK+ K D +AA +ILQ+
Sbjct: 61 LLIDEFI-IHLEKNFDQKIKLINESYSSRKASEILHQANIKNKKQKDKKDMLAAKIILQD 119
Query: 148 VLD 150
LD
Sbjct: 120 YLD 122
>gi|15611385|ref|NP_223036.1| Holliday junction resolvase-like protein [Helicobacter pylori J99]
gi|32130075|sp|Q9ZMA5|RUVX_HELPJ RecName: Full=Putative Holliday junction resolvase
gi|4154855|gb|AAD05908.1| putative [Helicobacter pylori J99]
Length = 134
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + ++I ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E ++V A + L + K+ + +
Sbjct: 58 -NESYADTHARIEHFIKLV---DFKGEIVFINEDNSSVEAYENLEHLGKKNKRIATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|224032587|gb|ACN35369.1| unknown [Zea mays]
Length = 146
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 46 FLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI-DRKVYV 104
+ + A + + ++ +IA F++G P + G + +
Sbjct: 26 CRTKTNINLMADDFKTLVSMYSIAGFVVGYPFKIYGQPCASAIQVSLAGELCKTGKLDDL 85
Query: 105 PFVFWDERLTTVSAQQILIDMNVSR-KKRIQKVDSIAAALILQEVLDRIS 153
P+ +WDE T+ + +L +N+ D AA ILQ LD ++
Sbjct: 86 PYAYWDENFTSKCVEALLHPLNLKDLDDAKTMTDKFAAVCILQGYLDNMN 135
>gi|78213389|ref|YP_382168.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605]
gi|146325620|sp|Q3AIG9|RUVX_SYNSC RecName: Full=Putative Holliday junction resolvase
gi|78197848|gb|ABB35613.1| Holliday junction resolvase YqgF [Synechococcus sp. CC9605]
Length = 158
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
I S+D+G +RIGLA D P L R + + L + ++ ++
Sbjct: 3 PRPCSILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLQAHCCERSVQGLVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVSRK 130
GLPL+ G + + + + + +E +T +A +Q + + S +
Sbjct: 63 GLPLDAAGQPTAQAEHCQRYGLRLAAALDLP-LAWVNEHSSTWAAGEQFGLKGDRSGR 119
>gi|320335781|ref|YP_004172492.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211]
gi|319757070|gb|ADV68827.1| Holliday junction resolvase [Deinococcus maricopensis DSM 21211]
Length = 131
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+ RIG A+ A R R ++ + E ++GLPL
Sbjct: 6 VLALDVSKTRIGYAV--NVGDLAFGRGSRDRTTLSADLKAVAKKAHHEGATLLLLGLPLR 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+G+ R+F + R + DER TT A + L + +D
Sbjct: 64 TDGAPSAVADRVRSFGSAL--RAAGHTVQYQDERFTTQRA-RDLGAAD---------LDE 111
Query: 139 IAAALILQEVL 149
AA IL+ L
Sbjct: 112 AAAVQILELYL 122
>gi|210134529|ref|YP_002300968.1| Holliday junction resolvase-like protein [Helicobacter pylori P12]
gi|226725526|sp|B6JKR0|RUVX_HELP2 RecName: Full=Putative Holliday junction resolvase
gi|210132497|gb|ACJ07488.1| holliday junction resolvase [Helicobacter pylori P12]
Length = 134
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A L + K+ + +
Sbjct: 58 -NESYADTNVRIEHFIKLV---DFTGEIVFINEDNSSIEAYDNLEHLGRKNKRLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|222100102|ref|YP_002534670.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
4359]
gi|221572492|gb|ACM23304.1| Putative Holliday junction resolvase [Thermotoga neapolitana DSM
4359]
Length = 207
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G ++ G+A L + V EL F+ N + G+PL+
Sbjct: 2 IVAIDYGERKCGVAFG----------KILPQDSVVVPTRELKKFVERLNPDKIVFGMPLS 51
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + T V + DERLTT A K ++ D+
Sbjct: 52 MSGRYSQQTFKT---VEVALSFSKKYETYLCDERLTTRIA-----------SKVSKRDDA 97
Query: 139 IAAALILQEV 148
++AALI Q
Sbjct: 98 VSAALIFQSF 107
>gi|150020203|ref|YP_001305557.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429]
gi|149792724|gb|ABR30172.1| Holliday junction resolvase YqgF [Thermosipho melanesiensis BI429]
Length = 202
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G K+ G AI + + K + + ++GLPL+
Sbjct: 2 ILALDYGEKKTGYAIGNEFIAKSGTIKTSELKNLLFQFKK------------IVLGLPLS 49
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD- 137
M+G+ + + F +K+ + DERLTT A+ + + + R +D
Sbjct: 50 MSGNYSTQSYKVLKFA--FKLKKMGLNVFLIDERLTTKMAEVFQANDDDAFSARQIFIDY 107
Query: 138 ----SIAAALILQEVLD 150
SIA L++ L+
Sbjct: 108 IENPSIAQEFYLEDYLE 124
>gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
Length = 214
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+DLG R GLA+ G P L + LL + IIGLP++
Sbjct: 75 LGVDLGDARTGLAVG-RGITLPRPLTVLKLRGQKLELT-LLDVARQQEADELIIGLPVSA 132
Query: 80 NGSEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
+G E P+ + R+ V + + + DE T+ A + +I V + R + D
Sbjct: 133 DGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALEYMISRGVKKSARDTQSD 192
Query: 138 SIAAAL 143
+ AA +
Sbjct: 193 AYAAVV 198
>gi|317177150|dbj|BAJ54939.1| Holliday junction resolvase-like protein [Helicobacter pylori F16]
Length = 134
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIA--TLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|317179270|dbj|BAJ57058.1| Holliday junction resolvase-like protein [Helicobacter pylori F30]
Length = 134
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|317012175|gb|ADU82783.1| Holliday junction resolvase-like protein [Helicobacter pylori
Lithuania75]
Length = 134
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLV---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|317181677|dbj|BAJ59461.1| Holliday junction resolvase-like protein [Helicobacter pylori F57]
Length = 134
Score = 66.8 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +N+ ++G P
Sbjct: 2 ILACDVGLKRIGIA--TLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADMNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|308812223|ref|XP_003083419.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
gi|116055299|emb|CAL57695.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
Length = 224
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 27/152 (17%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGLP 76
+D G +RIGLA+SD P + + +A E+ E ++G+P
Sbjct: 66 LGVDYGARRIGLAVSDS-GMAPRPLRTMEHRGSATTGASAREVAETAARECCDRIVVGVP 124
Query: 77 LNMNGSEGPRVHSTRAFVHNMI------------------DRKVYVPFVFWDERLTTVSA 118
R R V + V DE T+V A
Sbjct: 125 KQPGRGMKDRRGRGRGAVRMDLICARFAGEVADALARSEDANARAVTVYTLDESRTSVEA 184
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
+ + + VD+ +AA++L+ D
Sbjct: 185 AERMEASGST-----NSVDAASAAILLERYFD 211
>gi|217031561|ref|ZP_03437066.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128]
gi|298736721|ref|YP_003729251.1| putative Holliday junction resolvase [Helicobacter pylori B8]
gi|216946761|gb|EEC25357.1| hypothetical protein HPB128_21g119 [Helicobacter pylori B128]
gi|298355915|emb|CBI66787.1| putative holliday junction resolvase [Helicobacter pylori B8]
Length = 134
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|260436612|ref|ZP_05790582.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
gi|260414486|gb|EEX07782.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Length = 158
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
I S+D+G +RIGLA D P L R + + L + ++ ++
Sbjct: 3 PRPCSILSLDVGRRRIGLAGCDALGISVTPLAALRRGRFDADLVVLRAHCRERSVQGLVV 62
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA 118
G PL+ G + + + + + +E +T +A
Sbjct: 63 GFPLDDAGQPTAQAEHCQRYGLRLAAALDLPL-AWVNEHSSTWAA 106
>gi|208434282|ref|YP_002265948.1| Holliday junction resolvase-like protein [Helicobacter pylori G27]
gi|226725527|sp|B5ZAA2|RUVX_HELPG RecName: Full=Putative Holliday junction resolvase
gi|208432211|gb|ACI27082.1| Holliday junction resolvase-like protein [Helicobacter pylori G27]
Length = 134
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLV---DFKGEIVFINEDNSSIEAYENLEHLGRKNKRLATKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|315586327|gb|ADU40708.1| Holliday junction resolvase family protein [Helicobacter pylori
35A]
Length = 134
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLTIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|15644962|ref|NP_207132.1| Holliday junction resolvase-like protein [Helicobacter pylori
26695]
gi|32130008|sp|O25101|RUVX_HELPY RecName: Full=Putative Holliday junction resolvase
gi|2313435|gb|AAD07403.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 134
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPH- 58
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
S F+ + VF +E +++ A + L + K+ + +
Sbjct: 59 --ESYADTNARIEHFIKLV---DFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|308063196|gb|ADO05083.1| Holliday junction resolvase-like protein [Helicobacter pylori
Sat464]
Length = 134
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIA--TLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNAHIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACGILERY 126
>gi|332673180|gb|AEE69997.1| Holliday junction resolvase family protein [Helicobacter pylori 83]
Length = 134
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIA--TLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEYFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|108562763|ref|YP_627079.1| Holliday junction resolvase-like protein [Helicobacter pylori
HPAG1]
gi|124107441|sp|Q1CUG7|RUVX_HELPH RecName: Full=Putative Holliday junction resolvase
gi|107836536|gb|ABF84405.1| hypothetical protein HPAG1_0338 [Helicobacter pylori HPAG1]
Length = 134
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K + +
Sbjct: 58 -NESYADTNARIEHFIKLV---DFKGEIVFINEDNSSIEAYENLEHLGKKNKWLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|308061685|gb|ADO03573.1| Holliday junction resolvase-like protein [Helicobacter pylori
Cuz20]
Length = 134
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|261837774|gb|ACX97540.1| hypothetical protein KHP_0327 [Helicobacter pylori 51]
Length = 134
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIA--TLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNACIEYFIKLL---DFKGEIVFINEDRSSIEAYENLGHLGKKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|87304077|ref|ZP_01086656.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
gi|87281492|gb|EAQ73539.1| Holliday junction resolvase YqgF [Synechococcus sp. WH 5701]
Length = 148
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 23 DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGS 82
D+G KRIGLA D P P L R + L L ++ ++GLPL+ G
Sbjct: 2 DVGRKRIGLAGCDALGITVTPLPALHRGRFDNDLLVLRDHCQRRSVQGLVVGLPLDSAGQ 61
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ + + + + + +P + +E +T +A + R ++DS
Sbjct: 62 PTVQAVHCQRYG-LRLAQTLGLPLAWVNEHSSTWAAGERHGLQG----DRTGRLDS 112
>gi|213620668|ref|ZP_03373451.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 71
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ + D GTK IG+AI A P P + + T + + I+GLPL
Sbjct: 4 TLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63
Query: 78 NMNGSEGP 85
NM+G+E P
Sbjct: 64 NMDGTEQP 71
>gi|297180573|gb|ADI16785.1| predicted endonuclease involved in recombination (possible holliday
junction resolvase in mycoplasmas and B. subtilis)
[uncultured gamma proteobacterium HF0010_11B23]
Length = 128
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
+ + S+D GTK IG+ I++ P P + + EL + + +IG+P
Sbjct: 6 KVVLSLDYGTKNIGICIAETYTGQTKPLPVI--ENNDSFYTELDNLLKEWRPNIVLIGIP 63
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
M+ ++ +A+ I + + + +E TT + + K+
Sbjct: 64 PKMSSDFNDGLNEAKAY----IINEHKIKVIEVNEDFTT---------QGLDKCKKNHMK 110
Query: 137 DSIAAALILQEVLDRI 152
DS +A LI Q+ + I
Sbjct: 111 DSYSAELIFQDWFNDI 126
>gi|308182507|ref|YP_003926634.1| Holliday junction resolvase-like protein [Helicobacter pylori
PeCan4]
gi|308064692|gb|ADO06584.1| Holliday junction resolvase-like protein [Helicobacter pylori
PeCan4]
Length = 134
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A P ++R Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
N S F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -NESYADTNARIEHFIKLL---DFKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACGILERY 126
>gi|213617507|ref|ZP_03372333.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 47
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 108 FWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDR 151
DERL+TV A+ L + R KVDS +A +IL+ ++
Sbjct: 2 LHDERLSTVEARSGLFERGGYRALNKGKVDSASAVIILESYFEQ 45
>gi|157363236|ref|YP_001470003.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
gi|157313840|gb|ABV32939.1| Holliday junction resolvase YqgF [Thermotoga lettingae TMO]
Length = 214
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 22/130 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G R GLAI + + A + +KKV + F++GLPL+
Sbjct: 2 IVAVDYGDARCGLAIGE---KLARKIMTVEKKKVISEISRIPFI------NCFVVGLPLS 52
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G + F ++R+ DERLT+ S K + +D
Sbjct: 53 MSGRYSQQTFKAIEFAE-KLNRRFKKRVYLIDERLTS------------SIFKNRENIDG 99
Query: 139 IAAALILQEV 148
+ AA I ++
Sbjct: 100 LCAAEIFEKF 109
>gi|308184138|ref|YP_003928271.1| Holliday junction resolvase-like protein [Helicobacter pylori
SJM180]
gi|308060058|gb|ADO01954.1| Holliday junction resolvase-like protein [Helicobacter pylori
SJM180]
Length = 134
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R Q + +L + ++I ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGVVLPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
+ + F+ + VF +E +++ A + L + K+ + +
Sbjct: 58 -SENYADTNIRIEHFIKLV---DFKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGR 113
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 114 LDSLSACRILERY 126
>gi|109947527|ref|YP_664755.1| Holliday junction resolvase-like protein [Helicobacter acinonychis
str. Sheeba]
gi|109714748|emb|CAJ99756.1| putative Holliday junction resolvase [Helicobacter acinonychis str.
Sheeba]
Length = 134
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I + D+G KRIG+A+ P ++R+ Q + +L + +NI ++G P
Sbjct: 2 ILACDVGLKRIGIAM--LLNGIILPLEAILRQNRNQASRDLSDLLKEKNIQVLVVGKP-- 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQ 134
T + + I VF +E +++ A + L + K +
Sbjct: 58 -----SENYADTNIRIGHFIKLVDFKGEIVFINEDSSSIEAYENLEYLGRKNKWLAIKDG 112
Query: 135 KVDSIAAALILQEV 148
++DS++A IL+
Sbjct: 113 RLDSLSACRILERY 126
>gi|169835834|ref|ZP_02869022.1| DNA integration/recombination/invertion protein [candidate division
TM7 single-cell isolate TM7a]
Length = 75
Score = 63.8 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILID-MNVSRKKRIQKVDSIAAALILQEVLDRIS 153
+ F DER TT A+ L + + K+R + VD +AA++ILQ+ LD ++
Sbjct: 19 KKNIPNIQIFFVDERYTTTEAEHYLKNYSKKNGKERRKVVDMVAASIILQKYLDTLT 75
>gi|307297757|ref|ZP_07577563.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306917017|gb|EFN47399.1| LOW QUALITY PROTEIN: Holliday junction resolvase YqgF
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 132
Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
ID GT RIGLA+ P + + L ++ I +IGLP++M
Sbjct: 4 LGIDFGTSRIGLAL--QVENIEIPLFAIDHTGYKKNLLRIIEEKG---IEEIVIGLPISM 58
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI 139
+G +F + DE LTT +A+++ + K D
Sbjct: 59 SGRFSESTLKAVSFAEKV-KSIFPGRVFLVDETLTTETARRLSSEAGQDFSKAR---DVF 114
Query: 140 AAALILQEV 148
+A IL+
Sbjct: 115 SAIQILRNY 123
>gi|325846691|ref|ZP_08169606.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481449|gb|EGC84490.1| Holliday junction resolvase-like protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 67
Score = 63.4 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 98 IDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ ++ + + DER+TT+ + +IL+DM+V R+ R + +D IAA+ ILQ LD S
Sbjct: 10 LKKETDIDIKYQDERMTTIQSNKILMDMSVKRENRKKYIDKIAASFILQTYLDGRSN 66
>gi|254751374|ref|ZP_05203411.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Vollum]
Length = 75
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIG 74
I +D+GTK +G+AISD A + ++ + + ++ ++G
Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVG 60
Query: 75 LPLNMNGSEGPR 86
LP NMNG+ GPR
Sbjct: 61 LPKNMNGTIGPR 72
>gi|145354506|ref|XP_001421524.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581761|gb|ABO99817.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 202
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 25/160 (15%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKK---VTQTALELLSFITTENIAAFIIGLP 76
+D G +R+GLA+S+ G P L T T +L E ++G+P
Sbjct: 40 LGVDYGARRVGLAVSN-GGAAPRPLRTLTHSGTATTTSTVRAILDVALEECCDRIVVGIP 98
Query: 77 L-----------NMNGSEGPRVHSTRA-------FVHNMIDRKVYVPFVFWDERLTTVSA 118
+ G+ R + + +DE T+ A
Sbjct: 99 VPPGRAAKDRRGRGRGAVQMHAVCARFAGEVADACARSTNAETKALVVYTYDESRTSKEA 158
Query: 119 QQILIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLESS 158
+ + S + +DS +AA++L+ D S+ E+
Sbjct: 159 SERIATSGGSNEN--GALDSASAAILLERYFD-GSYGEAK 195
>gi|56807333|ref|ZP_00365334.1| COG0816: Predicted endonuclease involved in recombination
(possible Holliday junction resolvase in Mycoplasmas
and B. subtilis) [Streptococcus pyogenes M49 591]
Length = 83
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLV--RKKVTQTALELLSFITTENIAAFIIGLPL 77
+D+G+K +G+AISDP A + +K L + + F+IGLP
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 78 NMNGSEGPRVHSTRAFVHN 96
NMN + GPRV ++ + +
Sbjct: 61 NMNNTNGPRVDASITYGSH 79
>gi|145516242|ref|XP_001444015.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411415|emb|CAK76618.1| unnamed protein product [Paramecium tetraurelia]
Length = 139
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRF------AHPRPFLVRKKVTQTALELLSFI 63
+K + + IDLGT G ++S ++ P + + + I
Sbjct: 3 LKLQQSKFNLMGIDLGTAFTGFSVSYNLQQVLVYDLHYSPCYSPHDSTLYKRII---QII 59
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILI 123
E I +IG P G + N++ + E TT A++
Sbjct: 60 NKEKIGGILIGKPSFEKGYIEEFT---KGLESNLVAEGLKTFITQVGEDYTTKQAKK--- 113
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+S+ D +AA LILQ L+ +
Sbjct: 114 ---ISKTNNKFLHDGMAAMLILQSFLNEL 139
>gi|224012605|ref|XP_002294955.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
CCMP1335]
gi|220969394|gb|EED87735.1| Hypothetical protein THAPSDRAFT_264879 [Thalassiosira pseudonana
