Query gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln) amidotransferase subunit C protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 95
No_of_seqs 109 out of 1328
Neff 6.8
Searched_HMMs 23785
Date Wed Jun 1 00:12:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780977.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_C Aspartyl/glutamyl-tRNA( 100.0 5.1E-32 2.1E-36 194.4 9.4 95 1-95 1-96 (100)
2 3h0l_C Glutamyl-tRNA(Gln) amid 100.0 7.3E-31 3.1E-35 188.1 8.7 93 2-95 1-93 (94)
3 3kfu_G Glutamyl-tRNA(Gln) amid 100.0 1E-29 4.3E-34 181.8 8.7 89 1-95 4-92 (92)
4 3al0_C Glutamyl-tRNA(Gln) amid 97.8 1.9E-05 7.9E-10 49.5 4.8 92 2-93 4-95 (592)
5 2hep_A UPF0291 protein YNZC; S 21.5 41 0.0017 14.9 2.1 27 2-28 1-31 (85)
6 2jvd_A UPF0291 protein YNZC; s 20.4 48 0.002 14.5 2.6 26 2-27 1-30 (54)
7 1sbq_A H91_ORF164, 5,10-methen 20.1 49 0.0021 14.5 4.0 33 1-33 24-56 (189)
8 3eev_A Chloramphenicol acetylt 19.1 52 0.0022 14.4 3.7 42 2-43 165-208 (212)
9 3bhp_A UPF0291 protein YNZC; N 16.9 59 0.0025 14.1 5.4 28 2-29 1-32 (60)
10 1izm_A Hypothetical protein HI 15.1 65 0.0027 13.8 2.5 35 5-39 127-162 (184)
No 1
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=99.97 E-value=5.1e-32 Score=194.40 Aligned_cols=95 Identities=28% Similarity=0.396 Sum_probs=93.3
Q ss_pred CC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98-88899999999852778899999999999999999999952354789852112224466778736899998999840
Q gi|254780977|r 1 ML-IDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVESILSN 79 (95)
Q Consensus 1 M~-i~~~~i~~la~LarL~l~eee~~~~~~~l~~il~~v~~l~~vdt~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~n 79 (95)
|+ |++++|+|||+||||+|+++|++.++++|++||+||++|+++||+||+||+|+.+..++||+|++.++.+++++|+|
T Consensus 1 Ms~Is~e~i~~lA~LarL~l~eeE~~~~~~~l~~Il~~~~~L~~vdt~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~n 80 (100)
T 3ip4_C 1 MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKN 80 (100)
T ss_dssp --CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCCSCCCCCCBCSCCCCCCCHHHHHTT
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 99799999999999817899999999999999999999999853565788977443233667989868999899999874
Q ss_pred CHHHCCCEEECCEECC
Q ss_conf 8332075685350049
Q gi|254780977|r 80 APHVEKNFFVVPKAVE 95 (95)
Q Consensus 80 ap~~~~~yf~VPkViE 95 (95)
||++++|||+||||||
T Consensus 81 AP~~~~~~f~VPkVie 96 (100)
T 3ip4_C 81 AKETEDGQFKVPTIMN 96 (100)
T ss_dssp CSSEETTEEEEECC--
T ss_pred CCHHCCCEEEECCCCC
T ss_conf 8540199577162648
No 2
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=99.97 E-value=7.3e-31 Score=188.08 Aligned_cols=93 Identities=33% Similarity=0.542 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCH
Q ss_conf 88889999999985277889999999999999999999995235478985211222446677873689999899984083
Q gi|254780977|r 2 LIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVESILSNAP 81 (95)
Q Consensus 2 ~i~~~~i~~la~LarL~l~eee~~~~~~~l~~il~~v~~l~~vdt~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~nap 81 (95)
||++++|+|||+||||+|+++|++.++++|++||+||++|+++||+||+||+|+.+ .+.||+|++.++.+++++|+|||
T Consensus 1 mi~~e~v~~lA~Larl~l~eeE~~~~~~~l~~Il~~~~~L~~vDt~~v~p~~~~~~-~~~lReD~~~~~~~~e~~l~nap 79 (94)
T 3h0l_C 1 MVDREWVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFE-ETPMREDEPHPSLDREKALMNAP 79 (94)
