RPSBLAST alignment of GI: 254780979 and protein with PDBid: 2d6f

>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 619
 Score =  244 bits (625), Expect = 2e-65
 Identities = 61/249 (24%), Positives = 113/249 (45%), Gaps = 12/249 (4%)

Query: 248 LAIEYEARRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEID 307
            A+    RR          + +ETR   P  N       +      R + E D+    I+
Sbjct: 379 NALREVIRR---AEMAIQGVPEETRKALPDGNTQY---LRPLPTSSRMYLETDIPLFRIE 432

Query: 308 EDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVAN 367
           +D +  I++ +PELP  K+ER + ++G+S   AS LV    + D FE L   R    V  
Sbjct: 433 DDLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKRN-LVDEFEALTEFRVDTTVIA 491

Query: 368 WVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKE 427
            ++   L  L R G  ++   +  ++L + I L+  G IS    +DI   + ++G   ++
Sbjct: 492 SLLAYTLRELRREGHDVD--GLGLDELRDAIKLLEVGKISKDALRDIVACMADEGLAAED 549

Query: 428 IVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPSI 487
              +L L  + +   IE ++ E++  N + ++        +   +GQ M    G+A+  +
Sbjct: 550 AARKLNLLLLAE-DEIESIIQEIVEGNLDMISER--GMGAMGPLMGQAMGRLRGRADGKV 606

Query: 488 VQKMLKEKL 496
           V ++L+EK+
Sbjct: 607 VNRILREKI 615