RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA
amidotransferase subunit A [Candidatus Liberibacter asiaticus str.
psy62]
(493 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 438 bits (1126), Expect = e-124
Identities = 216/492 (43%), Positives = 315/492 (64%), Gaps = 12/492 (2%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
MS + + +V ++ K I ++V AIE ++ + +++ + + A A+E D
Sbjct: 1 MS-IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD 59
Query: 61 KRIINGDARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVML 119
+ L GIP+GIKD T G+ T S +L+GF P YESTV +KL AV++
Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLI 119
Query: 120 GKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTD 179
GKLNMDEFAMG S ETSY+ ++P+ K PGGSSGGS+AAVA L S+G+D
Sbjct: 120 GKLNMDEFAMGGSTETSYFKKTVNPFD-----HKAVPGGSSGGSAAAVAAGLVPLSLGSD 174
Query: 180 TGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYD 239
TGGSIRQPA++ G VG+KPTYGR SR G+++FA SLDQ G +TR V+D+AI+L+AI+G D
Sbjct: 175 TGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGAD 234
Query: 240 ECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKI 299
D+T + D+ + + I+G+ V +PKEY + ++ + + Q + LK GA +
Sbjct: 235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVV 294
Query: 300 VEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRV-EGKDILEMYENTRSIGFGQE 358
E+SLP+T++ +P+YY+I+ +EASSNL+R+DG+RYG E + E+Y+ +RS GFG+E
Sbjct: 295 EEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKE 354
Query: 359 VKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGK 418
VK RI +GT+ LSS YD++Y +++K+RTLIK DF + FE DV++ PT PT+AF LG+
Sbjct: 355 VKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN-YDVVVGPTAPTTAFNLGE 413
Query: 419 EENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQ 478
E ++ +M ND+ T VN+AGLP ISVP P+GLQ IG+PF E+TL+ V
Sbjct: 414 EIDDPLTMYA--NDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQFIGKPFDEKTLYRVAY 470
Query: 479 IIEKEAGYFRPH 490
E + +
Sbjct: 471 QYETQYNLHDVY 482
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 385 bits (990), Expect = e-108
Identities = 190/492 (38%), Positives = 298/492 (60%), Gaps = 24/492 (4%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
M +L+F ++ + L+ + +L ++ I+ + + A+I V +
Sbjct: 1 MIDLDFRKLT-IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK---- 55
Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120
GIP+ IKD T G+ T S IL+ + +++TV +K+ + G V++G
Sbjct: 56 --------GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVG 107
Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180
K N+DEFAMGSS E S + + PGGSSGGS+AAV+ + A++G+DT
Sbjct: 108 KANLDEFAMGSSTERSAF-----FPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 162
Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240
GGS+RQPAS G VG KPTYG SR G+++FA SLDQ G IT+TVRD+AIL++ I+G DE
Sbjct: 163 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE 222
Query: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300
DAT VN D+ +++ + GM +P+E + + + +++ + L+ GAK+
Sbjct: 223 NDATTVN-RKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVE 281
Query: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360
+ +PH +Y++ YY+I+PAEASSNLAR+DGV+YGLR++ K + EMY TR++GFG+EV+
Sbjct: 282 RVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVR 341
Query: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420
RIMIGT+ LS+ Y++++ +A K+R I + E Q D ILTPT+P +AF +G+ +
Sbjct: 342 RRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQ-YDAILTPTSPVTAFKIGEIK 400
Query: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480
+ + + D+FT+ N+AGLPAISVP +P+G+Q+IG+ F + +F + + I
Sbjct: 401 D---PLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAI 456
Query: 481 EKEAGYFRPHKW 492
EK + Y +
Sbjct: 457 EKNSPYNENGMF 468
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 251 bits (640), Expect = 1e-67
Identities = 96/523 (18%), Positives = 186/523 (35%), Gaps = 64/523 (12%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
L + + + +L+S ++S + +Y+ N N + ++
Sbjct: 35 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR 94
Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120
+ + L G+P+ +K+CF+ KG + + +G + V Q L GAV
Sbjct: 95 QGL-------LYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 147
Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180
N+ + + + +PGGSSGG A + +GTD
Sbjct: 148 HTNVPQSMLSFDCSNPLF-----GQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 202
Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISF----APSLDQAGIITRTVRDSAILLKAIA 236
GGSIR P++F G G+KPT R S+ G+ G + R V A+ LKA+
Sbjct: 203 GGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALL 262
Query: 237 GYDECDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAG 296
P+P E + +S + + VG + SP + + + L+ AG
Sbjct: 263 CEHLFTLDPTVPPLPFREE-VYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAG 321
Query: 297 AKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFG 356
++ + YAL ++S S+ R + + ++ R +