CCMP1335]
Length = 423
Score = 60.7 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 51 KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMID-----RKVYVP 105
T ++++ +E + ++GLPL+ NGS + TR F + ++
Sbjct: 230 NNTLLCNTIINYAISEQVTNLVLGLPLHKNGSISEQSLITRQFGYELLQTVRTRMGYNAN 289
Query: 106 FVFWDERLTTVSAQQILIDMNVSRKKR-------IQKVDSIAAALILQEV 148
WDER T+ A ++ ++R +R +D AA +IL+
Sbjct: 290 VTLWDERYTSKEAASRIVGEAIARNRRIPSASDLNGALDDEAACIILEHY 339
>gi|330872144|gb|EGH06293.1| Holliday junction resolvase-like protein [Pseudomonas syringae
pv. glycinea str. race 4]
Length = 66
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ID GTK+IG+A+ A L + ++ + I A ++GLPLN
Sbjct: 7 LLGIDYGTKQIGVAVGQAITGQARELCTLKAQNGVPDWDKVQALINEWKPDAIVVGLPLN 66
>gi|226355270|ref|YP_002785010.1| Holliday junction resolvase [Deinococcus deserti VCD115]
gi|226317260|gb|ACO45256.1| putative Holliday junction resolvase [Deinococcus deserti VCD115]
Length = 139
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D+ RIG A+ + A R + RK++ + + ++GLPL
Sbjct: 14 VLALDVSKSRIGFAV--NLGQLAFGRGSVDRKRLPLDLKAVRLKVEETGATLLLLGLPLR 71
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
+G+ P RAF + D+ + DER TT A+++
Sbjct: 72 TDGAPSPTADRVRAFGRVLTDK--GYRVAYQDERFTTRRAREL 112
>gi|154249032|ref|YP_001409857.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1]
gi|154152968|gb|ABS60200.1| Holliday junction resolvase YqgF [Fervidobacterium nodosum Rt17-B1]
Length = 226
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 27/136 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G + G AI + F + ++ I +G+PL+
Sbjct: 3 IIAIDYGKSKCGYAIGN---VFVSESGTIKTSEIHTKISSFKKII---------LGIPLS 50
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+ + F ++ + +F DERLTT A + + + D
Sbjct: 51 MSGNYSTQTFEVIKFGIKLLKQ--GKEVLFIDERLTTQMA----------KTYQKKDDDR 98
Query: 139 IAAALILQEVLDRISF 154
+A +L LD I+
Sbjct: 99 FSAEQLL---LDYINN 111
>gi|227498580|ref|ZP_03928724.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904036|gb|EEH89954.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 133
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 25/144 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I ID G + G A+ + + L + L F+ + ++G
Sbjct: 1 MKKILGIDPGKDKTGAALCEESGKILRCEVLL----MEHFLASLQKFLDHVPVTECVLG- 55
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
NG+ + T + + DE +T A+Q+ ++ +
Sbjct: 56 ----NGTTSASMQKTL------LAAYPDLAIHIIDEAHSTEEARQLYWKLHPPKGLMKLI 105
Query: 134 --------QKVDSIAAALILQEVL 149
+D +AA +++Q L
Sbjct: 106 PLGMRTPPGNMDGLAAVILVQRYL 129
>gi|282899412|ref|ZP_06307379.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis
raciborskii CS-505]
gi|281195676|gb|EFA70606.1| Resolvase, RNase H-like protein fold protein [Cylindrospermopsis
raciborskii CS-505]
Length = 158
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 24/156 (15%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
+ + +K I D G + G+A+ + H Q + F TT
Sbjct: 2 NNTINYIKTQSTILGFDPGRDKCGVAVMGIDLKLYHHEVVPA----KQVITRISDFRTTF 57
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+I+ ++G ++ +D + DER TT++A+ M
Sbjct: 58 SISRIVMGNQTTAK----TWQQQLEQELNPSLD------IILVDERYTTLAARDRYWQMF 107
Query: 127 VSR----------KKRIQKVDSIAAALILQEVLDRI 152
R ++ + +D I A L+++ L+ +
Sbjct: 108 PPRGLTSLVPKGLRQPPRVIDDIVAILLIERYLEEL 143
>gi|148238653|ref|YP_001224040.1| polynucleotidyl transferase [Synechococcus sp. WH 7803]
gi|147847192|emb|CAK22743.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily
[Synechococcus sp. WH 7803]
Length = 145
Score = 57.2 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 27/147 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
IA++D G + GL + D + V T + E +IG
Sbjct: 1 MTRIAALDPGRSKCGLVLVDLDLGRVLEGQVAPAESVLATLEQWRGVGPLER---MVIG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
NG+ H +P DER TT++A++ ++ + R
Sbjct: 57 ----NGTAS---------AHWRDQLPADLPLTVVDERGTTLAARRRYWELWPPQGWRRLL 103
Query: 136 ----------VDSIAAALILQEVLDRI 152
+D++AA +IL+ L+R
Sbjct: 104 PEGLRIPPCDLDAVAALVILESALNRR 130
>gi|126660442|ref|ZP_01731551.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110]
gi|126618255|gb|EAZ89015.1| hypothetical protein CY0110_23026 [Cyanothece sp. CCY0110]
Length = 139
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 24/151 (15%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ K + + D G + G+AI+D + + +Q L I +I
Sbjct: 2 NQKSSSILLGFDPGRDKCGVAIADKLGNIYYHEVI----ESSQAISTLNHLIEQFSIKFL 57
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNV 127
++G + S + + V VP F DER +T+ A+ + +
Sbjct: 58 VMGN----------QTTSKQWKKQLENELLVSVPIFFIDERNSTLEARDRYWEMYPPQGL 107
Query: 128 SRKKRIQK------VDSIAAALILQEVLDRI 152
R +D I A L+++ + I
Sbjct: 108 MRLVPKGMRNPPRPIDDIVAILLIERYFNSI 138
>gi|289772787|ref|ZP_06532165.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289702986|gb|EFD70415.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 172
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
++D+G RIG+A DP A P + + V L + ++G
Sbjct: 15 RRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVVG 74
Query: 75 LPL 77
LP
Sbjct: 75 LPP 77
>gi|282897295|ref|ZP_06305297.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii
D9]
gi|281197947|gb|EFA72841.1| Resolvase, RNase H-like protein fold protein [Raphidiopsis brookii
D9]
Length = 150
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 24/155 (15%)
Query: 7 EDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
+++ +K I D G + G+A+ + RK + IT
Sbjct: 2 NNIINCIKTQSTILGFDPGRDKCGVAV-----------MGIDRKLYHHEVVPAKQVITRI 50
Query: 67 NIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN 126
+ + + G++ + + + + DER TT++A+ M
Sbjct: 51 SDFRTTFSISTIVMGNQTTAKTWKQQLEQ---ELNPSLDIILVDERYTTLAARDRYWQMF 107
Query: 127 VSR----------KKRIQKVDSIAAALILQEVLDR 151
R ++ + +D I A L+++ L+
Sbjct: 108 PPRGLTNLVPKGLRQPPRVIDDIVAILLIERYLEE 142
>gi|255626817|gb|ACU13753.1| unknown [Glycine max]
Length = 110
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 55 TALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV--YVPFVFWDER 112
A +L S I ++ F+IG+P + F+ N+ K+ V + +W+E
Sbjct: 1 MASDLESLIAKYSLKGFVIGIPF-DKHQVSSDAMQVKVFIDNLCRTKMLEGVKYAYWNES 59
Query: 113 LTTVSAQQILIDMNVSRKK-RIQKVDSIAAALILQEVLDRIS 153
T+ + + +L +N++ +D AA ILQ LD ++
Sbjct: 60 FTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVN 101
>gi|67925371|ref|ZP_00518722.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH
8501]
gi|67852786|gb|EAM48194.1| Ribonuclease RNase H fold containing [Crocosphaera watsonii WH
8501]
Length = 140
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I D G + G+AI+D + + + +Q L + + I ++ ++G
Sbjct: 7 SKILGFDPGRDKCGIAITDKKGNIYYHQVI----ESSQAILTINTLIKQFSVNLLVLGN- 61
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ------------ILID 124
+ S + + + +P DER +T+ A+ L+
Sbjct: 62 ---------QTTSKQWRKRLDNELLMSIPIELIDERNSTLEARDRYWKMYPPQGLMRLLP 112
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ R +D I A L+++ I+
Sbjct: 113 QGMRNPPR--PIDDIVAILLIERYFKSINN 140
>gi|113954115|ref|YP_729548.1| hypothetical protein sync_0314 [Synechococcus sp. CC9311]
gi|113881466|gb|ABI46424.1| conserved hypothetical protein [Synechococcus sp. CC9311]
Length = 150
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 22/146 (15%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D G + GL +++ + +V + E
Sbjct: 1 MTRVVALDPGRSKCGLLLANISTNTVLKAMVIPSAEVLDQLRAWMEDDQGE--------N 52
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
+ G ST + DE TT+ A++ + +R +
Sbjct: 53 AQIADLVIGDGTSSTI----WQQQLPTSLKVHVVDETGTTLRARERYWQLWPARGWKRLL 108
Query: 134 --------QKVDSIAAALILQEVLDR 151
+D+IAA +IL++ LDR
Sbjct: 109 PLGLRIPSGDLDAIAALVILEDYLDR 134
>gi|217076673|ref|YP_002334389.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
gi|217036526|gb|ACJ75048.1| putative Holliday junction resolvase [Thermosipho africanus TCF52B]
Length = 202
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 24/126 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G + G AI + F + K + + ++G+PL+
Sbjct: 2 IIAIDYGNSKCGYAIGN---NFISKSGAVKTKDIMKLISNAKKI---------VMGIPLS 49
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
M+G+ + F +N++++ DERLTT A I + D+
Sbjct: 50 MSGNYSTQSLKVLTFANNLVEKGYD--VFLIDERLTTKMASSFGIKDD----------DA 97
Query: 139 IAAALI 144
+A I
Sbjct: 98 FSARQI 103
>gi|172035379|ref|YP_001801880.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142]
gi|171696833|gb|ACB49814.1| putative resolvase, RNase H-like fold [Cyanothece sp. ATCC 51142]
Length = 139
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 24/151 (15%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ K + + D G + G+AI+D + + + +Q L + I +I
Sbjct: 2 NQKSSSMVLGFDPGRDKCGVAIADNKGKIYYHEVV----ESSQGISTLNNLIEQFSINFL 57
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNV 127
++G + S + + V VP V DER +T+ A+ + +
Sbjct: 58 VMGN----------QTTSKQWKKQLESELLVSVPIVLIDERNSTLEARDRYWEMYPPQGL 107
Query: 128 SRKKRIQK------VDSIAAALILQEVLDRI 152
R +D I A L+++ + I
Sbjct: 108 MRLLPKGMRNPPRPIDDIVAILLIERYFNSI 138
>gi|88808007|ref|ZP_01123518.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805]
gi|88788046|gb|EAR19202.1| hypothetical protein WH7805_07591 [Synechococcus sp. WH 7805]
Length = 145
Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
IA++D G + GL + D L V +T + + E + ++G
Sbjct: 1 MTRIAALDPGRSKCGLLLVDTDLGIVLEGHVLEGCSVLETLEQWR---SKEPLDRVVMG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
NG+ + DER TT+ A+ ++ + R
Sbjct: 57 ----NGTASRHWRD---------QLPADLQLTVVDERGTTLQARSRYWELWPPKGWRRLL 103
Query: 136 ----------VDSIAAALILQEVLD 150
+D++AA +IL+ L+
Sbjct: 104 PEGLRIPPCDLDAVAALVILETALN 128
>gi|166363434|ref|YP_001655707.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843]
gi|166085807|dbj|BAG00515.1| hypothetical protein MAE_06930 [Microcystis aeruginosa NIES-843]
Length = 130
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 30/145 (20%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I D G + G+A+ + +Q L S + ++G
Sbjct: 1 MCILGFDPGKDKCGIAVRSSTGKIYTHEVIA----SSQAIERLASLCQQYPLELLVMGNQ 56
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILID 124
I ++ +P DER +T+ A+ Q LI
Sbjct: 57 TTSKS------------WRQKIAARITIPITLVDERNSTLEARDRYWQMFPPKGLQKLIP 104
Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149
+ R +D I A L+++ L
Sbjct: 105 QGMRLPDR--PIDDIVAILLIERHL 127
>gi|169835835|ref|ZP_02869023.1| DNA integration/recombination/invertion protein [candidate
division TM7 single-cell isolate TM7a]
Length = 71
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D+G RIG+A DP A + R K+ + + E ++G+
Sbjct: 1 MRKFIGLDVGDVRIGVAKCDPLGILATALEVIDRTKIDP-IARIKEILDDEGTKKIVVGM 59
Query: 76 PLNMNG 81
P +++G
Sbjct: 60 PKSLDG 65
>gi|159027740|emb|CAO89610.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 130
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 30/145 (20%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
I D G + G+A+ + +Q L S I ++G
Sbjct: 1 MCILGFDPGKDKCGIAVRSSTGKIYTHEVIA----SSQAIEHLASLCQQYPIELLVMGNQ 56
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILID 124
I +V +P DER +T+ A+ Q LI
Sbjct: 57 TTSKS------------WREKIAARVTIPITLVDERNSTLEARDRYWQMFPPKGLQKLIP 104
Query: 125 MNVSRKKRIQKVDSIAAALILQEVL 149
+ R +D I A L+++ L
Sbjct: 105 QGMRLPDR--PIDDIVAILLIERHL 127
>gi|332712311|ref|ZP_08432239.1| putative endonuclease involved in recombination [Lyngbya majuscula
3L]
gi|332349117|gb|EGJ28729.1| putative endonuclease involved in recombination [Lyngbya majuscula
3L]
Length = 133
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 28/143 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ + + + I ++G
Sbjct: 2 ILGFDPGRDKCGVAVMEKDGQLLTHEVVA----SGNAIAKFQQLCQQFPIETIVMG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA------------QQILIDMN 126
+ + R + VP V DER +++ A Q LI
Sbjct: 54 ------DQTTAKRWKQKIKEELPASVPIVLVDERYSSLEARPRYWQMYPPKGFQRLIPQG 107
Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
+ + R +D I A L+++ +
Sbjct: 108 MRQPPR--PIDDIVAILLIERYI 128
>gi|289758683|ref|ZP_06518061.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714247|gb|EFD78259.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length = 107
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 25/65 (38%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
ID+G RIG+A SDP A P + R + + L + I+
Sbjct: 19 PGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIV 78
Query: 74 GLPLN 78
GLP
Sbjct: 79 GLPRT 83
>gi|254424331|ref|ZP_05038049.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335]
gi|196191820|gb|EDX86784.1| hypothetical protein S7335_4490 [Synechococcus sp. PCC 7335]
Length = 148
Score = 54.1 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+ D G + G+A+ + + + + T I++ ++G
Sbjct: 15 TLLGFDPGRDKCGVAV----VGLDKALHYHQVISSPNVSATIQNLRETYPISSIVMG--- 67
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
++ + + + V DER +++ A+ +M +
Sbjct: 68 --------DQTRSKQWKKQLGNLPNAPRIVLIDERYSSLEARDRYWEMYPPKGITKLLPR 119
Query: 134 ------QKVDSIAAALILQEVLDRIS 153
+ +D I A L+++ L+R+S
Sbjct: 120 SLRSIPRPIDDIVAILLVERYLNRLS 145
>gi|33239731|ref|NP_874673.1| hypothetical protein Pro0279 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237256|gb|AAP99325.1| Predicted endonuclease [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 145
Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 25/144 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + SID G K+ G+ ++D F ++ V + + I IIG
Sbjct: 1 MRKVISIDPGHKKCGILLADVEGLFVIDGKTVINSSVIKLIEDWRE---KYIIDLIIIGN 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
+G F+ N I P DER+TT+ A+ +++ +
Sbjct: 58 GTTSRYWQGK-------FIDNEIG-----PIELVDERMTTLLARSRYLELCPPKFIFRWI 105
Query: 134 --------QKVDSIAAALILQEVL 149
+D++ A ++++
Sbjct: 106 PKTLIPPPANLDAVVALILIENYF 129
>gi|119484735|ref|ZP_01619217.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106]
gi|119457553|gb|EAW38677.1| hypothetical protein L8106_14720 [Lyngbya sp. PCC 8106]
Length = 136
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 28/143 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ + + + + T+ L S I ++G
Sbjct: 5 ILGFDPGKDKCGIAVMENNNQLQYHQVIP----STEAIKTLQSLCQQFPIHLCVMGNQTT 60
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ------------ILIDMN 126
+ + + + DER +++ A+ LI
Sbjct: 61 SKSWKQKLSEA----------LPNTLQIILVDERYSSLEARDRYWQMYPPQGLTRLIPQG 110
Query: 127 VSRKKRIQKVDSIAAALILQEVL 149
+ R +D + A ++++ L
Sbjct: 111 MRTPPR--PIDDLVAIILIERYL 131
>gi|163785754|ref|ZP_02180259.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
gi|159878979|gb|EDP72978.1| hypothetical protein HG1285_07148 [Hydrogenivirga sp. 128-5-R1-1]
Length = 79
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 50 KKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
K E+ I ++GLP+ + G EG + TR FV + + + VF
Sbjct: 2 KNSPSVFEEIKKVINEYKPKKIVVGLPITLKGEEGEQARKTRKFVEKLKEHIPDIQIVFE 61
Query: 110 DERLTTVSAQQ 120
DER T+ A++
Sbjct: 62 DERFTSQMAEK 72
>gi|218437377|ref|YP_002375706.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7424]
gi|218170105|gb|ACK68838.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7424]
Length = 132
Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 28/147 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ R+ + + + + + + I ++G
Sbjct: 2 ILGFDPGRDKCGVAVMGNDRQIYDHQVV----ESDRAIAVVNALLKEYPIEILVMGNQTT 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI------------LIDMN 126
+ I+ +P V DER +++ A+ LI
Sbjct: 58 AKSWK----------AKLEIELSQSIPIVLVDERNSSMEARDRYWEMYPPKGIKWLIPQG 107
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRIS 153
+ R +D I A L+++ L ++S
Sbjct: 108 MRLPPR--PIDDIVAILLIERYLGQLS 132
>gi|218246877|ref|YP_002372248.1| Resolvase RNase H domain-containing protein fold protein
[Cyanothece sp. PCC 8801]
gi|257059919|ref|YP_003137807.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802]
gi|218167355|gb|ACK66092.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
8801]
gi|256590085|gb|ACV00972.1| resolvase RNase H domain protein [Cyanothece sp. PCC 8802]
Length = 140
Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 24/150 (16%)
Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
++KP + I D G + GLA+ D + + L S I
Sbjct: 2 NIKPPEIILGFDPGRDKCGLAVRDQKDQILYHEVV----SSEAAIATLKSVSQQYPIDLL 57
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNV 127
++G + S + + P V DER +++ A+ +
Sbjct: 58 VMGN----------QTTSKQWKKQLESELSPTFPIVMVDERNSSLEARDRYWQMYPPQGL 107
Query: 128 SRKKRIQK------VDSIAAALILQEVLDR 151
+R +D I A L+++ L+
Sbjct: 108 TRLIPQGMRLPPCPIDDIVAILLIERYLNN 137
>gi|186685566|ref|YP_001868762.1| resolvase domain-containing protein [Nostoc punctiforme PCC 73102]
gi|186468018|gb|ACC83819.1| Resolvase, RNase H domain protein fold protein [Nostoc punctiforme
PCC 73102]
Length = 151
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 28/148 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + GLA+ R+ + + L + + + I+ ++G
Sbjct: 13 ILGFDPGRDKCGLAVMGLDRQLYYHQVVLA----KEAIATIETLRQKFPISLMVMG---- 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI------------LIDMN 126
+ + + + + + DER TT+ A+ L+
Sbjct: 65 ------DQTTAKQWREKLYQELTEPLSIILVDERYTTLEARDRYWQMFPPKGLTKLLPQG 118
Query: 127 VSRKKRIQKVDSIAAALILQEVLDRISF 154
+ + R +D I A L+++ L+R++
Sbjct: 119 LRQPPR--PIDDIVAILLIERYLNRLTE 144
>gi|75909488|ref|YP_323784.1| resolvase, RNase H-like protein fold [Anabaena variabilis ATCC
29413]
gi|75703213|gb|ABA22889.1| Resolvase, RNase H-like fold protein [Anabaena variabilis ATCC
29413]
Length = 149
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 31/164 (18%)
Query: 3 ILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
++ + + + I D G + GLA+ R+ + + + +
Sbjct: 1 MMNLSEFSPTQP---VILGFDPGKDKCGLAVMGLDRQLYYHQVVA----AADAIAIINTL 53
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI- 121
