RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA
amidotransferase subunit B [Candidatus Liberibacter asiaticus str.
psy62]
(500 letters)
>gnl|CDD|180111 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated.
Length = 474
Score = 809 bits (2093), Expect = 0.0
Identities = 279/481 (58%), Positives = 349/481 (72%), Gaps = 11/481 (2%)
Query: 19 TGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQA 78
++EVVIG+EVH QL+ SK+FSG S +FGAEPNT V +PG LP+LN V+ A
Sbjct: 2 MMNFEVVIGLEVHVQLNTKSKIFSGCSTDFGAEPNTNVCPVCLGLPGALPVLNKEAVEYA 61
Query: 79 VMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT 138
+ GL LN I K S F RKNYFYPDLP+GYQISQ+D+PI G + + +G
Sbjct: 62 IKAGLALNCEIAKRSRFDRKNYFYPDLPKGYQISQYDEPIAENGYLEIELG--------E 113
Query: 139 IEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLR 198
+GIERIHLE+DAGKS+HDQ + S +D NR+GV L+EIV++PDMRS EA+A+L KLR
Sbjct: 114 KRIGIERIHLEEDAGKSVHDQGAGYSLVDYNRAGVPLIEIVSEPDMRSPEEARAYLKKLR 173
Query: 199 SILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQ 257
SILRYLG DGNMEEGS+R D NVSV G E +GTR E+KN+NS RF+ AIEYE RQ
Sbjct: 174 SILRYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTRVEIKNLNSFRFVEKAIEYEIERQ 233
Query: 258 IAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQ 317
I ILE GG + QETRLFD K ETRS+R+KE+A DYRYF EPDL PLEI +++I I+ +
Sbjct: 234 IEILESGGEVVQETRLFDEDKGETRSMRSKEEAHDYRYFPEPDLPPLEISDEWIEEIRAE 293
Query: 318 IPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEK-LAVNRDKKIVANWVINDLLGV 376
+PELPDAKR RF+ E+G+S YDA VL SDK +ADYFE +A D K+ ANW++ +LLG+
Sbjct: 294 LPELPDAKRARFVEEYGLSEYDARVLTSDKELADYFEAVVAAGADAKLAANWLMGELLGL 353
Query: 377 LNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQ 436
LN G IE++PI+P QL ELI LI DGTISGKIAK++F + E GG P EIVEE GL+Q
Sbjct: 354 LNEEGIEIEESPITPEQLAELIKLIDDGTISGKIAKEVFEEMLETGGDPDEIVEEKGLKQ 413
Query: 437 VTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEK 495
++D A+E +VDEV+ +NP V A K + + VGQVMK T GKANP +V ++LKEK
Sbjct: 414 ISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQVMKATKGKANPKLVNELLKEK 473
Query: 496 L 496
L
Sbjct: 474 L 474
>gnl|CDD|161729 TIGR00133, gatB, glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)
amidotransferase, B subunit. The heterotrimer GatABC is
responsible for transferring the NH2 group that converts
Glu to Gln, or Asp to Asn after the Glu or Asp has been
ligated to the tRNA for Gln or Asn, respectively. In
Lactobacillus, GatABC is responsible only for tRNA(Gln).
In the Archaea, GatABC is responsible only for
tRNA(Asn), while GatDE is responsible for tRNA(Gln). In
lineages that include Thermus, Chlamydia, or
Acidithiobacillus, the GatABC complex catalyzes both.
