HHsearch results for GI: 254780978 and protein with PDBid: 3ip4_A
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=0 Score=864.67 Aligned_cols=480 Identities=45% Similarity=0.760 Sum_probs=445.6
Q ss_pred CCCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHH
Q ss_conf 9841345099999999968987899999999999996885558999888999999999999997888-988661212232
Q gi|254780978|r 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIK 79 (493)
Q Consensus 1 m~~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vK 79 (493)
|+ +.+.||.||+++|++|++||+||+++|++||+++|+.+|||+++++|+||++|+++|+++++|+ .+|||||||+||
T Consensus 1 m~-~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vK 79 (485)
T 3ip4_A 1 MS-IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIK 79 (485)
T ss_dssp CC-GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEE
T ss_pred CC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 99-85789999999998599989999999999999869864399996999999999999999977999998486879987
Q ss_pred HHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00004878553303765157544432104688874000011100000135665322223433566767656655445554
Q gi|254780978|r 80 DCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGS 159 (493)
Q Consensus 80 D~~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGS 159 (493)
|+|+|+|++||+|+.+++++++.+|+++|++|+++|||++||||||||+++.+|.|.+||+|+||||+. ++||||
T Consensus 80 D~~~v~G~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~-----~~~GGS 154 (485)
T 3ip4_A 80 DNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHK-----AVPGGS 154 (485)
T ss_dssp TTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTT-----BCCCSS
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC
T ss_conf 560668971587784440689853202455576279774455677540466677885556776875443-----456898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 44542100123343224321121111305541110115454100011233222212123544322023446653022467
Q gi|254780978|r 160 SGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYD 239 (493)
Q Consensus 160 s~G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d 239 (493)
|||+|++||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++||+|||||||+|+++++++|+++|
T Consensus 155 SgGsaaavA~g~~~~alGtD~~GSiR~PAa~~G~~g~kpt~g~i~~~G~~~~~~~~d~~Gpmar~v~D~~l~l~~~~g~d 234 (485)
T 3ip4_A 155 SGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGAD 234 (485)
T ss_dssp SHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred CCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 61007788761577688627885001237984945772899877899987767777831312299999999997301898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 43101111246531012444322222234344443332014565566566543322110135688721455554444456
Q gi|254780978|r 240 ECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISP 319 (493)
Q Consensus 240 ~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~~~~ 319 (493)
+.|+.+.+.+..++...+..+++++|||++.+++...+++++.++++++++.|+++|++|+|+++|......+.++.+..
T Consensus 235 ~~d~~s~~~~~~~~~~~~~~~lk~lrIg~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~~~~ 314 (485)
T 3ip4_A 235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIAS 314 (485)
T ss_dssp TTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 43344678886453556256866878999720215778989999999999999978999999379861556788999999
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7898887765333103100-243102455432100001466666530233333200012233457899999999999986
Q gi|254780978|r 320 AEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFE 398 (493)
Q Consensus 320 ~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~ 398 (493)
.++..++..|++.++.... ...++.+++...+...++++++.++..+....+..+.+..|.++.+.+..+...+.++|.
T Consensus 315 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~ 394 (485)
T 3ip4_A 315 SEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFE 394 (485)
T ss_dssp HHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998898755233110133313699999864232028899999986555532235899999999876666668999872
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 39989991799899987763346732578876437899999878983768403559998379999518998799999999
Q gi|254780978|r 399 QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478 (493)
Q Consensus 399 ~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~ 478 (493)
+||+||+||++.+|+++++.... ....+....||.++|++|+|+++||+|+. +|||+||||||++|+|++||++|+
T Consensus 395 -~~D~ll~Pt~~~~a~~~~~~~~~--~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-~GlPvGvQivg~~~~D~~LL~iA~ 470 (485)
T 3ip4_A 395 -NYDVVVGPTAPTTAFNLGEEIDD--PLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAY 470 (485)
T ss_dssp -TCSEEEEESSSSSCCBTTTSTTC--HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHH
T ss_pred -CCCEEEECCCCCCCCCCCCCCCC--HHHHHHCCHHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf -59999957988777886533478--88887400899999997899299978789-998876778899999999999999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999992577978
Q gi|254780978|r 479 IIEKEAGYFRPH 490 (493)
Q Consensus 479 ~~E~~~~~~~pp 490 (493)
+||++++|++-+
T Consensus 471 ~~E~~~~~~~~~ 482 (485)
T 3ip4_A 471 QYETQYNLHDVY 482 (485)
T ss_dssp HHHHHSCCTTTG
T ss_pred HHHHCCCCCCCC
T ss_conf 999618966379