RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA
amidotransferase subunit A [Candidatus Liberibacter asiaticus str.
psy62]
(493 letters)
>gnl|CDD|30503 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 487 bits (1256), Expect = e-138
Identities = 226/496 (45%), Positives = 308/496 (62%), Gaps = 31/496 (6%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKA--RAAAEE 58
M L + +E LR+K++SAVELV++Y+ IE N +NA++ V + A A A
Sbjct: 1 MMALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAA 60
Query: 59 SDKRIINGDARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAV 117
+D R+ G+ L G+PI +KD T G+ T A S L+ + P Y++TV ++L GAV
Sbjct: 61 ADARLAAGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAV 120
Query: 118 MLGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIG 177
+LGK NMDEFAMGSS E S +GP +PW + PGGSSGGS+AAVA L ++G
Sbjct: 121 ILGKTNMDEFAMGSSTENSAFGPTRNPWNL-----ERVPGGSSGGSAAAVAAGLVPLALG 175
Query: 178 TDTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAG 237
+DTGGSIR PA+F G VG+KPTYGR SR G++ A SLDQ G + RTVRD+A+LL IAG
Sbjct: 176 SDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAG 235
Query: 238 YDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDY-LSPTIDKTWQQGISWLKDAG 296
D D+ + P P + ++G+ +G+PKE L P + ++ + L+ AG
Sbjct: 236 PDPRDSP-LPPPPPVPPALAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAG 294
Query: 297 AKIVEISLPHT--QYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIG 354
A++VE+SLP YAL AYY LAR+DG RYGLR ++Y TR+ G
Sbjct: 295 AEVVEVSLPLLSDDYALAAYY----------LARFDGERYGLRAA-----DLYGKTRAEG 339
Query: 355 FGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAF 414
FG EVK RIM+GTY+LS+ YD++Y RA+K TLI+R F + FE+ VDV+LTPTTPT A
Sbjct: 340 FGPEVKRRIMLGTYLLSAGYYDAYYRRAQK--TLIRRAFDKLFEE-VDVLLTPTTPTPAP 396
Query: 415 PLGKEENNSGSMGHIY-NDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETL 473
+G+ E++ +Y DVFTV N+AGLPAISVPA +P+GLQLIG F + TL
Sbjct: 397 KIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATL 456
Query: 474 FSVGQIIEKEAGYFRP 489
+ +E+ G+ R
Sbjct: 457 LRLAAALEQALGWHRR 472
>gnl|CDD|144864 pfam01425, Amidase, Amidase.
Length = 431
Score = 456 bits (1176), Expect = e-129
Identities = 202/452 (44%), Positives = 286/452 (63%), Gaps = 25/452 (5%)
Query: 25 ELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARDLEGIPIGIKDCFAT 84
ELV++Y+ E +N ++NA++ V ++A A A+ +DKR + L G+PI +KD
Sbjct: 1 ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKGPLHGVPISLKDNIDV 60
Query: 85 KGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSNETSYYGPVISP 144
KG+ T A S L+G+ P Y++TV ++L GAV+LGK NMDEFAMGS+ E S +GP +P
Sbjct: 61 KGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPTRNP 120
Query: 145 WRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGTVGIKPTYGRCS 204
W TPGGSSGGS+AAVA L +IGTDTGGSIR PA+F G VG+KPTYGR S
Sbjct: 121 WDL-----SRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVS 175
Query: 205 RLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPDYERALDQSIQGM 264
R G++ ++ SLD G + RTV D+A+LL IAGYD D T PVPD+ L +S++G+
Sbjct: 176 RYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLKGL 235
Query: 265 TVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYALPAYYIISPAEASS 324
+G+P+E L P + + ++ + L+ G ++VE+ P ++ALP YYII+PAEASS
Sbjct: 236 RIGVPREDFYFSLDPEVQRAVRKAAAALEALGHEVVEVEPPSLKHALPLYYIIAPAEASS 295
Query: 325 NLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARK 384
NL+ D+ E+Y R G EVK RI +G Y LS+ ++YL+A+K
Sbjct: 296 NLS--------------DLDELYPRIRDELLGDEVKRRIELGAYALSAGYSGAYYLKAQK 341
Query: 385 IRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFT---VAVNMA 441
+R L++R+F FE+ +DV+L+PTTPT A LG+ ++ + FT V N+A
Sbjct: 342 VRRLLRREFAGLFEE-LDVLLSPTTPTPAPRLGEAADSPTVL--YNLLDFTANTVPANLA 398
Query: 442 GLPAISVPAALCEKKMPLGLQLIGQPFREETL 473
GLPAIS+PA E +P+GLQ+IG P +ETL
Sbjct: 399 GLPAISLPAGFSEDGLPVGLQIIGPPGDDETL 430
>gnl|CDD|36425 KOG1211, KOG1211, KOG1211, Amidases [Translation, ribosomal
structure and biogenesis].
