RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA
amidotransferase subunit B [Candidatus Liberibacter asiaticus str.
psy62]
(500 letters)
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, N-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 290
Score = 364 bits (936), Expect = e-102
Identities = 140/298 (46%), Positives = 192/298 (64%), Gaps = 9/298 (3%)
Query: 23 EVVIGIEVHAQLSVVSKLFSGASVNFGAEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTG 82
E VIG+EVH +L SK+FS + +FGAEPN+ + D A PG+LP++N R V A+
Sbjct: 1 ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAA 60
Query: 83 LGLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVG 142
+ LN I S F RKNYFYPD P+ YQISQ D+PI G + + + + +G
Sbjct: 61 MALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETK------RIG 114
Query: 143 IERIHLEQDAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILR 202
I R+H+E+DAGKS H S +DLNR G L+EIV++PD+RS EA A+L KLRSI++
Sbjct: 115 ITRLHMEEDAGKSTH--KGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQ 172
Query: 203 YLGTCDGNMEEGSMRADVNVSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIAIL 261
Y G D MEEGS+R D N+S+ G E +GT+ E+KN+NS ++ +EYE +RQ L
Sbjct: 173 YTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEEL 232
Query: 262 EDGGHIRQETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319
+GG I QETR FD S +T +R KE + DYRYF EPD++PL ID+ + +++ IP
Sbjct: 233 LNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIP 290
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln)
amidotransferase subunit E, GatE {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 319
Score = 258 bits (661), Expect = 6e-70
Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 43/330 (13%)
Query: 21 DWEVV---IGIEVHAQLSVVSKLFSGASVNFG-AEPNTQVSFFDAAMPGMLPILNGRCVQ 76
DWE V +G+E+H QL SKLF +EP+ + L + +
Sbjct: 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFE 61
Query: 77 QAVMTGL--GLNAHINKYSVFARKNYFYPDLPQGYQISQHDKPIVGEGKVSVS------- 127
+A+ N H V A + +P P+ +I+ ++ V
Sbjct: 62 EAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQV 121
Query: 128 IGPDKSGQFRTI--------------EVGIERIHLEQDAGKSIHDQYSAVSCIDLNRSGV 173
I +G F+ V IE + LE+DA + I + L+R G+
Sbjct: 122 IDGSNTGGFQRTGLVATDGHLETPQGTVKIENLCLEEDAARRIRETGD-GVVFRLDRLGI 180
Query: 174 ALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSVCRPGEAWGT 233
L+EI T P M + + ++ ILR G ++R D+N+S+ G
Sbjct: 181 PLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRGLG---TIRQDLNISIR-----DGA 232
Query: 234 RCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNETRSLRTKED 289
R EVK V + + +E E +RQ++++E ++ +ETR P T+ LR
Sbjct: 233 RVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGPEETRKALPDG-NTQYLRPLPT 291
Query: 290 ALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319
R + E D+ I++D + I++ +P
Sbjct: 292 --SSRMYLETDIPLFRIEDDLLEGIRRNLP 319
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln)
amidotransferase subunit E, GatE {Pyrococcus abyssi
[TaxId: 29292]}
Length = 321
Score = 249 bits (637), Expect = 3e-67
Identities = 76/339 (22%), Positives = 120/339 (35%), Gaps = 65/339 (19%)
Query: 21 DWEVVIGIEVHAQLSVVSKLFSGASVNFGAEPN--------------------------- 53
+ + +G+E+H QL KLFS +
Sbjct: 8 ELGLKVGLEIHRQLDT-KKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKK 66
Query: 54 -------TQVSFFDAAMPGMLPIL--NGRCVQQAVMTGLGLNAHINKYSVFARKNYFYPD 104
D P + ++ A+ LNA + RK
Sbjct: 67 GRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGS 126
Query: 105 LPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAGKSIHDQYSAVS 164
G+Q + + VGI I LE+DA + I +
Sbjct: 127 NVSGFQRTAIIATDG-------------KVETPWGAVGIPTICLEEDAARIIE-RKDKEV 172
Query: 165 CIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGNMEEGSMRADVNVSV 224
