BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln)
amidotransferase subunit C protein [Candidatus Liberibacter asiaticus
str. psy62]
         (95 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln) amidotransferase subunit C protein
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 95

 Score =  185 bits (470), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MLIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKM 60
          MLIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKM
Sbjct: 1  MLIDVVDVKRIAHFSRISIKEEDIPLFLLRLNNTLSVLEKISEVNVEGVEPMVSVVPMKM 60

Query: 61 VHRPDVVCDGDKVESILSNAPHVEKNFFVVPKAVE 95
          VHRPDVVCDGDKVESILSNAPHVEKNFFVVPKAVE
Sbjct: 61 VHRPDVVCDGDKVESILSNAPHVEKNFFVVPKAVE 95


>gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 152

 Score = 28.1 bits (61), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 55  VVPMKMVHRPDVVCDGDKVESILSNA 80
           V+P+ ++HRP V+  G KV  IL+  
Sbjct: 81  VIPLSVLHRPYVISRGAKVRIILTQG 106


>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 199

 Score = 25.0 bits (53), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 41/92 (44%)

Query: 35  LSVLEKISEVNVEGVEPMVSVVPMKMVHRPDVVCDGDKV--------------------- 73
           L +LEKI       V PMV +   K++H  D+ C G+K+                     
Sbjct: 76  LEILEKI-------VHPMVRMHEKKILH--DLSCRGEKIVFFDTPLLFEKRKEYLFDAVV 126

Query: 74  ----------ESILSNAPHVEKNF-FVVPKAV 94
                     E +LS   H E+NF F++ K +
Sbjct: 127 VVTCSFETQRERVLSRKKHTEENFLFILSKQM 158


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 21.9 bits (45), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 56  VPMKMVHRPDVVCDGDKVES 75
           +P+K+VH     CDG   ES
Sbjct: 247 IPVKIVHHILASCDGKPGES 266


>gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 489

 Score = 20.4 bits (41), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 66  VVCDGDKVESILSNAPHVEKNFFVVPKAV 94
           VV  GD   + L++A   + +F  +PK V
Sbjct: 180 VVPVGDNFYAALNSAVFTDGSFVYIPKGV 208


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score = 20.4 bits (41), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 19/29 (65%)

Query: 34 TLSVLEKISEVNVEGVEPMVSVVPMKMVH 62
          T+SVL  +S +++ G + ++ + P+++  
Sbjct: 31 TVSVLTALSYIHLWGEKSVLVIAPLRVAQ 59


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,498
Number of Sequences: 1233
Number of extensions: 2236
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 95
length of database: 328,796
effective HSP length: 60
effective length of query: 35
effective length of database: 254,816
effective search space:  8918560
effective search space used:  8918560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)