HHsearch alignment for GI: 254780979 and conserved domain: COG2511

>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=712.19  Aligned_cols=444  Identities=33%  Similarity=0.532  Sum_probs=397.2

Q ss_pred             CCC---EEEEEEEEEEECCCCCCCCCCCCCCCC-C-------------------------------------CCCCCCHH
Q ss_conf             803---389899978886898655588424689-8-------------------------------------76520613
Q gi|254780979|r   21 DWE---VVIGIEVHAQLSVVSKLFSGASVNFGA-E-------------------------------------PNTQVSFF   59 (500)
Q Consensus        21 ~~e---~vIGLEiH~qL~t~tKlFc~c~~~~~~-~-------------------------------------pNt~v~~~   59 (500)
T Consensus         5 dy~~lgLKvGLEIHqQLdT~~KLFC~Cpt~~~~~E~~~~f~R~Lrpt~SElGevD~AA~~E~~r~R~f~Y~~~~d~tCLV   84 (631)
T COG2511           5 DYEELGLKVGLEIHQQLDTKRKLFCRCPTELRDGEPDFEFERYLRPTRSELGEVDPAALEESKRGRKFIYEAYYDTTCLV   84 (631)
T ss_pred             CHHHHCCEECEEEHHHHCCCCCEECCCCCCCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHCCEEEEEECCCCCEEE
T ss_conf             76774640000201001677643336986445687674167763453666355478889998756668998137863565


Q ss_pred             HCC-CCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf             026-8988873789999999998778297624420131132123767888201445442015338999706777774103
Q gi|254780979|r   60 DAA-MPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT  138 (500)
Q Consensus        60 ~~g-~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~  138 (500)
T Consensus        85 E~DEEPP--h~~neeAl~iAl~Va~lln~~iVDei~vMRKiVIDGSNTsGFQRTai---va~~G~iets~g---------  150 (631)
T COG2511          85 EADEEPP--HEPNEEALAIALAVAKLLNMDIVDEIHVMRKIVIDGSNTSGFQRTAI---VAIGGYIETSEG---------  150 (631)
T ss_pred             ECCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCEEEEE---EEECCEEECCCC---------
T ss_conf             5478999--99898999999999998389740104677788861687755112578---851765535888---------


Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf             79842366652023100115678714886615786125763036527789999999999999864204567643220112
Q gi|254780979|r  139 IEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRA  218 (500)
Q Consensus       139 ~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~  218 (500)
T Consensus       151 -~V~I~tlclEEDAARKIee~~~~V-vYsLDRLGIPLiEIsT~PdI~sp~~A~evA~~IG~~lrsTGkvKrgl--gTIRQ  226 (631)
T COG2511         151 -PVGIETLCLEEDAARKIEEKGDTV-VYSLDRLGIPLIEISTEPDIRSPEQAREVAERIGYILRSTGKVKRGL--GTIRQ  226 (631)
T ss_pred             -CCCCEEEEECHHHHHHHHCCCCEE-EEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCEEE
T ss_conf             -756413662377766654058738-99721368744884268888997999999999879999835512367--64000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q ss_conf             57543213766678862223540246599999999999999731------------------------------------
Q gi|254780979|r  219 DVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILE------------------------------------  262 (500)
Q Consensus       219 DvNVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~------------------------------------  262 (500)
T Consensus       227 DvNvSI-----~~GarvEIKGVq~LdlI~~vv~yEv~RQ~nLlkirdeL~~RG~~~~~~~~~DVTdlF~~TkSkiI~~~l  301 (631)
T COG2511         227 DVNVSI-----KGGARVEIKGVQDLDLIPDVVEYEVERQLNLLKIRDELKERGGADVSEEVFDVTDLFANTKSKIIRSGL  301 (631)
T ss_pred             EEEEEE-----CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf             002553-----387168862740566678999999999988999999999735530014445289886557318888754


