Query gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 121 No_of_seqs 2 out of 4 Neff 1.4 Searched_HMMs 33803 Date Wed Jun 1 20:34:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780980.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3epz_A DNA (cytosine-5)-methy 61.7 5.7 0.00017 20.9 2.4 58 1-65 5-65 (103) 2 >3e7k_A TRPM7 channel; coiled- 42.0 28 0.00082 16.7 3.4 27 52-78 2-28 (56) 3 >1gwe_A Catalase; oxidoreducta 31.7 23 0.00068 17.2 1.5 29 86-114 91-121 (165) 4 >1fhf_A SEED coat peroxidase; 30.5 43 0.0013 15.5 3.2 44 73-120 8-51 (65) 5 >2w9y_A CE-FAR-7, fatty acid/r 28.6 29 0.00087 16.5 1.7 20 85-104 38-57 (63) 6 >3ej9_A Alpha-subunit of trans 26.5 35 0.001 16.0 1.8 32 18-49 3-34 (48) 7 >3lto_A Mevalonate diphosphate 24.8 24 0.00071 17.0 0.7 33 46-78 22-54 (151) 8 >1dgf_A Catalase; heme, NADPH, 23.8 39 0.0012 15.8 1.6 29 86-114 90-120 (149) 9 >2ogf_A Hypothetical protein M 20.5 37 0.0011 15.9 0.9 30 79-108 2-32 (122) 10 >2qeu_A Putative carboxymucono 18.2 74 0.0022 14.1 2.2 15 77-91 34-48 (82) No 1 >>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal binding, DNA binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens} (A:166-268) Probab=61.72 E-value=5.7 Score=20.86 Aligned_cols=58 Identities=28% Similarity=0.249 Sum_probs=36.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH Q ss_conf 91467778889999999741011120304678765456789999---864778998888999999999 Q gi|254780980|r 1 MKAKILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIK---EANFKISETHRLAQERVEAAE 65 (121) Q Consensus 1 MkAK~Lm~S~~~TT~lTI~GC~iVigrtEDllNklqknS~~MiK---EA~~~i~E~HrLAqE~VE~A~ 65 (121) |+-||+|.-...-.++--.. ..-|||||++|- +-+-+ -++|-----+|-||=-++|-+ T Consensus 5 ~~EKi~lSKiVIEfL~~~~~-----~tYEDLLNkiet--~vpP~~l~~~~fTEd~LlrhAQFv~dQV~ 65 (103) T 3epz_A 5 XQEKIYISKIVVEFLQSNSD-----STYEDLINKIET--TVPPSGLNLNRFTEDSLLRHAQFVVEQVE 65 (103) T ss_dssp CCHHHHHHHHHHHHHHHCTT-----CCHHHHHHHHHH--CBCCGGGCCCCCCHHHHHTTHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999999712999-----989999999985--42864456765559999974269999999 No 2 >>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, membrane protein; 2.01A {Rattus norvegicus} (A:) Probab=42.01 E-value=28 Score=16.67 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 988889999999999999999865443 Q gi|254780980|r 52 ETHRLAQERVEAAEKRVKEVEERATAS 78 (121) Q Consensus 52 E~HrLAqE~VE~A~kRVKE~EE~a~A~ 78 (121) |--|...||||.--++++|+.|+-|.- T Consensus 2 ERIrvT~ERVE~M~~~leeVneken~~ 28 (56) T 3e7k_A 2 AGSRVTFERVEQMSIQIKEVGDRVNYI 28 (56) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 985007999999999999997899999 No 3 >>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} (A:141-191,A:390-503) Probab=31.68 E-value=23 Score=17.19 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=23.5 Q ss_pred HHHHHHC--CCCCHHHHHHHHHHHHHHHHEE Q ss_conf 9999836--6801034544347875432102 Q gi|254780980|r 86 LANAFWD--LSDEDKNAFTGNVKQEVCKVKK 114 (121) Q Consensus 86 L~~~F~~--L~~e~k~~F~~~vk~~vckvkk 114 (121) -++.||. ++++.|..+++||-.++.+|.. T Consensus 91 Qar~lyr~l~s~~ek~~Li~Nia~~L~~v~~ 121 (165) T 1gwe_A 91 QAGTLVREVFSDQERDDFVETVAGALKGVRQ 121 (165) T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHTTCCH T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCH T ss_conf 2489987619999999999999999877999 No 4 >>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} (A:142-169,A:268-304) Probab=30.50 E-value=43 Score=15.54 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=33.1 Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCC Q ss_conf 865443067899999998366801034544347875432102211799 Q gi|254780980|r 73 ERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCKVKKITVPPS 120 (121) Q Consensus 73 E~a~A~r~L~~DeL~~~F~~L~~e~k~~F~~~vk~~vckvkkitvpps 120 (121) .+|-|-+||.+|||+. ||.-.+..|-..-..-.-|.-.|.