Length = 478
Score = 526 bits (1356), Expect = e-150
Identities = 232/482 (48%), Positives = 316/482 (65%), Gaps = 11/482 (2%)
Query: 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFG-AEPNTQVSFFDAAMPGMLPILNGRCVQQAV 79
++E IG+E+H QL+ +KLF +FG A PNT V +PG LP+LN V++A+
Sbjct: 3 EYEAKIGLEIHVQLNTKTKLFCSCPNSFGSAPPNTNVCPVCLGLPGALPVLNEEAVKKAI 62
Query: 80 MTGLGLNAHINK-YSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRT 138
L LN+ IN+ SVF RK+YFYPDLP+GYQI+Q D+PI GK+ + + +
Sbjct: 63 KLALALNSQINQPISVFDRKHYFYPDLPKGYQITQQDRPIAEGGKLEIELDGGEK----- 117
Query: 139 IEVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLR 198
+GIER+H+E+D GKS H S +D NRSG L+EIVTKPD+ S EA+AFL KLR
Sbjct: 118 -RIGIERVHMEEDTGKSQHFGSDVQSLVDFNRSGAPLIEIVTKPDINSPKEARAFLKKLR 176
Query: 199 SILRYLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQ 257
ILRYLG DGN+EEGSMR DVNVS+ G E GTR E+KN+NS + + AI+YE RQ
Sbjct: 177 QILRYLGISDGNLEEGSMRCDVNVSIRLKGQEHLGTRVEIKNINSFKGIEKAIKYEIERQ 236
Query: 258 IAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQ 317
+ L G + QETR FD N T S+R+KE ++DYRYF EPDL P+ IDE ++ + +
Sbjct: 237 VKALIRGEEVVQETRTFDEKSNITVSMRSKETSIDYRYFPEPDLPPINIDELLVKEVAGK 296
Query: 318 IPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLA-VNRDKKIVANWVINDLLGV 376
+PELP AKR R E+G+S DA VL SD ++ADYFE++ + D K+ ANW+ +LLGV
Sbjct: 297 LPELPSAKRIRLKKEYGLSEQDAKVLTSDLTLADYFEEVVKLIGDPKLAANWICIELLGV 356
Query: 377 LNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQ 436
LN+ S+ + + P+ L ELI LI +G ISGK AK + + E GG P +++EELGL Q
Sbjct: 357 LNKLQISLAECGLKPSDLAELIKLIKEGKISGKSAKQLIEEMLENGGDPSKLIEELGLEQ 416
Query: 437 VTDLSAIEKVVDEVINSNPNNV-ARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEK 495
++D + K+++EVI NP V ++ K + + VGQVMK T G+ANP +V ++LKE
Sbjct: 417 ISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQVMKRTRGRANPQLVNEILKEM 476
Query: 496 LG 497
L
Sbjct: 477 LS 478
>gnl|CDD|178352 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase.
Length = 544
Score = 488 bits (1257), Expect = e-138
Identities = 228/498 (45%), Positives = 317/498 (63%), Gaps = 15/498 (3%)
Query: 9 ARSESLTSGTTGDWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLP 68
+SE+L D+E VIGIE H QLS ++K F N+GAEPNT V +PG LP
Sbjct: 49 KKSEALDKIEQ-DFEAVIGIETHVQLSTLTKAFCSCPYNYGAEPNTTVCPVCMGLPGTLP 107
Query: 69 ILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSI 128
+LN + V++AV GL LN I+ S F RK YFYPDLP+GYQISQ D PI G V V +
Sbjct: 108 VLNSKVVEKAVKLGLALNCKISLKSKFDRKQYFYPDLPKGYQISQFDIPIAEGGYVDVDL 167
Query: 129 GPDKSGQFRTIEVGIERIHLEQDAGKSIH---DQYSA-VSCIDLNRSGVALMEIVTKPDM 184
+ G R GI R+H+E+DAGK +H YS + +DLNR+GV L+EIV++PDM
Sbjct: 168 PVEFGGGHRRF--GITRVHMEEDAGKLLHSGNGSYSQGSALVDLNRAGVPLLEIVSEPDM 225
Query: 185 RSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRP--GEAWGTRCEVKNVNS 242
R+ +EA + +L+ ++RYLG +GNM+EGS+R DVNVS+ RP E +GT+ E+KN+NS
Sbjct: 226 RTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSI-RPVGQEEFGTKVEIKNMNS 284
Query: 243 IRFLGLAIEYEARRQIAILEDG--GHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPD 300
+ AI++E RQI + G I QETRL+D +T ++R KE DYRYF EPD
Sbjct: 285 FSAMSRAIDFEISRQILLHRQGQGDEIVQETRLWDEGAQKTVTMRKKEGLADYRYFPEPD 344
Query: 301 LLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEK-LAVN 359
L + + E+++ +I+ +PELP+AKR R+ G+S+ D L +DK++A++F+ LA
Sbjct: 345 LPEVVLTEEYVDSIRASMPELPEAKRRRY-ENMGLSMQDVLFLANDKNVAEFFDATLAKG 403
Query: 360 RDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILW 419
D K+ ANW++ D+ L SI + ++P +L ELI I DGTISGKI K+I L
Sbjct: 404 ADAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELIASIKDGTISGKIGKEILPELL 463
Query: 420 EKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKN 478
KGGT K +VEE GL Q++D + IE +VD+V+ NP + + K L +F GQVMK
Sbjct: 464 AKGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQVMKA 523
Query: 479 TGGKANPSIVQKMLKEKL 496
+ GKANP ++ K+L EKL
Sbjct: 524 SKGKANPGLLNKILMEKL 541
>gnl|CDD|129078 smart00845, GatB_Yqey, GatB domain. This domain is found in GatB
and proteins related to bacterial Yqey. It is about 140
amino acid residues long. This domain is found at the C
terminus of GatB which transamidates Glu-tRNA to
Gln-tRNA. The function of this domain is uncertain. It
does however suggest that Yqey and its relatives have a
role in tRNA metabolism.