T ss_dssp -CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTTGGGSCCTTCCCCCCCCS-SCCCBCSCCCCCCCHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 98999999999984789999999999999999999999983556588886656554-66878882889979999987675
Q ss_pred HHCCCEEECCEECC
Q ss_conf 32075685350049
Q gi|254780977|r 82 HVEKNFFVVPKAVE 95 (95)
Q Consensus 82 ~~~~~yf~VPkViE 95 (95)
+.++|||+||||||
T Consensus 80 ~~~~~yf~VPkVie 93 (94)
T 3h0l_C 80 ERKDGFFVVPRVVE 93 (94)
T ss_dssp SEETTEEEEECCC-
T ss_pred CCCCCEEECCEEEE
T ss_conf 31499487010767
No 3
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=99.96 E-value=1e-29 Score=181.82 Aligned_cols=89 Identities=24% Similarity=0.367 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 98888999999998527788999999999999999999999523547898521122244667787368999989998408
Q gi|254780977|r 1 MLIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVESILSNA 80 (95)
Q Consensus 1 M~i~~~~i~~la~LarL~l~eee~~~~~~~l~~il~~v~~l~~vdt~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~na 80 (95)
|+|++++|+|||+||||+|+++|.+.++++|++||+||++|+++||+||+|+++ +||+|++.++++++++|+||
T Consensus 4 M~i~~e~v~~lA~Larl~l~eeE~~~~~~~l~~Il~~~~~L~~vdt~~v~p~~~------~lReD~~~~~~~~e~~l~na 77 (92)
T 3kfu_G 4 MELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEEALG------RLREDEPRPSLPQAEALALA 77 (92)
T ss_dssp -CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCC------CCBCSCCCCCCCHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCCCCCHHHHHHCC
T ss_conf 747999999999982789999999999999999999999983246578874445------78899688987999998657
Q ss_pred HHHCCCEEECCEECC
Q ss_conf 332075685350049
Q gi|254780977|r 81 PHVEKNFFVVPKAVE 95 (95)
Q Consensus 81 p~~~~~yf~VPkViE 95 (95)
|++++|||+||||||
T Consensus 78 p~~~~~~f~VPkVie 92 (92)
T 3kfu_G 78 PEAEDGFFRVPPVLE 92 (92)
T ss_dssp SSEETTEEEECCC--
T ss_pred CCCCCCEEECCCEEC
T ss_conf 631399675373609
No 4
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.81 E-value=1.9e-05 Score=49.48 Aligned_cols=92 Identities=23% Similarity=0.268 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCH
Q ss_conf 88889999999985277889999999999999999999995235478985211222446677873689999899984083
Q gi|254780977|r 2 LIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVESILSNAP 81 (95)
Q Consensus 2 ~i~~~~i~~la~LarL~l~eee~~~~~~~l~~il~~v~~l~~vdt~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~nap 81 (95)
+++++.+.++-.+++|++++++.+......+-|+++...|..++..||++++.+...-..+++-.+.-..-++.+-+++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (592)
T 3al0_C 4 KVTKDLVLHLENLARLELSEDQRESLMKDFQEILDYVELLNEVDVEGVEPMYTPVEDSAKLRKGDPRFFEMRDLIKKNFP 83 (592)
T ss_dssp CCCSTHHHHHHTTTTCCCCSSSHHHHHHHHHHHHHHHTTTCSSCCSSCCCCSCCSCSCCCCBCCCCCCCTTHHHHHTTCS
T ss_pred EEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCH
T ss_conf 64354553146566244668999999999999876887687776425533466488899998538728899998731260
Q ss_pred HHCCCEEECCEE
Q ss_conf 320756853500
Q gi|254780977|r 82 HVEKNFFVVPKA 93 (95)
Q Consensus 82 ~~~~~yf~VPkV 93 (95)
+...+.-.+||.
T Consensus 84 ~~~~~~~~~~~~ 95 (592)
T 3al0_C 84 EEKDGHIKVPGI 95 (592)
T ss_dssp CEETTEEEEECC
T ss_pred HHHHHHHHHHHC
T ss_conf 445777512320
No 5
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=21.50 E-value=41 Score=14.91 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHCC----CCCHHHHHHHH
Q ss_conf 8888999999998527----78899999999
Q gi|254780977|r 2 LIDVVDVKRIAHFSRI----SIKEEDIPLFL 28 (95)
Q Consensus 2 ~i~~~~i~~la~LarL----~l~eee~~~~~ 28 (95)
|++++.|.+|-.||+. .||++|..+=.
