HHSEARCH alignment of GI: 254780978 and SCOP domain: d1ocka_

Alignment
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=100.00  E-value=0  Score=713.70  Aligned_cols=408  Identities=25%  Similarity=0.389  Sum_probs=348.5

Q ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC-CCCCCCCEEHHHHHCCCC
Q ss_conf             5099999999968987899999999999996885558999888999999999999997888-988661212232000048
Q gi|254780978|r    7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGD-ARDLEGIPIGIKDCFATK   85 (493)
Q Consensus         7 ~s~~~l~~~~~~~~~t~~~~~~~~~~~i~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~-~~pL~GiPi~vKD~~~v~   85 (493)
                      |||.||++++++|++|++||+++|++||+++|+.+||+++.+.+             +.++ .+|||||||+|||+|+|+
T Consensus         2 ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~-------------~~~~~~gpL~GvPi~vKD~~~v~   68 (412)
T d1ocka_           2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS-------------ARAQASGPLRGIAVGIKDIIDTA   68 (412)
T ss_dssp             CCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-------------CCCCSSSTTTTCEEEEETTBCCS
T ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HCCCCCCCCCCCEEEEECCCCCC
T ss_conf             87899999998699989999999999999769615981744398-------------60766798688879987661778


Q ss_pred             CCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78553303765157544432104688874000011100000135665322223433566767656655445554445421
Q gi|254780978|r   86 GIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSA  165 (493)
Q Consensus        86 g~~tt~G~~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~~~~~~GGSs~G~a~  165 (493)
                      |++||+|+..++++++.+|+++|++|+++|||++|||||+||+++      .+|.+.|||++.     +++||||||+|+
T Consensus        69 G~~tt~Gs~~~~~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~-----~~~GgSSgG~aa  137 (412)
T d1ocka_          69 NMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTG-----HSPGGSSSGSAA  137 (412)
T ss_dssp             SSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTT-----BCCCSSSHHHHH
T ss_pred             CCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCC------CCCCCCCCCCCC-----CCCCCCCCCCEE
T ss_conf             974166486661788753014776520124330000016665025------665433344666-----667776787611


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             00123343224321121111305541110115454100011233222212123544322023446653022467431011
Q gi|254780978|r  166 AVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATC  245 (493)
Q Consensus       166 ava~~~~~~aiGtD~gGSiR~PAa~cGi~GlKPT~G~is~~G~~~~~~~ld~~Gpmarsv~D~~~~l~vl~g~d~~D~~~  245 (493)
                      +||+|++++++|||||||||+||+||||||||||+||||+.|+.|+++++|++|||||||+|+++++++|.+.|+.|+. 
T Consensus       138 ava~g~~~~a~GsDtgGSiR~PAa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~-  216 (412)
T d1ocka_         138 AVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGI-  216 (412)
T ss_dssp             HHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSC-
T ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-
T ss_conf             1103456655765402344101555302101344100123344443201111223445188999999864288721244-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHH
Q ss_conf             1124653101244432222223434444333201456556656654332211013568872145-555444445678988
Q gi|254780978|r  246 VNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQY-ALPAYYIISPAEASS  324 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~k~lrIgi~~~~~~~~~~~~v~~~~~~ai~~L~~~G~~vvev~~p~~~~-~~~~~~~~~~~e~~~  324 (493)
                                   .+.++.|++++.++++..+++++.+.++++++.|+++|+++++++++.... ....+..+...|...
T Consensus       217 -------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~~~~e~~~  283 (412)
T d1ocka_         217 -------------VPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHR  283 (412)
T ss_dssp             -------------CCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             -------------7764443344323233451067777888888888876402322345310233345554112578988


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             87765333103100243102455432100001466666530233333200012233457899999999999986399899
Q gi|254780978|r  325 NLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVI  404 (493)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~l  404 (493)
                      .+..+                 +.. ....+.+.++.++..+     ......+|.++++.|..++++|.++|. +||+|
T Consensus       284 ~~~~~-----------------~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~r~~~~~~~~~~f~-~~D~l  339 (412)
T d1ocka_         284 ALAWE-----------------FSE-HHDEIAPMLRASLDAT-----VGLTPKEYDEARRIGRRGRRELGEVFE-GVDVL  339 (412)
T ss_dssp             HTHHH-----------------HHH-SGGGSCHHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHHHHTT-TCSEE
T ss_pred             HHHHH-----------------HCC-CCCCCHHHHHHHHHHH-----HCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCEE
T ss_conf             77776-----------------402-4232124554433321-----012221000112467899999999982-79999


Q ss_pred             EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             91799899987763346732578876437899999878983768403559998379999518998799999999999992
Q gi|254780978|r  405 LTPTTPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEA  484 (493)
Q Consensus       405 I~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisiP~G~~~~GLPvGiQiig~~~~D~~lL~~a~~~E~~~  484 (493)
                      |+||+|.++|+++......        ..||.++|++|+|++|||+|. .+|||+||||||++++|++||++|++||+++
T Consensus       340 l~Pt~p~~ap~~~~~~~~~--------~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQiig~~~~D~~lL~~A~~~E~al  410 (412)
T d1ocka_         340 LTYSAPGTAPAKALASTGD--------PRYNRLWTLMGNPCVNVPVLK-VGGLPIGVQVIARFGNDAHALATAWFLEDAL  410 (412)
T ss_dssp             EEESSSSSCCBGGGCCCCC--------CTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCCC--------HHHHHHHHHHCCCEEEEECCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             9689988776300045687--------577599999789849983668-9996076888899998999999999999985


Q ss_pred             C
Q ss_conf             5
Q gi|254780978|r  485 G  485 (493)
Q Consensus       485 ~  485 (493)
                      +
T Consensus       411 g  411 (412)
T d1ocka_         411 A  411 (412)
T ss_dssp             T
T ss_pred             C
T ss_conf             8


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]