HHsearch alignment for GI: 254780979 and conserved domain: smart00845
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=100.00 E-value=4.1e-34 Score=271.72 Aligned_cols=145 Identities=51% Similarity=0.866 Sum_probs=139.9
Q ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 988640-2430245777765457887643387400064898999999988863873147899999999817999889999
Q gi|254780979|r 352 YFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVE 430 (500)
Q Consensus 352 ~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~l~~~~~~p~~iie 430 (500)
T Consensus 1 ~Fe~~~~~~~~~k~~anwi~~el~~~ln~~~~~i~~~~i~~~~la~li~lv~~g~Is~~~ak~il~~~~~~~~~~~~ii~ 80 (147)
T smart00845 1 YFEEVVKAGADPKLAANWLLGELLGELNKEGLEIEESPITPEHLAELLKLIEDGTISGKIAKEVLEELLESGKSPEEIVE 80 (147)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 96889770799999999999999999847799856378799999999999986997589899999999873688899998
Q ss_pred HCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 63987618988999999999983999899752-7213226589999997289778899999999970
Q gi|254780979|r 431 ELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496 (500)
Q Consensus 431 ~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L 496 (500)
T Consensus 81 ~~gl~~isd~~~l~~lv~~ii~~n~~~v~~~~~Gk~k~~~~lvGqvMK~tkGkadp~~v~~ll~e~L 147 (147)
T smart00845 81 EKGLKQISDEGELEAIVDEVIAENPKAVEDYRAGKKKALGFLVGQVMKATRGKADPKLVNELLKEKL 147 (147)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 8297546883899999999999899999999877488899999999998679989999999999659