HHsearch alignment for GI: 254780979 and conserved domain: COG2511
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=712.19 Aligned_cols=444 Identities=33% Similarity=0.532 Sum_probs=397.2
Q ss_pred CCC---EEEEEEEEEEECCCCCCCCCCCCCCCC-C-------------------------------------CCCCCCHH
Q ss_conf 803---389899978886898655588424689-8-------------------------------------76520613
Q gi|254780979|r 21 DWE---VVIGIEVHAQLSVVSKLFSGASVNFGA-E-------------------------------------PNTQVSFF 59 (500)
Q Consensus 21 ~~e---~vIGLEiH~qL~t~tKlFc~c~~~~~~-~-------------------------------------pNt~v~~~ 59 (500)
T Consensus 5 dy~~lgLKvGLEIHqQLdT~~KLFC~Cpt~~~~~E~~~~f~R~Lrpt~SElGevD~AA~~E~~r~R~f~Y~~~~d~tCLV 84 (631)
T COG2511 5 DYEELGLKVGLEIHQQLDTKRKLFCRCPTELRDGEPDFEFERYLRPTRSELGEVDPAALEESKRGRKFIYEAYYDTTCLV 84 (631)
T ss_pred CHHHHCCEECEEEHHHHCCCCCEECCCCCCCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHCCEEEEEECCCCCEEE
T ss_conf 76774640000201001677643336986445687674167763453666355478889998756668998137863565
Q ss_pred HCC-CCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf 026-8988873789999999998778297624420131132123767888201445442015338999706777774103
Q gi|254780979|r 60 DAA-MPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT 138 (500)
Q Consensus 60 ~~g-~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~ 138 (500)
T Consensus 85 E~DEEPP--h~~neeAl~iAl~Va~lln~~iVDei~vMRKiVIDGSNTsGFQRTai---va~~G~iets~g--------- 150 (631)
T COG2511 85 EADEEPP--HEPNEEALAIALAVAKLLNMDIVDEIHVMRKIVIDGSNTSGFQRTAI---VAIGGYIETSEG--------- 150 (631)
T ss_pred ECCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCEEEEE---EEECCEEECCCC---------
T ss_conf 5478999--99898999999999998389740104677788861687755112578---851765535888---------
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf 79842366652023100115678714886615786125763036527789999999999999864204567643220112
Q gi|254780979|r 139 IEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRA 218 (500)
Q Consensus 139 ~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~ 218 (500)
T Consensus 151 -~V~I~tlclEEDAARKIee~~~~V-vYsLDRLGIPLiEIsT~PdI~sp~~A~evA~~IG~~lrsTGkvKrgl--gTIRQ 226 (631)
T COG2511 151 -PVGIETLCLEEDAARKIEEKGDTV-VYSLDRLGIPLIEISTEPDIRSPEQAREVAERIGYILRSTGKVKRGL--GTIRQ 226 (631)
T ss_pred -CCCCEEEEECHHHHHHHHCCCCEE-EEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCEEE
T ss_conf -756413662377766654058738-99721368744884268888997999999999879999835512367--64000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q ss_conf 57543213766678862223540246599999999999999731------------------------------------
Q gi|254780979|r 219 DVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILE------------------------------------ 262 (500)
Q Consensus 219 DvNVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~------------------------------------ 262 (500)
T Consensus 227 DvNvSI-----~~GarvEIKGVq~LdlI~~vv~yEv~RQ~nLlkirdeL~~RG~~~~~~~~~DVTdlF~~TkSkiI~~~l 301 (631)
T COG2511 227 DVNVSI-----KGGARVEIKGVQDLDLIPDVVEYEVERQLNLLKIRDELKERGGADVSEEVFDVTDLFANTKSKIIRSGL 301 (631)
T ss_pred EEEEEE-----CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf 002553-----387168862740566678999999999988999999999735530014445289886557318888754
Q ss_pred -CCC----------------------------------------------------------------------------
