RPSBLAST alignment of GI: 254780979 and protein with PDBid: 3al0
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 482
Score = 561 bits (1448), Expect = e-160
Identities = 204/484 (42%), Positives = 296/484 (61%), Gaps = 14/484 (2%)
Query: 21 DWEVVIGIEVHAQLSVVSKLFSGASVN-FGAEPNTQVSFFDAAMPGMLPILNGRCVQQAV 79
+ VIG+E+H QLS +K F + F PNT + PG LP+ N ++ AV
Sbjct: 2 RYRPVIGLEIHVQLSTKTKAFCSCPADVFELPPNTAICPVCTGQPGALPVPNEEMIRFAV 61
Query: 80 MTGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTI 139
T L LN I+KYS F RKNYFYPDLP+GYQISQ+ PI EG + + +
Sbjct: 62 KTALALNCKIHKYSRFDRKNYFYPDLPKGYQISQYFYPIATEGFLEIDGDEGRK------ 115
Query: 140 EVGIERIHLEQDAGKSIHDQYSAV----SCIDLNRSGVALMEIVTKPDMRSSLEAKAFLT 195
+V I R+HLE+DAGK +H+ S S +D+NR GV L+EIVT+PD+ S EA+ F+
Sbjct: 116 KVRIRRLHLEEDAGKLVHEGDSITRASYSLVDMNRCGVPLIEIVTEPDISSPREARVFME 175
Query: 196 KLRSILRYLGTCDGNMEEGSMRADVNVSV-CRPGEAWGTRCEVKNVNSIRFLGLAIEYEA 254
KLRSI+RYLG G+ME+G++R D N+SV R EVKN+NS RF+ A+EYE
Sbjct: 176 KLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERALEYEF 235
Query: 255 RRQIAILEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAI 314
R + +E G + +ETR +D + T S+R KE+ DYRYF EPD+ P+ + ++++ +
Sbjct: 236 ERIVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSDEYLEEV 295
Query: 315 KKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYFE-KLAVNRDKKIVANWVINDL 373
KK++PELPD K ERF+ E+G+ YDA VL S K +A++FE + V K ++NW++ ++
Sbjct: 296 KKELPELPDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSNWIMTEV 355
Query: 374 LGVLNRSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTPKEIVEELG 433
L LN I ++ ++P +L L+ +G IS KIAK+IF ++E G P +IVEE G
Sbjct: 356 LRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPSQIVEEKG 415
Query: 434 LRQVTDLSAIEKVVDEVINSNPNNVARI-ATKPNLVSWFVGQVMKNTGGKANPSIVQKML 492
L Q+ D IE++V + + NP V + K +FVG VM+ T GKANP + +++
Sbjct: 416 LTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANPELTNRII 475
Query: 493 KEKL 496
++ L
Sbjct: 476 QKLL 479