Query         gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs    2 out of 4
Neff          1.4 
Searched_HMMs 33803
Date          Wed Jun  1 20:34:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780980.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3epz_A DNA (cytosine-5)-methy  61.7     5.7 0.00017   20.9   2.4   58    1-65      5-65  (103)
  2 >3e7k_A TRPM7 channel; coiled-  42.0      28 0.00082   16.7   3.4   27   52-78      2-28  (56)
  3 >1gwe_A Catalase; oxidoreducta  31.7      23 0.00068   17.2   1.5   29   86-114    91-121 (165)
  4 >1fhf_A SEED coat peroxidase;   30.5      43  0.0013   15.5   3.2   44   73-120     8-51  (65)
  5 >2w9y_A CE-FAR-7, fatty acid/r  28.6      29 0.00087   16.5   1.7   20   85-104    38-57  (63)
  6 >3ej9_A Alpha-subunit of trans  26.5      35   0.001   16.0   1.8   32   18-49      3-34  (48)
  7 >3lto_A Mevalonate diphosphate  24.8      24 0.00071   17.0   0.7   33   46-78     22-54  (151)
  8 >1dgf_A Catalase; heme, NADPH,  23.8      39  0.0012   15.8   1.6   29   86-114    90-120 (149)
  9 >2ogf_A Hypothetical protein M  20.5      37  0.0011   15.9   0.9   30   79-108     2-32  (122)
 10 >2qeu_A Putative carboxymucono  18.2      74  0.0022   14.1   2.2   15   77-91     34-48  (82)

No 1  
>>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal binding, DNA binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens} (A:166-268)
Probab=61.72  E-value=5.7  Score=20.86  Aligned_cols=58  Identities=28%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             91467778889999999741011120304678765456789999---864778998888999999999
Q gi|254780980|r    1 MKAKILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIK---EANFKISETHRLAQERVEAAE   65 (121)
Q Consensus         1 MkAK~Lm~S~~~TT~lTI~GC~iVigrtEDllNklqknS~~MiK---EA~~~i~E~HrLAqE~VE~A~   65 (121)
                      |+-||+|.-...-.++--..     ..-|||||++|-  +-+-+   -++|-----+|-||=-++|-+
T Consensus         5 ~~EKi~lSKiVIEfL~~~~~-----~tYEDLLNkiet--~vpP~~l~~~~fTEd~LlrhAQFv~dQV~   65 (103)
T 3epz_A            5 XQEKIYISKIVVEFLQSNSD-----STYEDLINKIET--TVPPSGLNLNRFTEDSLLRHAQFVVEQVE   65 (103)
T ss_dssp             CCHHHHHHHHHHHHHHHCTT-----CCHHHHHHHHHH--CBCCGGGCCCCCCHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCC-----CCHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999999712999-----989999999985--42864456765559999974269999999


No 2  
>>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, membrane protein; 2.01A {Rattus norvegicus} (A:)
Probab=42.01  E-value=28  Score=16.67  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             988889999999999999999865443
Q gi|254780980|r   52 ETHRLAQERVEAAEKRVKEVEERATAS   78 (121)
Q Consensus        52 E~HrLAqE~VE~A~kRVKE~EE~a~A~   78 (121)
                      |--|...||||.--++++|+.|+-|.-
T Consensus         2 ERIrvT~ERVE~M~~~leeVneken~~   28 (56)
T 3e7k_A            2 AGSRVTFERVEQMSIQIKEVGDRVNYI   28 (56)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             985007999999999999997899999


No 3  
>>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} (A:141-191,A:390-503)
Probab=31.68  E-value=23  Score=17.19  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=23.5

Q ss_pred             HHHHHHC--CCCCHHHHHHHHHHHHHHHHEE
Q ss_conf             9999836--6801034544347875432102
Q gi|254780980|r   86 LANAFWD--LSDEDKNAFTGNVKQEVCKVKK  114 (121)
Q Consensus        86 L~~~F~~--L~~e~k~~F~~~vk~~vckvkk  114 (121)
                      -++.||.  ++++.|..+++||-.++.+|..
T Consensus        91 Qar~lyr~l~s~~ek~~Li~Nia~~L~~v~~  121 (165)
T 1gwe_A           91 QAGTLVREVFSDQERDDFVETVAGALKGVRQ  121 (165)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHTTCCH
T ss_pred             CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf             2489987619999999999999999877999


No 4  
>>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} (A:142-169,A:268-304)
Probab=30.50  E-value=43  Score=15.54  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCC
Q ss_conf             865443067899999998366801034544347875432102211799
Q gi|254780980|r   73 ERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCKVKKITVPPS  120 (121)
Q Consensus        73 E~a~A~r~L~~DeL~~~F~~L~~e~k~~F~~~vk~~vckvkkitvpps  120 (121)
                      .+|-|-+||.+|||+.    ||.-.+..|-..-..-.-|.-.|.|++.
T Consensus         8 ~~~~~~~~~~~~~~~~----~~~~~~~~Ff~~FA~AMVKMG~I~VlTG   51 (65)
T 1fhf_A            8 KASFAVQGLNTLDLVT----LSGGHQNTFFSNFRVSMIKMGNIGVLTG   51 (65)
T ss_dssp             HHHHHHTTCCHHHHHH----HGGGGHHHHHHHHHHHHHHHTTTTCCCT
T ss_pred             HHHHHHCCCCHHHHHH----HHCCEHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999871588799999----8546599999999999999976999839