Q ss_pred             -CCC----------------------------------------------------------------------------
Q ss_conf             -398----------------------------------------------------------------------------
Q gi|254780979|r  263 -DGG----------------------------------------------------------------------------  265 (500)
Q Consensus       263 -~G~----------------------------------------------------------------------------  265 (500)
T Consensus       302 ~~gG~V~A~~l~~f~GlvG~EiqpGrRlGtE~AD~ar~~GvgGlfHsDELP~YGITeeEV~~v~~~lga~~~Davvlva~  381 (631)
T COG2511         302 KKGGKVYAVLLPGFAGLVGREIQPGRRLGTEFADYARAYGVGGLFHSDELPGYGITEEEVEAVRDALGAGEEDAVVLVAG  381 (631)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             24876999974775652230025774103578999998277751005667567879999999999847997774899707


Q ss_pred             ---------------------CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf             ---------------------00344323375543366530356677778332778773126999999988530248368
Q gi|254780979|r  266 ---------------------HIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDA  324 (500)
Q Consensus       266 ---------------------~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~  324 (500)
T Consensus       382 ~~~~~~~a~~~V~~Ra~~ai~gvpeETR~a~~D-GtT~yLRPlPGaa--RMYPETDIPpi~i~~~~l~~~~~~~Pe~~~e  458 (631)
T COG2511         382 EEERAKRALEAVIERAKEAIEGVPEETRGALPD-GTTVYLRPLPGAA--RMYPETDIPPIRIDEELLEKIKENLPELPEE  458 (631)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC-CCCEEECCCCCCC--CCCCCCCCCCEECCHHHHHHHHHHCCCCHHH
T ss_conf             788999999999999999871797766357889-8703515799854--5687678997205889987766437878799


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9886432026889998887641136789886402-430245777765457887643387400064898999999988863
Q gi|254780979|r  325 KRERFIGEFGISLYDASVLVSDKSIADYFEKLAV-NRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIID  403 (500)
Q Consensus       325 ~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~~-~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~  403 (500)
T Consensus       459 k~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~~v~p~~~A~~L~~~~~-~L~reg~~i~--~l~~~~i~~~~~~~~~  534 (631)
T COG2511         459 KVERYVKEYGLSKELAEQLASDPRV-DLFEELVEKGVDPTLIASTLVNTLP-ELRREGVEID--NLDDEHIEELLRLVSE  534 (631)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCHHH-HHHHHHHHCCCCHHHHHHHHHHHHH-HHHHCCCCCC--CCCHHHHHHHHHHHHC
T ss_conf             9999999849779999999742048-9999999747877899999998779-9985687466--6667999999999862


Q ss_pred             CCCCHHHHHHHHHHHHHC-CCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf             873147899999999817-9998899996398761898899999999998399989975272132265899999972897
Q gi|254780979|r  404 GTISGKIAKDIFNILWEK-GGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGK  482 (500)
Q Consensus       404 g~Is~~~aK~il~~l~~~-~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~kgk~ka~gfLvGqVMK~tkGk  482 (500)
T Consensus       535 g~iake~iee~l~~l~~~p~~~~~~~~~~~gL~~ls-~eEve~iI~eii~~~~d~i~~rg--~~a~g~lmg~~M~~~rg~  611 (631)
T COG2511         535 GKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELS-EEEVEKIIDEIIESNLDVIKERG--MGAMGLLMGRVMAKLRGR  611 (631)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHCC
T ss_conf             520099999999999848898999999872633279-99999999999974378998712--226899999999986065


Q ss_pred             CCHHHHHHHHHHHHC
Q ss_conf             788999999999707
Q gi|254780979|r  483 ANPSIVQKMLKEKLG  497 (500)
Q Consensus       483 Adpk~v~~lL~e~L~  497 (500)
T Consensus       612 aDgk~v~e~l~~~i~  626 (631)
T COG2511         612 ADGKLVSEILREKLQ  626 (631)
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             780899999999999