L+R G+ L+EI T PD+ +AK + LR + G++R D+NVS+
Sbjct: 173 IYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGL--GTIRQDLNVSI 230
Query: 225 CRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIR----QETRLFDPSKNE 280
G R E+K V + + + IE E RQ+ +L+ +R +ETR P N
Sbjct: 231 K-----GGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGPEETRRALPDGN- 284
Query: 281 TRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIP 319
T +R R + E D+ PL I +D + IK+ +P
Sbjct: 285 TEYMRPLPG--KARMYPETDIPPLRIPDDLKKKIKENLP 321
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, C-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 107
Score = 125 bits (314), Expect = 1e-29
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYF-EKLAVNRDKKIVANWVINDLLGVLN 378
ELPD ++ +++ E G+ YDA VL K ++D+F + D K+ +NW++ + LN
Sbjct: 1 ELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLN 60
Query: 379 RSGKSIEDTPISPNQLGELIDLIIDGTISGKIAKDIFNILWEKGGT 424
++ + DT ++P L +I LI DGT+S KIAK +F L KGG
Sbjct: 61 KNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGN 106
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase
subunit E, GatE, C-terminal domain {Pyrococcus abyssi
[TaxId: 29292]}
Length = 56
Score = 83.3 bits (206), Expect = 5e-17
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLG 375
ELP AK ER++ E+ + A LV D+ + E +++ + A+ ++ L G
Sbjct: 1 ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKG 56
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase
subunit E, GatE, C-terminal domain {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 59
Score = 76.7 bits (189), Expect = 4e-15
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 320 ELPDAKRERFIGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGV 376
ELP K+ER + ++G+S AS LV + ++ D ++A+ + L +
Sbjct: 1 ELPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLREL 57
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis
[TaxId: 1423]}
Length = 148
Score = 34.2 bits (78), Expect = 0.022
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 427 EIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVGQVMKNTGGKANPS 486
+I+E Q+++ + +V+E I A+ + +G +M GKA+ S
Sbjct: 85 DILEVYLPEQLSE-EELRTIVNETIAEVG------ASSKADMGKVMGAIMPKVKGKADGS 137
Query: 487 IVQKMLKEKL 496
++ K++ +L
Sbjct: 138 LINKLVSSQL 147
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia
coli [TaxId: 562]}
Length = 368
Score = 29.0 bits (64), Expect = 0.95
Identities = 32/245 (13%), Positives = 65/245 (26%), Gaps = 24/245 (9%)
Query: 40 LFSGASVNFG-AEPNTQVSFFDAAMPGMLPILNGRCVQQAVMTGLGLNAHINKYSVFARK 98
G V+ G A + + +P M G ++ ++F+
Sbjct: 129 TVFGQHVHVGCASGDDAIYLLHGLSR-FVPHFIALSAASPYMQGTDTRFASSRPNIFSAF 187
Query: 99 N--------YFYPDLPQGYQISQHDKPIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQ 150
+ ++ + I + I P S F T+EV +
Sbjct: 188 PDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRP--SPHFGTVEVRVM------ 239
Query: 151 DAGKSIHDQYSAVSCIDLNRSGVALMEIVTKPDMRSSLEAKAFLTKLRSILRYLGTCDGN 210
D ++ + I + + L R L + T
Sbjct: 240 DTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHT 299
Query: 211 MEEGSMRADVN--VSVCRPG-EAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHI 267
+ + D + P G ++ ++ GL EA+ + DGG +
Sbjct: 300 GDRRPLTEDTLRLLEKIAPSAHKIGASSAIEALHRQVVSGLN---EAQLMRDFVADGGSL 356
Query: 268 RQETR 272
+
Sbjct: 357 IGLVK 361
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 346
Score = 28.1 bits (62), Expect = 1.8
Identities = 14/105 (13%), Positives = 27/105 (25%)
Query: 347 KSIADYFEKLAVNRDKKIVANWVINDLLGVLNRSGKSIEDTPISPNQLGELIDLIIDGTI 406
+ I + + ++ + VLN L + +I+ I
Sbjct: 168 ERILSFVSASEIEDVEEFRKLLLNKRGWFVLNHGYPRAFRLRFGYFILRIKLPHLINAGI 227
