BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus Liberibacter asiaticus str. psy62] (493 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/493 (100%), Positives = 493/493 (100%) Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD Sbjct: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60 Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG Sbjct: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120 Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT Sbjct: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180 Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE Sbjct: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240 Query: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV Sbjct: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300 Query: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK Sbjct: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360 Query: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE Sbjct: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420 Query: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII Sbjct: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480 Query: 481 EKEAGYFRPHKWW 493 EKEAGYFRPHKWW Sbjct: 481 EKEAGYFRPHKWW 493 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 26.9 bits (58), Expect = 0.68, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 18/25 (72%) Query: 211 FAPSLDQAGIITRTVRDSAILLKAI 235 F P +D+ G+ TR++R+ ++K+I Sbjct: 185 FGPGMDKLGVATRSIREMLDIIKSI 209 >gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 12/23 (52%) Query: 283 KTWQQGISWLKDAGAKIVEISLP 305 K W+Q WLKD + VE P Sbjct: 15 KNWEQAAKWLKDNRIEDVECITP 37 >gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62] Length = 120 Score = 25.4 bits (54), Expect = 2.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 21 ISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARD 70 I ++ +V + ++ Y+E Q+ + A E+S+ R++ G D Sbjct: 29 IESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMD 78 >gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 198 PTYGRCSRLGIISFAPSLDQAG 219 PT R +RLGIIS P L +A Sbjct: 168 PTSVRLTRLGIISTPPILKEAA 189 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 9/43 (20%) Query: 428 HIYNDVFTVAVNMAG--------LPAISVPAALCEKKMPLGLQ 462 H ++D TVA++MAG L +S +K+M GLQ Sbjct: 176 HTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMG-GLQ 217 >gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 23.9 bits (50), Expect = 6.8, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 393 FTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFT 435 EA E G+ VIL +P + + + + GS ++D+ T Sbjct: 40 LKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIIT 82 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.134 0.397 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 312,849 Number of Sequences: 1233 Number of extensions: 13148 Number of successful extensions: 35 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 9 length of query: 493 length of database: 328,796 effective HSP length: 78 effective length of query: 415 effective length of database: 232,622 effective search space: 96538130 effective search space used: 96538130 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)