Sbjct: 322 HTLIPFLPNNIPYALE---VLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWF 378
Query: 357 QEVKHRIMIGTYVLSSRCYDSH-------YLRARKIRTLIKRDFTEAFEQ-GVDVILTPT 408
+ + ++ + + +S + + + ++ ++ +DV+LTP
Sbjct: 379 KRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM 438
Query: 409 TPTSAFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKK------------ 456
A L +G++ +TV N PA VP +
Sbjct: 439 LGP-ALDLNTPGRATGAIS------YTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYF 491
Query: 457 -----------------MPLGLQLIGQPFREETLFSVGQIIEK 482
+P+ +Q + P++EE + +E+
Sbjct: 492 GDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQ 534
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 243 bits (620), Expect = 2e-65
Identities = 135/500 (27%), Positives = 222/500 (44%), Gaps = 24/500 (4%)
Query: 3 ELNFMAVSESRDRLRSKDISAVELVDSY---IQAIENSNSQMNAYIEVVAQKARAAAEES 59
V++ + R+ + ++ + L +Y I A++ + ++ A IE+ A A E
Sbjct: 3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAER 61
Query: 60 DKRIINGDARD-LEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVM 118
D+ +G R L GIP+ +KD + T A S L GFRP ++ + ++L D GAV+
Sbjct: 62 DRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVV 120
Query: 119 LGKLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGT 178
LGK N+ E+A N++ +P GSS GS+ AVA L + +IGT
Sbjct: 121 LGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGT 180
Query: 179 DTGGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGY 238
+T GSI PA+ G VG+KPT G SR GII + S D AG + R+V D+A +L AIAG
Sbjct: 181 ETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGR 240
Query: 239 DECDATCVNL---PVPDYERALD-QSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKD 294
D+ D + V DY LD Q ++G +G+ + L Y + +Q + L+
Sbjct: 241 DDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKY--RGMPPLIEQAATELRR 298
Query: 295 AGAKIVEISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIG 354
AGA +V + LP+ A + E + L RY D++ S
Sbjct: 299 AGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFN-QAHSKQ 357
Query: 355 FGQEVKHRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAF--EQGVDVILTPTTPTS 412
+++ + ++ R L + +A +D ++ PTT +
Sbjct: 358 ELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVA 417
Query: 413 AFPLGKEENNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREET 472
+ ++ G A +AG P+++VP + +P+GL +G + E
Sbjct: 418 WPIRSEGDDFPGES--------YSAAAVAGYPSLTVPMGQID-GLPVGLLFMGTAWSEPK 468
Query: 473 LFSVGQIIEKEAGYFRPHKW 492
L + E+ RP +
Sbjct: 469 LIEMAYAYEQRTRARRPPHF 488
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 194 bits (492), Expect = 2e-50
Identities = 99/476 (20%), Positives = 182/476 (38%), Gaps = 69/476 (14%)
Query: 7 MAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIING 66
+++++ + R+ + ++S + AIE +++A++ DK
Sbjct: 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRH------------DKSARAQ 49
Query: 67 DARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLGKLNMDE 126
+ L GI +GIKD T + T+ S I G++P ++ V L GA ++GK
Sbjct: 50 ASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTA 109
Query: 127 FAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDTGGSIRQ 186
FA +PGGSS GS+AAV + ++GT TGGS+ +
Sbjct: 110 FASR-----------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIR 158
Query: 187 PASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDECDATCV 246
PA++ GT IKP++ +G+ ++ +LD G+ D A L A+ G E
Sbjct: 159 PAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIV- 217
Query: 247 NLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIVEISLPH 306
+ +G+ ++ + P ++ Q I + AGA + I LP
Sbjct: 218 -------------PAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPE 264
Query: 307 TQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVKHRIMIG 366
+ + I + ++ + ++
Sbjct: 265 AVHEAWRIHPIIQDFEAHRALAWE----------------------FSEHHDEIAPMLRA 302
Query: 367 TYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSM 426
+ + Y AR+I +R+ E FE GVDV+LT + P +A
Sbjct: 303 SLDATVGLTPKEYDEARRIGRRGRRELGEVFE-GVDVLLTYSAPGTAPAKALASTG---- 357
Query: 427 GHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQIIEK 482
+ + + G P ++VP L +P+G+Q+I + + + +E
Sbjct: 358 ----DPRYNRLWTLMGNPCVNVP-VLKVGGLPIGVQVIARFGNDAHALATAWFLED 408
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 26.9 bits (58), Expect = 4.4
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 251 PDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGIS 290
R + +Q TV + +DK W+ +S
Sbjct: 125 VGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKIWRDAMS 164
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 25.9 bits (56), Expect = 6.7
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 279 PTIDKTWQQGISWLKDAGAKIVEISLPHT 307
P + T + + L GA ++E+ +P +
Sbjct: 28 PDLATTAEA-LRLLDGCGADVIELGVPCS 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,842,345
Number of extensions: 87731
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 9
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)