T Consensus 1 M~~~e~I~RINeLakK~K~~gLT~eEk~Eq~ 31 (85)
T 2hep_A 1 MISNAKIARINELAAKAKAGVITEEEKAEQQ 31 (85)
T ss_dssp CCCSHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9868899999999987601489999999999
No 6
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=20.37 E-value=48 Score=14.53 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHCC----CCCHHHHHHH
Q ss_conf 8888999999998527----7889999999
Q gi|254780977|r 2 LIDVVDVKRIAHFSRI----SIKEEDIPLF 27 (95)
Q Consensus 2 ~i~~~~i~~la~LarL----~l~eee~~~~ 27 (95)
|++++.|.+|-.||+- .||++|..+=
T Consensus 1 M~~~e~i~RINeLakK~K~~GLT~eE~~EQ 30 (54)
T 2jvd_A 1 MISNAKIARINELAAKAKAGVITEEEKAEQ 30 (54)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 987889999999999876148999999999
No 7
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=20.06 E-value=49 Score=14.49 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 988889999999985277889999999999999
Q gi|254780977|r 1 MLIDVVDVKRIAHFSRISIKEEDIPLFLLRLNN 33 (95)
Q Consensus 1 M~i~~~~i~~la~LarL~l~eee~~~~~~~l~~ 33 (95)
+.|+|..+++-..-.|-+|+.++....+..+..
T Consensus 24 ~~M~K~~LRk~~~~~R~~Ls~~~~~~~s~~I~~ 56 (189)
T 1sbq_A 24 GHMDKNALRKQILQKRMALSTIEKSHLDQKINQ 56 (189)
T ss_dssp --CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 896899999999999985999999999999999
No 8
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for structural genomics of infectious diseases; 2.61A {Vibrio cholerae o1 biovar el tor str}
Probab=19.05 E-value=52 Score=14.37 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 888899999999852778899999999999--999999999952
Q gi|254780977|r 2 LIDVVDVKRIAHFSRISIKEEDIPLFLLRL--NNTLSVLEKISE 43 (95)
Q Consensus 2 ~i~~~~i~~la~LarL~l~eee~~~~~~~l--~~il~~v~~l~~ 43 (95)
.++++++++|-+++--..+++.+.+....| .++-.+++.++.
T Consensus 165 R~~~~~i~~l~~~~ww~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (212)
T 3eev_A 165 RFSDVEIAMLLEMAWWNWPESWLKESMQSLCSSDIEGLYLNWQS 208 (212)
T ss_dssp SSCHHHHHHHHHHCGGGSCHHHHHHTHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 69999999999716546999999999887522689999999998
No 9
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=16.87 E-value=59 Score=14.08 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHCC----CCCHHHHHHHHH
Q ss_conf 8888999999998527----788999999999
Q gi|254780977|r 2 LIDVVDVKRIAHFSRI----SIKEEDIPLFLL 29 (95)
Q Consensus 2 ~i~~~~i~~la~LarL----~l~eee~~~~~~ 29 (95)
|++++.|.+|-.||+. .||++|..+=..
T Consensus 1 M~~~e~I~RINeLakK~K~~gLT~eEk~Eq~~ 32 (60)
T 3bhp_A 1 MISNAKIARINELAAKAKAGVITEEEKAEQQK 32 (60)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 98688999999999987404899999999999
No 10
>1izm_A Hypothetical protein HI0817; structural genomics, YGFB, structure 2 function project, S2F, unknown function; 1.95A {Haemophilus influenzae} SCOP: a.199.1.1
Probab=15.08 E-value=65 Score=13.82 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHH
Q ss_conf 899999999852778899-99999999999999999
Q gi|254780977|r 5 VVDVKRIAHFSRISIKEE-DIPLFLLRLNNTLSVLE 39 (95)
Q Consensus 5 ~~~i~~la~LarL~l~ee-e~~~~~~~l~~il~~v~ 39 (95)
++-++.++.+|++.+++. +-+.--..+..|++|+.
T Consensus 127 ~E~l~Dl~~Iaql~~d~~d~~ee~E~~~~El~EyvR 162 (184)
T 1izm_A 127 GEAVDDLQDICQLGYDEDDNEEELAEALEEIIEYVR 162 (184)
T ss_dssp HHHHHHHHHHTTCCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999998999983168667764678999999999999
Done!