Length = 506
Score = 377 bits (969), Expect = e-105
Identities = 200/484 (41%), Positives = 279/484 (57%), Gaps = 16/484 (3%)
Query: 16 LRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDAR-DLEGI 74
L S +++ +++SY++ I NA I V+ ++A AEE +R NG + L+G+
Sbjct: 27 LSSGLLTSKRIIESYLERINKWKPL-NAKITVINEEALKQAEEVTRRRKNGMEKGPLQGV 85
Query: 75 PIGIKDCFATKGIHTQAC-SHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDEFAMGSSN 133
PI IKD F TK T S +L+ + P ++TV +KL + GA++LGK NMDEFAMGSS
Sbjct: 86 PIAIKDNFDTKDKPTTTAASWMLEHYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSG 145
Query: 134 ETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQPASFTGT 193
E S+YG +P + PGGSS GS+AAVA LC ++GTDTGGS+R PA++ G
Sbjct: 146 ENSHYGTTRNPL-----SLWRVPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGV 200
Query: 194 VGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPDY 253
VG KPTYGR SR G+I + SLD GI RTV D+ +L AI G DE D+T + P P
Sbjct: 201 VGFKPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFP 260
Query: 254 ---ERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPHTQYA 310
E + G+ +GIPKE + LS + W++ L GAK+ E+SLP T
Sbjct: 261 IVLELIGSMDLSGLRIGIPKERLVQGLSSGVLSLWEELADLLGSLGAKVNEVSLPTTING 320
Query: 311 LPAYYIISPAEASSNLARYDGVRYGLRVEGKDILE-MYENTRSIGFGQEVKHRIMIGTYV 369
L Y + S +EA+SNLARYDG+ YG R + K E +Y +RS GF EVK RI+ G Y+
Sbjct: 321 LCGYSLSSASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYI 380
Query: 370 LSSRCYDSHYLRARKIRTLIKRDFTE--AFEQGVDVILTPTTPTSAFPLGKEENNSGSMG 427
L+ ++ +A ++R LI+ DF A +GVD ++TPT P + E +
Sbjct: 381 LAKENDQDYFEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYRE--FEKETLFAV 438
Query: 428 HIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGYF 487
+D+FT N+AGLPAIS+P L +P+GLQ++G F E TL + I + Y
Sbjct: 439 STLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLIDLALAIGQAKFYL 498
Query: 488 RPHK 491
P K
Sbjct: 499 GPDK 502
>gnl|CDD|36426 KOG1212, KOG1212, KOG1212, Amidases [Translation, ribosomal
structure and biogenesis, Lipid transport and
metabolism, Signal transduction mechanisms].
Length = 560
Score = 184 bits (467), Expect = 7e-47
Identities = 116/532 (21%), Positives = 207/532 (38%), Gaps = 73/532 (13%)
Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
+ +E L+S ++++VE++ +Y N ++N +E + + A AA D+
Sbjct: 55 LDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPL 114
Query: 67 DARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYE-STVTQKLWDNGAVMLGKLNM 124
+ L G+P +K+ + KG + + +P S + + L GA+ N+
Sbjct: 115 YEKPPLYGVPFSVKESISVKG-YDSTAGLLARTNQPATTDSVIVEFLKKLGAIPFVLTNV 173
Query: 125 DEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSI 184
+ + YG +P+ TPGGSSGG +A + IG+D GGSI
Sbjct: 174 PQSLLSYETSNPVYGTTKNPYDL-----SRTPGGSSGGEAALLGAGGSLLGIGSDIGGSI 228
Query: 185 RQPASFTGTVGIKPTYGRCSRLGIISFAP----SLDQAGIITRTVRDSAILLKAIAG--- 237
R PA+F G G+KPT GR S G P + G +TR V D +LL+ + G
Sbjct: 229 RIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSG 288
Query: 238 YDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGA 297
D V + + +S + +G + SP + + Q+ I L+ AG
Sbjct: 289 PKLLDPYPVPVK---FMEVFYKSSDKLVIGYYVDDGFFDPSPAMQRAVQETIDLLEKAGH 345
Query: 298 KIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQ 357
++V LP ++ ++ + P D Y + DI + N F +
Sbjct: 346 EVVPFDLPDLKHVADMFFRVMP----------DDGDYISEMYLLDIGDPTLNLFVK-FVE 394
Query: 358 EVKHRI--MIGTYVLSSRC----YDSHYLRARKIRTLIK--RDFTEAFEQ--GVDVILTP 407
K + + +Y++ C +S R+ I+ R + DV++ P
Sbjct: 395 LPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNYEDIESYRLKFILYWLLGKDDVLICP 454
Query: 408 TTPTSAFPLGKEENNSGSMGHIYNDVFTVAV-NMAGLPAISVPAALCEKK---------- 456
+ PT A P + N + N+ PA VP +K
Sbjct: 455 SFPTPAPPH-------NYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPMN 507
Query: 457 ----------------MPLGLQLIGQPFREETLFSVGQIIEKEAGYFRPHKW 492
+P+G+Q++ P ++E +V + +E++ G +
Sbjct: 508 DKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGWVRPGP 559
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes.