I+ ++G + + R + + V DER +T+ A+
Sbjct: 54 RQQFPISMLVMGN----------QTTAKRWKQQLQQELAEALNIVLVDERYSTLEARDRY 103
Query: 122 -----------LIDMNVSRKKRIQKVDSIAAALILQEVLDRISF 154
L+ + + R +D I A L+++ L R++
Sbjct: 104 WQMYPPQGLIKLLPHGMRQPPR--PIDDIVAILLIERYLSRLTE 145
>gi|325846601|ref|ZP_08169516.1| Holliday junction resolvase-like domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481359|gb|EGC84400.1| Holliday junction resolvase-like domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 38
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKV 52
I +DLG K IG+A+SDP A + RKK+
Sbjct: 1 MSRIMGLDLGDKTIGVALSDPFFITAQAYLTIKRKKL 37
>gi|119513399|ref|ZP_01632431.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414]
gi|119461949|gb|EAW42954.1| hypothetical protein N9414_19502 [Nodularia spumigena CCY9414]
Length = 147
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 31/162 (19%)
Query: 4 LLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
+ + + I D G + GLA+ R+ + + +K + +
Sbjct: 1 MTFSEFSPTQP---VILGFDPGKDKCGLAVMGLDRQLYYHQVVTAQK----AIATIETLR 53
Query: 64 TTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI-- 121
++ ++G R + + + DER +T+ A+
Sbjct: 54 QQFPVSLLVMGNQTTSK----QWKQQLREALVEQLS------IILVDERYSTLEARDRYW 103
Query: 122 ----------LIDMNVSRKKRIQKVDSIAAALILQEVLDRIS 153
L+ + + R +D I A L+++ L+R++
Sbjct: 104 QMYPPKGLTKLLPQGMRQPPR--PIDDIVALLLIERYLNRLT 143
>gi|220909831|ref|YP_002485142.1| Resolvase RNase H domain-containing protein fold protein
[Cyanothece sp. PCC 7425]
gi|219866442|gb|ACL46781.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7425]
Length = 137
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 32/150 (21%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G ++ G+A+ R + + S T I+ ++G
Sbjct: 2 ILGFDPGRQKCGIAVMGLDRSI----HYHQVVSSEAAIATIESLRQTYPISLLVMGDQTT 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVP--FVFWDERLTTVSAQQ------------ILID 124
+ + + P + DER +T++A+ LI
Sbjct: 58 AKQ------------WKQKLSQSLPQPLTIISVDERYSTLTARDRYWQMYPPRGLYRLIP 105
Query: 125 MNVSRKKRIQKVDSIAAALILQEVLDRISF 154
+ R VD I A ++++ L+R+++
Sbjct: 106 KGMRGTPR--PVDDIVAIVLIERYLERLTY 133
>gi|17231886|ref|NP_488434.1| hypothetical protein alr4394 [Nostoc sp. PCC 7120]
gi|17133530|dbj|BAB76093.1| alr4394 [Nostoc sp. PCC 7120]
Length = 148
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 24/146 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + GLA+ R+ + + + + I+ ++G
Sbjct: 13 ILGFDPGKDKCGLAVMGLDRQLYYHQVVASAD----AIAIINTLRQQFPISMLVMGN--- 65
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+ + R + + V DER +T+ A+ M +
Sbjct: 66 -------QTTAKRWKQQLQQELAEALNIVLVDERYSTLEARDRYWQMYPPKGLTKLLPHG 118
Query: 134 -----QKVDSIAAALILQEVLDRISF 154
+ +D I A L+++ L+R++
Sbjct: 119 MRQPPRPIDDIVAILLIERYLNRLTE 144
>gi|224032053|gb|ACN35102.1| unknown [Zea mays]
Length = 167
Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV 48
M +L E+L + + + +D+G+K +G+AISD R A P F
Sbjct: 1 MRLLQAEELFRKVLEVGSKNKAARLLGLDVGSKYVGVAISDEKNRVAMPLRFGK 54
>gi|158337164|ref|YP_001518339.1| hypothetical protein AM1_4040 [Acaryochloris marina MBIC11017]
gi|158307405|gb|ABW29022.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 153
Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 26/144 (18%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G ++ GLA+ + + + +Q + + I+ ++G
Sbjct: 16 ILGFDPGRQKCGLAVMGIDQTIHWHQVVVA----SQVIDSINALCEIYPISLLVMGNQTT 71
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTVSAQQILID----MNVSR---- 129
++ ++ + ++ + V DER +T+ A+ + R
Sbjct: 72 -----------SKEWLQVLNEKYALNLDIVQVDERNSTLEARSRYWQIYPPQGIHRFIPQ 120
Query: 130 --KKRIQKVDSIAAALILQEVLDR 151
+K +D I A L+++ L++
Sbjct: 121 SLRKINHPIDDIVAILLIERYLEK 144
>gi|332295431|ref|YP_004437354.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium
narugense DSM 14796]
gi|332178534|gb|AEE14223.1| Resolvase RNase H domain protein fold protein [Thermodesulfobium
narugense DSM 14796]
Length = 134
Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 23/141 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G+ +IG AI D L + + L FI I ++G
Sbjct: 2 ILGIDAGSYKIGYAILDERYNIFSKGIIL----LNDFKKDFLRFIKEYEIEVVVVGSGTG 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRK-------- 130
+ + + + + + + ER T+V A+ I+ K
Sbjct: 58 H-----------KKVMKLIDELNLDLKVIVISERNTSVEAKWRYINSLKGFKGFFCKLFG 106
Query: 131 KRIQKVDSIAAALILQEVLDR 151
+ VD I+A +I + L+
Sbjct: 107 YLDKPVDDISAVIIAERYLNE 127
>gi|220932583|ref|YP_002509491.1| Resolvase RNase H domain protein fold protein [Halothermothrix
orenii H 168]
gi|219993893|gb|ACL70496.1| Resolvase RNase H domain protein fold protein [Halothermothrix
orenii H 168]
Length = 131
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 16/106 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ +ID G + G+A+ D + + K L ++ ++G
Sbjct: 2 VLAIDPGRDKCGIAVVDRNLKIFYRAIVSPGK----LGSYLQKLSHRYSLEGIVLGN--- 54
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID 124
G + +I+ V +P DE TT+ A++
Sbjct: 55 -----GTFSGEVKK----IIEATVNIPVHEVDESYTTLEAEERYRQ 91
>gi|307154188|ref|YP_003889572.1| Resolvase RNase H domain-containing protein fold protein
[Cyanothece sp. PCC 7822]
gi|306984416|gb|ADN16297.1| Resolvase RNase H domain protein fold protein [Cyanothece sp. PCC
7822]
Length = 132
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 24/145 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+AI R+ + + + + I ++G
Sbjct: 2 ILGFDPGRDKCGVAIMGNDRQIYYHEVV----ESDGAISVINTLFQQYPIELLVMGN--- 54
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR------ 132
+ S + +P V DER +++ A+ +M + +
Sbjct: 55 -------QTTSKTWKAKLETELAESIPIVMVDERNSSLEARDRYWEMYPPKGLQWFIPQG 107
Query: 133 ----IQKVDSIAAALILQEVLDRIS 153
+ +D + A L+++ L++
Sbjct: 108 MRLPPRPIDDLVAILLIERYLNKTP 132
>gi|254416125|ref|ZP_05029880.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC
7420]
gi|196177058|gb|EDX72067.1| hypothetical protein MC7420_7547 [Microcoleus chthonoplastes PCC
7420]
Length = 127
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 28/141 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + GLA+ + ++ + Q + I ++G
Sbjct: 2 ILGFDPGRDKCGLAVKGKDQEISYHQVIP----SDQAIATIKRLSQQFPIETIVMGNQTT 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDMN 126
+G +P V DER +T+ A+ Q LI
Sbjct: 58 SKQWQGKIREVI----------SAPIPIVLVDERYSTLEARDRYWQMYPPKGLQRLIPQG 107
Query: 127 VSRKKRIQKVDSIAAALILQE 147
+ + R +D I A L+++
Sbjct: 108 MRQPPR--PIDDIVAILLIER 126
>gi|302847257|ref|XP_002955163.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
nagariensis]
gi|300259455|gb|EFJ43682.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
nagariensis]
Length = 215
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPL 77
+ +D GT GLA+ G +R K++ A ++L+ + + ++G+P+
Sbjct: 40 VLGVDYGTSITGLALGRNGWCSPLKSIPSLRTSKLSDVARQVLATALEQRVEGMVVGIPV 99
Query: 78 NMNG------SEGPRVHSTRAFVHN--MIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
G ++ R H ++ ++ +P ++E+ TT + + L R
Sbjct: 100 QPGGSIVKPHTDSRLGSRCRNLAHTLALMAKEHGIPVYLYNEKDTTRATMKTLGYNWTDR 159
Query: 130 ----KKRIQKVDSIAAALILQEVL 149
+K+ K+DS +AA++L+
Sbjct: 160 LSGQEKQACKLDSESAAMLLRLYF 183
>gi|298490371|ref|YP_003720548.1| resolvase RNase H domain-containing protein fold protein ['Nostoc
azollae' 0708]
gi|298232289|gb|ADI63425.1| Resolvase RNase H domain protein fold protein ['Nostoc azollae'
0708]
Length = 145
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 24/145 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ R+ + + I ++G
Sbjct: 8 ILGFDPGRDKCGVAVMGVDRQLYDHQVVA----GNDAIAHIEILRRKFPIFLIVMG---- 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM----NVSRKKRIQ 134
+ + + + + + DER TT+ A++ M +++
Sbjct: 60 ------DQTTAKKWKQQLNQELTDMLNIILIDERYTTLEARERYWQMFPPTGLTKLLPKG 113
Query: 135 K------VDSIAAALILQEVLDRIS 153
+D I A L+++ L+R++
Sbjct: 114 MRQPPRPIDDIVAILLIERYLNRLT 138
>gi|165924192|ref|ZP_02220024.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
334]
gi|165916368|gb|EDR34972.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
334]
Length = 60
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTEN 67
D G KRIG+A+ A+ L + ++ I T +
Sbjct: 9 LGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKMLIETWH 56
>gi|238927584|ref|ZP_04659344.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531]
gi|238884509|gb|EEQ48147.1| resolvase, RNase H domain protein [Selenomonas flueggei ATCC 43531]
Length = 132
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 28/144 (19%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ I +ID G ++ G+A+ + ++ + I+G
Sbjct: 2 SGNILAIDPGREKCGVAVLAADGTVLLQEVIPTAR-----LADVTGALLERYAPTVIMGN 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G + +A V + DE TT +A+ + R R
Sbjct: 57 --------GTTSAAAKACVEEL-----GHEVNLVDEYRTTDAAKCAYWAAHPPRGWRRFV 103
Query: 136 ----------VDSIAAALILQEVL 149
VD A ++ Q L
Sbjct: 104 PRGMLVPPVPVDDFVAVILAQRYL 127
>gi|313894648|ref|ZP_07828211.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440838|gb|EFR59267.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
Length = 175
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 22/142 (15%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ N I ++D G ++ G+AI P R + K L I +
Sbjct: 1 MTENTYILAVDPGNEKTGVAIVTPDGSMV-CRNIISTKTFNDDIERL--LTEYYGIVHIV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G N I R + DE +T A+++ N R
Sbjct: 58 CGNGTNHKYLYPSL---------QQIGRNHKITTSLIDESHSTEEARKLYWKYNPPTGWR 108
Query: 133 I----------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 109 KFLPTSMQFPPEPVDDLTALVI 130
>gi|291533811|emb|CBL06924.1| Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Megamonas hypermegale ART12/1]
Length = 62
Score = 47.6 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTE 66
I S+D+G + +G+A+SD A + RK +
Sbjct: 1 MRIMSLDIGDRTVGIAVSDELLFTAQGVETIRRKSYKHDLARIRELSKQY 50
>gi|87125088|ref|ZP_01080935.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917]
gi|86167408|gb|EAQ68668.1| Resolvase, RNase H-like fold [Synechococcus sp. RS9917]
Length = 143
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 27/144 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + GL + + R L + V E I+ ++G
Sbjct: 1 MTRLLAIDPGRSKCGLVLCELNRHRVIEGLVLPVEDVLHQIQRWS---DEEPISTVVLGN 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ +P +ER TT+ A+ + R R
Sbjct: 58 GT--------------GSADWEQRLRPLLPVELVEERGTTLRARARYWTLRPPRGWRRLL 103
Query: 136 ----------VDSIAAALILQEVL 149
+D+ AA ++L++
Sbjct: 104 PEGLRLPPLDLDAFAALVMLEDHF 127
>gi|242054501|ref|XP_002456396.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor]
gi|241928371|gb|EES01516.1| hypothetical protein SORBIDRAFT_03g035490 [Sorghum bicolor]
Length = 51
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 1 MSILLIEDLVKSL------KPNQPIASIDLGTKRIGLAISDPGRRFAHP 43
M +L E+L + + + +D+G+K +G+++SD R A P
Sbjct: 1 MRLLQAEELFRKVLEVGSKNKATRLLGLDVGSKYVGVSVSDEKNRIALP 49
>gi|22298193|ref|NP_681440.1| hypothetical protein tlr0651 [Thermosynechococcus elongatus BP-1]
gi|22294372|dbj|BAC08202.1| tlr0651 [Thermosynechococcus elongatus BP-1]
Length = 143
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 27/149 (18%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ ++ + D G + GLA++ + + +
Sbjct: 1 MMAMGRTKYFLGFDPGQDKCGLALA-----LGQEVVRHEVVASDRAIACVQEWHQAYPFE 55
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSR 129
IIG + + V + DER +T+ A+ + R
Sbjct: 56 QVIIGNQTTS------------RRWQQQLQAALAVEIIPVDERHSTLEARDRYWQLFPPR 103
Query: 130 KKRI----------QKVDSIAAALILQEV 148
+ + +D I A ++L+
Sbjct: 104 GWQRLIPKGLRVPPRPIDDIVAIVLLERY 132
>gi|56751384|ref|YP_172085.1| hypothetical protein syc1375_c [Synechococcus elongatus PCC 6301]
gi|81298940|ref|YP_399148.1| resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942]
gi|56686343|dbj|BAD79565.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81167821|gb|ABB56161.1| Resolvase, RNase H-like fold [Synechococcus elongatus PCC 7942]
Length = 143
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 24/140 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
D G + GLA+ + L + + ++G
Sbjct: 8 WIGFDPGRDKCGLALMEAQTGQILEHRILASAEAIAVL---AQLFQARSPQLLVLGNQTT 64
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
++ + + P DER +T+ A+ M R R
Sbjct: 65 -----------SQQWQAQLSALPSAPPIALVDERNSTLEARDRYWQMYPVRGWRRLLPQG 113
Query: 134 -----QKVDSIAAALILQEV 148
+ VD + A L+L+
Sbjct: 114 LRQPPRPVDDLVAILLLERY 133
>gi|300867463|ref|ZP_07112117.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300334578|emb|CBN57285.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 132
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 29/144 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+A+ R ++ + T + I ++G
Sbjct: 2 ILGFDPGRDKCGIAVM-GLDREVRYHQVVLAENAIATIES---LCSQFPIELIVMGDQTT 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA------------QQILIDMN 126
+R++ + V V DER +++ A LI
Sbjct: 58 -----------SRSWKQKISASLPLVEVVQVDERYSSLEARDRFWEMFPPKGFNRLIPQG 106
Query: 127 VSRKKRIQKVDSIAAALILQEVLD 150
+ R VD I A ++++ L+
Sbjct: 107 MRTPPR--PVDDIVAIVLIERYLN 128
>gi|258645767|ref|ZP_05733236.1| conserved hypothetical protein [Dialister invisus DSM 15470]
gi|260403138|gb|EEW96685.1| conserved hypothetical protein [Dialister invisus DSM 15470]
Length = 144
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G+ + G+A+ A + E+ + +I ++G +
Sbjct: 2 ILALDPGSVKTGVAVVHKDGSLAWKKVIQ----TEDFEKEVQGVLDAYDIGVIVMGNGTH 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
+ V + +R+ V DE+ TT
Sbjct: 58 HKEMQQRTVMLLK-------EREKNVKIELVDEKYTTEM 89
>gi|33864100|ref|NP_895660.1| hypothetical protein PMT1833 [Prochlorococcus marinus str. MIT
9313]
gi|33635684|emb|CAE22008.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 152
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 27/145 (18%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D G + GL ++D + V + + +A +IG
Sbjct: 9 TMTRLVAVDPGRNKCGLVLADTATNAVLEGKVVAAAAVLDLIMHWQNQA---PLAGILIG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
NG+ + + P +ER +T+ A+ ++ R
Sbjct: 66 -----NGTSSEYWQNLLRHIA---------PLHVVEERGSTLRARHRYWELWPPSNWRRW 111
Query: 134 ---------QKVDSIAAALILQEVL 149
+D+IAA ++L++ L
Sbjct: 112 LPRGMILPPHHLDAIAAMVLLEDHL 136
>gi|113475680|ref|YP_721741.1| resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101]
gi|15420712|gb|AAK97425.1|AF382392_1 unknown [Trichodesmium erythraeum IMS101]
gi|110166728|gb|ABG51268.1| Resolvase, RNase H-like fold [Trichodesmium erythraeum IMS101]
Length = 133
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 24/142 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I D G + G+AI D R+ ++ T + + L
Sbjct: 2 ILGFDPGRDKCGIAIMD-----------KNRQLHYNQVVDSAKITITITKLSQQFDINLI 50
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+ G + + + ++ +P + DER +++ A+ +N +
Sbjct: 51 IIGDQTTSKIWQQNLTEIISEK---IPIIKIDERYSSLEARDRYWQINPPQGFVRLIPPG 107
Query: 134 -----QKVDSIAAALILQEVLD 150
+ +D I A ++++ L+
Sbjct: 108 MRIPPKPIDDIVAIILIERYLN 129
>gi|170078280|ref|YP_001734918.1| hypothetical protein SYNPCC7002_A1673 [Synechococcus sp. PCC 7002]
gi|13924476|gb|AAK49024.1| hypothetical protein [Synechococcus sp. PCC 7002]
gi|169885949|gb|ACA99662.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
Length = 133
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 28/147 (19%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
D G + GLA D + + Q + ++ ++G
Sbjct: 1 MSVYLGFDPGRDKCGLAALDDQGQLLNHGVIAA----DQAPNIAKEWCQRYGVSLVVMGN 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA------------QQILI 123
+ F +ER +T+ A Q L+
Sbjct: 57 QTTAKEWHQKLTAV----------LPPDMAIAFVNERNSTLEARDRYWQMYPPNLFQRLL 106
Query: 124 DMNVSRKKRIQKVDSIAAALILQEVLD 150
+ R +D I A L+++ L+
Sbjct: 107 PQGMRLPPR--PIDDIVAILLVERYLN 131
>gi|86609221|ref|YP_477983.1| hypothetical protein CYB_1763 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557763|gb|ABD02720.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 154
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 11/111 (9%)
Query: 11 KSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAA 70
LK + + D G + G+A+ + L +
Sbjct: 8 ARLKSERVLIGFDPGRDKCGIAVVQVFTQTELKVLHREVVPSAAALSRLQTLRQQFQAEQ 67
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
I+G +A+ + V DER ++ A+Q
Sbjct: 68 VILGNQTT-----------AQAWKSQLESILPPQQIVLVDERHSSQEARQR 107
>gi|284049003|ref|YP_003399342.1| Resolvase RNase H domain protein fold protein [Acidaminococcus
fermentans DSM 20731]
gi|283953224|gb|ADB48027.1| Resolvase RNase H domain protein fold protein [Acidaminococcus
fermentans DSM 20731]
Length = 138
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 25/147 (17%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ +D G + G A+ L +F+ E+ A +
Sbjct: 1 MNKKALYLGVDPGRDKTGAALVAGDGTLVRQAILP----TDHFTDHLRAFLAGESPAGCV 56
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G +G+ +H + P DE +T A+++ + R +
Sbjct: 57 LG-----DGTTSTTMHRQLEETFPRL------PLFTVDEYGSTQEAKKLYWQLFPPRGWK 105
Query: 133 I----------QKVDSIAAALILQEVL 149
VD +AAA++++ L
Sbjct: 106 RFLPQALLDAPSAVDGLAAAVLVRRYL 132
>gi|86605919|ref|YP_474682.1| hypothetical protein CYA_1236 [Synechococcus sp. JA-3-3Ab]
gi|86554461|gb|ABC99419.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
Length = 138
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 13/103 (12%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ D G + GLA+ A + L + I+G
Sbjct: 2 LMGFDPGRDKCGLAVVQVQP--AWQVLHREVVSAGEALARLQALWQQFGAERLILGNQTT 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQI 121
R + + V DER ++ A++
Sbjct: 60 -----------ARGWKRQLESLLPPQQIVLVDERHSSEEARRR 91
>gi|312142812|ref|YP_003994258.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp.
'sapolanicus']
gi|311903463|gb|ADQ13904.1| Resolvase RNase H domain protein fold protein [Halanaerobium sp.