No 5  
>>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans} (A:78-140)
Probab=28.58  E-value=29  Score=16.54  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=15.8

Q ss_pred             HHHHHHHCCCCCHHHHHHHH
Q ss_conf             99999836680103454434
Q gi|254780980|r   85 ELANAFWDLSDEDKNAFTGN  104 (121)
Q Consensus        85 eL~~~F~~L~~e~k~~F~~~  104 (121)
                      .|-+.|-.||+|||++.-.|
T Consensus        38 rLH~~Fq~ls~edqaal~kn   57 (63)
T 2w9y_A           38 RLHQEFQSLSSEDQAALRKN   57 (63)
T ss_dssp             HHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHH
T ss_conf             99999872799999999987


No 6  
>>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehalogenase; CAAD, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A (A:1-48)
Probab=26.48  E-value=35  Score=16.05  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=26.0

Q ss_pred             HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74101112030467876545678999986477
Q gi|254780980|r   18 IGGCDIVIGRTEDLLNKLQKNSTQMIKEANFK   49 (121)
Q Consensus        18 I~GC~iVigrtEDllNklqknS~~MiKEA~~~   49 (121)
                      .+.||.-.|||..--.++...-+|.|-||.-+
T Consensus         3 ~iscdmr~grtdeqkr~l~agllrii~eatge   34 (48)
T 3ej9_A            3 MISCDMRYGRTDEQKRALSAGLLRVISEATGE   34 (48)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89999748999999999999999999998393


No 7  
>>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} (A:173-323)
Probab=24.84  E-value=24  Score=17.05  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             647789988889999999999999999865443
Q gi|254780980|r   46 ANFKISETHRLAQERVEAAEKRVKEVEERATAS   78 (121)
Q Consensus        46 A~~~i~E~HrLAqE~VE~A~kRVKE~EE~a~A~   78 (121)
                      .-|+..+|+.+.+.|++++++|.+++++--..+
T Consensus        22 ~gM~tv~tSp~y~~w~~~~~~~l~~~~~Ai~~~   54 (151)
T 3lto_A           22 VAHKLVKTSPFYETRSERAEANLKLLLNAFENK   54 (151)
T ss_dssp             HHHHHGGGSTTTTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             888522468453999999788699999999809


No 8  
>>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} (A:152-202,A:400-497)
Probab=23.83  E-value=39  Score=15.78  Aligned_cols=29  Identities=17%  Similarity=0.346  Sum_probs=23.3

Q ss_pred             HHHHHHC--CCCCHHHHHHHHHHHHHHHHEE
Q ss_conf             9999836--6801034544347875432102
Q gi|254780980|r   86 LANAFWD--LSDEDKNAFTGNVKQEVCKVKK  114 (121)
Q Consensus        86 L~~~F~~--L~~e~k~~F~~~vk~~vckvkk  114 (121)
                      -++.||.  |+.+.|..+++||-.++++|..
T Consensus        90 Qp~~lyr~~ls~~eq~~lv~Nia~~L~~v~~  120 (149)
T 1dgf_A           90 QVRAFYVNVLNEEQRKRLCENIAGHLKDAQI  120 (149)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHTTSCH
T ss_pred             CHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH
T ss_conf             1248888749999999999999998608999


No 9  
>>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii} (A:)
Probab=20.48  E-value=37  Score=15.91  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             HCCCHHHHH-HHHHCCCCCHHHHHHHHHHHH
Q ss_conf             067899999-998366801034544347875
Q gi|254780980|r   79 RKLSVDELA-NAFWDLSDEDKNAFTGNVKQE  108 (121)
Q Consensus        79 r~L~~DeL~-~~F~~L~~e~k~~F~~~vk~~  108 (121)
                      ++|-..|.+ .||-|++|.+.+.|-+.|+--
T Consensus         2 ~~~~~~~~~~kYF~n~TdrerA~FEaGIklG   32 (122)
T 2ogf_A            2 LRVEETEVFKKYFKNLTDRERAVFEGGITLG   32 (122)
T ss_dssp             CCGGGSHHHHHTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCHHHHHHHHHCHHHC
T ss_conf             5410216789875138868888875111120


No 10 
>>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family, structural genomics; HET: CIT GOL; 1.65A {Burkholderia xenovorans LB400} (A:60-141)
Probab=18.17  E-value=74  Score=14.08  Aligned_cols=15  Identities=40%  Similarity=0.490  Sum_probs=11.8

Q ss_pred             HHHCCCHHHHHHHHH
Q ss_conf             430678999999983
Q gi|254780980|r   77 ASRKLSVDELANAFW   91 (121)
Q Consensus        77 A~r~L~~DeL~~~F~   91 (121)
                      -.-||+||||+..|.
T Consensus        34 ~~AGLtmeELvE~~v   48 (82)
T 2qeu_A           34 XNAGLSVDELIEGIL   48 (82)
T ss_dssp             HHTTCCHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHH
T ss_conf             983798999999999


Done!