RPSBLAST alignment of GI: 254780979 and protein with PDBid: 3al0

>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 482
 Score =  561 bits (1448), Expect = e-160
 Identities = 204/484 (42%), Positives = 296/484 (61%), Gaps = 14/484 (2%)

Query: 21  DWEVVIGIEVHAQLSVVSKLFSGASVN-FGAEPNTQVSFFDAAMPGMLPILNGRCVQQAV 79
            +  VIG+E+H QLS  +K F     + F   PNT +       PG LP+ N   ++ AV
Sbjct: 2   RYRPVIGLEIHVQLSTKTKAFCSCPADVFELPPNTAICPVCTGQPGALPVPNEEMIRFAV 61

Query: 80  MTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTI 139
            T L LN  I+KYS F RKNYFYPDLP+GYQISQ+  PI  EG + +     +       
Sbjct: 62  KTALALNCKIHKYSRFDRKNYFYPDLPKGYQISQYFYPIATEGFLEIDGDEGRK------ 115

Query: 140 EVGIERIHLEQDAGKSIHDQYSAV----SCIDLNRSGVALMEIVTKPDMRSSLEAKAFLT 195
           +V I R+HLE+DAGK +H+  S      S +D+NR GV L+EIVT+PD+ S  EA+ F+ 
Sbjct: 116 KVRIRRLHLEEDAGKLVHEGDSITRASYSLVDMNRCGVPLIEIVTEPDISSPREARVFME 175

Query: 196 KLRSILRYLGTCDGNMEEGSMRADVNVSV-CRPGEAWGTRCEVKNVNSIRFLGLAIEYEA 254
           KLRSI+RYLG   G+ME+G++R D N+SV          R EVKN+NS RF+  A+EYE 
Sbjct: 176 KLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERALEYEF 235

Query: 255 RRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAI 314
            R +  +E G  + +ETR +D +   T S+R KE+  DYRYF EPD+ P+ + ++++  +
Sbjct: 236 ERIVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSDEYLEEV 295

Query: 315 KKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFE-KLAVNRDKKIVANWVINDL 373
           KK++PELPD K ERF+ E+G+  YDA VL S K +A++FE  + V    K ++NW++ ++
Sbjct: 296 KKELPELPDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSNWIMTEV 355

Query: 374 LGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELG 433
           L  LN     I ++ ++P    +L  L+ +G IS KIAK+IF  ++E G  P +IVEE G
Sbjct: 356 LRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPSQIVEEKG 415

Query: 434 LRQVTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSIVQKML 492
           L Q+ D   IE++V + +  NP  V    + K     +FVG VM+ T GKANP +  +++
Sbjct: 416 LTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANPELTNRII 475

Query: 493 KEKL 496
           ++ L
Sbjct: 476 QKLL 479