'sapolanicus']
Length = 139
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 26/145 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ S+D G +IG A+ R R+K + E + I
Sbjct: 5 LLSLDPGRNKIGTAV--------ISRDKEEREKTIVSLTEFEDHLNEIFDKYQI------ 50
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ-QILIDMNVSRKKR----- 132
N + + K+ DE+ +T AQ + L + +SR ++
Sbjct: 51 -NEIIVGNGTGAEKIIKKIEKLKINKKITVVDEKFSTEEAQARYLREKPMSRYEKLLRKF 109
Query: 133 -----IQKVDSIAAALILQEVLDRI 152
+ +D AA +I ++ L+++
Sbjct: 110 ISWKVKKPLDDYAALIIAEKYLEKL 134
>gi|269797615|ref|YP_003311515.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008]
gi|269094244|gb|ACZ24235.1| hypothetical protein Vpar_0552 [Veillonella parvula DSM 2008]
Length = 175
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ N I ++D G ++ G+AI P + T I +
Sbjct: 1 MTENTYILAVDPGNEKTGVAILSPSG---EMICRKIISSNTFNKDIERILTEYYGIVHIV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G N I R + DE +T A+++ N R
Sbjct: 58 CGNGTNHKHLYPSL---------QQIGRNHKITTSLIDESHSTEEARKLYWQYNPPTGWR 108
Query: 133 I----------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 109 KIIPTSMQFPPEPVDDLTALVI 130
>gi|294795166|ref|ZP_06760300.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
gi|294453958|gb|EFG22333.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
Length = 175
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 22/136 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+AI P + + ++ I + G N
Sbjct: 7 ILAVDPGNEKTGVAIVTPSGTMVCRKIIMTKQ---FNGEIERILTEYYGIVHMVCGNGTN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
I R + DE +T A+++ N R
Sbjct: 64 HKYLYPSL---------QQIGRNHKITTSLIDESHSTEEARKLYWKYNPPTGWRKIIPTS 114
Query: 134 -----QKVDSIAAALI 144
+ VD + A +I
Sbjct: 115 MQFPPEPVDDLTAFVI 130
>gi|294793347|ref|ZP_06758492.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
gi|294455778|gb|EFG24143.1| conserved hypothetical protein [Veillonella sp. 6_1_27]
Length = 175
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ N I ++D G ++ G+AI P + T I +
Sbjct: 1 MTENTYILAVDPGNEKTGVAILSPSG---EMICRKIISSNTFNKDIERILTEYYGIVHIV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G N I R + DE +T A+++ N R
Sbjct: 58 CGNGTNHKHLYPSL---------QQIGRNHKITTSLIDESHSTEEARKLYWQYNPPTGWR 108
Query: 133 I----------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 109 KIIPTSMQFPPEPVDDLTALVI 130
>gi|282850062|ref|ZP_06259444.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282580251|gb|EFB85652.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 175
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
+ N I ++D G ++ G+AI P + T I +
Sbjct: 1 MTENTYILAVDPGNEKTGIAIVSPSG---EMICRKIISSNTFNEDIERVLTEYYGIVHIV 57
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
G N I R + DE +T A+++ N R
Sbjct: 58 CGNGTNHKHLYPSL---------QQIGRNHKITTSLIDESHSTEEARKLYWQYNPPTGWR 108
Query: 133 I----------QKVDSIAAALI 144
+ VD + A +I
Sbjct: 109 KIIPTSMQFPPEPVDDLTALVI 130
>gi|323140937|ref|ZP_08075850.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp.
YIT 12067]
gi|322414675|gb|EFY05481.1| hypothetical protein HMPREF9443_00615 [Phascolarctobacterium sp.
YIT 12067]
Length = 136
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 25/144 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+D G + GLA+ + + A EL F+ + + I+G
Sbjct: 1 MSNYLGVDPGRSKTGLALVAADGKILSLHIAM----TDNLAAELRQFVGSAKLQGIIMGN 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
N +A + + + E +T A+ + N + R
Sbjct: 57 GTNN-----------KAIGAVLRELYPDLVPELVGEAYSTEEARSLYWQENPPKGWRKLV 105
Query: 134 --------QKVDSIAAALILQEVL 149
+ +D+ AA + ++ L
Sbjct: 106 PLGLLVPPEPLDAYAAVVQVRRWL 129
>gi|238019694|ref|ZP_04600120.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748]
gi|237863735|gb|EEP65025.1| hypothetical protein VEIDISOL_01568 [Veillonella dispar ATCC 17748]
Length = 175
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 22/136 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ++D G ++ G+AI P R ++ K+ I + G N
Sbjct: 7 ILAVDPGNEKTGVAIVTPSGTMV-CRKIIMTKQFNDEIERT--LTEYYGIVHIVCGNGTN 63
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
I R + DE +T A+++ N R
Sbjct: 64 HKYLYPSL---------QQIGRNHRITTSLIDESHSTEEARKLYWKYNPPTGWRKIIPTS 114
Query: 134 -----QKVDSIAAALI 144
+ VD + A +I
Sbjct: 115 MQFPPEPVDDLTAFVI 130
>gi|320530393|ref|ZP_08031452.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399]
gi|320137357|gb|EFW29280.1| hypothetical protein HMPREF9555_01556 [Selenomonas artemidis F0399]
Length = 133
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 40/144 (27%), Gaps = 28/144 (19%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + G+A+ P T +S + E I+G
Sbjct: 1 MSTVLAIDPGRDKCGIAVLSPQGDILLHEIVP-----TGALETRVSELAAEYAPRIIMG- 54
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+ R DE TT +++ N R R
Sbjct: 55 ----DGTTSA-ATKARIEAQVGA-------VTLVDEYRTTEEGRRLYWAENPPRGWRRLV 102
Query: 136 ----------VDSIAAALILQEVL 149
VD AA + + L
Sbjct: 103 PRGLLTPTVPVDDFAAVALARRFL 126
>gi|297185088|gb|ADI21197.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
Length = 48
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 108 FWDERLTTVSAQQIL---IDMNVSRKKRIQKVDSIAAALILQEVL 149
DE ++ A ++L + + K + + VD+ AA LI + L
Sbjct: 1 MIDESYSSKEANEMLILERRLGLRGKIKKEMVDAAAATLIAERWL 45
>gi|124024147|ref|YP_001018454.1| hypothetical protein P9303_24581 [Prochlorococcus marinus str. MIT
9303]
gi|123964433|gb|ABM79189.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9303]
Length = 152
Score = 44.5 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 27/145 (18%)
Query: 15 PNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIG 74
+ ++D G + GL ++D + V + + E +IG
Sbjct: 9 TMTKLVAVDPGRNKCGLVLADTATSAVLEGKVVAAAAVLDLIMHWQNQAPLE---GILIG 65
Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI- 133
NG+ + + P +ER +T+ A+ ++ R
Sbjct: 66 -----NGTSSEYWQNLLLHIA---------PLHVVEERGSTLRARHRYWELWPPSNWRRW 111
Query: 134 ---------QKVDSIAAALILQEVL 149
+D+IAA ++L++ L
Sbjct: 112 LPRGMILPPHHLDAIAAMVLLEDHL 136
>gi|16331716|ref|NP_442444.1| hypothetical protein sll0832 [Synechocystis sp. PCC 6803]
gi|1001270|dbj|BAA10514.1| sll0832 [Synechocystis sp. PCC 6803]
Length = 151
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 28/153 (18%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ L D G + G+A+ R+ + + L + +
Sbjct: 9 LNKLPSCMNYLGFDPGRDKCGVAVMTGDRQILYHETIAA----QEVPQRLPALCEQYQVE 64
Query: 70 AFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQ--------- 120
++G + + ++ +E+ +TV A+Q
Sbjct: 65 QVVMGN-------QTTAKQWQKQLQSYLLPAMA---LALVNEKNSTVEARQRYWQMYPPQ 114
Query: 121 ---ILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
L+ + + R VD I A L+++ LD
Sbjct: 115 GLGRLVPLGLRTPPR--PVDDIVAILLIERYLD 145
>gi|309390180|gb|ADO78060.1| resolvase RNase H domain protein fold protein [Halanaerobium
praevalens DSM 2228]
Length = 145
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 30/154 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII-GLPL 77
+ ++D G +IG A+ D V++K EL ++ + + +
Sbjct: 5 LLALDPGRDKIGAAVLD--------YQAQVQEKTIVPLTELEDYLEELDCNYQLQEVIVG 56
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSA-QQILIDMNVS------RK 130
N G+ G + F + E TT +A ++ L + +S RK
Sbjct: 57 NGTGAAGVMELLQKNF--------DFKKINLVVEEFTTEAAQKRYLKEKPMSNYEKLLRK 108
Query: 131 ----KRIQKVDSIAAALILQEVLDRISFLESSKG 160
K + +D AA +I ++ L ++ ++S G
Sbjct: 109 FVNWKVSKALDDYAALIIGEKYLKKLD--KNSAG 140
>gi|302392906|ref|YP_003828726.1| Resolvase RNase H domain protein fold protein [Acetohalobium
arabaticum DSM 5501]
gi|302204983|gb|ADL13661.1| Resolvase RNase H domain protein fold protein [Acetohalobium
arabaticum DSM 5501]
Length = 127
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 27/141 (19%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G + GLA + + I + +IG
Sbjct: 2 ILGIDPGRDKCGLA----LMIDKEEIEICEVVATDRILDRIEELIAEYRVNKIVIG---- 53
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+G+ + DE +T+ A+++ N R
Sbjct: 54 -DGTSSSELLDRLD--------SDGFEIHQVDETNSTLEARKLYWQSNPPSSWRRLVPTS 104
Query: 134 -----QKVDSIAAALILQEVL 149
+ VD A ++++ L
Sbjct: 105 FQTPPEAVDGYVAVILIRRYL 125
>gi|330839723|ref|YP_004414303.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC
35185]
gi|329747487|gb|AEC00844.1| Resolvase RNase H domain fold protein [Selenomonas sputigena ATCC
35185]
Length = 139
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 25/144 (17%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+A++D G ++ G A+ D + + + LE+ + ++G
Sbjct: 5 TLAAVDPGREKCGFAVLDVHGTVLFQKVI----ETLKLGLEINDKCSRYAFTTLVLGNGT 60
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
+R + + + V DE TT A++ R
Sbjct: 61 T-----------SREAKKRIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRRLLPV 109
Query: 134 ------QKVDSIAAALILQEVLDR 151
+ VD A ++ + L++
Sbjct: 110 SMLVPPEPVDDFVAVILARRFLEK 133
>gi|260886294|ref|ZP_05897557.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
gi|260864013|gb|EEX78513.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
Length = 140
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 25/144 (17%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
+A++D G ++ G A+ D + + + LE+ + ++G
Sbjct: 6 TLAAVDPGREKCGFAVLDVHGTVLFQKVI----ETLKLGLEINDKCSRYAFTTLVLGNGT 61
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
+R + + + V DE TT A++ R
Sbjct: 62 T-----------SREAKKRIEEAVPDLRVVLVDEYRTTDMAKRAYWQARPPHGWRRLLPV 110
Query: 134 ------QKVDSIAAALILQEVLDR 151
+ VD A ++ + L++
Sbjct: 111 SMLVPPEPVDDFVAVILARRFLEK 134
>gi|284053053|ref|ZP_06383263.1| hypothetical protein AplaP_16418 [Arthrospira platensis str.
Paraca]
gi|291566867|dbj|BAI89139.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 132
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 30/143 (20%)
Query: 19 IASIDLGTKRIGLA-ISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
I D G + G+A + D + + Q + T E++ + +
Sbjct: 3 ILGFDPGRDKCGVAVVGDNQQVY-----------YHQVVAANDAIATVESLCSQFSVQLV 51
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ------------QILIDM 125
M R + + V DER +++ A+ L+
Sbjct: 52 VMGNQTTSRTWKQQMRAVL----PESIQIVEVDERYSSLQARDRYWEMYPPQGLSRLLPQ 107
Query: 126 NVSRKKRIQKVDSIAAALILQEV 148
+ R +D I A ++++
Sbjct: 108 GMRVPPR--PIDDIVAIILVERY 128
>gi|149183142|ref|ZP_01861591.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1]
gi|148849125|gb|EDL63326.1| hypothetical protein BSG1_20980 [Bacillus sp. SG-1]
Length = 24
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 130 KKRIQKVDSIAAALILQEVLDR 151
KKR + +D +AAA ILQ LD
Sbjct: 1 KKRKKVIDKMAAAFILQGYLDS 22
>gi|304437497|ref|ZP_07397455.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369547|gb|EFM23214.1| resolvase, RNase H domain protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 132
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 28/148 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ + ++D G ++ G+A+ + + I+G
Sbjct: 2 SGAVLAVDPGREKCGVAVLAADGTVLLQEVVPTTQ-----LTATAVRLIHTYAPTVIMGN 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
G + RA + + DE TT +A+ + R R
Sbjct: 57 --------GTTSAAARARIEEL-----GTEVTLVDEYRTTDAAKAAYWTAHPPRGWRRLM 103
Query: 136 ----------VDSIAAALILQEVLDRIS 153
VD A ++ Q L +S
Sbjct: 104 PRGMLVPPVPVDDFVAVILAQRYLTEVS 131
>gi|124025039|ref|YP_001014155.1| hypothetical protein NATL1_03261 [Prochlorococcus marinus str.
NATL1A]
gi|123960107|gb|ABM74890.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL1A]
Length = 145
Score = 42.6 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 25/147 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
SID G K+ GL ++D K + + I IIG
Sbjct: 1 MSLYISIDPGMKKCGLLLADMQSGEVIEACVASLNKFSDLVSQWNE---DHEIIKIIIGN 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
N ++ N + R + +ER +T+ A+ ++
Sbjct: 58 GTNCK------------YIENKLKRNNSFNINYVNERGSTLRARFRYWEIWPPNYFIRWL 105
Query: 134 --------QKVDSIAAALILQEVLDRI 152
+D+I A ++L++ L
Sbjct: 106 PKEILFPPANLDAIVALILLEDFLKYR 132
>gi|282855412|ref|ZP_06264733.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter
piscolens W5455]
gi|282586708|gb|EFB91955.1| polynucleotidyl transferase, ribonuclease H family [Pyramidobacter
piscolens W5455]
Length = 145
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 43/142 (30%), Gaps = 16/142 (11%)
Query: 20 ASIDLGTKRIG--LAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
ID G ++ G LA + + P + A + +
Sbjct: 3 LGIDPGRQKFGWALAGGEGKLVASGIVPAEKLEDFALKAARSCKDCEEWRLEGELPEDGK 62
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK-- 135
G R FV + R E TT+ A+++ DM+ R +
Sbjct: 63 IAKVFCGDGTGHAR-FVQALARRFA---VELVGELNTTLEARRLYWDMHPPRGLKRFVPL 118
Query: 136 --------VDSIAAALILQEVL 149
VD +AA IL+ L
Sbjct: 119 SLLVPPRCVDDLAAFCILRRAL 140
>gi|313895762|ref|ZP_07829317.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975591|gb|EFR41051.1| conserved hypothetical protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 133
Score = 42.6 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 28/137 (20%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + G+A+ P +S + E I+G
Sbjct: 1 MSTVLAIDPGRDKCGIAVLSPQGDVLLHEIVPTA-----ALETRVSELAAEYAPRIIMG- 54
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+ R + DE TT +++ N R R
Sbjct: 55 ----DGTTSA-AAKARIEAQAGA-------VILVDEYRTTEEGRRLYWAENPPRGWRRLV 102
Query: 136 ----------VDSIAAA 142
VD AA
Sbjct: 103 PRGLLTPAVPVDDFAAV 119
>gi|72383450|ref|YP_292805.1| hypothetical protein PMN2A_1614 [Prochlorococcus marinus str.