Length = 147
Score = 189 bits (483), Expect = 1e-48
Identities = 75/147 (51%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 352 YFEKLA-VNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKI 410
YFE++ D K+ ANW++ +LLG LN+ G IE++PI+P L EL+ LI DGTISGKI
Sbjct: 1 YFEEVVKAGADPKLAANWLLGELLGELNKEGLEIEESPITPEHLAELLKLIEDGTISGKI 60
Query: 411 AKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVS 469
AK++ L E G +P+EIVEE GL+Q++D +E +VDEVI NP V A K +
Sbjct: 61 AKEVLEELLESGKSPEEIVEEKGLKQISDEGELEAIVDEVIAENPKAVEDYRAGKKKALG 120
Query: 470 WFVGQVMKNTGGKANPSIVQKMLKEKL 496
+ VGQVMK T GKA+P +V ++LKEKL
Sbjct: 121 FLVGQVMKATRGKADPKLVNELLKEKL 147
>gnl|CDD|184797 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 163 bits (414), Expect = 1e-40
Identities = 76/190 (40%), Positives = 115/190 (60%), Gaps = 7/190 (3%)
Query: 313 AIKKQIPELPDAKR---ERFIGEFGISLYDASVLVSDKSIADYFEK-LAVNRDKKIVANW 368
+ + L +R +R++ E G++ DA L D ++A +FE LA + +ANW
Sbjct: 584 EARAEAAALNPEQRARFDRYLSELGLNEEDARTLARDPALAAFFEAALAAGKSPVQLANW 643
Query: 369 VINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEI 428
V+NDL G+L + + P +P L L+ L+ G IS +IAKD+ L GG P+ I
Sbjct: 644 VVNDLAGLLRD--RELAALPFTPAALARLVALVDAGRISTRIAKDVLAELAASGGDPEAI 701
Query: 429 VEELGLRQVTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSI 487
VE GL QV+D A+E +V+EV+ ++P+ VA A K L+ +FVGQVM+ TGGKANP
Sbjct: 702 VEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMRETGGKANPQQ 761
Query: 488 VQKMLKEKLG 497
V+++L++KLG
Sbjct: 762 VRELLQKKLG 771
>gnl|CDD|179718 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E;
Validated.
Length = 630
Score = 102 bits (257), Expect = 2e-22
Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 15/208 (7%)
Query: 294 RYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYF 353
R + E D+ P+ I E+ + IKK +PELP+ K ER I E+G+S A L + + D F
Sbjct: 427 RMYPETDIPPIRITEELLEKIKKNLPELPEEKVERLIKEYGLSEELAEQLAYSERL-DLF 485
Query: 354 EKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAK- 412
E+L + + + L L R G +E+ I+ + E+ L+ + GKIAK
Sbjct: 486 EELVKKGVDPTLIASTLENTLKELRREGVDVEN--ITDEHIEEVFKLVSE----GKIAKE 539
Query: 413 ---DIFNILWEKGG-TPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLV 468
+I L E G + +E EELGL+ +++ +EK++DE++ N + V
Sbjct: 540 AIEEILKELAENPGKSAEEAAEELGLKGLSE-EEVEKIIDEIVEENIDFVK--EKGMGAF 596
Query: 469 SWFVGQVMKNTGGKANPSIVQKMLKEKL 496
+G+VM GKA+ +V ++L+EKL
Sbjct: 597 GPLMGEVMAELRGKADGKLVSEILREKL 624
Score = 67.9 bits (167), Expect = 5e-12
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 22/136 (16%)
Query: 140 EVGIERIHLEQDAGKSIHD-----QYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFL 194
+VGIE I LE+DA + I + YS L+R G+ L+EI T PD+ S +AK
Sbjct: 151 KVGIETICLEEDAARKIEEKGDGVVYS------LDRLGIPLIEISTAPDIHSPEQAKEVA 204
Query: 195 TKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEA 254
K+ +LR G + G++R DVNVS+ A G R E+K V + + +EYE
Sbjct: 205 LKIGMLLRSTGKVKRGL--GTIRQDVNVSI-----AGGARVEIKGVQKLDLIPKVVEYEV 257
Query: 255 RRQIAILEDGGHIRQE 270
+RQ+ +L+ IR E
Sbjct: 258 QRQLNLLK----IRDE 269
>gnl|CDD|129240 TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotransferase, subunit
E. The Archaea have an Asp-tRNA(Asn) amidotransferase
instead of an Asp--tRNA ligase, but the genes have not
been identified. It is likely that this protein replaces
gatB in Asp-tRNA(Asn) amidotransferase but that both
enzymes share gatA.
