HHsearch alignment of GI: 254780979 and MMDB domain: 1zq1_C_1-280_408-456
>1zq1_C (C:1-280,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi}
Probab=100.00 E-value=0 Score=778.37 Aligned_cols=279 Identities=27% Similarity=0.395 Sum_probs=265.1
Q ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC----CCCCCHHHCCC----CCCCCCC------------------
Q ss_conf 454780338989997888689865558842468987----65206130268----9888737------------------
Q gi|254780979|r 17 GTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEP----NTQVSFFDAAM----PGMLPIL------------------ 70 (500)
Q Consensus 17 ~~~~~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~p----Nt~v~~~~~g~----PG~lP~l------------------ 70 (500)
-+.++|+++|||||||||+|+ ||||+|+++|+++| |+++||+|.++ ||+||++
T Consensus 8 ~~~~~~~~~iGLEIH~QL~T~-KLFc~c~t~~~~~p~~~~n~~~~p~~s~l~~~~Pgalp~~~~~~~~~y~~~~~~tclv 86 (329)
T 1zq1_C 8 FNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLV 86 (329)
T ss_dssp SCTTTTTCCBEEEEEEEBSSB-CTTSSCBCCCCSCCCEEEEECCCCCEETTSCBCHHHHHHHHTTCEEEEEECTTTCBGG
T ss_pred CCHHHHCCEEEEEEEEEECCC-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCC
T ss_conf 598996967879999877774-0378998767777654456777873013466786424666421000002454310001
Q ss_pred ----------CHHHHHHHHHHHHHHCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf ----------8999999999877829762442013113212376788820144544201533899970677777410379
Q gi|254780979|r 71 ----------NGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140 (500)
Q Consensus 71 ----------N~~av~~ai~~~~al~~~i~~~~~fdRK~YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~ 140 (500)
|++||++|+++|+||||+|+++++||||||||||||+||||||+ ||.||+++++. ++
T Consensus 87 e~Deepp~~~N~~Av~~ai~~a~aLn~~i~~~~~f~RK~yfy~dlp~GyQiTq~---ia~~G~i~~~~----------~~ 153 (329)
T 1zq1_C 87 YMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVETPW----------GA 153 (329)
T ss_dssp GTTSSCCCCCCHHHHHHHHHHHHHTTCEECSEECCEEEECSSSSSTTSEEEECE---EEEEEEECCTT----------CC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEE---EECCCEEECCC----------CC
T ss_conf 245567776689999999999998089845356562047778887667761027---63783896136----------75
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 84236665202310011567871488661578612576303652778999999999999986420456764322011257
Q gi|254780979|r 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADV 220 (500)
Q Consensus 141 v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~Dv 220 (500)
|+|.+|||||||||++|+. +++|++||||||+|||||||+|||+||+||++|+++|+++|||+|+|+. ++|+|||||
T Consensus 154 I~I~~I~LEEDaak~ih~~-~~~~l~DlNR~GiPLiEIvTePdi~speeA~~~~~~l~~llr~~g~~~~--~~GsiR~Dv 230 (329)
T 1zq1_C 154 VGIPTICLEEDAARIIERK-DKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKR--GLGTIRQDL 230 (329)
T ss_dssp EEEEEEEEEECCCEEEEEE-TTEEEEESTTTTCEEEEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBCC--SSTTEEEEE
T ss_pred CCCEEEEEECCCCCCCCCC-CCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
T ss_conf 3512576544667623579-9954785045787148986168877989999999999999999974567--787322566
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCEEEEEECCCCCCCC
Q ss_conf 54321376667886222354024659999999999999973139800344323375-------54336653035667777
Q gi|254780979|r 221 NVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDP-------SKNETRSLRTKEDALDY 293 (500)
Q Consensus 221 NVSi~~~~~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll~~G~~v~qETR~~d~-------~~~~T~~mR~KE~a~DY 293 (500)
|||| .+|+||||||||||++|++||+||+.||.++|+.|+++.||||+||+ ..|.|.+||+.++++
T Consensus 231 NVSi-----~~G~RvEIKNvnS~~~I~~aI~~E~~RQ~~lLe~g~~i~~eTr~~dp~etr~a~~~g~t~~~rp~pg~a-- 303 (329)
T 1zq1_C 231 NVSI-----KGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKPEETRRALPDGNTEYMRPLPGKA-- 303 (329)
T ss_dssp EECC-----TTSCCEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGCCCEEEECTTSCEEEEECCCCCC--
T ss_pred CCCC-----CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCCCC--
T ss_conf 7556-----898467511343478899999999999999997000233213555563010347889875400001346--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 83327787731269999999885302
Q gi|254780979|r 294 RYFSEPDLLPLEIDEDFIRAIKKQIP 319 (500)
Q Consensus 294 RyfPEPDLPpi~is~e~i~~i~~~lP 319 (500)
|||||+|+||+.|++++++.+++.+|
T Consensus 304 rmypetd~~~~~~~~~~~~~~~~~~p 329 (329)
T 1zq1_C 304 RMYPETDIPPLRIPDDLKKKIKENLP 329 (329)
T ss_dssp CEEECTTSCCEECCHHHHHHHHTSCC
T ss_pred CCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 76899998887458999999998642