NATL2A]
gi|72003300|gb|AAZ59102.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL2A]
Length = 145
Score = 42.6 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 25/147 (17%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
SID G K+ GL ++D K + + I IIG
Sbjct: 1 MSLYISIDPGMKKCGLLLADMQSGEVIEAGVASLNKFSDLVSQWNE---DHEITKIIIGN 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
N ++ N + R + +ER +T+ A+ ++
Sbjct: 58 GTNCK------------YIENKLKRNNSFNINYVNERGSTLRARFRYWEIWPPNYFIRWL 105
Query: 134 --------QKVDSIAAALILQEVLDRI 152
+D+I A ++L++ L
Sbjct: 106 PKEILFPPANLDAIVALILLEDFLKYR 132
>gi|167945469|ref|ZP_02532543.1| hypothetical protein Epers_02645 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 57
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAH 42
+ D GT++IG+A+ A
Sbjct: 1 MTLLGFDFGTRKIGVAVGQTVSGTAS 26
>gi|312897530|ref|ZP_07756950.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis
F0359]
gi|310621382|gb|EFQ04922.1| hypothetical protein HMPREF9429_00203 [Megasphaera micronuciformis
F0359]
Length = 138
Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 21/136 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I +ID G+ + G+A+ ++K LL ++ + L
Sbjct: 2 ILAIDPGSVKTGVALVHEDGEL--------KEKRIIPTQSLLQYVQECYDSGA---LKSV 50
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+ G + + V F + +E+ TTV +++ + R
Sbjct: 51 VMGDGTRHESLGNLVKSWIGEGHDEVSFSYVNEKFTTVEGRKLYWQYTPRKGWRKFVPTS 110
Query: 134 -----QKVDSIAAALI 144
+ VD A +I
Sbjct: 111 WQYPPEPVDDFVAWII 126
>gi|116072069|ref|ZP_01469337.1| Resolvase, RNase H-like fold protein [Synechococcus sp. BL107]
gi|116065692|gb|EAU71450.1| Resolvase, RNase H-like fold protein [Synechococcus sp. BL107]
Length = 148
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 27/147 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D G + GL + D + + V ++ I+G
Sbjct: 1 MSRLVALDPGRSKCGLVLIDSEHNRVLEGKVVPPQAVMAWVDHWHE---QRSLDQVIVG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
+G+ + + +ER TT+ A+ D+ ++ +
Sbjct: 57 ----DGTGS---------AQWLQAFNRFANVQSVNERGTTLRARDRYWDLWPTKGWQRLL 103
Query: 134 --------QKVDSIAAALILQEVLDRI 152
++D+IAA ++ ++ L +
Sbjct: 104 PKGLRLPPNELDAIAALVMAEDHLKQR 130
>gi|78778635|ref|YP_396747.1| hypothetical protein PMT9312_0250 [Prochlorococcus marinus str. MIT
9312]
gi|78712134|gb|ABB49311.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 145
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ SID G + GL + D ++ L + + + + I+ ENI+ IIG
Sbjct: 1 MFKLISIDPGKCKCGLVVVDLHQKKVDQAVVLNTEFLPKHV---KTLISYENISKVIIG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
NG+ + F+ N + + +E+ TT A++ ++ +R +
Sbjct: 57 ----NGTTSRQNIEKLEFIKNDL--------IIVEEKNTTFRAKKRYFELFPTRGLKTFL 104
Query: 133 -------IQKVDSIAAALILQEV 148
+ +D+++A +IL++
Sbjct: 105 PKEIFIMNKNLDAVSALIILEDY 127
>gi|297379556|gb|ADI34443.1| Hypothetical protein HPV225_0354 [Helicobacter pylori v225d]
Length = 81
Score = 41.0 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 80 NGSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQK 135
G T A + + I VF +E +++ A + L + K+ + +
Sbjct: 1 MGKPNESYADTNARIEHFIKLLDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 60
Query: 136 VDSIAAALILQEV 148
+DS++A IL+
Sbjct: 61 LDSLSACRILERY 73
>gi|52549635|gb|AAU83484.1| conserved hypothetical protein [uncultured archaeon GZfos28G7]
Length = 431
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 19/125 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID GT IG+AI D +P K + + G PL
Sbjct: 13 IVGIDPGT-TIGVAIIDLEG---NPIEVFSSKNYS---------CSDVIERIISRGNPLI 59
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
+ P + + I R P DE L+T + L K + + D+
Sbjct: 60 VASDVTPTPSTVKR-----ISRIFSSPVHELDESLSTEE-KIALTKGEGYEYKNVHERDA 113
Query: 139 IAAAL 143
+AA +
Sbjct: 114 LAACV 118
>gi|255082690|ref|XP_002504331.1| predicted protein [Micromonas sp. RCC299]
gi|226519599|gb|ACO65589.1| predicted protein [Micromonas sp. RCC299]
Length = 405
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 7 EDLVKSLKPNQPI--ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFIT 64
++ + +D GT+R G+A+S G P + + ++
Sbjct: 84 DEFKSLRAARGVVTALGVDYGTRRAGIAVS-VGGASPRPVAVVPATPPGELIDAVVRAAV 142
Query: 65 TENIAAFIIGLP 76
E ++GLP
Sbjct: 143 RERADVIVVGLP 154
Score = 35.6 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 11/87 (12%)
Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVY-------VPFVFWDERLTTVSAQQILIDM- 125
G + R F N+ D V DE T+ A I
Sbjct: 300 GSTNRRGRAPVKMHVLARRFAENLADAVRDAGLGAKGTRVVMVDESATSAEADLIASTAR 359
Query: 126 ---NVSRKKRIQKVDSIAAALILQEVL 149
+ + R +D IAA ++L
Sbjct: 360 GGRGLKDRPRGAHLDDIAAGVLLDRYF 386
>gi|292669941|ref|ZP_06603367.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648412|gb|EFF66384.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 143
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 29/150 (19%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ P+ +ID G ++ G+A+ G + + T ++ + + GL
Sbjct: 2 SGPVLAIDPGREKCGVAVLSAGGAIL-----------------VRKVVATADLGSCVGGL 44
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ +T A ++ + V DE TT A+++ D++ R R
Sbjct: 45 IAAHEPAVVMGNGTTSAEAKTRVE-CLGVTVTLADEYRTTDEAKRLYWDVHPPRGWRRFV 103
Query: 136 ----------VDSIAAALILQEVL-DRISF 154
VD A ++ + L ++ S
Sbjct: 104 PRGMLVPPVPVDDFVAVILARRFLAEQQSH 133
>gi|87301940|ref|ZP_01084774.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701]
gi|87283508|gb|EAQ75463.1| hypothetical protein WH5701_01405 [Synechococcus sp. WH 5701]
Length = 154
Score = 40.6 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 27/147 (18%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFI 72
L +A +D G + GL +D GR+ + Q L ++ + A I
Sbjct: 9 LPSQGALAGLDPGRSKCGLVRTDRGRQQLLEALVIP---PEQAWGRLEGWLLQGEVQAVI 65
Query: 73 IGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR 132
+G + P + +E +T++A+ ++N +R R
Sbjct: 66 LGNGT--------------GSASWRRRLEPLAPVLLVEEHGSTLAARARFFELNPTRGWR 111
Query: 133 I----------QKVDSIAAALILQEVL 149
+ D + A L+L+ +L
Sbjct: 112 RLLPQGLRQPPRDWDDVVAQLLLERLL 138
>gi|159902814|ref|YP_001550158.1| hypothetical protein P9211_02731 [Prochlorococcus marinus str. MIT
9211]
gi|159887990|gb|ABX08204.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 146
Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 25/140 (17%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+ID G ++ GL ++D ++ V ++ + I I+G +
Sbjct: 5 IAIDPGREKCGLILADLDNHIVIEGKVVISSSVLDLIIKWQN---NYEIKLIILGNGTSS 61
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN--------VSRKK 131
N F + + + +E TT A+ +++ + ++
Sbjct: 62 N------------FWYLKLIEVCKLSIKLVEESGTTFRARGRYFEISSPNFFLRFIPKQM 109
Query: 132 RI--QKVDSIAAALILQEVL 149
RI + +DS AA L+L++ L
Sbjct: 110 RIPPKNLDSFAALLLLEDYL 129
>gi|121534977|ref|ZP_01666795.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans
Nor1]
gi|121306390|gb|EAX47314.1| Resolvase, RNase H domain protein fold [Thermosinus carboxydivorans
Nor1]
Length = 141
Score = 40.6 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 22/141 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+ ++D G + G+A+ R T ++ + E AA ++
Sbjct: 5 VIAVDPGRDKCGVAVVSRDRGV-----LYKAVVPTAALAAAVAKLAREFGAATVVV---- 55
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
G + + ID + V DE +T A+ N R R
Sbjct: 56 --GDRTTGSAAVKQLSVQPIDGRRLH-IVTVDEHRSTDEARHRYWLENPPRGLRRLIPTT 112
Query: 134 -----QKVDSIAAALILQEVL 149
VD A ++ +
Sbjct: 113 MQVPPAPVDDYVAVILAERYF 133
>gi|303231000|ref|ZP_07317743.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
gi|302514382|gb|EFL56381.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
Length = 174
Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 24/143 (16%)
Query: 13 LKPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ IA++D G ++ G+AI S G R + K + +LS +
Sbjct: 1 MNNISYIAAVDPGNEKTGVAILSQAGELI--YRTIVETKTFNSSFESILSTYLGIHH--I 56
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+ G N I R + DE +T A+++ N
Sbjct: 57 VCGNGTNHKHLYPSI---------QQIGRNHKITTSLIDESHSTEEARKLYWQYNPPTGW 107
Query: 132 RI----------QKVDSIAAALI 144
R + VD + A +I
Sbjct: 108 RRFVPKGMQFPPEPVDDLTAYVI 130
>gi|303230200|ref|ZP_07316968.1| conserved hypothetical protein [Veillonella atypica
ACS-134-V-Col7a]
gi|302515126|gb|EFL57100.1| conserved hypothetical protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 174
Score = 40.3 bits (93), Expect = 0.087, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 24/143 (16%)
Query: 13 LKPNQPIASIDLGTKRIGLAI-SDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ IA++D G ++ G+AI S G R + K + +LS +
Sbjct: 1 MNNISYIAAVDPGNEKTGVAILSQAGELI--YRTIVETKTFNSSFESILSTYLGIHH--I 56
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKK 131
+ G N I R + DE +T A+++ N
Sbjct: 57 VCGNGTNHKHLYPSI---------QQIGRNHKITTSLIDESHSTEEARKLYWQYNPPTGW 107
Query: 132 RI----------QKVDSIAAALI 144
R + VD + A +I
Sbjct: 108 RRFVPKGMQFPPEPVDDLTAYVI 130
>gi|261885965|ref|ZP_06010004.1| Holliday junction resolvase-like protein [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 58
Score = 40.3 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 102 VYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLD 150
++ DE ++ A ++ D + + DSIAA +IL+ L+
Sbjct: 14 FDSEIIYVDEAYSSCEASELSKDS------KDGRFDSIAAMVILKRYLN 56
>gi|329121339|ref|ZP_08249965.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus
DSM 19965]
gi|327469748|gb|EGF15214.1| ribonuclease RNase H fold domain protein [Dialister micraerophilus
DSM 19965]
Length = 144
Score = 40.3 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 21/136 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G+++ G+A+ + K + E+ + I IG +
Sbjct: 2 ILSIDPGSEKTGIAVVKKDGNLVMKKII----KTERLEEEIKTLTKKIEITETAIGNGTH 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
E + + K +P DE+ TT +Q N + +
Sbjct: 58 HKKLE-------KRIEKLYEEMKKEIPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPFG 110
Query: 134 -----QKVDSIAAALI 144
+ VD A +I
Sbjct: 111 MRTVDKPVDDYVAWVI 126
>gi|169836674|ref|ZP_02869862.1| hypothetical protein cdivTM_06152 [candidate division TM7
single-cell isolate TM7a]
Length = 43
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 18 PIASIDLGTKRIGLAISDPGRRF 40
+ +D+G KRIG+A++D G +
Sbjct: 21 RLLCLDVGEKRIGVAVADLGVKI 43
>gi|20095000|ref|NP_614847.1| translation initiation factor 2, GTPase [Methanopyrus kandleri
AV19]
gi|19888260|gb|AAM02777.1| Translation initiation factor 2, GTPase [Methanopyrus kandleri
AV19]
Length = 744
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 19/143 (13%)
Query: 9 LVKSLKPNQPIASIDLGTKRIGLAI------SDPGRRFAHPRPFLVRKKVTQTALELLSF 62
L+ S PI S+D G G+A D K +
Sbjct: 487 LLSSAGAGGPILSVDPGEVNFGIAYIPRRGPCD-VTSVKLTGHTRDAKVEELRRTLKMFL 545
Query: 63 ITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
E +G + V + D V DER TT A L
Sbjct: 546 ADREEPNLVYVGNGPGHD-----------VAVEALGDVLPEAEIVLVDERETTKEAVYRL 594
Query: 123 IDMNV-SRKKRIQKVDSIAAALI 144
+ + + R + +AA I
Sbjct: 595 SSGKLENVRSRDLRDHGVAALAI 617
>gi|260881399|ref|ZP_05404313.2| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
gi|260848853|gb|EEX68860.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
Length = 137
Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 25/149 (16%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ IA++D G ++ G A+ + R Q E+ + A + G
Sbjct: 3 MERIAALDPGREKCGFAVLREDGKVLMQRVIETA----QLEQEVRAAREEHGFAVLVEG- 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
NG+ + + DE TT A++ R R
Sbjct: 58 ----NGTTSREARARLQKALPDLC------IEVVDEYRTTDLAKKAYWKAKPPRGWRRLL 107
Query: 134 --------QKVDSIAAALILQEVLDRISF 154
+ VD A ++ +
Sbjct: 108 PVTMQVPPEPVDDFVAVILASRYIKENHH 136
>gi|313892334|ref|ZP_07825926.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
gi|313119193|gb|EFR42393.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
Length = 144
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 23/137 (16%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFI-TTENIAAFIIGLPL 77
I SID G+++ G+A+ + T+ E + + I IG
Sbjct: 2 ILSIDPGSEKTGIAVVKKDGNLVMKKIIK-----TECLEEEIKILSKKFEIIETAIGNGT 56
Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI---- 133
+ E + + K +P DE+ TT +Q N + +
Sbjct: 57 HHKNLE-------KRIEKLYEEMKKEIPISIVDEKYTTEIGEQWYKKANPPKGWKRIIPF 109
Query: 134 ------QKVDSIAAALI 144
+ VD A +I
Sbjct: 110 GMRTVDKPVDDYVAWVI 126
>gi|290968959|ref|ZP_06560494.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290780915|gb|EFD93508.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 138
Score = 39.1 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I SID G+++ G+A+ L IA ++G N
Sbjct: 2 IFSIDPGSEKTGIAVIRQDGTLVEKHIIPTA----ALLSVLQDKTQQYTIAHIVMGDGTN 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+ + +V + F +E+ TTV +++ R R
Sbjct: 58 HKPLQVQVE-------QWLQSNRVPIDFSLVNEKFTTVEGRRLYFQYTPLRGWRRFIPRA 110
Query: 134 -----QKVDSIAAALILQEVLD 150
+ VD A +I + L+
Sbjct: 111 WQYPPEPVDDFVAWIIGKRYLE 132
>gi|325116530|emb|CBZ52084.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 711
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 106 FVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVLDRI 152
+DE LTT A++ + R R +DS +AA++ + LD
Sbjct: 617 VFLYDESLTTAEARRAQKE----RSSRGDFLDSQSAAVLGRRFLDER 659
>gi|317010615|gb|ADU84362.1| Holliday junction resolvase-like protein [Helicobacter pylori
SouthAfrica7]
Length = 84
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 81 GSEGPRVHSTRAFVHNMIDR-KVYVPFVFWDERLTTVSAQQILIDMNVSRKK---RIQKV 136
G T + + I VF +E +++ A + L + K+ + ++
Sbjct: 5 GKPNENYADTNIRIEHFIKLVDFKGEIVFINEDSSSIEACENLEYLGRKNKRLAIKDGRL 64
Query: 137 DSIAAALILQEV 148
DS++A IL+
Sbjct: 65 DSLSACGILERY 76
>gi|78185644|ref|YP_378078.1| resolvase, RNase H-like fold [Synechococcus sp. CC9902]
gi|78169938|gb|ABB27035.1| Resolvase, RNase H-like fold [Synechococcus sp. CC9902]
Length = 148
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 27/147 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ ++D G + GL + D + + V N+ I+G
Sbjct: 1 MSRLVALDPGRSKCGLVLIDSEHNRVLAGKVVPPEAVMAWVDHWHE---QHNLDQIIVG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
+G+ + D + +E TT+ A+ + ++ +
Sbjct: 57 ----DGTSS---------AQWVQDFNGFANVQSVNEHGTTLRARDRYWALWPAKGWQRLL 103
Query: 134 --------QKVDSIAAALILQEVLDRI 152
++D+IAA ++ ++ L +
Sbjct: 104 PKGLRLPPHELDAIAALVMAEDHLKQR 130
>gi|33864809|ref|NP_896368.1| hypothetical protein SYNW0273 [Synechococcus sp. WH 8102]
gi|33632332|emb|CAE06788.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 146
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 27/144 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +D G + GL + DP +R L +V + ++G
Sbjct: 1 MSHLVGLDPGRAKCGLVLVDPDQRLVLDGVVLPPSRVISQLKTWSNQGELR---LILLG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI-- 133
NG+ + + + + +ER TT+ A+ + ++ R
Sbjct: 57 ----NGTSSEQWNPALQRLAS---------VEIVEERGTTLRARDRYWQLWPAKGWRQML 103
Query: 134 --------QKVDSIAAALILQEVL 149
++D++AA +++++ L
Sbjct: 104 PRGLRLPPGELDAVAALVMVEDHL 127
>gi|116515277|ref|YP_802906.1| YggF [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|122285327|sp|Q056Y6|RUVX_BUCCC RecName: Full=Putative Holliday junction resolvase
gi|116257131|gb|ABJ90813.1| putative Holliday jonction resolvase [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 130
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 41 AHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
+ P + K ++ I +IG P + + I +
Sbjct: 25 STPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYPYKIKKKI----NKKIKKFAKEIKK 80
Query: 101 KVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALILQEVL 149
K + F DE +T A L + +K + SI+A +IL +
Sbjct: 81 KFKINFFLCDENYSTTEALLFLKEKKKKKKY---CLHSISAKIILDSWI 126
>gi|37521877|ref|NP_925254.1| hypothetical protein gll2308 [Gloeobacter violaceus PCC 7421]
gi|35212876|dbj|BAC90249.1| gll2308 [Gloeobacter violaceus PCC 7421]
Length = 136
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 25/141 (17%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G + GLA+ R+ Q ++ + +AA +IG
Sbjct: 2 ILGIDPGRSKCGLALVGLDRKLYFRSVVA----SDQLLKQVERLLEDFPVAALVIGDQTT 57
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+ + + V V ER ++ A+ N R
Sbjct: 58 -----------SEYWQAQLRAAFPEVRLVAVPERRSSEQARARYWQFNPPRGLNRLLPQD 106
Query: 134 -----QKVDSIAAALILQEVL 149
+ D + A ++++ L
Sbjct: 107 FRVPPEAYDDVVALILVERYL 127
>gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens]
Length = 548
Score = 37.9 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVR-KKVTQTALELLSFITTENIAAFIIGLPLN 78
+D G +R G+ + + P + +T A +++ E AF++GLPL+
Sbjct: 477 LGVDFGLRRTGVCVG--RGYASRPLEVVENCGNLTAHAAAIVALALREGATAFVVGLPLD 534
Query: 79 MNGSEGPRV 87
+GSE +
Sbjct: 535 RDGSETEQS 543
>gi|315929041|gb|EFV08280.1| holliday junction resolvase-like domain protein [Campylobacter
jejuni subsp. jejuni 305]
Length = 63
Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 83 EGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAA 142
E + FV + + F DE T+ A L + +K+ K+DS++A
Sbjct: 1 EEEMTRRIKHFVSLL---EFDKEICFVDESGTSKEA---LGYGVANTRKKDGKLDSLSAF 54
Query: 143 LILQEVL 149
+++++
Sbjct: 55 IMIKDYF 61
>gi|213622573|ref|ZP_03375356.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 40
Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTV 116
PLNM+G+E P R F + I + V DERL+TV
Sbjct: 1 PLNMDGTEQPLTARARKFAN-RIHGRFGVTVTLHDERLSTV 40
>gi|157412608|ref|YP_001483474.1| hypothetical protein P9215_02711 [Prochlorococcus marinus str. MIT
9215]
gi|157387183|gb|ABV49888.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9215]
Length = 145
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 26/143 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + GL +++ + + L + + IT E+I+ IIG
Sbjct: 1 MPKVITIDPGKSKCGLVLAEISEKKVYEAIILKSELLENYV---SYLITAEDISQIIIG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
NG+ + F V +DE+ TT A+ ++ R +
Sbjct: 57 ----NGTSSREIREKLYFFKK--------EIVTFDEKNTTYRAKARYFELFPIRGLKFLI 104
Query: 133 -------IQKVDSIAAALILQEV 148
+ +D+I+A +IL++
Sbjct: 105 PREVFILNKNLDAISALIILEDY 127
>gi|193084223|gb|ACF09886.1| hypothetical protein [uncultured marine crenarchaeote
AD1000-23-H12]
Length = 213
Score = 37.6 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 34/156 (21%)
Query: 3 ILLIEDLVKSLKPNQPIA--------------SIDLGTKRIGLAISDPGRRFAHPRPFLV 48
I+ IE+L + + N+ + ID G K IG++I
Sbjct: 64 IITIEELSQEITTNKELIISSLYNNKEDTMLVGIDPGEK-IGISI-----------YLKH 111
Query: 49 RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF 108
+ + T + + + + + + + + +
Sbjct: 112 YEIYSNTFNSVEATVDNLSKIIKKSKCSKKIIRVGTGFPKIGKQLIKEIFGECENIEIEQ 171
Query: 109 WDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI 144
DE T+ + ++ + D +A +I
Sbjct: 172 VDESGTS--------SLGKNKFGKKGTRDQYSARII 199
>gi|148243441|ref|YP_001228598.1| polynucleotidyl transferase [Synechococcus sp. RCC307]
gi|147851751|emb|CAK29245.1| Polynucleotidyl transferase, Ribonuclease H fold superfamily
[Synechococcus sp. RCC307]
Length = 141
Score = 37.6 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 24/139 (17%)
Query: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMN 80
++D G ++ GL +D ++ + ++G +
Sbjct: 7 ALDPGRQKCGLVRTDASGAELVDLLICSPREAWDWLQHWQHQA---PLQGVVLG-----D 58
Query: 81 GSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI------- 133
G+ A + VP V E +T++A++ + +R +
Sbjct: 59 GTASGPWQQALAELEPA------VPVVLQPEAGSTLAARERYWQLLPARGWQRLLPRGLR 112
