RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780980|ref|YP_003065393.1| hypothetical protein
CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)



>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein
           desaturase {Castor bean (Ricinus communis) [TaxId:
           3988]}
          Length = 345

 Score = 26.4 bits (58), Expect = 0.84
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 50  ISETHRLAQERVEAAEKRVKEVEERATASRK 80
           +S   + AQ+ V     R++ +EERA    K
Sbjct: 298 LSAEGQKAQDYVCRLPPRIRRLEERAQGRAK 328


>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica
           napus) [TaxId: 3708]}
          Length = 297

 Score = 25.9 bits (55), Expect = 1.1
 Identities = 13/65 (20%), Positives = 23/65 (35%)

Query: 41  QMIKEANFKISETHRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNA 100
           Q I+            A + +   +  ++     A   + L+ DE+ NA   L     +A
Sbjct: 214 QNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASA 273

Query: 101 FTGNV 105
            TG  
Sbjct: 274 ITGAT 278


>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
          domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 346

 Score = 25.8 bits (57), Expect = 1.2
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 41 QMIKEANFKISETHRLAQERVEAAEKRVKEVEE--RATASRKLSVDELA 87
           + KEA   I   ++      +   KR+ ++E   + T +   + +EL 
Sbjct: 1  HLFKEAQAFIENMYKECHYETQIINKRLHDIELEIKETGTYTHTEEELI 49


>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite
           (Plasmodium falciparum) [TaxId: 5833]}
          Length = 329

 Score = 24.1 bits (50), Expect = 3.5
 Identities = 12/88 (13%), Positives = 28/88 (31%)

Query: 18  IGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQERVEAAEKRVKEVEERATA 77
           I   +       +      ++    I   + +  E    A +     +  ++  E+ A  
Sbjct: 228 INKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPL 287

Query: 78  SRKLSVDELANAFWDLSDEDKNAFTGNV 105
            +KL   ++ +    L   +  A TG  
Sbjct: 288 RQKLLSTDIGSVASFLLSRESRAITGQT 315


>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 497

 Score = 23.8 bits (51), Expect = 4.9
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 73  ERATASRKLSVDELANAFWDLSDED 97
           ER   S ++   +L   + D  +  
Sbjct: 368 ERLMVSEEIKAKDLPEMWNDEMERL 392


>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 242

 Score = 23.0 bits (49), Expect = 6.6
 Identities = 8/48 (16%), Positives = 23/48 (47%)

Query: 58  QERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNV 105
            ++V A  +  ++++ER    +   V+++ N+   L  +   + +G  
Sbjct: 185 GKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGG 232


>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 297

 Score = 22.7 bits (48), Expect = 8.2
 Identities = 6/54 (11%), Positives = 17/54 (31%)

Query: 52  ETHRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNV 105
            +    +      +   +   ++  A R    +E+++    L     +  TG  
Sbjct: 199 YSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQS 252


>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
          {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 22.6 bits (48), Expect = 8.7
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 54 HRLAQERVEAAEKRVKEVEERATASRKLSVDELA 87
          H + + R+E A  + +E  E         ++++ 
Sbjct: 3  HHMIEYRIEEAVAKYREFYEFKPVRESAGIEDVK 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.337 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 406,652
Number of extensions: 15967
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 21
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)