RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln) amidotransferase subunit C protein [Candidatus Liberibacter asiaticus str. psy62] (95 letters) >d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]} Length = 92 Score = 84.4 bits (209), Expect = 2e-18 Identities = 26/90 (28%), Positives = 40/90 (44%) Query: 3 IDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVH 62 + +V+ IA+ +R+ I E+ L + L ++ + EGVEP V+ ++ V Sbjct: 2 VTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVL 61 Query: 63 RPDVVCDGDKVESILSNAPHVEKNFFVVPK 92 R D G E L NA E F VP Sbjct: 62 REDKAIKGIPQELALKNAKETEDGQFKVPT 91 >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Length = 200 Score = 22.9 bits (48), Expect = 6.5 Identities = 6/11 (54%), Positives = 8/11 (72%) Query: 58 MKMVHRPDVVC 68 MK +HRPD+ Sbjct: 1 MKSLHRPDLYS 11 >d1r4pa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae, toxin II [TaxId: 622]} Length = 297 Score = 23.0 bits (49), Expect = 7.8 Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 5/55 (9%) Query: 7 DVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMV 61 ++R+A R + + L ++ L + S + + + + Sbjct: 116 TLQRVAALER-----SGMQISRHSLVSSYLALMEFSGNTMTRDASRAVLRFVTVT 165 >d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]} Length = 378 Score = 22.9 bits (48), Expect = 8.0 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 12 AHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCD 69 + FS +S E + L + + +S+ E+ +G + + + H+ ++ D Sbjct: 305 SDFSGMS---ETKGVALSNVIHKVSL-----EITEDGGDSIEVPGARILQHKDELNAD 354 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.138 0.383 Gapped Lambda K H 0.267 0.0662 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 341,052 Number of extensions: 13544 Number of successful extensions: 30 Number of sequences better than 10.0: 1 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 10 Length of query: 95 Length of database: 2,407,596 Length adjustment: 58 Effective length of query: 37 Effective length of database: 1,611,256 Effective search space: 59616472 Effective search space used: 59616472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.0 bits)