Query: 134 ---QKVDSIAAALILQEVL 149
+ VD +AA ++L+ L
Sbjct: 113 LPPRPVDDLAAMVLLEAHL 131
>gi|117924758|ref|YP_865375.1| RNA-binding S1 domain-containing protein [Magnetococcus sp. MC-1]
gi|117608514|gb|ABK43969.1| RNA binding S1 domain protein [Magnetococcus sp. MC-1]
Length = 773
Score = 37.6 bits (86), Expect = 0.66, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 22/137 (16%)
Query: 5 LIEDLVKSLKPNQ-PIASIDLGTKRIG--LAISDPGR---RFAHPRPFLVRKKVTQTALE 58
++DL+ S P+ +D G R G +A+ D A P R +
Sbjct: 313 NLKDLLLSAPAGMVPVMGLDPGL-RTGVKVAVVDATGQVQTTATIYPHQPRNDWEGSIKA 371
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFV--FWDER---- 112
L I + IG G T V + R + E
Sbjct: 372 LSLLIKKYKVPLIAIGN--------GTASRETDRLVAELNRRHPDLKVTAVVVSEAGASV 423
Query: 113 LT-TVSAQQILIDMNVS 128
+ + A Q L +M+VS
Sbjct: 424 YSASAYASQELPEMDVS 440
>gi|91788399|ref|YP_549351.1| RNA-binding S1 [Polaromonas sp. JS666]
gi|91697624|gb|ABE44453.1| RNA binding S1 [Polaromonas sp. JS666]
Length = 803
Score = 37.2 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P RK +
Sbjct: 332 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRKDWDGSLHA 390
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH 95
L + IG ++ +
Sbjct: 391 LAKLCEKHGVNLIAIGNGTASRETDKLAADLIKLMAK 427
>gi|121604844|ref|YP_982173.1| RNA-binding S1 domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120593813|gb|ABM37252.1| RNA binding S1 domain protein [Polaromonas naphthalenivorans CJ2]
Length = 778
Score = 37.2 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 20/135 (14%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P RK +
Sbjct: 319 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDTTGKLVETATVFPHEPRKDWDGSLHT 377
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDER----LT 114
L + IG G T +++ R + V E +
Sbjct: 378 LAKLCEKHGVNLIAIGN--------GTASRETDKLAADLMKRIDGMQRVVVSEAGASVYS 429
Query: 115 -TVSAQQILIDMNVS 128
+ A Q + D++VS
Sbjct: 430 ASEFASQEMPDVDVS 444
>gi|303288922|ref|XP_003063749.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454817|gb|EEH52122.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 296
Score = 36.8 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G +R GLA+S P + + ++ E I+GLP
Sbjct: 80 LGVDYGRRRTGLAVS-STGASPIPLAVIPSVPPHELVRAVVDAARRERATEIIVGLPTQP 138
Query: 80 NGSEGPRVHSTRAFVHNMIDRKVY 103
SE R +T +
Sbjct: 139 AASEARRRTATGRARSCSKKNSTH 162
>gi|326514036|dbj|BAJ92168.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG + IG+AI A R V +++ +
Sbjct: 191 VTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 248
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + E V F+ + R V F E + A ++L
Sbjct: 249 YLGLQEHRLEGE-EYVEIIDEFMEAVFSRWPNVIVQF--EDFQSKWAFRLL 296
>gi|295394635|ref|ZP_06804854.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
[Brevibacterium mcbrellneri ATCC 49030]
gi|294972528|gb|EFG48384.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
[Brevibacterium mcbrellneri ATCC 49030]
Length = 740
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 68 IAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF-----WDERLTTVSAQQIL 122
++G P G + P DER +TV A++ +
Sbjct: 342 QGGELVGEPPAQTGHSIEVRLYAEDPAEGW--KPQSGPVHRFDVPGVDERFSTVRARRAV 399
Query: 123 IDMNVSRKKRIQKVDSIA 140
+ S + VD A
Sbjct: 400 DNSGASIRLDAAYVDEAA 417
>gi|294101286|ref|YP_003553144.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM
12261]
gi|293616266|gb|ADE56420.1| hypothetical protein Amico_0275 [Aminobacterium colombiense DSM
12261]
Length = 154
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 22/148 (14%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQT-------ALELLSFITTENIAAF 71
I ID G +IG A +D + + LL ++
Sbjct: 2 ILGIDPGKDKIGWAFADSKGALLFSGIVNKEELSSFWEVFMQKQWHNLLPWLKEREKEPL 61
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMN----- 126
+ L + G F+ ++ + +E TT+ A+++ ++
Sbjct: 62 LSESELTIVVGNGTTCKEVLLFL-----KERGLDAQVVEEYGTTLEARKVYWRLHPPQGV 116
Query: 127 ---VSRKKRIQK--VDSIAAALILQEVL 149
+ + R+ VD +AA +I++ L
Sbjct: 117 WKFIPKSLRVPNRDVDDLAAFVIIRRYL 144
>gi|33860806|ref|NP_892367.1| hypothetical protein PMM0248 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633748|emb|CAE18707.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 145
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 51/144 (35%), Gaps = 26/144 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + G+ I+D + KKV + + + + G
Sbjct: 1 MSRVITIDPGISKCGVIIAD-----------IKEKKVYEAVVIKSHLLLQYVKKKYQSGK 49
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
+ + G + ++ + + +E+ +T A+Q ++ +
Sbjct: 50 NVQLLIGNGTSSKNYIKYL-----NQFEPDLIIAEEKNSTYRAKQRYFEIFPLTGIKCFL 104
Query: 133 -------IQKVDSIAAALILQEVL 149
+ +D++AA +I+++
Sbjct: 105 PREIFILNKNLDALAALIIMEDYF 128
>gi|219130580|ref|XP_002185440.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403154|gb|EEC43109.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 514
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 5/109 (4%)
Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
++D+GT LA+S P P + R+ + + + ++ + G
Sbjct: 109 SRTMAVDVGTVYTKLAVSYP-----KPEVIVTREGDRFFFNGIFYTDESMDRSSSLSGRA 163
Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
RA + DE + +L
Sbjct: 164 ALERYFYSENTVEDRANSKTIWSVLNPPNDGVVDEEEASKLISDLLSPA 212
>gi|89901260|ref|YP_523731.1| RNA-binding S1 [Rhodoferax ferrireducens T118]
gi|89345997|gb|ABD70200.1| RNA binding S1 [Rhodoferax ferrireducens T118]
Length = 807
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P RK +
Sbjct: 340 NLRDLLLAAPAGPRVVLGLDPGI-RTGVKVAVVDATGKLVDTATVYPHEPRKDWDGSLHI 398
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH 95
L ++ IG ++ +
Sbjct: 399 LARLCEKHGVSLIAIGNGTASRETDKLAADLIKLMAK 435
>gi|116075625|ref|ZP_01472884.1| hypothetical protein RS9916_39206 [Synechococcus sp. RS9916]
gi|116066940|gb|EAU72695.1| hypothetical protein RS9916_39206 [Synechococcus sp. RS9916]
Length = 147
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 30/146 (20%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
+A++D G + GL ++D + ++ E A +IG
Sbjct: 2 VAAVDPGRSKCGLVLADCSQGEIKDALVVLADDTRTQLERWHQHTPLE---ALVIG---- 54
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI----- 133
+G+ + P E TT+ A+ + +R R
Sbjct: 55 -DGTSSK---------AWQQQLQHLAPMRIVKEAGTTLRARDRYWQIWPARGWRRFLPKG 104
Query: 134 -----QKVDSIAAALILQEVLDRISF 154
++D IAA ++L+ D++
Sbjct: 105 LQLPPGELDGIAALVLLE---DQLPH 127
>gi|123965516|ref|YP_001010597.1| hypothetical protein P9515_02811 [Prochlorococcus marinus str. MIT
9515]
gi|123199882|gb|ABM71490.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9515]
Length = 145
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 46/144 (31%), Gaps = 26/144 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
I +ID G + G+ ++D + + + + + +IG
Sbjct: 1 MSIILAIDPGISKCGVIVADLTEKKVYEAVVI---NSCLLLKYVKKKYQDQKNIQCLIGN 57
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILID----MNVS--- 128
+ + +E+ +T A+Q + + +
Sbjct: 58 GTSSEIYINDLNQMV-------------PNVIIAEEKNSTFRAKQRYFEIFPLLGIKCFL 104
Query: 129 RKKR---IQKVDSIAAALILQEVL 149
++ + +D++AA +I+++
Sbjct: 105 PREIFILNKNLDALAALIIMEDYF 128
>gi|296417552|ref|XP_002838418.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634354|emb|CAZ82609.1| unnamed protein product [Tuber melanosporum]
Length = 667
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPG 37
+ I +D GT G+A D
Sbjct: 4 SKQRLIIGLDYGTTYTGVAFCDSS 27
>gi|261855147|ref|YP_003262430.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
neapolitanus c2]
gi|261835616|gb|ACX95383.1| crossover junction endodeoxyribonuclease RuvC [Halothiobacillus
neapolitanus c2]
Length = 188
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRP 45
+ ID G+ +G+A+ D R A
Sbjct: 5 RVMGIDPGSVTMGVAVLDFERGSATQIH 32
>gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I]
Length = 791
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGL 75
L + + IG
Sbjct: 390 LAALAARHKVELIAIGN 406
>gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822]
gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis]
Length = 791
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGL 75
L + + IG
Sbjct: 390 LAALAARHKVELIAIGN 406
>gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|34978385|sp|Q45388|TEX_BORPE RecName: Full=Protein tex
gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS]
Length = 791
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGL 75
L + + IG
Sbjct: 390 LAALAARHKVELIAIGN 406
>gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50]
gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50]
Length = 791
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKT 389
Query: 59 LLSFITTENIAAFIIGL 75
L + + IG
Sbjct: 390 LAALAARHKVELIAIGN 406
>gi|241864906|gb|ACS68536.1| low-specificity threonine aldolase [uncultured bacterium FLS18]
Length = 407
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 5 LIEDL----VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVR 49
I+D + + I +D GTKR G+A+ P A
Sbjct: 155 TIDDFNEAAKAAGIELRVILDLDTGTKRTGIAVGKPALALAQQIDKCDA 203
>gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N]
gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N]
Length = 790
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R T
Sbjct: 331 NLKDLLLAAPAGPKTVLGLDPGI-RTGCKIAVIDRTGKVVDTATVYPFEPRMDRKGTINT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDR 100
L + + IG SE F + R
Sbjct: 390 LAALCAKHKVELIAIGNGTASRESEKLVGEMMSQFSELSLTR 431
>gi|325111100|ref|YP_004272168.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
brasiliensis DSM 5305]
gi|324971368|gb|ADY62146.1| Crossover junction endodeoxyribonuclease ruvC [Planctomyces
brasiliensis DSM 5305]
Length = 167
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 13 LKPNQPIASIDLGTKRIGL----A-----ISDPGRRFAHPRPFLVRKKVTQTALELLSFI 63
+ Q I ID G R G A I D G A + ++ + A E+ + I
Sbjct: 1 MAQEQRILGIDPGLTRTGYGVLHAQDGRTILDEGGVIATTTNDTLADRIHEIATEVKAVI 60
Query: 64 TTENIAAFII 73
+ +I
Sbjct: 61 NDWKPSVMVI 70
>gi|218199659|gb|EEC82086.1| hypothetical protein OsI_26084 [Oryza sativa Indica Group]
Length = 579
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG IG+AI A R V +++ +
Sbjct: 147 VTDGSRILGLGDLGVHGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 204
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + E V F+ + R V F E + A ++L
Sbjct: 205 YLGLQEHRLEGE-EYVAIIDEFMEAVFARWPNVIVQF--EDFQSKWAFRLL 252
>gi|115472203|ref|NP_001059700.1| Os07g0496200 [Oryza sativa Japonica Group]
gi|34393731|dbj|BAC83246.1| putative malate dehydrogenase [Oryza sativa Japonica Group]
gi|113611236|dbj|BAF21614.1| Os07g0496200 [Oryza sativa Japonica Group]
gi|215686835|dbj|BAG89685.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637081|gb|EEE67213.1| hypothetical protein OsJ_24330 [Oryza sativa Japonica Group]
Length = 622
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG IG+AI A R V +++ +
Sbjct: 190 VTDGSRILGLGDLGVHGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 247
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + E V F+ + R V F E + A ++L
Sbjct: 248 YLGLQEHRLEGE-EYVAIIDEFMEAVFARWPNVIVQF--EDFQSKWAFRLL 295
>gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
Length = 718
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 6 IEDLVKSLKP--------NQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKV 52
I +LK ++ + ID G R G +A+ D A P +KKV
Sbjct: 298 INIFADNLKTLLLQPPVRDKRVLGIDPGF-RTGSKVAVVDEIGNLLATAAIYPHPPQKKV 356
Query: 53 TQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTR 91
++ +L IT N+ IG +E +
Sbjct: 357 SEAKEQLEELITEYNVDLIAIGNGTACRETEELAAEIIK 395
>gi|260219478|emb|CBA26323.1| Protein tex [Curvibacter putative symbiont of Hydra magnipapillata]
Length = 641
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P RK +
Sbjct: 354 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVDTATVFPHEPRKDWEGSLHT 412
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
L ++ IG ++ +
Sbjct: 413 LGKLCAKHSVNLIAIGNGTASRETDKLAADLIKLLAKM 450
>gi|317011091|gb|ADU84838.1| Holliday junction resolvase [Helicobacter pylori SouthAfrica7]
Length = 157
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+K+ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSKKCGYAIISYASNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|297627391|ref|YP_003689154.1| Carbohydrate kinase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296923156|emb|CBL57743.1| Carbohydrate kinase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 524
Score = 35.2 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 19 IASIDLGTKRIGLAISD-PGRRFAHPRPFLVRKKVTQTA------LELLSFITTENIAAF 71
+ ID GT+ +AI D GR A + + +
Sbjct: 12 VMGIDYGTESCRVAICDLRGRPIAIASTAYETTHPRPGWAEQNPEDWWKALQASTHKVLA 71
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDM 125
G+P + + + ++ ++ D R T +A+ D
Sbjct: 72 NAGIPASAIAGISYDATTLTLVAMDEKGEELRPAIMWMDVRATEQAARAADSDS 125
>gi|288941976|ref|YP_003444216.1| periplasmic solute binding protein [Allochromatium vinosum DSM 180]
gi|288897348|gb|ADC63184.1| periplasmic solute binding protein [Allochromatium vinosum DSM 180]
Length = 292
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVS 117
+ + + A GL +EG R R+ V + +L+T +
Sbjct: 195 RFMVYHPSWGYFAETYGLTQIPIEAEGKEPGPRRLAALIDQARREDVRVILAQPQLSTKA 254
Query: 118 AQQILIDMNVSRKKRIQKVDSIAAALI 144
A+Q+ ++ R++ VD++AA I
Sbjct: 255 AEQVAREIGG----RVEVVDTLAADYI 277
>gi|319793772|ref|YP_004155412.1| RNAase H [Variovorax paradoxus EPS]
gi|315596235|gb|ADU37301.1| Tex-like protein protein-like protein [Variovorax paradoxus EPS]
Length = 791
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P RK +
Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHN 96
L + IG ++ +
Sbjct: 382 LGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKM 419
>gi|239815851|ref|YP_002944761.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
gi|239802428|gb|ACS19495.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
Length = 791
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 9/112 (8%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P RK +
Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWD 110
L + IG ++ + + P + D
Sbjct: 382 LGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKM--AAQAGAPEMKVD 431
>gi|288939915|ref|YP_003442155.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
vinosum DSM 180]
gi|288895287|gb|ADC61123.1| crossover junction endodeoxyribonuclease RuvC [Allochromatium
vinosum DSM 180]
Length = 178
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 7/82 (8%)
Query: 14 KPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFII 73
P I ID G++ G + D + + + L I + A
Sbjct: 6 PPRHRILGIDPGSRNTGFGVIDTDGHHSVRVASGCIRVGEHPWPDRLGLIFDQVAAIVA- 64
Query: 74 GLPLNMNGSEGPRVHSTRAFVH 95
F
Sbjct: 65 ------EYQPHEMAVEQLIFAR 80
>gi|241764598|ref|ZP_04762614.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN]
gi|241365961|gb|EER60587.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN]
Length = 789
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGL 75
L + IG
Sbjct: 382 LAKLCEKHGVNLIAIGN 398
>gi|225021301|ref|ZP_03710493.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
ATCC 33806]
gi|224946034|gb|EEG27243.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
ATCC 33806]
Length = 223
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRR 39
M ++ IE + ID G R GL++ GR
Sbjct: 1 MPVVSIE--------GMRVMGIDPGLTRCGLSVVQAGRG 31
>gi|154319247|ref|XP_001558941.1| hypothetical protein BC1G_02575 [Botryotinia fuckeliana B05.10]
gi|150857006|gb|EDN32198.1| hypothetical protein BC1G_02575 [Botryotinia fuckeliana B05.10]
Length = 273
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 10 VKSLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ SL P+ + ID + RIGLA+S + + + + + E + +
Sbjct: 53 ISSLLPSAKVIGIDPSSSRIGLALSTYKNHPSLSFYEGIAEDLARFGNESFDAVFMNSTF 112
Query: 70 AFII 73
+++
Sbjct: 113 HWVV 116
>gi|305681296|ref|ZP_07404103.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
matruchotii ATCC 14266]
gi|305659501|gb|EFM49001.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
matruchotii ATCC 14266]
Length = 235
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRIGLAISDPGRR 39
M ++ IE + ID G R GL++ GR
Sbjct: 13 MPVVSIE--------GMRVMGIDPGLTRCGLSVVQAGRG 43
>gi|311739558|ref|ZP_07713393.1| crossover junction endoribonuclease subunit C [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305374|gb|EFQ81442.1| crossover junction endoribonuclease subunit C [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 221
Score = 34.9 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 14/127 (11%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFA------HPRPFLVRKKVTQTALELLSFITTENIA 69
+ ID G R GL++ GR A K +T+ L L
Sbjct: 38 GMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDD 97
Query: 70 A---FIIGLPLNMNGSEGPRVHSTRAFVHNMI-DRKVYVPFVFWDERLTTVSAQQILIDM 125
+ + G + + ++ + +P T ++ +
Sbjct: 98 YSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYM----YTPSEVKKAISGN 153
Query: 126 NVSRKKR 132
+ KK+
Sbjct: 154 GRADKKQ 160
>gi|300725972|ref|ZP_07059433.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14]
gi|299776756|gb|EFI73305.1| ATP-dependent DNA helicase RecG [Prevotella bryantii B14]
Length = 700
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 34/138 (24%)
Query: 3 ILLIEDLVKSLK---PNQPIASID---LG--TKRI------GLAISDPGRRFAHPRPFLV 48
I I +L + I S D +G KRI G + D A +
Sbjct: 49 IYTINELTSDMPFVQIKGKILSFDEFEMGPRKKRIVAHFSDGTGVCDIVWFRATQFVYKN 108
Query: 49 RKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVF 108
K + I G P NG + + P+
Sbjct: 109 YKVQQEYI---------------IFGKPTLFNGRYQFAHPDIDDASKLELSQMGMQPYYI 153
Query: 109 WDER-----LTTVSAQQI 121
ER LT+ S +++
Sbjct: 154 TTERMKKMGLTSRSMEKL 171
>gi|194289459|ref|YP_002005366.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
19424]
gi|193223294|emb|CAQ69299.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
19424]
Length = 781
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ +L+ + + + ID G R G +A+ D + A P R+ +
Sbjct: 324 NLHELLLAAPAGPKAVMGIDPGI-RTGCKVAVVDSTGKLLETATIYPHEPRRDWNGSLAV 382
Query: 59 LLSFITTENIAAFIIGL 75
L +A IG
Sbjct: 383 LARLAKQHGVALVSIGN 399
>gi|306836242|ref|ZP_07469224.1| crossover junction endoribonuclease subunit C [Corynebacterium
accolens ATCC 49726]
gi|304567834|gb|EFM43417.1| crossover junction endoribonuclease subunit C [Corynebacterium
accolens ATCC 49726]
Length = 190
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 14/127 (11%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFA------HPRPFLVRKKVTQTALELLSFITTENIA 69
+ ID G R GL++ GR A K +T+ L L
Sbjct: 5 GMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDD 64
Query: 70 A---FIIGLPLNMNGSEGPRVHSTRAFVHNMI-DRKVYVPFVFWDERLTTVSAQQILIDM 125
+ + G + + ++ + +P T ++ +
Sbjct: 65 YSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYM----YTPSEVKKAISGN 120
Query: 126 NVSRKKR 132
+ KK+
Sbjct: 121 GRADKKQ 127
>gi|302384292|ref|YP_003820115.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
subvibrioides ATCC 15264]
gi|302194920|gb|ADL02492.1| crossover junction endodeoxyribonuclease RuvC [Brevundimonas
subvibrioides ATCC 15264]
Length = 179
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 18 PIASIDLGTKRIG----LAISDPGRRFAHPRPFLVRK 50
I +D G +R G +A R AH
