RPSBLAST alignment of GI: 254780979 and protein with PDBid: 3kfu

>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 466
 Score =  544 bits (1403), Expect = e-155
 Identities = 162/407 (39%), Positives = 242/407 (59%), Gaps = 17/407 (4%)

Query: 22  WEVVIGIEVHAQLSVVSKLFSGASVN-FGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVM 80
           +E VIG+EVH  L   +K+F G   + FGAEPNT        +PG LP+ N   V+  + 
Sbjct: 2   YEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLR 61

Query: 81  TGLGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIE 140
             L L A + +  VF RKNYFYPDLP+ YQISQ+D P+   G + +              
Sbjct: 62  LALALGAEVPERLVFHRKNYFYPDLPKNYQISQYDLPLGRGGSLPLGER----------R 111

Query: 141 VGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSI 200
           V I+R+HLE+DAGKS+H      + +DLNR+G  L+E+VT+PD+++  EA+ FL +++++
Sbjct: 112 VRIKRLHLEEDAGKSLH--LEGRTLLDLNRAGSPLIELVTEPDLKTPEEARLFLQRIQAL 169

Query: 201 LRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAI 260
           ++ LG  D + EEG +RADVNVSV R GE  GT+ E+KN+NS + +  A+EYE RRQ  I
Sbjct: 170 VQTLGISDASPEEGKLRADVNVSVRRVGEPLGTKVEIKNLNSFKSVQRALEYEIRRQTEI 229

Query: 261 LEDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPE 320
           L  G  ++Q T  F+    +T  +RTKE+  DYRYF EPDL P+ I  D++  +++ +PE
Sbjct: 230 LRRGEKVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPRDWLEEVRRSLPE 289

Query: 321 LPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAV--NRDKKIVANWVINDLLGVLN 378
           LP  K  R+    GI   DA VL    S+A + ++         + +ANW++ D+ G+L+
Sbjct: 290 LPWEKEARYR-ALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALANWLLADVAGLLH 348

Query: 379 RSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGTP 425
             G  +E+T +SP  L  L+ L   G ++ ++AK +   + E G  P
Sbjct: 349 ERGLRLEETRLSPEGLARLVGLFERGEVTSRVAKSLLPEVLE-GQDP 394