HHsearch results for GI: 254780978 and protein with PDBid: 2dc0_A

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=746.56  Aligned_cols=430  Identities=30%  Similarity=0.439  Sum_probs=363.1

Q ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHHCCCC
Q ss_conf             5099999999968987899999999999996885558999888999999999999997888-988661212232000048
Q gi|254780978|r    7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDCFATK   85 (493)
Q Consensus         7 ~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~~~v~   85 (493)
                      |++.||+++|++|++||+||+++|++||+++|+ +|||+++++|+|+++|+++|+++++|+ .+|||||||+|||+|+||
T Consensus         1 ~d~~e~~~~~~~g~~t~~~~~~~~l~ri~~~~~-~na~~~~~~~~a~~~A~~~d~~~~~g~~~gpL~GiPi~vKD~~~~~   79 (434)
T 2dc0_A            1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVK   79 (434)
T ss_dssp             CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBT
T ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf             988999999986999899999999999986099-8889996999999999999999977999898678879988360568


Q ss_pred             CCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78553303765157544432104688874000011100000135665322223433566767656655445554445421
Q gi|254780978|r   86 GIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSA  165 (493)
Q Consensus        86 g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~  165 (493)
                      |++||+|+.++++. +.+||++|++|+++|||++||||||||+++..+.|++||+|+||||+.     ++|||||||+|+
T Consensus        80 g~~tt~Gs~~~~~~-~~~da~~V~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~np~~~~-----~~~gGSSgGsaa  153 (434)
T 2dc0_A           80 GMPTRAGTKAPLPP-LPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPS-----RQAGGSSGGSAV  153 (434)
T ss_dssp             TBCCCTTCSSCCCC-CCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTT-----BBCCSSSHHHHH
T ss_pred             CCEECCCCCHHCCC-CCCCCHHHHHHHHCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHH
T ss_conf             94516837400157-997419999999789898476477132157666688989877976665-----557999856899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             00123343224321121111305541110115454100011233222212123544322023446653022467431011
Q gi|254780978|r  166 AVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATC  245 (493)
Q Consensus       166 ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~  245 (493)
                      +||+|++++++|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.+.+..|+..
T Consensus       154 ava~g~~~~aiGtDtgGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gpmarsv~D~a~~~~v~~g~~~~~~~~  233 (434)
T 2dc0_A          154 AVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGV  233 (434)
T ss_dssp             HHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTSCCCCCCC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHC
T ss_conf             86458863357889887521270640987663589989899977767887836622076888999999972998201111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             11246531012444322222234344443332014565566566543322110135688721455554444456789888
Q gi|254780978|r  246 VNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASSN  325 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~~e~~~~  325 (493)
                      .                +.++++...+.....++++..+++++.+.++..|+++++++++.... ...+..+...+....
T Consensus       234 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  296 (434)
T 2dc0_A          234 Q----------------NPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLPLEGV-YEVYTRLVRYEAARI  296 (434)
T ss_dssp             C----------------SCEEEECHHHHTTCSCHHHHHHHHHHHHHTTTTTCEEEECCCCCTTH-HHHHHHHHHHHHHHH
T ss_pred             C----------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH-HHHHHHHHHHHHHCC
T ss_conf             3----------------66545431112454219999999999999875276302314733678-999999988753111


Q ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             77653331031002431024554321000014666665302333332000122334578999999999999863998999
Q gi|254780978|r  326 LARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVIL  405 (493)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~lI  405 (493)
                      ..                  .+.......+.++++.++..+..     ....+|.++...|+.+++.+.++|. +||+||
T Consensus       297 ~~------------------~~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~~~~~f~-~~D~ll  352 (434)
T 2dc0_A          297 HE------------------KALKEHPEGFSPQVREALLAGLA-----LTEKDYRDAVAEREALRLELVKALR-GVDALL  352 (434)
T ss_dssp             SH------------------HHHHHCGGGSCHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHT-TSSEEE
T ss_pred             CC------------------CHHHCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEE
T ss_conf             11------------------01220755412578888751442-----1004567777777776666653145-778899


Q ss_pred             ECCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             17998999877633467325---788764378999998789837684035599983799995189987999999999999
Q gi|254780978|r  406 TPTTPTSAFPLGKEENNSGS---MGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEK  482 (493)
Q Consensus       406 ~Pt~~~~a~~~~~~~~~~~~---~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~  482 (493)
                      +||++.+|++++........   ........||.++|++|+|++|||+|+. +|||+||||||++|+|++||++|++||+
T Consensus       353 ~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlQlig~~~~D~~LL~iA~~lE~  431 (434)
T 2dc0_A          353 LPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKV-EGMPVGLQVVGAYGEDGKVLALGGWLEA  431 (434)
T ss_dssp             EESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHHHHHT
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             578787887767554454322102578899987999997899399837789-9975758888999999999999999998


Q ss_pred             HHC
Q ss_conf             925
Q gi|254780978|r  483 EAG  485 (493)
Q Consensus       483 ~~~  485 (493)
                      ++|
T Consensus       432 ~lG  434 (434)
T 2dc0_A          432 RLG  434 (434)
T ss_dssp             TCC
T ss_pred             HHC
T ss_conf             569