HHSEARCH alignment of GI: 254780979 and SCOP domain: d2f2ab2

Alignment
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00  E-value=0  Score=961.66  Aligned_cols=289  Identities=49%  Similarity=0.811  Sum_probs=281.2

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEEECCCEEC
Q ss_conf             33898999788868986555884246898765206130268988873789999999998778297624420131132123
Q gi|254780979|r   23 EVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFY  102 (500)
Q Consensus        23 e~vIGLEiH~qL~t~tKlFc~c~~~~~~~pNt~v~~~~~g~PG~lP~lN~~av~~ai~~~~al~~~i~~~~~fdRK~YfY  102 (500)
                      |+|||||||+||+|+|||||+|+++|+++|||+|||||+|+||+||++|++||++|+++|+||||+|+++++||||||||
T Consensus         1 E~vIGLEiH~QL~T~tKlFc~c~~~~~~~pNt~vc~v~lg~PG~lPvlN~~av~~Ai~~~lalnc~I~~~~~fdRK~YfY   80 (290)
T d2f2ab2           1 ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFY   80 (290)
T ss_dssp             CCEEEEEEEEECCCSBCSSSSSBSSCCSSTTCSCCTTTTTCTTCCCCCBHHHHHHHHHHHHHTTCEECSEECCEEEECCC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCEECCCCEEC
T ss_conf             98899998888289967778999867888645568602479986551579999999998887277113342311001004


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECC
Q ss_conf             76788820144544201533899970677777410379842366652023100115678714886615786125763036
Q gi|254780979|r  103 PDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKP  182 (500)
Q Consensus       103 pDlpkgyQiTQ~~~Pi~~~G~l~~~~~~~~~~~~~~~~v~I~~i~lEED~gk~~h~~~~~~slvD~NRaGvPLiEIVT~P  182 (500)
                      |||||||||||++.|||.||+|++..++      ..++|+|+||||||||||++|+  ++.|+|||||||+|||||||+|
T Consensus        81 pDlpkgyQiTQ~~~pi~~~G~l~~~~~~------~~k~i~I~rihlEEDagK~~h~--~~~slvD~NRaGvPLiEIVTeP  152 (290)
T d2f2ab2          81 PDNPKAYQISQFDQPIGENGYIDIEVDG------ETKRIGITRLHMEEDAGKSTHK--GEYSLVDLNRQGTPLIEIVSEP  152 (290)
T ss_dssp             TTCTTSEEEECSSSCSEEEEEEEEEETT------EEEEEEEEEEEEEECCCEEEEC--SSEEEEECSSTTCEEEEEEECT
T ss_pred             CCCCCCHHHHCCCCCCCCCCEEEEECCC------CCEEEEEEEEEEEECCCCCCCC--CCCCEEEECCCCCCEEEEECCC
T ss_conf             6676144452133630056379664188------6169855368886012414347--9851785045787325653168


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5277899999999999998642045676432201125754321376-667886222354024659999999999999973
Q gi|254780979|r  183 DMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIAIL  261 (500)
Q Consensus       183 d~~s~~ea~~~~~~l~~ilr~~gisd~~meeGslR~DvNVSi~~~~-~~~GtRvEIKNlnS~~~i~~AI~yEi~RQ~~ll  261 (500)
                      ||+||+||++|+++|++||||+|+|||+||+|||||||||||++.| +.||||||||||||||+|++||+||+.||+++|
T Consensus       153 d~~s~~eA~~~~~~L~~il~~lgvsd~~me~GslR~DvNVSi~~~g~~~~G~RvEIKNlnS~~~i~~aI~~Ei~RQ~~~l  232 (290)
T d2f2ab2         153 DIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEEL  232 (290)
T ss_dssp             TBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEECCCSSSCCCCCCCEEECCCCSTTTHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86898999999999999864157644443333111465146557876666645886142478899999999999999987


Q ss_pred             HCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             1398003443233755433665303566777783327787731269999999885302
Q gi|254780979|r  262 EDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP  319 (500)
Q Consensus       262 ~~G~~v~qETR~~d~~~~~T~~mR~KE~a~DYRyfPEPDLPpi~is~e~i~~i~~~lP  319 (500)
                      +.|++|.||||+||+.++.|++||+||+|+||||||||||||+.|+++||++++++||
T Consensus       233 ~~g~~i~qeTR~~d~~~~~T~~mRsKE~a~DYRYfPEPDLppi~i~~~~i~~ik~~lP  290 (290)
T d2f2ab2         233 LNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIP  290 (290)
T ss_dssp             TTTTCCCCCEEEEETTTTEEEEEECCCSCCCCCCEECTTSCCEECCHHHHHHHHTTCC
T ss_pred             HCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCC
T ss_conf             5399410004357567997964878887657687889997865559999999997495


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]