RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln)
amidotransferase subunit C protein [Candidatus Liberibacter asiaticus
str. psy62]
(95 letters)
>gnl|CDD|178810 PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransferase subunit
C; Reviewed.
Length = 95
Score = 94.9 bits (237), Expect = 5e-21
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 1 MLIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKM 60
M I +VK +A +R+ + EE++ F +LN L +E+++EV+ EGVEP + MK
Sbjct: 1 MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLDMKN 60
Query: 61 VHRPDVVCDGDKVESILSNAPHVEKNFFVVPKAVE 95
V R DVV + E L NAP E +F VPK +E
Sbjct: 61 VLREDVVTESLPREEALKNAPESEDGYFKVPKVIE 95
>gnl|CDD|129241 TIGR00135, gatC, glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)
amidotransferase, C subunit. This model has been
revised to remove the candidate sequence from
Methanococcus jannaschii, now part of a related model.
Length = 93
Score = 79.6 bits (197), Expect = 2e-16
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 3 IDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVH 62
I +VK +A +R+ + EE+ F L+ L +E+++EV+ E VEPM + + V
Sbjct: 1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILGFVEQLNEVDTENVEPMTHPLEISNVL 60
Query: 63 RPDVVCDGDKVESILSNAPHVEKNFFVVPKAVE 95
R D + + IL NAP E F VPK +E
Sbjct: 61 REDEPEEPLSRDDILKNAPEKEDGFIKVPKIIE 93
>gnl|CDD|162010 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type,
tartrate/fumarate subfamily, alpha region. A number of
Fe-S cluster-containing hydro-lyases share a conserved
motif, including argininosuccinate lyase,
adenylosuccinate lyase, aspartase, class I fumarate
hydratase (fumarase), and tartrate dehydratase. This
model represents a subset of closely related proteins or
modules, including the E. coli tartrate dehydratase
alpha chain and the N-terminal region of the class I
fumarase (where the C-terminal region is homologous to
the tartrate dehydratase beta chain). The activity of
archaeal proteins in this subfamily has not been
established.
Length = 273
Score = 27.8 bits (62), Expect = 0.56
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 24 IPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVES 75
+P+F +++ + ++ K+ E +GVE VP+ RP+ V + +
Sbjct: 63 VPIFFVKVGSRFVLIGKLYEAIKQGVEEATEEVPL----RPNAVHPLTRENT 110
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 27.6 bits (61), Expect = 0.73
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 15 SRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPM--KMVHRPDVV-CDGD 71
SRI E + L + + ++ ++ + EP+ S P +M + C
Sbjct: 624 SRIGFAEAERAAIESALADAEELAAQLEDIACD-EEPLFSPAPAANRMGEGLEARECSFA 682
Query: 72 KVESILSNAPHVEKNFFVVPKAVE 95
IL NAP V+ ++F V ++
Sbjct: 683 ATGEILKNAPAVKGDYFKVAGILD 706
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.
Length = 874
Score = 25.1 bits (55), Expect = 4.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 31 LNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPD 65
+ NTL V +KI N+ G EP + P+ H PD
Sbjct: 267 IANTLEVADKIEPYNILG-EPRIPNYPVPSGHTPD 300
>gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase. This clade of
genes encoding iron-containing alcohol dehydrogenase
(pfam00465) proteins is generally found in apparent
operons for the catabolism of rhamnose or fucose.
Catabolism of both of these monosaccharides results in
lactaldehyde which is reduced by this enzyme to 1,2
propanediol. This protein is alternatively known by the
name 1,2 propanediol oxidoreductase. This enzyme is
active under anaerobic conditions in E. coli while being
inactivated by reactive oxygen species under aerobic
conditions. Under aerobic conditions the lactaldehyde
product of rhamnose and fucose catabolism is believed to
be oxidized to lactate by a separate enzyme,
lactaldehyde dehydrogenase.
Length = 379
Score = 24.3 bits (53), Expect = 6.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 12 AHFSRISIKEEDIPLFL 28
S + +KEEDIP
Sbjct: 338 EGLSELGVKEEDIPALA 354
>gnl|CDD|178151 PLN02536, PLN02536, diaminopimelate epimerase.
Length = 267
Score = 24.0 bits (52), Expect = 8.0
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 23 DIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKVESI 76
++P L +V++ +E++V+G +V+ V M H KV+ +
Sbjct: 113 EVP-TKLAATKDGAVVQ--AELDVDGKTWLVTCVSMGNPHCVTFGEKELKVDDL 163
>gnl|CDD|178529 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase.
Length = 328
Score = 24.1 bits (53), Expect = 8.6
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 23 DIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKV 73
D P + RL+N S+L+ ++++ + V VP ++V D D V
Sbjct: 97 DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVG-VPKQLVVYDDESSIPDAV 146
>gnl|CDD|182595 PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.
Length = 382
Score = 24.2 bits (53), Expect = 8.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 6 VDVKRIAHFSRISIKEEDIP 25
DV H + +KEEDIP
Sbjct: 331 RDVGIPPHLRDVGVKEEDIP 350
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.138 0.383
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,524,467
Number of extensions: 81653
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 25
Length of query: 95
Length of database: 5,994,473
Length adjustment: 63
Effective length of query: 32
Effective length of database: 4,633,169
Effective search space: 148261408
Effective search space used: 148261408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (22.9 bits)