|++. T Consensus 8 ~~~~~~~~~~~~~~~~----~~~~~~~~Ff~~FA~AMVKMG~I~VlTG 51 (65) T 1fhf_A 8 KASFAVQGLNTLDLVT----LSGGHQNTFFSNFRVSMIKMGNIGVLTG 51 (65) T ss_dssp HHHHHHTTCCHHHHHH----HGGGGHHHHHHHHHHHHHHHTTTTCCCT T ss_pred HHHHHHCCCCHHHHHH----HHCCEHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 9999871588799999----8546599999999999999976999839 No 5 >>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans} (A:78-140) Probab=28.58 E-value=29 Score=16.54 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=15.8 Q ss_pred HHHHHHHCCCCCHHHHHHHH Q ss_conf 99999836680103454434 Q gi|254780980|r 85 ELANAFWDLSDEDKNAFTGN 104 (121) Q Consensus 85 eL~~~F~~L~~e~k~~F~~~ 104 (121) .|-+.|-.||+|||++.-.| T Consensus 38 rLH~~Fq~ls~edqaal~kn 57 (63) T 2w9y_A 38 RLHQEFQSLSSEDQAALRKN 57 (63) T ss_dssp HHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHH T ss_conf 99999872799999999987 No 6 >>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehalogenase; CAAD, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A (A:1-48) Probab=26.48 E-value=35 Score=16.05 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=26.0 Q ss_pred HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 74101112030467876545678999986477 Q gi|254780980|r 18 IGGCDIVIGRTEDLLNKLQKNSTQMIKEANFK 49 (121) Q Consensus 18 I~GC~iVigrtEDllNklqknS~~MiKEA~~~ 49 (121) .+.||.-.|||..--.++...-+|.|-||.-+ T Consensus 3 ~iscdmr~grtdeqkr~l~agllrii~eatge 34 (48) T 3ej9_A 3 MISCDMRYGRTDEQKRALSAGLLRVISEATGE 34 (48) T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHCC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 89999748999999999999999999998393 No 7 >>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} (A:173-323) Probab=24.84 E-value=24 Score=17.05 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 647789988889999999999999999865443 Q gi|254780980|r 46 ANFKISETHRLAQERVEAAEKRVKEVEERATAS 78 (121) Q Consensus 46 A~~~i~E~HrLAqE~VE~A~kRVKE~EE~a~A~ 78 (121) .-|+..+|+.+.+.|++++++|.+++++--..+ T Consensus 22 ~gM~tv~tSp~y~~w~~~~~~~l~~~~~Ai~~~ 54 (151) T 3lto_A 22 VAHKLVKTSPFYETRSERAEANLKLLLNAFENK 54 (151) T ss_dssp HHHHHGGGSTTTTTHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 888522468453999999788699999999809 No 8 >>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} (A:152-202,A:400-497) Probab=23.83 E-value=39 Score=15.78 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=23.3 Q ss_pred HHHHHHC--CCCCHHHHHHHHHHHHHHHHEE Q ss_conf 9999836--6801034544347875432102 Q gi|254780980|r 86 LANAFWD--LSDEDKNAFTGNVKQEVCKVKK 114 (121) Q Consensus 86 L~~~F~~--L~~e~k~~F~~~vk~~vckvkk 114 (121) -++.||. |+.+.|..+++||-.++++|.. T Consensus 90 Qp~~lyr~~ls~~eq~~lv~Nia~~L~~v~~ 120 (149) T 1dgf_A 90 QVRAFYVNVLNEEQRKRLCENIAGHLKDAQI 120 (149) T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHTTSCH T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH T ss_conf 1248888749999999999999998608999 No 9 >>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii} (A:) Probab=20.48 E-value=37 Score=15.91 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=21.2 Q ss_pred HCCCHHHHH-HHHHCCCCCHHHHHHHHHHHH Q ss_conf 067899999-998366801034544347875 Q gi|254780980|r 79 RKLSVDELA-NAFWDLSDEDKNAFTGNVKQE 108 (121) Q Consensus 79 r~L~~DeL~-~~F~~L~~e~k~~F~~~vk~~ 108 (121) ++|-..|.+ .||-|++|.+.+.|-+.|+-- T Consensus 2 ~~~~~~~~~~kYF~n~TdrerA~FEaGIklG 32 (122) T 2ogf_A 2 LRVEETEVFKKYFKNLTDRERAVFEGGITLG 32 (122) T ss_dssp CCGGGSHHHHHTTTTSCHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHCHHHC T ss_conf 5410216789875138868888875111120 No 10 >>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family, structural genomics; HET: CIT GOL; 1.65A {Burkholderia xenovorans LB400} (A:60-141) Probab=18.17 E-value=74 Score=14.08 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=11.8 Q ss_pred HHHCCCHHHHHHHHH Q ss_conf 430678999999983 Q gi|254780980|r 77 ASRKLSVDELANAFW 91 (121) Q Consensus 77 A~r~L~~DeL~~~F~ 91 (121) -.-||+||||+..|. T Consensus 34 ~~AGLtmeELvE~~v 48 (82) T 2qeu_A 34 XNAGLSVDELIEGIL 48 (82) T ss_dssp HHTTCCHHHHHHHHH T ss_pred HHCCCCHHHHHHHHH T ss_conf 983798999999999 Done!