RPSBLAST alignment of GI: 254780978 and protein with PDBid: 3kfu
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471
Score = 449 bits (1156), Expect = e-127
Identities = 190/482 (39%), Positives = 287/482 (59%), Gaps = 20/482 (4%)
Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
M E R R+ ++S +E+ +Y++ ++ + + A++ + + AE D
Sbjct: 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNER-LLEEAEAVDPG---- 55
Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126
L G+ + +KD AT+G+ T A S +L+ F P YE+T +L GA++LGK N+DE
Sbjct: 56 --LPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDE 113
Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186
F MGSS E S + P +P+ PGGSSGGS+AA+A L ++G+DTGGS+RQ
Sbjct: 114 FGMGSSTEHSAFFPTKNPFD-----PDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQ 168
Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246
PA+F G G+KPTYGR SR G+I++A SLDQ G + R+VRD A+L+ A AG D DAT +
Sbjct: 169 PAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228
Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306
+LP P ++ AL+ + + +G+ +E L SP +++ ++ + ++ G + E+S P
Sbjct: 229 DLP-PRFQEALEGPLPPLRLGVVREA-LAGNSPGVERALEEALKVFRELGLSVREVSWPS 286
Query: 307 TQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIG 366
AL AYYI++PAEASSNLARYDG YG R G+++ M E TR++ FG EVK R+++G
Sbjct: 287 LPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRAL-FGLEVKRRVLVG 345
Query: 367 TYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSM 426
T+VLSS Y+++Y RA+ R +K + F + VD++L PTTP AFP G + +
Sbjct: 346 TFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE-VDLLLLPTTPHPAFPFGARRD---PL 401
Query: 427 GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGY 486
D++TV N+ GLPA+S PA E +P+GLQL+ +E L E+
Sbjct: 402 AMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEEATAR 460
Query: 487 FR 488
Sbjct: 461 AH 462