RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780976|ref|YP_003065389.1| Holliday junction resolvase
YqgF [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)



>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia
           coli [TaxId: 562]}
          Length = 138

 Score =  119 bits (300), Expect = 1e-28
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 18  PIASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPL 77
            + + D GTK IG+A+       A P P +  +  T     +   +        I+GLPL
Sbjct: 4   TLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63

Query: 78  NMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKVD 137
           NM+G+E P     R F + +  R   V     DERL+TV A+  L +    R     KVD
Sbjct: 64  NMDGTEQPLTARARKFANRIHGRF-GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVD 122

Query: 138 SIAAALILQEVLDR 151
           S +A +IL+  +++
Sbjct: 123 SASAVIILESYMEQ 136


>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus
           subtilis [TaxId: 1423]}
          Length = 140

 Score =  110 bits (275), Expect = 7e-26
 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 3/137 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTAL--ELLSFITTENIAAFIIGLP 76
           I  +DLGTK +G+A+SD     A     +   +         L   I    I   ++G P
Sbjct: 4   ILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFP 63

Query: 77  LNMNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTTVSAQQILIDMNVSRKKRIQKV 136
            NMNG+ GPR  +++ F   +++    VP V WDERLTT++A+++LI  +VSR+KR + +
Sbjct: 64  KNMNGTVGPRGEASQTF-AKVLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVI 122

Query: 137 DSIAAALILQEVLDRIS 153
           D +AA +ILQ  LD ++
Sbjct: 123 DKMAAVMILQGYLDSLN 139


>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus
           thermophilus [TaxId: 274]}
          Length = 98

 Score = 88.1 bits (218), Expect = 3e-19
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 19  IASIDLGTKRIGLAISDPGRRFAHPRPFLVRKKVTQTALELLSFITTENIAAFIIGLPLN 78
           + ++D+G  RIGLA+ + G   A  R +LVRK + +    LL F+  E +   ++GLPL 
Sbjct: 3   VGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLR 62

Query: 79  MNGSEGPRVHSTRAFVHNMIDRKVYVPFVFWDERLTT 115
            +  E  +       V  +  R   V    WDER TT
Sbjct: 63  TDLKESAQAGKVLPLVEALRARG--VEVELWDERFTT 97


>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
           reductase subunit beta, DsrB {Desulfovibrio vulgaris
           [TaxId: 881]}
          Length = 177

 Score = 25.4 bits (55), Expect = 2.7
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 93  FVHNMIDRKVYVPFVFWDE 111
           F H++ID      +  W +
Sbjct: 153 FSHHLIDDFRDPAYYTWRQ 171


>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
           reductase subunit beta, DsrB {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 179

 Score = 25.3 bits (55), Expect = 2.8
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 93  FVHNMIDRKVYVPFVFWDERLTT 115
           F  ++ID     P+ + + R +T
Sbjct: 153 FTQHLIDDYRITPYFYSEFRAST 175


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 24.4 bits (53), Expect = 4.5
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 122 LIDMNVSRKKRIQKVDSIAAALILQEVLDRISFLE 156
           L D NV R + +    ++  A I+ EV+  ++ +E
Sbjct: 91  LCDPNVKRSEIVPLTTAMTPAKIV-EVVSHMNVVE 124


>d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 118

 Score = 24.5 bits (53), Expect = 5.4
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 12 SLKPNQPIASIDLGTKRIGLAISDPGRRFAHPRPFLV 48
          +L+  +P+     G K +G    +  + +    P+ V
Sbjct: 9  TLRKGKPLHWYLKGAKFLGEDWIEGYQLYFEYLPYAV 45


>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
           C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 202

 Score = 23.2 bits (49), Expect = 9.8
 Identities = 2/22 (9%), Positives = 11/22 (50%)

Query: 130 KKRIQKVDSIAAALILQEVLDR 151
           ++  + + ++   L+ +E +  
Sbjct: 162 EEYKEPLKAVVKKLLEKETITC 183


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.385 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 556,665
Number of extensions: 24144
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 13
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.0 bits)