HHSEARCH alignment of GI: 254780979 and SCOP domain: d2f2ab1

Alignment
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.87  E-value=2.9e-22  Score=181.05  Aligned_cols=106  Identities=39%  Similarity=0.709  Sum_probs=101.7

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             48368988643202688999888764113678988640-24302457777654578876433874000648989999999
Q gi|254780979|r  320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELI  398 (500)
Q Consensus       320 elP~~~~~rl~~~yGLs~~dA~~L~~~~~la~~FE~v~-~~~~pk~~Anwi~~el~~~ln~~~~~~~~~~i~p~~laeLi  398 (500)
                      |||+++++||+++|||++++|.+|++++.+++|||+++ ...+||.+|||+++|+.++||+.+.++.+++++|++|++|+
T Consensus         1 ELP~~k~~R~~~~ygL~~~da~~L~~~~~l~~~FE~~~~~~~~~k~~aNwl~~el~~~ln~~~~~i~~~~i~~~~la~Li   80 (107)
T d2f2ab1           1 ELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMI   80 (107)
T ss_dssp             CCHHHHHHHHHHTTCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHHHTTTCCTTTSSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             98699999999983959999999980399999999999854788999999999899998753785216986999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf             888638731478999999998179998
Q gi|254780979|r  399 DLIIDGTISGKIAKDIFNILWEKGGTP  425 (500)
Q Consensus       399 ~li~~g~Is~~~aK~il~~l~~~~~~p  425 (500)
                      .|+++|+||+++||+||++|+++|+|.
T Consensus        81 ~lv~~g~Is~~~aK~vl~~~~~~g~dA  107 (107)
T d2f2ab1          81 KLIEDGTMSSKIAKKVFPELAAKGGNA  107 (107)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHTCSCS
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999759755789999999999708999


SCOP domain information

class: All alpha proteins
fold: GatB/YqeY motif
superfamily: GatB/YqeY motif
family: GatB/GatE C-terminal domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]