Query: 407 SGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVI 451
IAK I E Q + ++ K+
Sbjct: 228 RKSIAKSILKSKEEIYEEFVRKAILAAFPQGVGIESLAKLFALST 272
>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL
{Streptomyces nogalater [TaxId: 38314]}
Length = 142
Score = 26.8 bits (58), Expect = 4.0
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 360 RDKKIVANWVINDLLGVLNRSG 381
D KI + D G L + G
Sbjct: 111 VDGKIRDHRDWPDFQGTLRQLG 132
>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 26.3 bits (58), Expect = 6.0
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 20/109 (18%)
Query: 270 ETRLFDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERF 329
+ +++ + +L K YF + D PL I E+++ P
Sbjct: 13 DGQIYSDIGSRNFTLNDKIAL----YFDDFDFTPLMIQENYLSTRPSV--LKPGQSH--- 63
Query: 330 IGEFGISLYDASVLVSDKSIADYFEKLAVNRDKKIVANWVINDLLGVLN 378
+ + S+ D EK + ++ W + L VL+
Sbjct: 64 -----LEAVAE--AANCISLGDIVEK-KIRSSEQ---LWSLLPLHAVLS 101
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal
domains {Bacillus stearothermophilus [TaxId: 1422]}
Length = 265
Score = 26.4 bits (57), Expect = 6.1
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 285 RTKEDALD-YRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERF 329
R +EDAL R L + D +AI + P L ER
Sbjct: 11 RFREDALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERM 56
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain
{Bacillus sp. [TaxId: 1409]}
Length = 357
Score = 26.0 bits (56), Expect = 6.5
Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 11/158 (6%)
Query: 219 DVNVSVCRPGEAWGTRCEVKNVNSIRFLGLAIEYEARRQIAILEDGGHIRQETRLFDPSK 278
+ + + + V + + E + ++ + ++ D
Sbjct: 151 EPSPNNNGGPGLTNDEKGWEAVKEYAEPIVEMLREKGDNMILVGNPNWSQRPDLSADNPI 210
Query: 279 NETR---SLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGI 335
+ S+ + + P+ P + + ++ + D F E+G
Sbjct: 211 DAENIMYSVHFYTGSHGASHIGYPEGTPSSERSNVMANVRYAL----DNGVAVFATEWGT 266
Query: 336 SLYDASVLVSDKSIADYFEKLAVNRDKKI-VANWVIND 372
S + + L I ANW + +
Sbjct: 267 SQANGDGGPYFDEADVWLNFL---NKHNISWANWSLTN 301
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 337
Score = 25.9 bits (56), Expect = 8.4
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 274 FDPSKNETRSLRTKEDALDYRYFSEPDLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEF 333
DP + ++ +++R+F I+ + K P P E F
Sbjct: 242 KDPKQRLGGGPSDAKEVMEHRFFL-------SINWQDVVQKKLLPPFKPQVTSEVDTRYF 294
Query: 334 GISLYDASVLVSDKSIADYFEKLAVNRDKKI--------VANW 368
S+ ++ D L +++ ++ +A+W
Sbjct: 295 DDEFTAQSITITPPDRYDSLGLLELDQREEQEMFEDFDYIADW 337
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
herpesvirus [TaxId: 37296]}
Length = 146
Score = 25.6 bits (56), Expect = 8.7
Identities = 7/58 (12%), Positives = 19/58 (32%)
Query: 406 ISGKIAKDIFNILWEKGGTPKEIVEELGLRQVTDLSAIEKVVDEVINSNPNNVARIAT 463
+ I I ++ +K + ++ + T + + + +V N R
Sbjct: 32 LLSPIKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALA 89
>d1lsha3 f.7.1.1 (A:621-1073) Lipovitellin-phosvitin complex;
beta-sheet shell regions {Lamprey (Ichthyomyzon
unicuspis) [TaxId: 30308]}
Length = 452
Score = 25.8 bits (56), Expect = 9.2
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 117 PIVGEGKVSVSIGPDKSGQFRTIEVGIERIHLEQDAG 153
I G+ V + P S + I ++ LE AG
Sbjct: 422 KITGDYVSKVYVQPTSS------KAQITKVELELQAG 452
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.387
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,872,949
Number of extensions: 91167
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 28
Length of query: 500
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,185,626
Effective search space: 487292286
Effective search space used: 487292286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)