RPSBLAST alignment of GI: 254780978 and protein with PDBid: 3kfu

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471
 Score =  449 bits (1156), Expect = e-127
 Identities = 190/482 (39%), Positives = 287/482 (59%), Gaps = 20/482 (4%)

Query: 7   MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
           M   E R R+   ++S +E+  +Y++ ++  +  + A++ +  +     AE  D      
Sbjct: 1   MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNER-LLEEAEAVDPG---- 55

Query: 67  DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126
               L G+ + +KD  AT+G+ T A S +L+ F P YE+T   +L   GA++LGK N+DE
Sbjct: 56  --LPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDE 113

Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186
           F MGSS E S + P  +P+          PGGSSGGS+AA+A  L   ++G+DTGGS+RQ
Sbjct: 114 FGMGSSTEHSAFFPTKNPFD-----PDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQ 168

Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246
           PA+F G  G+KPTYGR SR G+I++A SLDQ G + R+VRD A+L+ A AG D  DAT +
Sbjct: 169 PAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228

Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306
           +LP P ++ AL+  +  + +G+ +E  L   SP +++  ++ +   ++ G  + E+S P 
Sbjct: 229 DLP-PRFQEALEGPLPPLRLGVVREA-LAGNSPGVERALEEALKVFRELGLSVREVSWPS 286

Query: 307 TQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIG 366
              AL AYYI++PAEASSNLARYDG  YG R  G+++  M E TR++ FG EVK R+++G
Sbjct: 287 LPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRAL-FGLEVKRRVLVG 345

Query: 367 TYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSM 426
           T+VLSS  Y+++Y RA+  R  +K +    F + VD++L PTTP  AFP G   +    +
Sbjct: 346 TFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE-VDLLLLPTTPHPAFPFGARRD---PL 401

Query: 427 GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEKEAGY 486
                D++TV  N+ GLPA+S PA   E  +P+GLQL+     +E L       E+    
Sbjct: 402 AMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEEATAR 460

Query: 487 FR 488
             
Sbjct: 461 AH 462