RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln)
amidotransferase subunit C protein [Candidatus Liberibacter asiaticus
str. psy62]
         (95 letters)



>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C
          subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
          Length = 92

 Score = 84.4 bits (209), Expect = 2e-18
 Identities = 26/90 (28%), Positives = 40/90 (44%)

Query: 3  IDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVH 62
          +   +V+ IA+ +R+ I  E+       L + L   ++    + EGVEP   V+ ++ V 
Sbjct: 2  VTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVL 61

Query: 63 RPDVVCDGDKVESILSNAPHVEKNFFVVPK 92
          R D    G   E  L NA   E   F VP 
Sbjct: 62 REDKAIKGIPQELALKNAKETEDGQFKVPT 91


>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068
          {Anabaena variabilis [TaxId: 1172]}
          Length = 200

 Score = 22.9 bits (48), Expect = 6.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 58 MKMVHRPDVVC 68
          MK +HRPD+  
Sbjct: 1  MKSLHRPDLYS 11


>d1r4pa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
           toxin II [TaxId: 622]}
          Length = 297

 Score = 23.0 bits (49), Expect = 7.8
 Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 7   DVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMV 61
            ++R+A   R       + +    L ++   L + S   +        +  + + 
Sbjct: 116 TLQRVAALER-----SGMQISRHSLVSSYLALMEFSGNTMTRDASRAVLRFVTVT 165


>d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 378

 Score = 22.9 bits (48), Expect = 8.0
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 12  AHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCD 69
           + FS +S   E   + L  + + +S+     E+  +G + +       + H+ ++  D
Sbjct: 305 SDFSGMS---ETKGVALSNVIHKVSL-----EITEDGGDSIEVPGARILQHKDELNAD 354


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.383 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,052
Number of extensions: 13544
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 10
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)