Sbjct: 12 RILGLDPGLRRTGWGVVVAEGSRLRWIAHGVVTPPET 48
>gi|15838756|ref|NP_299444.1| transcription-related protein [Xylella fastidiosa 9a5c]
gi|9107302|gb|AAF84964.1|AE004030_10 transcription-related protein [Xylella fastidiosa 9a5c]
Length = 772
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALE 58
++DL+ + I ID G R G +AI D + P R++ ++
Sbjct: 316 NLKDLLLAAPAGPRIVLGIDPGI-RTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHT 374
Query: 59 LLSFITTENIAAFIIGL 75
L + T +I IG
Sbjct: 375 LKTLCTQHHITLIAIGN 391
>gi|28199110|ref|NP_779424.1| transcription-related protein [Xylella fastidiosa Temecula1]
gi|182681838|ref|YP_001829998.1| RNA-binding S1 domain-containing protein [Xylella fastidiosa M23]
gi|28057208|gb|AAO29073.1| transcription-related protein [Xylella fastidiosa Temecula1]
gi|182631948|gb|ACB92724.1| RNA binding S1 domain protein [Xylella fastidiosa M23]
gi|307578087|gb|ADN62056.1| RNA-binding S1 domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 772
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALE 58
++DL+ + I ID G R G +AI D + P R++ ++
Sbjct: 316 NLKDLLLAAPAGPRIVLGIDPGI-RTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHT 374
Query: 59 LLSFITTENIAAFIIGL 75
L + T ++ IG
Sbjct: 375 LKTLCTQHHVTLIAIGN 391
>gi|329766011|ref|ZP_08257572.1| hypothetical protein Nlim_1358 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137466|gb|EGG41741.1| hypothetical protein Nlim_1358 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 186
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 20/129 (15%)
Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
I ID G R G++I F + L ++ + ++
Sbjct: 64 IIGIDPGQ-RTGISI----FYFGREIESSFISSTEELVLHIIEVLGGLRAKRKVV----- 113
Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDS 138
G + + F DER T+ + + + K D
Sbjct: 114 -KIGNGNMKIAKEIVTMLNLTFCSSFELEFVDERKTS---------LKIKNFNQRGKRDM 163
Query: 139 IAAALILQE 147
++A ILQ
Sbjct: 164 LSAKYILQR 172
>gi|170730495|ref|YP_001775928.1| transcription-related protein [Xylella fastidiosa M12]
gi|167965288|gb|ACA12298.1| transcription-related protein [Xylella fastidiosa M12]
Length = 772
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALE 58
++DL+ + I ID G R G +AI D + P R++ ++
Sbjct: 316 NLKDLLLAAPAGPRIVLGIDPGI-RTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHT 374
Query: 59 LLSFITTENIAAFIIGL 75
L + T ++ IG
Sbjct: 375 LKTLCTQHHVTLIAIGN 391
>gi|71276295|ref|ZP_00652573.1| RNA binding S1 [Xylella fastidiosa Dixon]
gi|71900306|ref|ZP_00682442.1| RNA binding S1 [Xylella fastidiosa Ann-1]
gi|71162903|gb|EAO12627.1| RNA binding S1 [Xylella fastidiosa Dixon]
gi|71729954|gb|EAO32049.1| RNA binding S1 [Xylella fastidiosa Ann-1]
Length = 772
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALE 58
++DL+ + I ID G R G +AI D + P R++ ++
Sbjct: 316 NLKDLLLAAPAGPRIVLGIDPGI-RTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHT 374
Query: 59 LLSFITTENIAAFIIGL 75
L + T ++ IG
Sbjct: 375 LKTLCTQHHVTLIAIGN 391
>gi|71898476|ref|ZP_00680648.1| RNA binding S1 [Xylella fastidiosa Ann-1]
gi|71731789|gb|EAO33848.1| RNA binding S1 [Xylella fastidiosa Ann-1]
Length = 772
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRRFA---HPRPFLVRKKVTQTALE 58
++DL+ + I ID G R G +AI D + P R++ ++
Sbjct: 316 NLKDLLLAAPAGPRIVLGIDPGI-RTGCKIAIVDTTGKLIATETIYPHEPRREWDKSLHT 374
Query: 59 LLSFITTENIAAFIIGL 75
L + T ++ IG
Sbjct: 375 LKTLCTQHHVTLIAIGN 391
>gi|313839581|gb|EFS77295.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL086PA1]
Length = 284
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|313792610|gb|EFS40696.1| FGGY-family pentulose kinase [Propionibacterium acnes HL110PA1]
gi|315079118|gb|EFT51125.1| FGGY-family pentulose kinase [Propionibacterium acnes HL053PA2]
gi|327457454|gb|EGF04109.1| FGGY-family pentulose kinase [Propionibacterium acnes HL092PA1]
Length = 534
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|313771106|gb|EFS37072.1| FGGY-family pentulose kinase [Propionibacterium acnes HL074PA1]
gi|313832260|gb|EFS69974.1| FGGY-family pentulose kinase [Propionibacterium acnes HL007PA1]
gi|313832721|gb|EFS70435.1| FGGY-family pentulose kinase [Propionibacterium acnes HL056PA1]
gi|314975159|gb|EFT19254.1| FGGY-family pentulose kinase [Propionibacterium acnes HL053PA1]
gi|314977569|gb|EFT21664.1| FGGY-family pentulose kinase [Propionibacterium acnes HL045PA1]
gi|315096945|gb|EFT68921.1| FGGY-family pentulose kinase [Propionibacterium acnes HL038PA1]
gi|327332461|gb|EGE74196.1| sugar kinase, putative xylulose kinase [Propionibacterium acnes
HL096PA2]
gi|327446764|gb|EGE93418.1| FGGY-family pentulose kinase [Propionibacterium acnes HL043PA2]
gi|327448796|gb|EGE95450.1| FGGY-family pentulose kinase [Propionibacterium acnes HL043PA1]
gi|328759857|gb|EGF73447.1| sugar kinase, putative xylulose kinase [Propionibacterium acnes
HL099PA1]
Length = 534
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|313765066|gb|EFS36430.1| FGGY-family pentulose kinase [Propionibacterium acnes HL013PA1]
gi|313815684|gb|EFS53398.1| FGGY-family pentulose kinase [Propionibacterium acnes HL059PA1]
gi|313829147|gb|EFS66861.1| FGGY-family pentulose kinase [Propionibacterium acnes HL063PA2]
gi|314916174|gb|EFS80005.1| FGGY-family pentulose kinase [Propionibacterium acnes HL005PA4]
gi|314917437|gb|EFS81268.1| FGGY-family pentulose kinase [Propionibacterium acnes HL050PA1]
gi|314921776|gb|EFS85607.1| FGGY-family pentulose kinase [Propionibacterium acnes HL050PA3]
gi|314930956|gb|EFS94787.1| FGGY-family pentulose kinase [Propionibacterium acnes HL067PA1]
gi|314955373|gb|EFS99778.1| FGGY-family pentulose kinase [Propionibacterium acnes HL027PA1]
gi|314959454|gb|EFT03556.1| FGGY-family pentulose kinase [Propionibacterium acnes HL002PA1]
gi|314969123|gb|EFT13221.1| FGGY-family pentulose kinase [Propionibacterium acnes HL037PA1]
gi|315099382|gb|EFT71358.1| FGGY-family pentulose kinase [Propionibacterium acnes HL059PA2]
gi|315102274|gb|EFT74250.1| FGGY-family pentulose kinase [Propionibacterium acnes HL046PA1]
gi|315109725|gb|EFT81701.1| FGGY-family pentulose kinase [Propionibacterium acnes HL030PA2]
gi|327454214|gb|EGF00869.1| FGGY-family pentulose kinase [Propionibacterium acnes HL087PA3]
gi|327456272|gb|EGF02927.1| FGGY-family pentulose kinase [Propionibacterium acnes HL083PA2]
gi|328755971|gb|EGF69587.1| FGGY-family pentulose kinase [Propionibacterium acnes HL087PA1]
gi|328758934|gb|EGF72550.1| FGGY-family pentulose kinase [Propionibacterium acnes HL025PA2]
Length = 534
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|212276076|ref|NP_001130838.1| hypothetical protein LOC100191942 [Zea mays]
gi|194690244|gb|ACF79206.1| unknown [Zea mays]
Length = 309
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG IG+AI A R V +++ +
Sbjct: 187 VTDGSRILGLGDLGVHGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 244
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + + V F+ + R V F E + A ++L
Sbjct: 245 YLGLQEHRLEGD-EYVSVIDEFMEAVFTRWPNVIVQF--EDFQSKWAFRLL 292
>gi|50843756|ref|YP_056983.1| sugar kinase, putative xylulose kinase [Propionibacterium acnes
KPA171202]
gi|282853002|ref|ZP_06262339.1| FGGY-family pentulose kinase [Propionibacterium acnes J139]
gi|295131848|ref|YP_003582511.1| FGGY-family pentulose kinase [Propionibacterium acnes SK137]
gi|50841358|gb|AAT84025.1| sugar kinase, putative xylulose kinase [Propionibacterium acnes
KPA171202]
gi|282582455|gb|EFB87835.1| FGGY-family pentulose kinase [Propionibacterium acnes J139]
gi|291375757|gb|ADD99611.1| FGGY-family pentulose kinase [Propionibacterium acnes SK137]
gi|313811728|gb|EFS49442.1| FGGY-family pentulose kinase [Propionibacterium acnes HL083PA1]
gi|314922797|gb|EFS86628.1| FGGY-family pentulose kinase [Propionibacterium acnes HL001PA1]
gi|314965715|gb|EFT09814.1| FGGY-family pentulose kinase [Propionibacterium acnes HL082PA2]
gi|314983002|gb|EFT27094.1| FGGY-family pentulose kinase [Propionibacterium acnes HL110PA3]
gi|315091507|gb|EFT63483.1| FGGY-family pentulose kinase [Propionibacterium acnes HL110PA4]
gi|315094609|gb|EFT66585.1| FGGY-family pentulose kinase [Propionibacterium acnes HL060PA1]
gi|315107431|gb|EFT79407.1| FGGY-family pentulose kinase [Propionibacterium acnes HL030PA1]
gi|327328893|gb|EGE70653.1| sugar kinase, putative xylulose kinase [Propionibacterium acnes
HL103PA1]
Length = 534
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|15668331|ref|NP_247127.1| hypothetical protein MJ_0159 [Methanocaldococcus jannaschii DSM
2661]
gi|2495835|sp|Q57623|Y159_METJA RecName: Full=Uncharacterized protein MJ0159
gi|1590916|gb|AAB98143.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 542
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 2 SILLIEDLVKSLKPNQ-PIASIDLGTKRIGLAISDPGRRFA 41
+IL I++L + + +D+G ++G+A+ A
Sbjct: 240 TILEIDELKCIISYGTENVLGLDVGDDKVGVALIGGLTPIA 280
>gi|315081538|gb|EFT53514.1| FGGY-family pentulose kinase [Propionibacterium acnes HL078PA1]
Length = 534
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|289523639|ref|ZP_06440493.1| conserved hypothetical protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503331|gb|EFD24495.1| conserved hypothetical protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 157
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 14/135 (10%)
Query: 20 ASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNM 79
+D G +IG A D + +K + L E G +
Sbjct: 3 LGLDPGRDKIGFAFVDENGEL-LYSGIIPKKLFESFLIALSEGNWVELAPYGCEGDTSLL 61
Query: 80 NGSEGPRVHSTRAFVHNMID---RKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRI--- 133
V ++ R+ + + DE +T+ A+++ ++ + R
Sbjct: 62 VDKNVELVLLGGGTTSEELERGLRRRKIEYKVVDESFSTLQARKMYYRIHPPKGFRRLWP 121
Query: 134 -------QKVDSIAA 141
+ +D +AA
Sbjct: 122 LSLLVPGRDIDDLAA 136
>gi|289424610|ref|ZP_06426393.1| FGGY-family pentulose kinase [Propionibacterium acnes SK187]
gi|289155307|gb|EFD03989.1| FGGY-family pentulose kinase [Propionibacterium acnes SK187]
gi|313803146|gb|EFS44342.1| FGGY-family pentulose kinase [Propionibacterium acnes HL110PA2]
gi|314963915|gb|EFT08015.1| FGGY-family pentulose kinase [Propionibacterium acnes HL082PA1]
Length = 534
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|313814259|gb|EFS51973.1| FGGY-family pentulose kinase [Propionibacterium acnes HL025PA1]
Length = 534
Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|319408675|emb|CBI82330.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 156
Score = 34.5 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+Q I +DLGTK G AIS A ++ + L F
Sbjct: 5 SQTILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50
>gi|327334519|gb|EGE76230.1| sugar kinase, putative xylulose kinase [Propionibacterium acnes
HL097PA1]
Length = 520
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|313835215|gb|EFS72929.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL037PA2]
gi|314929187|gb|EFS93018.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL044PA1]
gi|314970862|gb|EFT14960.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL037PA3]
gi|328905752|gb|EGG25528.1| LOW QUALITY PROTEIN: FGGY-family pentulose kinase
[Propionibacterium sp. P08]
Length = 405
Score = 34.5 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLEGRPLTFAATPYKTTHPHPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAIMWMDVRPTEQAAR 115
>gi|114778276|ref|ZP_01453135.1| probable transcriptional accessory protein [Mariprofundus
ferrooxydans PV-1]
gi|114551378|gb|EAU53934.1| probable transcriptional accessory protein [Mariprofundus
ferrooxydans PV-1]
Length = 825
Score = 34.5 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 4 LLIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTAL 57
+ DL+ + + +D G R G +A+ D + A P + K+ +
Sbjct: 324 HNLRDLLLAAPAGPRTTMGLDPGL-RTGVKVAVVDATGKLLDTATIYPHVPAKRWDEAIA 382
Query: 58 ELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV 102
L ++ IG +E F + + +
Sbjct: 383 ALAVLADKHHVDLVAIGNGTGSRETEALVKELRERFAQLHLTQVM 427
>gi|308062201|gb|ADO04089.1| Holliday junction resolvase [Helicobacter pylori Cuz20]
gi|308063329|gb|ADO05216.1| Holliday junction resolvase [Helicobacter pylori Sat464]
Length = 157
Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIVSHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|188527278|ref|YP_001909965.1| Holliday junction resolvase [Helicobacter pylori Shi470]
gi|238691910|sp|B2USV3|RUVC_HELPS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|188143518|gb|ACD47935.1| Holliday junction resolvase [Helicobacter pylori Shi470]
Length = 157
Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIVSHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|330825776|ref|YP_004389079.1| Tex-like protein [Alicycliphilus denitrificans K601]
gi|329311148|gb|AEB85563.1| Tex-like protein [Alicycliphilus denitrificans K601]
Length = 794
Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 7/108 (6%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
L + IG ++ + + P
Sbjct: 382 LGRLCMKHGVQLIAIGNGTASRETDKLAAELIKLMQKQAPAQTGQAPI 429
>gi|160898815|ref|YP_001564397.1| RNA-binding S1 domain-containing protein [Delftia acidovorans
SPH-1]
gi|160364399|gb|ABX36012.1| RNA binding S1 domain protein [Delftia acidovorans SPH-1]
Length = 786
Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + Q + +D G R G +A+ D + P R+ +
Sbjct: 323 NLRDLLLAAPAGQRAVIGLDPGI-RTGVKVAVVDSTGKLVDTTTIYPHEPRRDWDGSLAV 381
Query: 59 LLSFITTENIAAFIIGL 75
L + I IG
Sbjct: 382 LARLVEKHQINLIAIGN 398
>gi|255325097|ref|ZP_05366203.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
tuberculostearicum SK141]
gi|255297662|gb|EET76973.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
tuberculostearicum SK141]
Length = 188
Score = 34.5 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 14/127 (11%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFA------HPRPFLVRKKVTQTALELLSFITTENIA 69
+ ID G R GL++ GR A K +T+ L L
Sbjct: 5 GMRVMGIDPGLTRCGLSVVQAGRGRAILPVSVGVVRTPSDKDLTERLLRLSVAAKEWMDD 64
Query: 70 A---FIIGLPLNMNGSEGPRVHSTRAFVHNMI-DRKVYVPFVFWDERLTTVSAQQILIDM 125
+ + G + + ++ + +P T ++ +
Sbjct: 65 YSPDVVAIERVFERGQVSTVMQTAHVVGVLVLAAAERDIPVYM----YTPSEVKKAISGN 120
Query: 126 NVSRKKR 132
+ KK+
Sbjct: 121 GRADKKQ 127
>gi|297559813|ref|YP_003678787.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844261|gb|ADH66281.1| crossover junction endodeoxyribonuclease RuvC [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 185
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 18 PIASIDLGTKRIGL-----AISDPGRRF-AHPRPFLVRKKVTQTALELLSFITTE 66
+ ID G R G+ AI P A + + + I
Sbjct: 5 RVLGIDPGLTRCGVAAVEGAIGRPLTLLGADAVRTSPDTDLPHRLVGIERGIEEW 59
>gi|227485048|ref|ZP_03915364.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
gi|227236881|gb|EEI86896.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
Length = 297
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 10/125 (8%)
Query: 39 RFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMI 98
+ K T L +T N+ I + G R + N
Sbjct: 114 MIKRREELVEEKDKLLTYKNNLEILTKANVDIEKIKHLNYFDFRYGDVTKDGRFILKNNY 173
Query: 99 DRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSI----------AAALILQEV 148
+ + DE + + A LI+++ +R + VD I A I Q
Sbjct: 174 ENIPSLIIHLDDEAVKSADALNTLIELDNKTSQRRKSVDEIIENEKSESLRVANKIDQTF 233
Query: 149 LDRIS 153
+++S
Sbjct: 234 FEKLS 238
>gi|326316623|ref|YP_004234295.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373459|gb|ADX45728.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 788
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGL 75
L + + IG
Sbjct: 382 LARLVQKHGVQLVAIGN 398
>gi|217034487|ref|ZP_03439898.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
gi|216943028|gb|EEC22507.1| hypothetical protein HP9810_873g3 [Helicobacter pylori 98-10]
Length = 157
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|242050298|ref|XP_002462893.1| hypothetical protein SORBIDRAFT_02g033920 [Sorghum bicolor]
gi|241926270|gb|EER99414.1| hypothetical protein SORBIDRAFT_02g033920 [Sorghum bicolor]
Length = 616
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG IG+AI A R V +++ +
Sbjct: 190 VTDGSRILGLGDLGVHGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 247
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + + V F+ + R V F E + A ++L
Sbjct: 248 YLGLQEHRLEGD-EYVSVIDEFMEAVFTRWPNVIVQF--EDFQSKWAFRLL 295
>gi|223949481|gb|ACN28824.1| unknown [Zea mays]
gi|223949571|gb|ACN28869.1| unknown [Zea mays]
Length = 619
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG IG+AI A R V +++ +
Sbjct: 187 VTDGSRILGLGDLGVHGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 244
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + + V F+ + R V F E + A ++L
Sbjct: 245 YLGLQEHRLEGD-EYVSVIDEFMEAVFTRWPNVIVQF--EDFQSKWAFRLL 292
>gi|313203329|ref|YP_004041986.1| pullulanase, type II [Paludibacter propionicigenes WB4]
gi|312442645|gb|ADQ79001.1| pullulanase, type I [Paludibacter propionicigenes WB4]
Length = 658
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Query: 35 DPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFV 94
D A + ++ + + G ++ G +
Sbjct: 297 DSTWSNASGCGNETASERGMMRKFIVESVVYWATEYHVDGFRFDLMGIHDIETMNAVRTA 356
Query: 95 HNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIA 140
+ ID+ + E T +A L + + KK +K+D+IA
Sbjct: 357 LDKIDKT----IFMYGEGWT--AANSPLEEAKRAVKKNAKKLDNIA 396
>gi|317180639|dbj|BAJ58425.1| Holliday junction resolvase [Helicobacter pylori F32]
gi|317182185|dbj|BAJ59969.1| Holliday junction resolvase [Helicobacter pylori F57]
Length = 157
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|297380078|gb|ADI34965.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter
pylori v225d]
Length = 157
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|261839310|gb|ACX99075.1| Holliday junction resolvase [Helicobacter pylori 52]
Length = 157
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|217076628|ref|YP_002334344.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B]
gi|217036481|gb|ACJ75003.1| S1 RNA binding domain protein [Thermosipho africanus TCF52B]
Length = 675
Score = 34.1 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 15 PNQPIASIDLGTKR-IGLAISDPGRRF---AHPRPFLVRKKVTQTALELLSFITTENIAA 70
++ I +ID G K +A+ D +F A P + + ++ I ++
Sbjct: 299 KDKRILAIDPGNKTGCKIAVLDENGKFLEKAIIFPTPPHNDIENSEKIVIELIKKFDLNL 358
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKV-YVPFVFWDERLTTV 116
+IG G T+ F+ N I + V ++F +E +V
Sbjct: 359 IVIGN--------GTASRETQKFIVNTIKKFNLDVKYIFANEAGASV 397
>gi|299530284|ref|ZP_07043709.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
S44]
gi|298721655|gb|EFI62587.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
S44]
Length = 793
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + Q + +D G R G +A+ D + P R+ +
Sbjct: 323 NLRDLLLAAPAGQRAVIGLDPGI-RTGVKVAVVDSTGKLVDTTTIYPHEPRRDWDGSLAV 381
Query: 59 LLSFITTENIAAFIIGL 75
L + +I IG
Sbjct: 382 LARLVEKHDINLIAIGN 398
>gi|289427500|ref|ZP_06429213.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
J165]
gi|289159430|gb|EFD07621.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
J165]
gi|313806812|gb|EFS45310.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL087PA2]