This superfamily (also known as the C-N hydrolase
superfamily) contains hydrolases that break
carbon-nitrogen bonds; it includes nitrilases, cyanide
dihydratases, aliphatic amidases, N-terminal amidases,
beta-ureidopropionases, biotinidases, pantotheinase,
N-carbamyl-D-amino acid amidohydrolases, the glutaminase
domain of glutamine-dependent NAD+ synthetase,
apolipoprotein N-acyltransferases, and
N-carbamoylputrescine amidohydrolases, among others.
These enzymes depend on a Glu-Lys-Cys catalytic triad,
and work through a thiol acylenzyme intermediate.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer. These oligomers include dimers, tetramers,
hexamers, octamers, tetradecamers, octadecamers, as well
as variable length helical arrangements and
homo-oligomeric spirals. These proteins have roles in
vitamin and co-enzyme metabolism, in detoxifying small
molecules, in the synthesis of signaling molecules, and
in the post-translational modification of proteins. They
are used industrially, as biocatalysts in the fine
chemical and pharmaceutical industry, in cyanide
remediation, and in the treatment of toxic effluent.
This superfamily has been classified previously in the
literature, based on global and structure-based sequence
analysis, into thirteen different enzyme classes
(referred to as 1-13). This hierarchy includes those
thirteen classes and a few additional subfamilies. A
putative distant relative, the plasmid-borne TraB
family, has not been included in the hierarchy.
Length = 253
Score = 30.0 bits (68), Expect = 1.4
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 22/74 (29%)
Query: 374 CYDSHYLRARKIRTLIKRDFTEAF----EQGVDVILTPT-TPTSAFPLGKEENNSGSMGH 428
CYD F E +G D+IL P PT+ + + +
Sbjct: 143 CYDLR--------------FPELARELALKGADIILVPAAWPTARREHWELLLRARA--- 185
Query: 429 IYNDVFTVAVNMAG 442
I N V+ VA N G
Sbjct: 186 IENGVYVVAANRVG 199
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 28.5 bits (63), Expect = 4.2
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 11 ESRDRLRSKDISAVELVDSYIQAIENSNSQMNA---YIEVVAQKARAAAEESDKRIINGD 67
++ K E Y +EN+++ + Y + Q +AEE ++ N D
Sbjct: 155 HAKSDFLRKSNPNAERTFGYADCLENTSNFKSFIEWYEHFILQLISPSAEEKEQISQNLD 214
Query: 68 ARDLEGIPIGIKDCFATKGIHTQ 90
+ + + I + ++ +
Sbjct: 215 SEFIARLQDAINENISSTSWNDL 237
>gnl|CDD|33141 COG3332, COG3332, Uncharacterized conserved protein [Function
unknown].
Length = 270
Score = 28.1 bits (62), Expect = 6.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 366 GTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVIL 405
G Y LS+ DS + + +K R + E E + I+
Sbjct: 145 GYYGLSNGFLDSPWPKVKKARAALAELLAENIEHDEEKII 184
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 27.9 bits (62), Expect = 6.2
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 216 DQAGIITRTVRDSAILLKAIAGYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLD 275
++ G++ R + LLK +AG E D+ V P L Q +Y ++
Sbjct: 30 ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIE 89
>gnl|CDD|107291 cd06296, PBP1_CatR_like, Ligand-binding domain of a LacI-like
transcriptional regulator, CatR which is involved in
catechol degradation. This group includes the
ligand-binding domain of a LacI-like transcriptional
regulator, CatR which is involved in catechol
degradation. This group belongs to the the LacI-GalR
family repressors that are composed of two functional
domains: an N-terminal HTH (helix-turn-helix) domain,
which is responsible for the DNA-binding specificity,
and a C-terminal ligand-binding domain, which is
homologous to the sugar-binding domain of ABC-type
transport systems that contain the type I periplasmic
binding protein-like fold. As also observed in the
periplasmic binding proteins, the C-terminal domain of
the bacterial transcription repressor undergoes a
conformational change upon ligand binding which in turn
changes the DNA binding affinity of the repressor.
