RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln)
amidotransferase subunit C protein [Candidatus Liberibacter asiaticus
str. psy62]
         (95 letters)



>gnl|CDD|31065 COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
          [Translation, ribosomal structure and biogenesis].
          Length = 96

 Score = 77.6 bits (191), Expect = 7e-16
 Identities = 37/95 (38%), Positives = 57/95 (60%)

Query: 1  MLIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKM 60
          M ID  +VK +A  +R+ + EE++  F  +L + L  +E+++EV+ EGVEP    + +  
Sbjct: 1  MAIDREEVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVSN 60

Query: 61 VHRPDVVCDGDKVESILSNAPHVEKNFFVVPKAVE 95
          V R D V +G   E +L+NAP  E  FF VPK +E
Sbjct: 61 VLREDEVTEGLDREELLANAPESEDGFFKVPKIIE 95


>gnl|CDD|145703 pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransferase C subunit.
          This is a family of Glu-tRNAGln amidotransferase C
          subunits. The Glu-tRNA Gln amidotransferase enzyme
          itself is an important translational fidelity mechanism
          replacing incorrectly charged Glu-tRNAGln with the
          correct Gln-tRANGln via transmidation of the
          misacylated Glu-tRNAGln. This activity supplements the
          lack of glutaminyl-tRNA synthetase activity in
          gram-positive eubacterteria, cyanobacteria, Archaea,
          and organelles.
          Length = 72

 Score = 70.6 bits (174), Expect = 8e-14
 Identities = 28/72 (38%), Positives = 40/72 (55%)

Query: 19 IKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVESILS 78
          + EE++  F  +LN  L  +E+++EV+ EGVEP    + +  V R D V      E IL+
Sbjct: 1  LSEEELEKFTGQLNKILDYVEQLNEVDTEGVEPTSHPLDLTNVLREDEVTPSLDREEILA 60

Query: 79 NAPHVEKNFFVV 90
          NAP  E  FF V
Sbjct: 61 NAPESEDGFFKV 72


>gnl|CDD|39448 KOG4247, KOG4247, KOG4247, Mitochondrial DNA polymerase accessory
           subunit [Replication, recombination and repair].
          Length = 175

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 6   VDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSV-VPMKMVHRP 64
           +D K I H  R+S+   D    +  L +++ V +++  V+VEGVEPM +V    +     
Sbjct: 48  IDAKLINHLERLSLVRFDSEQAVANLRSSIRVAKRLELVDVEGVEPMHTVWEDQECPTFE 107

Query: 65  DVVCDGDKVESILSNAPHVEKNFFVVP 91
           DV  D   +E +  NA     +FFV P
Sbjct: 108 DVEEDPLPIEEVFRNASLRFDDFFVTP 134


>gnl|CDD|147562 pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein. 
          This family consists of several ROS/MUCR
          transcriptional regulator proteins. The ros chromosomal
          gene is present in octopine and nopaline strains of
          Agrobacterium tumefaciens as well as in Rhizobium
          meliloti. This gene encodes a 15.5-kDa protein that
          specifically represses the virC and virD operons in the
          virulence region of the Ti plasmid and is necessary for
          succinoglycan production. Sinorhizobium meliloti can
          produce two types of acidic exopolysaccharides,
          succinoglycan and galactoglucan, that are
          interchangeable for infection of alfalfa nodules. MucR
          from Sinorhizobium meliloti acts as a transcriptional
          repressor that blocks the expression of the exp genes
          responsible for galactoglucan production therefore
          allowing the exclusive production of succinoglycan.
          Length = 130

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 12 AHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPD-VVC-- 68
          A+ S  S+  E++P  +  ++  L+ L   +       E     VP+K    PD ++C  
Sbjct: 16 AYVSNNSVPAEELPGLIQSVHAALAGLGAPAAAPAAEEEKPTPAVPIKKSVTPDYIICLE 75

Query: 69 DGDK 72
          DG K
Sbjct: 76 DGKK 79


>gnl|CDD|36394 KOG1179, KOG1179, KOG1179, Very long-chain acyl-CoA
           synthetase/fatty acid transporter [Lipid transport and
           metabolism].
          Length = 649

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)

Query: 34  TLSVLEKISEVNVEGVE-P-------MVSVVPMKMVHRPDVVCDGDKVESILS 78
            LS L+ + +VNV GV  P       M ++     V  P    D +K+   L 
Sbjct: 529 VLSALDFLQDVNVYGVTVPGYEGRAGMAAI-----VLDPTTEKDLEKLYQHLR 576


>gnl|CDD|176973 CHL00032, ndhA, NADH dehydrogenase subunit 1.
          Length = 363

 Score = 24.9 bits (55), Expect = 4.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)

Query: 1  MLIDVVDVKRIAHFSRI-SIKEED------IPLFLLRLNNTLSVL 38
          M+ID  +V+ I  FSR+ S+KE        +P+  L L  T+ VL
Sbjct: 1  MIIDTTEVQAINSFSRLESLKEVYGLIWILVPILTLVLGITIGVL 45


>gnl|CDD|34803 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT),
           subunit GPI8 [Posttranslational modification, protein
           turnover, chaperones].
          Length = 382

 Score = 25.0 bits (54), Expect = 5.0
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 6   VDVKRIAHFSRISIKEEDI---PLFLLR------LNNTLSVLEKISEVNVEGVEPMVSVV 56
           +     +H S   I    I     F L+      + + L++ + ++ +N E +   V V 
Sbjct: 212 IGQSSYSHHSDSLIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLLASLNKEPIHSHVGVR 271

Query: 57  PMKMVHRPDVVCDGDKVESILSNAPHVEKNFFVVPK 92
            +    RP      D   ++ ++A  + K+ +   +
Sbjct: 272 ELVFDRRPSDFLITDFFANVQNSALELLKSHYHHFR 307


>gnl|CDD|36330 KOG1114, KOG1114, KOG1114, Tripeptidyl peptidase II
            [Posttranslational modification, protein turnover,
            chaperones].
          Length = 1304

 Score = 24.9 bits (54), Expect = 5.2
 Identities = 9/56 (16%), Positives = 21/56 (37%)

Query: 36   SVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVESILSNAPHVEKNFFVVP 91
            S+LEK+ E+ +   + + + + + +       C G       +  P V    +   
Sbjct: 950  SLLEKLKELTLRVSKKLGNPITLDLYANHSDACLGKTKFERENLPPGVVSFVYGTN 1005


>gnl|CDD|33715 COG3933, COG3933, Transcriptional antiterminator [Transcription].
          Length = 470

 Score = 24.1 bits (52), Expect = 9.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 2   LIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVE 47
           L+ +VD+  +  F  I  +E  IP+ ++   +T  VLE   ++++ 
Sbjct: 168 LLLLVDMGSLTSFGSIISEEFGIPVKVIPNVSTSMVLEAGRKISLG 213


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.138    0.383 

Gapped
Lambda     K      H
   0.267   0.0809    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,104,802
Number of extensions: 47223
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 13
Length of query: 95
Length of database: 6,263,737
Length adjustment: 63
Effective length of query: 32
Effective length of database: 4,902,370
Effective search space: 156875840
Effective search space used: 156875840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)