gi|313817602|gb|EFS55316.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL046PA2]
gi|313821572|gb|EFS59286.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL036PA1]
gi|313824484|gb|EFS62198.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL036PA2]
gi|313826829|gb|EFS64543.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL063PA1]
gi|314926235|gb|EFS90066.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL036PA3]
gi|314961621|gb|EFT05722.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL002PA2]
gi|314979963|gb|EFT24057.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL072PA2]
gi|314987154|gb|EFT31246.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL005PA2]
gi|314990646|gb|EFT34737.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL005PA3]
gi|315083037|gb|EFT55013.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL027PA2]
gi|315086571|gb|EFT58547.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL002PA3]
gi|315087975|gb|EFT59951.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL072PA1]
gi|327334084|gb|EGE75799.1| sugar kinase, putative xylulose kinase [Propionibacterium acnes
HL096PA3]
gi|327444511|gb|EGE91165.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL013PA2]
gi|328758017|gb|EGF71633.1| carbohydrate kinase, FGGY family protein [Propionibacterium acnes
HL020PA1]
Length = 137
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 13 LKPNQPIASIDLGTKRIGLAISD----PGRRFAHPRPFLVRKKVT---QTALELLSFITT 65
L + ID GT+ +AI D P A P + + +
Sbjct: 2 LNNGPYLLGIDYGTESCRVAIFDLAGRPLTFAATPYKTTHPRPGWAEQDPEEWWKALQAS 61
Query: 66 ENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQ 119
+ A G+ + + ++ ++ D R T +A+
Sbjct: 62 CHRAIAAAGISPAAIAGISYDATTLTMVAMDERGNELRPAMMWMDVRATEQAAR 115
>gi|221068177|ref|ZP_03544282.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
gi|220713200|gb|EED68568.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
Length = 793
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + Q + +D G R G +A+ D + P R+ +
Sbjct: 323 NLRDLLLAAPAGQRAVIGLDPGI-RTGVKVAVVDSTGKLVDTTTIYPHEPRRDWDGSLAV 381
Query: 59 LLSFITTENIAAFIIGL 75
L + +I IG
Sbjct: 382 LARLVEKHDINLIAIGN 398
>gi|261837897|gb|ACX97663.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori 51]
Length = 157
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|126695609|ref|YP_001090495.1| hypothetical protein P9301_02711 [Prochlorococcus marinus str. MIT
9301]
gi|126542652|gb|ABO16894.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9301]
Length = 145
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 26/143 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +ID G + GL +++ + + L + + + I+ E+I IIG
Sbjct: 1 MARVVTIDPGKSKCGLVLAEISEKKVYKAIILKSELLENYL---RNLISAEDIEQIIIG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKR--- 132
NG+ + F + ++E+ TT A+ ++ +
Sbjct: 57 ----NGTTSREIREKLHFFKK--------EIITFEEKNTTYRAKARYFELFPISGLKFLI 104
Query: 133 -------IQKVDSIAAALILQEV 148
+ +D+I+A +IL++
Sbjct: 105 PREIFILNKNLDAISALIILEDY 127
>gi|332530544|ref|ZP_08406482.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624]
gi|332039990|gb|EGI76378.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624]
Length = 796
Score = 34.1 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P R+ +
Sbjct: 334 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDATGKLVDTATVYPHEPRRDWDGSLFT 392
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVH 95
L + + IG ++ +
Sbjct: 393 LGKLVEKHGVNLIAIGNGTASRETDKLAADLIKMAAK 429
>gi|317178765|dbj|BAJ56553.1| Holliday junction resolvase [Helicobacter pylori F30]
Length = 157
Score = 34.1 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|120612074|ref|YP_971752.1| RNA-binding S1 domain-containing protein [Acidovorax citrulli
AAC00-1]
gi|120590538|gb|ABM33978.1| RNA binding S1 domain protein [Acidovorax citrulli AAC00-1]
Length = 788
Score = 34.1 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHT 381
Query: 59 LLSFITTENIAAFIIGL 75
L + + IG
Sbjct: 382 LARLVQKHGVQLVAIGN 398
>gi|317014285|gb|ADU81721.1| Holliday junction resolvase [Helicobacter pylori Gambia94/24]
Length = 157
Score = 34.1 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHVSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|319762303|ref|YP_004126240.1| tex-like protein [Alicycliphilus denitrificans BC]
gi|317116864|gb|ADU99352.1| Tex-like protein [Alicycliphilus denitrificans BC]
Length = 794
Score = 34.1 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 7/108 (6%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + + +D G R G +A+ D + A P R+ +
Sbjct: 323 NLRDLLLAAPAGPKAVMGLDPGI-RTGVKVAVVDATGKLVETATVYPHEPRRDWDGSLAV 381
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPF 106
L + IG ++ + + P
Sbjct: 382 LGRLCMKHGVQLIAIGNGTASRETDKLAAELIKLMQKQAPAQAGQAPI 429
>gi|307637566|gb|ADN80016.1| Crossover junction endo deoxyribonuclease [Helicobacter pylori
908]
gi|325996157|gb|ADZ51562.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori
2018]
gi|325997753|gb|ADZ49961.1| Crossover junction endodeoxyribonuclease [Helicobacter pylori
2017]
Length = 157
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|217033157|ref|ZP_03438615.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
gi|298736584|ref|YP_003729110.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter
pylori B8]
gi|216945117|gb|EEC23817.1| hypothetical protein HPB128_183g4 [Helicobacter pylori B128]
gi|298355774|emb|CBI66646.1| crossover junction endodeoxyribonuclease RuvC [Helicobacter
pylori B8]
Length = 157
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|207093361|ref|ZP_03241148.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_AG0C1]
gi|207108708|ref|ZP_03242870.1| Holliday junction resolvase [Helicobacter pylori HPKX_438_CA4C1]
Length = 157
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|317009115|gb|ADU79695.1| Holliday junction resolvase [Helicobacter pylori India7]
Length = 157
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|313667339|ref|YP_004049740.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM
14977]
gi|313153970|gb|ADR37820.1| hypothetical protein Ocepr_2372 [Oceanithermus profundus DSM
14977]
Length = 172
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 19 IASIDLGTKRIGLA 32
I ID G+K+IGLA
Sbjct: 2 ILGIDPGSKKIGLA 15
>gi|148907636|gb|ABR16947.1| unknown [Picea sitchensis]
Length = 601
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG + IG+AI A R V ++ +
Sbjct: 169 VTDGSRILGLGDLGVQGIGIAIGKLDLYVAASGINPQR--VLPVMIDCGTNNEKLLGDPL 226
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GLP+ E V F+ + R V F E + A ++L
Sbjct: 227 YLGLPIRRLDGE-EYVSVIDEFMEAVFARWPNVIVQF--EDFQSKWAFKLL 274
>gi|15611878|ref|NP_223529.1| Holliday junction resolvase [Helicobacter pylori J99]
gi|6685959|sp|Q9ZKX3|RUVC_HELPJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|4155374|gb|AAD06385.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori
J99]
Length = 157
Score = 34.1 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|315586457|gb|ADU40838.1| crossover junction endoribonuclease subunit C [Helicobacter
pylori 35A]
Length = 160
Score = 34.1 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|172040614|ref|YP_001800328.1| Holliday junction resolvase [Corynebacterium urealyticum DSM
7109]
gi|171851918|emb|CAQ04894.1| ruvC [Corynebacterium urealyticum DSM 7109]
Length = 202
Score = 34.1 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFA 41
+ + ID G R GL++ G+ A
Sbjct: 38 GKRVMGIDPGLTRCGLSVVQAGQGRA 63
>gi|317401789|gb|EFV82404.1| tex protein [Achromobacter xylosoxidans C54]
Length = 791
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKAVLGLDPGI-RTGCKVAVIDRTGKVVDTTTVYPFEPRRDREGTINT 389
Query: 59 LLSFITTENIAAFIIGL 75
L + + + IG
Sbjct: 390 LAALVARHKVDLIAIGN 406
>gi|210135070|ref|YP_002301509.1| Holliday junction resolvase [Helicobacter pylori P12]
gi|226698756|sp|B6JMA1|RUVC_HELP2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|210133038|gb|ACJ08029.1| holliday junction endodeoxyribonuclease [Helicobacter pylori P12]
Length = 157
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|163867791|ref|YP_001608995.1| hypothetical protein Btr_0550 [Bartonella tribocorum CIP 105476]
gi|161017442|emb|CAK01000.1| phage-related conserved hypothetical protein [Bartonella
tribocorum CIP 105476]
Length = 159
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 13 LKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
+ Q I +DLGTK G A+ D ++ + L F
Sbjct: 2 ITHAQTILCLDLGTKT-GWALCDADGFITSDTEHFQSRRFEGGGMRYLRF 50
>gi|15645496|ref|NP_207671.1| Holliday junction resolvase [Helicobacter pylori 26695]
gi|108563285|ref|YP_627601.1| Holliday junction resolvase [Helicobacter pylori HPAG1]
gi|254779156|ref|YP_003057261.1| Holliday junction resolvase [Helicobacter pylori B38]
gi|3914941|sp|O25544|RUVC_HELPY RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|123073769|sp|Q1CSZ5|RUVC_HELPH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|2314012|gb|AAD07925.1| Holliday junction endodeoxyribonuclease (ruvC) [Helicobacter
pylori 26695]
gi|107837058|gb|ABF84927.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori
HPAG1]
gi|254001067|emb|CAX29014.1| Crossover junction endodeoxyribonuclease RuvC (Holliday junction
nuclease RuvC) (Holliday juction resolvase RuvC)
[Helicobacter pylori B38]
Length = 157
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|295107401|emb|CBL04944.1| Transcriptional accessory protein [Gordonibacter pamelaeae
7-10-1-b]
Length = 718
Score = 34.1 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 15 PNQPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALELLSFITTENIA 69
+ +ID G R G +A+ D + F P R +V +T +L ++
Sbjct: 314 RGARVIAIDPGY-RTGCKVAVLDEYGKLLDFTTVYPTPPRSEVRKTQDKLAEYVERHRAN 372
Query: 70 AFIIGL 75
+IG
Sbjct: 373 TIVIGN 378
>gi|208434786|ref|YP_002266452.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
gi|308184661|ref|YP_003928794.1| Holliday junction resolvase [Helicobacter pylori SJM180]
gi|226698757|sp|B5Z7N7|RUVC_HELPG RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName:
Full=Holliday junction resolvase ruvC
gi|208432715|gb|ACI27586.1| Holliday junction endodeoxyribonuclease [Helicobacter pylori G27]
gi|308060581|gb|ADO02477.1| Holliday junction resolvase [Helicobacter pylori SJM180]
gi|317012682|gb|ADU83290.1| Holliday junction resolvase [Helicobacter pylori Lithuania75]
Length = 157
Score = 34.1 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|302876816|ref|YP_003845449.1| Carbohydrate kinase, FGGY-like [Clostridium cellulovorans 743B]
gi|307687500|ref|ZP_07629946.1| Carbohydrate kinase, FGGY-like protein [Clostridium cellulovorans
743B]
gi|302579673|gb|ADL53685.1| Carbohydrate kinase, FGGY-like [Clostridium cellulovorans 743B]
Length = 535
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 1 MSILLIEDLVKSLKPNQPIASIDLGTKRI-GLAISDPGRRFAHPRPFLVRKKVTQTA 56
MSI I ++ S+ + + I+LG+ RI + I + A +
Sbjct: 1 MSI-SINNIKDSIVNGKTVLGIELGSTRIKAVLIGEDNTPIASGSHEWENSYINNIW 56
>gi|317177295|dbj|BAJ55084.1| Holliday junction resolvase [Helicobacter pylori F16]
Length = 160
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 1 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 53
>gi|255571113|ref|XP_002526507.1| malic enzyme, putative [Ricinus communis]
gi|223534182|gb|EEF35898.1| malic enzyme, putative [Ricinus communis]
Length = 626
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG + IG+AI A R V +++ +
Sbjct: 194 VTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 251
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + + V F+ + R V F E + A ++L
Sbjct: 252 YLGLQEHRLDGD-EYVAVIDEFMEAVFTRWPNVIVQF--EDFQSKWAFKLL 299
>gi|163856154|ref|YP_001630452.1| transcription accessory protein [Bordetella petrii DSM 12804]
gi|163259882|emb|CAP42183.1| transcription accessory protein [Bordetella petrii]
Length = 791
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + A PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKAVLGLDPGI-RTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIAT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93
L + + IG SE F
Sbjct: 390 LAALAARHQVELIAIGNGTASRESEKLVADMMSQF 424
>gi|332673319|gb|AEE70136.1| crossover junction endoribonuclease subunit C [Helicobacter
pylori 83]
Length = 168
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 17 QPIASIDLGTKRIGLAI----SDPGRRFAHPRPFLVRKKVTQTALELLSFITT 65
I ID G+++ G AI S+ + ++ + L+L+ +
Sbjct: 9 MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDC 61
>gi|225453250|ref|XP_002265765.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297734678|emb|CBI16729.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG + IG+AI A R V +++ +
Sbjct: 193 VTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 250
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + + + F+ + R +V F E + A ++L
Sbjct: 251 YLGLQEHRLDGD-EYLAVIDEFMEAVFTRWPHVIVQF--EDFQSKWAFKLL 298
>gi|294811000|ref|ZP_06769643.1| Alpha/beta hydrolase [Streptomyces clavuligerus ATCC 27064]
gi|326439658|ref|ZP_08214392.1| putative hydrolase [Streptomyces clavuligerus ATCC 27064]
gi|294323599|gb|EFG05242.1| Alpha/beta hydrolase [Streptomyces clavuligerus ATCC 27064]
Length = 435
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+ +G G R F + P W ERL+ V A+ ++I
Sbjct: 342 TWHEDGEPGYDW---RMFARIDAELNDPDP--LWTERLSAVEARTLVIGGGP-----RSP 391
Query: 136 VDS 138
+D
Sbjct: 392 IDQ 394
>gi|332283688|ref|YP_004415599.1| transcription accessory protein [Pusillimonas sp. T7-7]
gi|330427641|gb|AEC18975.1| transcription accessory protein [Pusillimonas sp. T7-7]
Length = 804
Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A D + + PF R+ +
Sbjct: 345 NLKDLLLAAPAGPKTVLGLDPGI-RTGVKVAAIDATGKVLATSTVYPFEPRRDREGSINT 403
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAF 93
L + IT I IG +E F
Sbjct: 404 LAALITKHKIELVAIGNGTASRETEKLVTDMQEKF 438
>gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4]
Length = 757
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 20/126 (15%)
Query: 16 NQPIASIDLGTKRIG--LAISDPGRRFAHPRPFLVRK---KVTQTALELLSFITTENIAA 70
++ + ID G R G LA D RF V ELL I +
Sbjct: 323 SKRVLGIDPGL-RTGSKLAAVDETGRFLSHCTIYPHTGSSNVEPAKRELLRIIDSNRCEI 381
Query: 71 FIIGLPLNMNGSEGPRVHSTRAFVHNMI-DRKVYVPFVFWDER----LT-TVSAQQILID 124
+G G F + + + +P V +E + + A++ +
Sbjct: 382 IAVGN--------GTAGREMELFARQTLTEAGLRLPVVVVNEAGASIYSASDIAREEFPE 433
Query: 125 MNVSRK 130
++++ +
Sbjct: 434 LDLTVR 439
>gi|78211819|ref|YP_380598.1| hypothetical protein Syncc9605_0267 [Synechococcus sp. CC9605]
gi|78196278|gb|ABB34043.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 148
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 27/144 (18%)
Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGL 75
+ +A +D G + GL ++D L + V + + + +IG
Sbjct: 1 MKRVAVLDPGRCKCGLVLADLQLGLVREGYVLAPEAVEPWLEQWNQ---DQALDRILIG- 56
Query: 76 PLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
+G+ + + E+ TT+ A+Q + +R R
Sbjct: 57 ----DGTGSR---------AWIKRLERLCHLTLVPEQGTTLRARQRYWTLWPARGWRRML 103
Query: 136 ----------VDSIAAALILQEVL 149
+D++AA ++L+E L
Sbjct: 104 PAGLRIPPVDLDAVAALVMLEEHL 127
>gi|311104858|ref|YP_003977711.1| protein tex [Achromobacter xylosoxidans A8]
gi|310759547|gb|ADP14996.1| protein tex [Achromobacter xylosoxidans A8]
Length = 791
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 5 LIEDLVKSLKPN-QPIASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
++DL+ + + + +D G R G +A+ D + PF R+ T
Sbjct: 331 NLKDLLLAAPAGPKAVLGLDPGI-RTGCKVAVIDQTGKVVDTTTVYPFEPRRDREGTINT 389
Query: 59 LLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFW 109
L + + + IG G + V +M++R +
Sbjct: 390 LAALVARHKVDLIAIGN--------GTASRESEKLVGDMMERFPNLKVTRV 432
>gi|319408868|emb|CBI82525.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 155
Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
I +DLGTK G AIS A ++ + L F
Sbjct: 7 TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50
>gi|86747949|ref|YP_484445.1| NAD(P)H dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
gi|86570977|gb|ABD05534.1| NAD(P)H dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
Length = 266
Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 110 DERLTTVSAQQILIDMNVSRKKRIQKVDSI--AAALILQ 146
DERL T +A + D + ++D + A LILQ
Sbjct: 59 DERLLTSAASKASFDAGELTQDVRAEIDKLLWADVLILQ 97
>gi|121594077|ref|YP_985973.1| RNA-binding S1 domain-containing protein [Acidovorax sp. JS42]
gi|120606157|gb|ABM41897.1| RNA binding S1 domain protein [Acidovorax sp. JS42]
Length = 798
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P R+ +
Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388
Query: 59 LLSFITTENIAAFIIGL 75
L + IG
Sbjct: 389 LGRLCMKHGVQLIAIGN 405
>gi|319408082|emb|CBI81735.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 155
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSF 62
I +DLGTK G AIS A ++ + L F
Sbjct: 7 TILCLDLGTKT-GWAISSEDGTIASGTVNFSTRRFEGGGMRYLRF 50
>gi|222111189|ref|YP_002553453.1| resolvase rnase h domain-containing protein [Acidovorax ebreus
TPSY]
gi|221730633|gb|ACM33453.1| Resolvase RNase H domain protein [Acidovorax ebreus TPSY]
Length = 798
Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQP-IASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P R+ +
Sbjct: 330 NLRDLLLAAPAGPRAVMGLDPGI-RTGVKVAVVDRTGKLVETATVYPHEPRRDWDGSLAT 388
Query: 59 LLSFITTENIAAFIIGL 75
L + IG
Sbjct: 389 LGRLCMKHGVQLIAIGN 405
>gi|121608029|ref|YP_995836.1| RNA-binding S1 domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552669|gb|ABM56818.1| RNA binding S1 domain protein [Verminephrobacter eiseniae EF01-2]
Length = 794
Score = 33.3 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 5 LIEDLVKSLKPNQPI-ASIDLGTKRIG--LAISDPGRR---FAHPRPFLVRKKVTQTALE 58
+ DL+ + + +D G R G +A+ D + A P R+
Sbjct: 325 NLRDLLLAAPAGPRVVMGLDPGI-RTGVKVAVVDTTGKLVETATVYPHEPRRDWDGALRT 383
Query: 59 LLSFITTENIAAFIIGL 75
L + ++ IG
Sbjct: 384 LARLAEKQGVSLIAIGN 400
>gi|224067419|ref|XP_002302483.1| predicted protein [Populus trichocarpa]
gi|222844209|gb|EEE81756.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 33.3 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 13 LKPNQPIASI-DLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAF 71
+ I + DLG + IG+AI A R V +++ +
Sbjct: 195 VTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQR--VLPVMIDVGTNNEKLLKDPL 252
Query: 72 IIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQIL 122
+GL + + + F+ + R +V F E + A ++L
Sbjct: 253 YLGLQEHRLDGD-EYIAVIDEFMEAVFTRWPHVIVQF--EDFQSKWAFKLL 300
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.152 0.468
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,714,094,713
Number of Sequences: 14124377
Number of extensions: 79166732
Number of successful extensions: 230074
Number of sequences better than 10.0: 2187
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 225533
Number of HSP's gapped (non-prelim): 2201
length of query: 160
length of database: 4,842,793,630
effective HSP length: 122
effective length of query: 38
effective length of database: 3,119,619,636
effective search space: 118545546168
effective search space used: 118545546168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 76 (33.7 bits)