Length = 620
Score = 76.5 bits (188), Expect = 2e-14
Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 269 QETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRER 328
+ETR N T+ LR A R + E D+ P I+++ + I++ +PELP+ K+ER
Sbjct: 398 EETRKALEDGN-TQYLRPLPGA--ARMYPETDIPPFRIEDELLEGIRRNLPELPEEKKER 454
Query: 329 FIGEFGISLYDASVLVSDKSIADYFEKLAVN-RDKKIVANWVINDLLGVLNRSGKSIEDT 387
+ E+G+S AS LV + D FE L R V ++ L L R G I+
Sbjct: 455 IMREYGLSEDLASQLV-KSNYVDEFEALTEKFRVDPTVIASLLAYTLRELRREGHDIDG- 512
Query: 388 PISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVV 447
+ L + I L+ G I+ + ++I + ++ ++ +L L+ + + IE ++
Sbjct: 513 -LELRHLRDAIKLLEVGKIAKEGLREILKCMCDEPLAAEDAARKLKLKLLAE-EEIESII 570
Query: 448 DEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496
E+I N + ++ + +GQ M GKA+ +V ++L++KL
Sbjct: 571 QEIIEENLDMISERGEGA--MGPLMGQAMGRLRGKADGKVVNRILRKKL 617
Score = 69.5 bits (170), Expect = 2e-12
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSI 200
VGIE + LE+DA + I D V L+R G+ L+EI T PD+ AK ++ I
Sbjct: 149 VGIENLCLEEDAARKIEDTGDGV-VYRLDRLGIPLVEITTDPDISDPQMAKEVAYRIGQI 207
Query: 201 LRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAI 260
LR G + G++R D+N+S+ G R EVK V + + +E E +RQ+ +
Sbjct: 208 LRSTGKVKRGL--GTIRQDLNISIRD-----GARVEVKGVQDLDLIPKIVEREVKRQLNL 260
Query: 261 LEDGGHIRQ-----ETRLFDPSK----NETRSLRTKEDAL 291
L+ +++ E ++FD ++ +++ + E
Sbjct: 261 LKIRDELQERGAVVEEKIFDVTEVFADTKSKIISNAESVK 300
>gnl|CDD|148274 pfam06570, DUF1129, Protein of unknown function (DUF1129). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 206
Score = 33.0 bits (76), Expect = 0.18
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 370 INDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIV 429
I L L ++GKS E+ L E++ I++G G A+ ++ GTP E
Sbjct: 10 IFILTKQLIQTGKSDEEIEE---ILEEMLPEILEGQKKGITARQLY-------GTPTEKA 59
Query: 430 EEL 432
E+
Sbjct: 60 AEI 62
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 30.3 bits (68), Expect = 1.1
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 4 LDTHVARSESLTSGTTGDWEVVIGIEVHAQLSVVS--KLFSGASVNFGAEPNTQVSFFDA 61
L +VA + +T G GI + VV+ +F+ V G P+ S++ +
Sbjct: 138 LKPNVAIMDGITMGCGA------GISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLS 191
Query: 62 AMPGMLP---ILNGRCVQQAVMTGLGLNAHINKYSVFAR 97
+PG L L G+ + M GL H Y + AR
Sbjct: 192 RLPGYLGEYLALTGQKLNGVEMIACGLATH---YCLNAR 227
>gnl|CDD|152771 pfam12336, SOXp, SOX transcription factor. This domain family is
found in eukaryotes, and is approximately 80 amino acids
in length. The family is found in association with
pfam00505. There are two conserved sequence motifs: KKDK
and LPG. This family is made up of SOX transcription
factors. These are involved in upregulation of nestin, a
neural promoter.
Length = 84
Score = 29.9 bits (67), Expect = 1.5
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 62 AMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKP 117
++PG L NG VQ+AV G+ AH+N Y N Y + Q Q+ P
Sbjct: 17 SLPGGLLPANGAPVQRAVGVGMDGYAHMNGYM-----NGAYS-MMQDDQLHYPQHP 66
>gnl|CDD|178482 PLN02894, PLN02894, hydrolase, alpha/beta fold family protein.
