HHsearch results for GI: 254780979 and protein with PDBid: 3ip4_B
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, ATP-binding, nucleotide- binding; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=100.00 E-value=0 Score=1328.43 Aligned_cols=471 Identities=44% Similarity=0.758 Sum_probs=458.3
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCE
Q ss_conf 80338989997888689865558842468987652061302689888737899999999987782976244201311321
Q gi|254780979|r 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNY 100 (500)
Q Consensus 21 ~~e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~Y 100 (500)
+||+||||||||||+|+|||||+|+++|+++|||+|||||+|+|||||+||++||++|+++|+||||+|+++++||||||
T Consensus 2 ~~~~viGlEiH~qL~t~~KlF~~~~~~~~~~pN~~v~~~~~~~pG~lP~lN~~av~~a~~~~~al~~~i~~~~~fdRK~y 81 (483)
T 3ip4_B 2 HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNY 81 (483)
T ss_dssp CEEEEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEEC
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCEECCCCC
T ss_conf 96158899998882899676789998678998767686122699987656999999999999984985341024344444
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 23767888201445442015338999706777774103798423666520231001156787148866157861257630
Q gi|254780979|r 101 FYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVT 180 (500)
Q Consensus 101 fYpDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT 180 (500)
|||||||||||||++.|||.||+|++.++.. .++|+|.||||||||||++|+ +++|++||||||+|||||||
T Consensus 82 fypdlp~gyQiTq~~~pi~~~G~i~~~~~~~------~k~i~I~~i~lEEDagk~~~~--~~~~~~D~NR~GvPLiEIvT 153 (483)
T 3ip4_B 82 FYPDNPKAYQISQFDQPIGENGYIDIEVDGE------TKRIGITRLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVS 153 (483)
T ss_dssp CBTTBTTSEEEECSSSCSEEEEEEEECSSSS------CEEEEEEEEEEEECCCEEEEE--TTEEEEECTTTTCEEEEEEE
T ss_pred CCCCCCHHHHHHCCCCCCCCCEEEEEECCCC------CEEECCCEEEEEECCCCCCCC--CCCEEEECCCCCCCEEEEEC
T ss_conf 4898981354642766678750780112786------128650248872135755568--99607843578986579970
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3652778999999999999986420456764322011257543213766-678862223540246599999999999999
Q gi|254780979|r 181 KPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGE-AWGTRCEVKNVNSIRFLGLAIEYEARRQIA 259 (500)
Q Consensus 181 ~Pd~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~~-~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ 259 (500)
+|||+||+||++|+++||+||||+|+|||+||+|+||||||||||+.|. .|||||||||||||++|++||+||+.||++
T Consensus 154 ~Pd~~s~~ea~~~~~~l~~ilr~~gv~~~~me~GsiR~DvNVSi~~~g~~~~G~RvEIKNlnS~~~I~~AI~~Ei~RQ~~ 233 (483)
T 3ip4_B 154 EPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEE 233 (483)
T ss_dssp CSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 59977899999999999999997176556644565435540332678887776358874477838999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 73139800344323375543366530356677778332778773126999999988530248368988643202688999
Q gi|254780979|r 260 ILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYD 339 (500)
Q Consensus 260 ll~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lPelP~~~~~rl~~~yGLs~~d 339 (500)
+|++|+.|.||||+||+.+++|++||+||+++||||||||||||+.|+++||+.++.+|||||+++++||+++|||+.++
T Consensus 234 ~le~G~~v~qeTR~~d~~~~~T~~mR~Ke~a~DYRy~PEpDLppi~I~~e~ie~ik~~lPeLP~~~~~rl~~~~gl~~~~ 313 (483)
T 3ip4_B 234 ELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYD 313 (483)
T ss_dssp HHHHTCCCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHHHHTTCCCCHHHHHHHHHHTSCCCHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 98669971243412355443466313567653245667888787658899999999868999799999999870999899
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 888764113678988640-2430245777765457887643387400064898999999988863873147899999999
Q gi|254780979|r 340 ASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNIL 418 (500)
Q Consensus 340 A~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi~li~~g~Is~~~aK~il~~l 418 (500)
|.+|+.++.+++||+++. .+.+|+.+|||+++++.+.+|+.+..+.+++++|++|++|+.++++|+||.++||++|..|
T Consensus 314 a~~l~~~~~l~~~fe~~~~~~~~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~Li~li~~g~Is~~~aK~il~~l 393 (483)
T 3ip4_B 314 AHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPEL 393 (483)
T ss_dssp HHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 88875218888888998861562789999999999999875267543379899999999999864974488999999999
Q ss_pred HHCCCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHCHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 81799988999963987618988999999999983999899752-72132265899999972897788999999999707
Q gi|254780979|r 419 WEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIA-TKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKLG 497 (500)
Q Consensus 419 ~~~~~~p~~iie~~gL~~isD~~eL~~iv~eVI~~np~~V~~~k-gk~ka~gfLvGqVMK~tkGkAdpk~v~~lL~e~L~ 497 (500)
+.++++|.++++++||.|+||+++|+++|++||++||++|++|+ ||++++|||||||||+|||||||+.|+++|+++|+
T Consensus 394 ~~~~~s~~eiiee~gl~qisDe~eLe~ii~eVi~~n~~~Ve~~k~Gk~ka~gfLmGqVMK~tkGkAdpk~v~elL~e~L~ 473 (483)
T 3ip4_B 394 AAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELD 473 (483)
T ss_dssp HHHCCCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 85699999999975996048999999999999997999999997565877867999999996798799999999999999
Q ss_pred CC
Q ss_conf 88
Q gi|254780979|r 498 IK 499 (500)
Q Consensus 498 ~k 499 (500)
-+
T Consensus 474 k~ 475 (483)
T 3ip4_B 474 KR 475 (483)
T ss_dssp HT
T ss_pred HH
T ss_conf 98