Q ss_conf -398----------------------------------------------------------------------------
Q gi|254780979|r 263 -DGG---------------------------------------------------------------------------- 265 (500)
Q Consensus 263 -~G~---------------------------------------------------------------------------- 265 (500)
T Consensus 302 ~~gG~V~A~~l~~f~GlvG~EiqpGrRlGtE~AD~ar~~GvgGlfHsDELP~YGITeeEV~~v~~~lga~~~Davvlva~ 381 (631)
T COG2511 302 KKGGKVYAVLLPGFAGLVGREIQPGRRLGTEFADYARAYGVGGLFHSDELPGYGITEEEVEAVRDALGAGEEDAVVLVAG 381 (631)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 24876999974775652230025774103578999998277751005667567879999999999847997774899707
Q ss_pred ---------------------CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf ---------------------00344323375543366530356677778332778773126999999988530248368
Q gi|254780979|r 266 ---------------------HIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDA 324 (500)
Q Consensus 266 ---------------------~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~ 324 (500)
T Consensus 382 ~~~~~~~a~~~V~~Ra~~ai~gvpeETR~a~~D-GtT~yLRPlPGaa--RMYPETDIPpi~i~~~~l~~~~~~~Pe~~~e 458 (631)
T COG2511 382 EEERAKRALEAVIERAKEAIEGVPEETRGALPD-GTTVYLRPLPGAA--RMYPETDIPPIRIDEELLEKIKENLPELPEE 458 (631)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC-CCCEEECCCCCCC--CCCCCCCCCCEECCHHHHHHHHHHCCCCHHH
T ss_conf 788999999999999999871797766357889-8703515799854--5687678997205889987766437878799
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9886432026889998887641136789886402-430245777765457887643387400064898999999988863
Q gi|254780979|r 325 KRERFIGEFGISLYDASVLVSDKSIADYFEKLAV-NRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIID 403 (500)
Q Consensus 325 ~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~-~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~ 403 (500)
T Consensus 459 k~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~~v~p~~~A~~L~~~~~-~L~reg~~i~--~l~~~~i~~~~~~~~~ 534 (631)
T COG2511 459 KVERYVKEYGLSKELAEQLASDPRV-DLFEELVEKGVDPTLIASTLVNTLP-ELRREGVEID--NLDDEHIEELLRLVSE 534 (631)
T ss_pred HHHHHHHHHCCCHHHHHHHHHCHHH-HHHHHHHHCCCCHHHHHHHHHHHHH-HHHHCCCCCC--CCCHHHHHHHHHHHHC
T ss_conf 9999999849779999999742048-9999999747877899999998779-9985687466--6667999999999862
Q ss_pred CCCCHHHHHHHHHHHHHC-CCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 873147899999999817-9998899996398761898899999999998399989975272132265899999972897
Q gi|254780979|r 404 GTISGKIAKDIFNILWEK-GGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGK 482 (500)
Q Consensus 404 g~Is~~~aK~il~~l~~~-~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~tkGk 482 (500)
T Consensus 535 g~iake~iee~l~~l~~~p~~~~~~~~~~~gL~~ls-~eEve~iI~eii~~~~d~i~~rg--~~a~g~lmg~~M~~~rg~ 611 (631)
T COG2511 535 GKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELS-EEEVEKIIDEIIESNLDVIKERG--MGAMGLLMGRVMAKLRGR 611 (631)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHCC
T ss_conf 520099999999999848898999999872633279-99999999999974378998712--226899999999986065
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 788999999999707
Q gi|254780979|r 483 ANPSIVQKMLKEKLG 497 (500)
Q Consensus 483 Adpk~v~~lL~e~L~ 497 (500)
T Consensus 612 aDgk~v~e~l~~~i~ 626 (631)
T COG2511 612 ADGKLVSEILREKLQ 626 (631)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 780899999999999