RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] (160 letters) >gnl|CDD|146342 pfam03652, UPF0081, Uncharacterized protein family (UPF0081). Length = 134 Score = 151 bits (384), Expect = 9e-38 Identities = 60/136 (44%), Positives = 78/136 (57%), Gaps = 3/136 (2%) Query: 17 QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76 I +D+GTKRIG+AISDP A P + RK EL I ++GLP Sbjct: 1 GRILGLDVGTKRIGVAISDPLGILASPLETIERKNGKPDLEELAELIKEWQPDGIVVGLP 60 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135 LNM+GSEG + R F + +K + +P DERLTTV A++IL + +SRKKR + Sbjct: 61 LNMDGSEGEQTKRVRKFARRL--KKRFGLPVELVDERLTTVEAERILREAGLSRKKRKEV 118 Query: 136 VDSIAAALILQEVLDR 151 VDSIAA +ILQ LD Sbjct: 119 VDSIAAVIILQSYLDS 134 >gnl|CDD|31158 COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]. Length = 141 Score = 134 bits (339), Expect = 1e-32 Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 2/141 (1%) Query: 16 NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIG 74 I ++D+GTKRIG+A+SD A P + RK LL + + ++G Sbjct: 1 GMRILALDVGTKRIGVAVSDILGSLASPLETIKRKNGKPQDFNALLKLVKEYQVDTVVVG 60 Query: 75 LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134 LPLNM+G+EGPR R F + ++ +P V WDERL+TV A+++LI+ VSRKKR Sbjct: 61 LPLNMDGTEGPRAELARKFA-ERLKKRFNLPVVLWDERLSTVEAERMLIEAGVSRKKRKG 119 Query: 135 KVDSIAAALILQEVLDRISFL 155 +DS+AA LIL+ LDR Sbjct: 120 VIDSLAAVLILESYLDRNHAK 140 >gnl|CDD|147501 pfam05349, GATA-N, GATA-type transcription activator, N-terminal. GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators. Length = 177 Score = 26.7 bits (59), Expect = 3.1 Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 74 GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105 L L N + H + F+H+ VYVP Sbjct: 4 SLALAANHGQAAYDHDSGGFLHSAASSPVYVP 35 >gnl|CDD|36449 KOG1235, KOG1235, KOG1235, Predicted unusual protein kinase [General function prediction only]. Length = 538 Score = 25.7 bits (56), Expect = 5.6 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%) Query: 91 RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI-LQEVL 149 F + V VP V+WD +S +++L M +I +D+I I ++L Sbjct: 253 ENFKDFSLLTYVLVPKVYWD-----LSTKRVLT-MEYVDGIKINDLDAIDKRGISPHDIL 306 Query: 150 DRIS 153 +++ Sbjct: 307 NKLV 310 >gnl|CDD|31265 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]. Length = 456 Score = 24.8 bits (54), Expect = 9.9 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Query: 51 KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103 +V + A EL+ T+NIA FI+G GPRV + +M+D +Y Sbjct: 194 QVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRV------LEHMVDTVLY 240 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.138 0.385 Gapped Lambda K H 0.267 0.0635 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,846,196 Number of extensions: 91194 Number of successful extensions: 196 Number of sequences better than 10.0: 1 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 15 Length of query: 160 Length of database: 6,263,737 Length adjustment: 86 Effective length of query: 74 Effective length of database: 4,405,363 Effective search space: 325996862 Effective search space used: 325996862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.4 bits)