RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus str. psy62] (160 letters) >d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Length = 138 Score = 119 bits (300), Expect = 1e-28 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 18 PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77 + + D GTK IG+A+ A P P + + T + + I+GLPL Sbjct: 4 TLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63 Query: 78 NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137 NM+G+E P R F + + R V DERL+TV A+ L + R KVD Sbjct: 64 NMDGTEQPLTARARKFANRIHGRF-GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVD 122 Query: 138 SIAAALILQEVLDR 151 S +A +IL+ +++ Sbjct: 123 SASAVIILESYMEQ 136 >d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Length = 140 Score = 110 bits (275), Expect = 7e-26 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76 I +DLGTK +G+A+SD A + + L I I ++G P Sbjct: 4 ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 63 Query: 77 LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136 NMNG+ GPR +++ F +++ VP V WDERLTT++A+++LI +VSR+KR + + Sbjct: 64 KNMNGTVGPRGEASQTF-AKVLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 122 Query: 137 DSIAAALILQEVLDRIS 153 D +AA +ILQ LD ++ Sbjct: 123 DKMAAVMILQGYLDSLN 139 >d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Length = 98 Score = 88.1 bits (218), Expect = 3e-19 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 19 IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78 + ++D+G RIGLA+ + G A R +LVRK + + LL F+ E + ++GLPL Sbjct: 3 VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62 Query: 79 MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115 + E + V + R V WDER TT Sbjct: 63 TDLKESAQAGKVLPLVEALRARG--VEVELWDERFTT 97 >d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Length = 177 Score = 25.4 bits (55), Expect = 2.7 Identities = 5/19 (26%), Positives = 9/19 (47%) Query: 93 FVHNMIDRKVYVPFVFWDE 111 F H++ID + W + Sbjct: 153 FSHHLIDDFRDPAYYTWRQ 171 >d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Length = 179 Score = 25.3 bits (55), Expect = 2.8 Identities = 6/23 (26%), Positives = 12/23 (52%) Query: 93 FVHNMIDRKVYVPFVFWDERLTT 115 F ++ID P+ + + R +T Sbjct: 153 FTQHLIDDYRITPYFYSEFRAST 175 >d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella oxytoca [TaxId: 571]} Length = 551 Score = 24.4 bits (53), Expect = 4.5 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156 L D NV R + + ++ A I+ EV+ ++ +E Sbjct: 91 LCDPNVKRSEIVPLTTAMTPAKIV-EVVSHMNVVE 124 >d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118 Score = 24.5 bits (53), Expect = 5.4 Identities = 7/37 (18%), Positives = 16/37 (43%) Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV 48 +L+ +P+ G K +G + + + P+ V Sbjct: 9 TLRKGKPLHWYLKGAKFLGEDWIEGYQLYFEYLPYAV 45 >d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 202 Score = 23.2 bits (49), Expect = 9.8 Identities = 2/22 (9%), Positives = 11/22 (50%) Query: 130 KKRIQKVDSIAAALILQEVLDR 151 ++ + + ++ L+ +E + Sbjct: 162 EEYKEPLKAVVKKLLEKETITC 183 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.138 0.385 Gapped Lambda K H 0.267 0.0560 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 556,665 Number of extensions: 24144 Number of successful extensions: 90 Number of sequences better than 10.0: 1 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 13 Length of query: 160 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 82 Effective length of database: 1,336,656 Effective search space: 109605792 Effective search space used: 109605792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 49 (23.0 bits)