RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase
YqgF [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)



>gnl|CDD|146342 pfam03652, UPF0081, Uncharacterized protein family (UPF0081). 
          Length = 134

 Score =  151 bits (384), Expect = 9e-38
 Identities = 60/136 (44%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 17  QPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLP 76
             I  +D+GTKRIG+AISDP    A P   + RK       EL   I        ++GLP
Sbjct: 1   GRILGLDVGTKRIGVAISDPLGILASPLETIERKNGKPDLEELAELIKEWQPDGIVVGLP 60

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVY-VPFVFWDERLTTVSAQQILIDMNVSRKKRIQK 135
           LNM+GSEG +    R F   +  +K + +P    DERLTTV A++IL +  +SRKKR + 
Sbjct: 61  LNMDGSEGEQTKRVRKFARRL--KKRFGLPVELVDERLTTVEAERILREAGLSRKKRKEV 118

Query: 136 VDSIAAALILQEVLDR 151
           VDSIAA +ILQ  LD 
Sbjct: 119 VDSIAAVIILQSYLDS 134


>gnl|CDD|31158 COG0816, COG0816, Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) [DNA replication, recombination, and
           repair].
          Length = 141

 Score =  134 bits (339), Expect = 1e-32
 Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 2/141 (1%)

Query: 16  NQPIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALE-LLSFITTENIAAFIIG 74
              I ++D+GTKRIG+A+SD     A P   + RK         LL  +    +   ++G
Sbjct: 1   GMRILALDVGTKRIGVAVSDILGSLASPLETIKRKNGKPQDFNALLKLVKEYQVDTVVVG 60

Query: 75  LPLNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQ 134
           LPLNM+G+EGPR    R F    + ++  +P V WDERL+TV A+++LI+  VSRKKR  
Sbjct: 61  LPLNMDGTEGPRAELARKFA-ERLKKRFNLPVVLWDERLSTVEAERMLIEAGVSRKKRKG 119

Query: 135 KVDSIAAALILQEVLDRISFL 155
            +DS+AA LIL+  LDR    
Sbjct: 120 VIDSLAAVLILESYLDRNHAK 140


>gnl|CDD|147501 pfam05349, GATA-N, GATA-type transcription activator, N-terminal.
           GATA transcription factors mediate cell differentiation
           in a diverse range of tissues. Mutation are often
           associated with certain congenital human disorders. The
           six classical vertebrate GATA proteins, GATA-1 to
           GATA-6, are highly homologous and have two tandem zinc
           fingers. The classical GATA transcription factors
           function transcription activators. In lower metazoans
           GATA proteins carry a single canonical zinc finger. This
           family represents the N-terminal domain of the family of
           GATA transcription activators.
          Length = 177

 Score = 26.7 bits (59), Expect = 3.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 74  GLPLNMNGSEGPRVHSTRAFVHNMIDRKVYVP 105
            L L  N  +    H +  F+H+     VYVP
Sbjct: 4   SLALAANHGQAAYDHDSGGFLHSAASSPVYVP 35


>gnl|CDD|36449 KOG1235, KOG1235, KOG1235, Predicted unusual protein kinase
           [General function prediction only].
          Length = 538

 Score = 25.7 bits (56), Expect = 5.6
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 91  RAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVDSIAAALI-LQEVL 149
             F    +   V VP V+WD     +S +++L  M      +I  +D+I    I   ++L
Sbjct: 253 ENFKDFSLLTYVLVPKVYWD-----LSTKRVLT-MEYVDGIKINDLDAIDKRGISPHDIL 306

Query: 150 DRIS 153
           +++ 
Sbjct: 307 NKLV 310


>gnl|CDD|31265 COG1066, Sms, Predicted ATP-dependent serine protease
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 456

 Score = 24.8 bits (54), Expect = 9.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 51  KVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHSTRAFVHNMIDRKVY 103
           +V + A EL+    T+NIA FI+G         GPRV      + +M+D  +Y
Sbjct: 194 QVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRV------LEHMVDTVLY 240


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.138    0.385 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,846,196
Number of extensions: 91194
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 15
Length of query: 160
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,405,363
Effective search space: 325996862
Effective search space used: 325996862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)