BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA
amidotransferase subunit A [Candidatus Liberibacter asiaticus str.
psy62]
(493 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
Liberibacter asiaticus str. psy62]
Length = 493
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/493 (100%), Positives = 493/493 (100%)
Query: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD
Sbjct: 1 MSELNFMAVSESRDRLRSKDISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESD 60
Query: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120
KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG
Sbjct: 61 KRIINGDARDLEGIPIGIKDCFATKGIHTQACSHILDGFRPHYESTVTQKLWDNGAVMLG 120
Query: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180
KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT
Sbjct: 121 KLNMDEFAMGSSNETSYYGPVISPWRSMDSTDKFTPGGSSGGSSAAVAGFLCAASIGTDT 180
Query: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240
GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE
Sbjct: 181 GGSIRQPASFTGTVGIKPTYGRCSRLGIISFAPSLDQAGIITRTVRDSAILLKAIAGYDE 240
Query: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300
CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV
Sbjct: 241 CDATCVNLPVPDYERALDQSIQGMTVGIPKEYRLDYLSPTIDKTWQQGISWLKDAGAKIV 300
Query: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360
EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK
Sbjct: 301 EISLPHTQYALPAYYIISPAEASSNLARYDGVRYGLRVEGKDILEMYENTRSIGFGQEVK 360
Query: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420
HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE
Sbjct: 361 HRIMIGTYVLSSRCYDSHYLRARKIRTLIKRDFTEAFEQGVDVILTPTTPTSAFPLGKEE 420
Query: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480
NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII
Sbjct: 421 NNSGSMGHIYNDVFTVAVNMAGLPAISVPAALCEKKMPLGLQLIGQPFREETLFSVGQII 480
Query: 481 EKEAGYFRPHKWW 493
EKEAGYFRPHKWW
Sbjct: 481 EKEAGYFRPHKWW 493
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 26.9 bits (58), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 211 FAPSLDQAGIITRTVRDSAILLKAI 235
F P +D+ G+ TR++R+ ++K+I
Sbjct: 185 FGPGMDKLGVATRSIREMLDIIKSI 209
>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 461
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 283 KTWQQGISWLKDAGAKIVEISLP 305
K W+Q WLKD + VE P
Sbjct: 15 KNWEQAAKWLKDNRIEDVECITP 37
>gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 120
Score = 25.4 bits (54), Expect = 2.2, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 21 ISAVELVDSYIQAIENSNSQMNAYIEVVAQKARAAAEESDKRIINGDARD 70
I ++ +V + ++ Y+E Q+ + A E+S+ R++ G D
Sbjct: 29 IESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMD 78
>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 281
Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 198 PTYGRCSRLGIISFAPSLDQAG 219
PT R +RLGIIS P L +A
Sbjct: 168 PTSVRLTRLGIISTPPILKEAA 189
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 428 HIYNDVFTVAVNMAG--------LPAISVPAALCEKKMPLGLQ 462
H ++D TVA++MAG L +S +K+M GLQ
Sbjct: 176 HTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMG-GLQ 217
>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 23.9 bits (50), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 393 FTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFT 435
EA E G+ VIL +P + + + + GS ++D+ T
Sbjct: 40 LKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIIT 82
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,849
Number of Sequences: 1233
Number of extensions: 13148
Number of successful extensions: 35
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 9
length of query: 493
length of database: 328,796
effective HSP length: 78
effective length of query: 415
effective length of database: 232,622
effective search space: 96538130
effective search space used: 96538130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)