HHsearch results for GI: 254780979 and protein with PDBid: 3al0_B
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=1291.56 Aligned_cols=473 Identities=43% Similarity=0.730 Sum_probs=457.7
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCC-CCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCC
Q ss_conf 803389899978886898655588424-6898765206130268988873789999999998778297624420131132
Q gi|254780979|r 21 DWEVVIGIEVHAQLSVVSKLFSGASVN-FGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKN 99 (500)
Q Consensus 21 ~~e~vIGLEiH~qL~t~tKlFc~c~~~-~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~ 99 (500)
+|++||||||||||+|+|||||+|+++ |+++|||+|||||+|+||+||++|++||++|+++|+||||+|+++++|||||
T Consensus 2 ~~~~viGLEiH~qL~T~~KlFc~c~~~~~~~~pn~~~~~v~~~~pg~lP~ln~~av~~a~~~~~al~~~i~~~~~f~RK~ 81 (482)
T 3al0_B 2 RYRPVIGLEIHVQLSTKTKAFCSCPADVFELPPNTAICPVCTGQPGALPVPNEEMIRFAVKTALALNCKIHKYSRFDRKN 81 (482)
T ss_dssp CSCCCCEEEEEEECCCSBCSSSSSBSCCTTCCTTSSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCCBCSEECCEEEE
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 96348999987771799776789988656889845527153159998777799999999999998298425464412111
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCC----CCCEEEEECCCCCCE
Q ss_conf 1237678882014454420153389997067777741037984236665202310011567----871488661578612
Q gi|254780979|r 100 YFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQY----SAVSCIDLNRSGVAL 175 (500)
Q Consensus 100 YfYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~----~~~slvD~NRaGvPL 175 (500)
||||||||||||||++.|||.||++++....+ .++|+|.||||||||||++|+.. +++|++||||||+||
T Consensus 82 y~y~d~p~gyQiTq~~~pi~~~G~i~~~~~~~------~~~v~I~~i~lEEDa~k~~~~~~~~~~~~~sl~d~nR~GiPL 155 (482)
T 3al0_B 82 YFYPDLPKGYQISQYFYPIATEGFLEIDGDEG------RKKVRIRRLHLEEDAGKLVHEGDSITRASYSLVDMNRCGVPL 155 (482)
T ss_dssp CCBTTBTTSEEEECSSSCSBCCEEEEECCSSS------SEEEEEEEEEEECCCCEEEETTBSSSCCSEEEEEGGGTTCCE
T ss_pred CCCCCCCCHHHHHCCCCCCCCCCEEECCCCCC------CEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCE
T ss_conf 03799983263541601256476231247888------348806898752456623235666677863277214689864
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57630365277899999999999998642045676432201125754321376-66788622235402465999999999
Q gi|254780979|r 176 MEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEA 254 (500)
Q Consensus 176 iEIVT~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi 254 (500)
|||||+|||+||+||++|+++|++||||+|+|||+||+|+|||||||||++.| ..+||||||||+||||+|++||+||+
T Consensus 156 iEIvT~Pd~~s~eea~~~~~~l~~ilr~~g~~~~~me~G~~R~DvNvSv~~~~~~~~g~rvEIKNlnS~r~v~~Ai~~Ei 235 (482)
T 3al0_B 156 IEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERALEYEF 235 (482)
T ss_dssp EEEEECTTCCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEECCCCSSSCSSCCCCCCCCCCCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 79982389888899999999999999973823467544405403453353046656655032568786889999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 99999731398003443233755433665303566777783327787731269999999885302483689886432026
Q gi|254780979|r 255 RRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFG 334 (500)
Q Consensus 255 ~RQ~~ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yG 334 (500)
.||++++++|+.|.||||+||+.++.|++||+||++.||||||||||||+.|+++||++++++|||||+++++||+++||
T Consensus 236 ~RQ~~~l~~G~~v~qeTr~~d~~~~~T~~~R~Ke~a~dYRyfPEpDLPpi~i~~e~ie~i~~~LPelP~~~~~rl~~~yg 315 (482)
T 3al0_B 236 ERIVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSDEYLEEVKKELPELPDEKAERFMREYG 315 (482)
T ss_dssp HTTSSSSSSSCCCCCCCCEEETTTTEEECCSSCCCSCCCCCEECTTSCCEECCHHHHTTSSSSSCCCTTHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 99998875487410002233155543675214555564466667887863059999999998689986999999999809
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 88999888764113678988640-24302457777654578876433874000648989999999888638731478999
Q gi|254780979|r 335 ISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKD 413 (500)
Q Consensus 335 Ls~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~ 413 (500)
||+++|++|++++.+++||+++. ...+|+.++||+++++++.||+.+.++.+++++|++|++|+.++++|+||+++||+
T Consensus 316 Ls~~~a~~L~~~~~l~~~fe~~~~~~~~~k~aanwi~~el~~~ln~~~~~~~~~~i~~~~la~Li~li~~g~Is~~~aK~ 395 (482)
T 3al0_B 316 LPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKE 395 (482)
T ss_dssp CCHHHHHHHTSSHHHHHHHHHHHHHSCCHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHHHHHTTTSSCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 89999998873277788999999851778899999888889986241033323899999999999867548765899999
Q ss_pred HHHHHHHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999981799988999963987618988999999999983999899752-721322658999999728977889999999
Q gi|254780979|r 414 IFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKML 492 (500)
Q Consensus 414 il~~l~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL 492 (500)
+|+.|++++++|+++++++||.++||+++|+++|++||++||++|++|+ ||++++|||||||||+|||||||++|+++|
T Consensus 396 il~~l~~~~~~~~~iie~~gl~~isD~~ele~ii~evi~~np~~V~~~k~Gk~ka~g~LmGqVMK~tkGkadpk~v~eiL 475 (482)
T 3al0_B 396 IFPEVFETGKMPSQIVEEKGLTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANPELTNRII 475 (482)
T ss_dssp SHHHHHHHCCCHHHHHHHHTCCCCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHHHHHHHTTSSCSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999866999999999749961688899999999999979899999877518667479999999857997999999999
Q ss_pred HHHHCCC
Q ss_conf 9970788
Q gi|254780979|r 493 KEKLGIK 499 (500)
Q Consensus 493 ~e~L~~k 499 (500)
+++|.-+
T Consensus 476 ~~~L~~e 482 (482)
T 3al0_B 476 QKLLEGE 482 (482)
T ss_dssp HHHSSCC
T ss_pred HHHHCCC
T ss_conf 9987679