Length = 402
Score = 29.9 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 414 IFNILWEKGGTPKEIVEELG 433
+ N LWE TP++I+ LG
Sbjct: 234 VLNHLWESNFTPQKIIRGLG 253
>gnl|CDD|180474 PRK06214, PRK06214, sulfite reductase; Provisional.
Length = 530
Score = 29.3 bits (66), Expect = 2.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 174 ALMEIVTKPDMRSSLEAKAFLTKLRSILRY 203
AL++IV + RS EA AF+ +L+ RY
Sbjct: 496 ALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525
>gnl|CDD|117878 pfam09336, Vps4_C, Vps4 C terminal oligomerisation domain. This
domain is found at the C terminal of ATPase proteins
involved in vacuolar sorting. It forms an alpha helix
structure and is required for oligomerisation.
Length = 62
Score = 28.8 bits (65), Expect = 3.6
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 296 FSEPDLLPLEID-EDFIRAIKKQIPELPDA---KRERFIGEFG 334
E LL + +DFI+A+ P + K E F EFG
Sbjct: 20 IEEDKLLEPPLTMKDFIKALATTKPTVSKDDLEKHEEFTNEFG 62
>gnl|CDD|151032 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 28.0 bits (63), Expect = 6.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 19/63 (30%)
Query: 390 SP--NQLGELIDLIIDGTISGKIAKDI-FN-------------ILW--EKGGTPKEIVEE 431
SP N GEL+ L DG +A D F+ ILW +K +++E
Sbjct: 635 SPVLNGKGELVGLAFDGNWES-LAGDYLFDPELQRAIHVDIRYILWALDKVYGADHLLDE 693
Query: 432 LGL 434
LG+
Sbjct: 694 LGI 696
>gnl|CDD|177772 PLN00177, PLN00177, sulfite oxidase; Provisional.
Length = 393
Score = 27.9 bits (62), Expect = 6.7
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 104 DLP-QGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKS 155
D P Q S D + GKV+V+ G SG R GIER+ + D GK+
Sbjct: 263 DFPVQSAICSLEDVNAIKPGKVTVA-GYALSGGGR----GIERVDISVDGGKT 310
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 27.8 bits (62), Expect = 7.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 443 IEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSIVQKMLKEKL 496
IE V+EV N + + N V +GQV K A+P IV+K++ +KL
Sbjct: 124 IEAAVNEVFEENKEKILEQRYRTN-VGDLLGQVRKRLPW-ADPKIVKKLIDKKL 175
>gnl|CDD|148120 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 27.3 bits (61), Expect = 8.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 390 SPNQLGELIDLIIDG--------TISGKIAKDIFNIL 418
P+QL E ID IID I I+K +++
Sbjct: 1405 EPHQLAETIDTIIDQCVANGVPVEIVNAISKRTNSLI 1441
>gnl|CDD|181074 PRK07668, PRK07668, hypothetical protein; Validated.
Length = 254
Score = 27.3 bits (61), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 402 IDGTISGKIAKDIFNILWEKGGTPKEIVEEL 432
I+G GK +DIF G +PKE EL
Sbjct: 39 IEGEKDGKTVEDIF------GDSPKEYANEL 63
>gnl|CDD|162058 TIGR00834, ae, anion exchange protein. They preferentially
catalyze anion exchange (antiport) reactions, typically
acting as HCO3-:Cl- antiporters, but also transporting a
range of other inorganic and organic anions.
Additionally, renal Na+:HCO3- cotransporters have been
found to be members of the AE family. They catalyze the
reabsorption of HCO3- in the renal proximal tubule.
Length = 900
Score = 27.4 bits (61), Expect = 9.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 310 FIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIAD-YFEKLAVNRDKKIVA-- 366
F+R K P R R IG+FG+ + +++ D I D Y +KL+V K+
Sbjct: 577 FLRKFKNS-RYFPGKAR-RLIGDFGVPISILIMVLVDIFIGDTYTQKLSVPSGLKVTNPS 634
Query: 367 --NWVINDL 373
W I L
Sbjct: 635 ARGWFIPPL 643
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.136 0.387
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,286,519
Number of extensions: 558424
Number of successful extensions: 1164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1134
Number of HSP's successfully gapped: 37
Length of query: 500
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 403
Effective length of database: 3,898,497
Effective search space: 1571094291
Effective search space used: 1571094291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)