HHSEARCH alignment of GI: 254780978 and SCOP domain: d1mt5a_

Alignment
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=0  Score=787.51  Aligned_cols=458  Identities=21%  Similarity=0.295  Sum_probs=366.2

Q ss_pred             CCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHH
Q ss_conf             41345099999999968987899999999999996885558999888999999999999997888-98866121223200
Q gi|254780978|r    3 ELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDC   81 (493)
Q Consensus         3 ~~~~~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~   81 (493)
                      +|..|||.||+++|++|++|++||+++|++||+++|+.+|||+++++|.+++.|        +++ .+|||||||+|||+
T Consensus        37 ~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a--------~~~~~gpL~GvPi~vKD~  108 (537)
T d1mt5a_          37 ALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS--------QAPRQGLLYGVPVSLKEC  108 (537)
T ss_dssp             HHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHH--------TCCTTSTTTTCEEEEETT
T ss_pred             HHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH--------CCCCCCCCCCCEEEEECC
T ss_conf             898682999999997599989999999999999978876889880988999997--------599989858896876736


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00487855330376515754443210468887400001110000013566532222343356676765665544555444
Q gi|254780978|r   82 FATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSG  161 (493)
Q Consensus        82 ~~v~g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~  161 (493)
                      |+|+|++||+|+..++++++.+||++|++||++||||+||||||||+++.+|+|++||+|+||||+.     ++||||||
T Consensus       109 ~~~~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~-----~~~GGSSg  183 (537)
T d1mt5a_         109 FSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSS-----KSPGGSSG  183 (537)
T ss_dssp             SCCBTSBCCSSCGGGSSCBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTT-----SCCCSSSH
T ss_pred             CCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCC-----CCCCCCCC
T ss_conf             2767976376696456999984389999998578777303233332234421232200134444555-----34678767


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             5421001233432243211211113055411101154541000112332222----121235443220234466530224
Q gi|254780978|r  162 GSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAP----SLDQAGIITRTVRDSAILLKAIAG  237 (493)
Q Consensus       162 G~a~ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~----~ld~~Gpmarsv~D~~~~l~vl~g  237 (493)
                      |||++||+|++|+++|||||||||+||+||||||||||+||||+.|+.|.++    ++|++|||||||+|+++++++|+|
T Consensus       184 Gsaaavaag~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l~~l~g  263 (537)
T d1mt5a_         184 GEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLC  263 (537)
T ss_dssp             HHHHHHGGGSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             86432202341035432226453102553275023213113578897875445544445678863328899999987517


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-
Q ss_conf             6743101111246531012444322222234344443332014565566566543322110135688721455554444-
Q gi|254780978|r  238 YDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYI-  316 (493)
Q Consensus       238 ~d~~D~~~~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~~~~~~~~-  316 (493)
                      +|+.|......+.+ +......+++++|||++.++++..+++++.++++++++.|+++||+|+|+++|.+.+....+.. 
T Consensus       264 ~d~~d~~~~~~~~~-~~~~~~~~~k~lRIg~~~~~~~~~~~p~v~~a~~~a~~~L~~~Ga~Vvev~~~~~~~~~~~~~~~  342 (537)
T d1mt5a_         264 EHLFTLDPTVPPLP-FREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAG  342 (537)
T ss_dssp             HHHHHSCTTSCCCC-CCHHHHSCCSCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCTTHHHHHHTTHHH
T ss_pred             CCCCCCCCCCCCCH-HHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             88644433457501-45554200100202221254445344899998765577643666269856885267788888899


Q ss_pred             HHHHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHH---H--HHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             456789888-7765333103100243102455432---1--000014666665302333332000122334578999999
Q gi|254780978|r  317 ISPAEASSN-LARYDGVRYGLRVEGKDILEMYENT---R--SIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIK  390 (493)
Q Consensus       317 ~~~~e~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~  390 (493)
                      ....+.... +..+....  ......++....+..   +  ...+...+..++. ............+|.++...+..++
T Consensus       343 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  419 (537)
T d1mt5a_         343 GLFSDGGRSFLQNFKGDF--VDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLA-AFLNSMRPRSAEKLWKLQHEIEMYR  419 (537)
T ss_dssp             HHSTTTTHHHHGGGTTCC--CCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHH-HHHHHTSCCBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999876530454--3336899999874036789999987501028899-9987225220999999999999999


Q ss_pred             HHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-----------------
Q ss_conf             99999986-399899917998999877633467325788764378999998789837684035-----------------
Q gi|254780978|r  391 RDFTEAFE-QGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAAL-----------------  452 (493)
Q Consensus       391 ~~~~~~~~-~~~D~lI~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~-----------------  452 (493)
                      +.+.+.|. .++|+||+||++ ++++++.....      .....||.+||++|+|+++||+|+                 
T Consensus       420 ~~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~------~~~~~~T~~~NllG~PaisvP~g~v~~~~~~~~~~~~~~~~  492 (537)
T d1mt5a_         420 QSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRA------TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFG  492 (537)
T ss_dssp             HHHHHHHHHTTCSEEEEECCC-SCCCSSCGGGC------GGGGHHHHHHHHTTCCEEEEEEEECCTTTTTGGGSCCCSSC
T ss_pred             HHHHHHHHHCCCCEEEECCCC-CCCCCCCHHHH------HCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             999999866699889969988-86676872554------24621689899858996999767666433211001223333


Q ss_pred             ------------CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             ------------59998379999518998799999999999992
Q gi|254780978|r  453 ------------CEKKMPLGLQLIGQPFREETLFSVGQIIEKEA  484 (493)
Q Consensus       453 ------------~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~  484 (493)
                                  +.+|||+||||||++|+|++||++|++||+++
T Consensus       493 ~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L  536 (537)
T d1mt5a_         493 DIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM  536 (537)
T ss_dssp             SHHHHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             21111123455789998876777899999999999999999976


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]