Length = 270
Score = 28.0 bits (63), Expect = 7.0
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 302 ISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEG 340
+ L H + +I P + + AR DG R L G
Sbjct: 113 LELGHRRIG----FITGPPDLLCSRARLDGYRAALAEAG 147
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT,
glutaminase) domain of glutamine-dependent NAD
synthetases (class 7 and 8 nitrilases).
Glutamine-dependent NAD synthetases are bifunctional
enzymes, which have an N-terminal GAT domain and a
C-terminal NAD+ synthetase domain. The GAT domain is a
glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to
L-glutamate and ammonia. The ammonia is used by the NAD+
synthetase domain in the ATP-dependent amidation of
nicotinic acid adenine dinucleotide. Glutamine
aminotransferases are categorized depending on their
active site residues into different unrelated classes.
This class of GAT domain belongs to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to classes 7 and 8. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Mycobacterium tuberculosis glutamine-dependent NAD+
synthetase forms a homooctamer.
Length = 261
Score = 27.8 bits (63), Expect = 7.0
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 382 ARKIRTLIKRDFTEAFEQGVDVILTP 407
A KI I+ EA QG D+++ P
Sbjct: 18 AEKILEAIR----EAKAQGADLVVFP 39
>gnl|CDD|36337 KOG1121, KOG1121, KOG1121, Tam3-transposase (Ac family)
[Replication, recombination and repair].
Length = 641
Score = 27.9 bits (61), Expect = 7.0
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 349 NTRSIGFGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPT 408
N+ + + +K + + Y S+ R DF + F + ++ +
Sbjct: 333 NSTYLMLSRALKLKDAFSKLEEEDKSYKSYPSDEEWNRLEELCDFLQPFSEVTKLLSGSS 392
Query: 409 TPTSA--FP-LGKEENNSGSMGHIYNDVF-TVAVNMA 441
PTS FP + K EN + ++V ++A M
Sbjct: 393 YPTSNQYFPEIWKIENLLKTYASGEDEVVRSMAEEMF 429
>gnl|CDD|29985 cd00984, DnaB_C, DnaB helicase C terminal domain. The hexameric
helicase DnaB unwinds the DNA duplex at the chromosome
replication fork. Although the mechanism by which DnaB
both couples ATP hydrolysis to translocation along DNA
and denatures the duplex is unknown, a change in the
quaternary structure of the protein involving
dimerization of the N-terminal domain has been observed
and may occur during the enzymatic cycle. This
C-terminal domain contains an ATP-binding site and is
therefore probably the site of ATP hydrolysis..
Length = 242
Score = 27.4 bits (61), Expect = 8.5
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 22/85 (25%)
Query: 10 SESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEV--------------------VA 49
S +R + + + ++D Y+Q + S + N EV ++
Sbjct: 113 SRARRLKKEHGLGLI-VID-YLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALS 170
Query: 50 QKARAAAEESDKRIINGDARDLEGI 74
Q +R +DKR + D R+ I
Sbjct: 171 QLSRGVESRADKRPMLSDLRESGSI 195
>gnl|CDD|36475 KOG1261, KOG1261, KOG1261, Malate synthase [Energy production and
conversion].
Length = 552
Score = 27.3 bits (60), Expect = 8.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 429 IYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQL 463
++NDVF VA + G+P ++ A + + +P Q+
Sbjct: 234 LWNDVFCVAEDKIGIPRGTIRATVLIETLPAAFQM 268
>gnl|CDD|37915 KOG2704, KOG2704, KOG2704, Predicted membrane protein [Function
unknown].
Length = 480
Score = 27.2 bits (60), Expect = 10.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 14 DRLRSKDISAVELVDSYIQAIENSNSQMNAYI 45
DR+ + DI VEL S + ++N N Q N ++
Sbjct: 303 DRVSNVDILKVELATSVKEMLDNWNIQTNKWL 334
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,910,207
Number of extensions: 314931
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 18
Length of query: 493
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 395
Effective length of database: 4,146,055
Effective search space: 1637691725
Effective search space used: 1637691725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)