BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780980|ref|YP_003065393.1| hypothetical protein
CLIBASIA_04405 [Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780980|ref|YP_003065393.1| hypothetical protein CLIBASIA_04405 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 121

 Score =  247 bits (630), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MKAKILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQER 60
           MKAKILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQER
Sbjct: 1   MKAKILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQER 60

Query: 61  VEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCKVKKITVPPS 120
           VEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCKVKKITVPPS
Sbjct: 61  VEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCKVKKITVPPS 120

Query: 121 N 121
           N
Sbjct: 121 N 121


>gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 120

 Score = 67.4 bits (163), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 10/108 (9%)

Query: 1   MKAKILMTSAFSTTLLTIGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISETHRLAQER 60
           M+AK L+ S   TT +TI GC +V    ED  N+++  S +M+KEA  ++ E H+LA+E 
Sbjct: 1   MRAKTLLASTLVTTAITIIGCSLV----ED--NRIE--SLRMVKEAKMEVLEAHKLAKEY 52

Query: 61  VEAAEKRVKEVEERATAS--RKLSVDELANAFWDLSDEDKNAFTGNVK 106
           VE A +RVKE EE++ A   + L +D+L   F +L  +++  F   ++
Sbjct: 53  VEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQ 100


>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 199

 Score = 22.7 bits (47), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 88  NAFWDLSDEDKNAFTGNVKQEVCKVKKITVPP 119
           N F + + E K     N+K  VC  +K  +PP
Sbjct: 131 NTFDNTNLETKIPLPNNLKPNVCVKEKKLIPP 162


>gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 22.7 bits (47), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 18  IGGCDIVIGRTEDLLNKLQKNSTQMIKEANFKISET 53
           +  CD +I  T   LNK +  + ++ K+   +I+ +
Sbjct: 90  LSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPS 125


>gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 478

 Score = 21.9 bits (45), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 51  SETHRLAQERVEAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEV 109
           S+  + ++   E    + KEVE   +       +  A  F+D    D + F G   Q++
Sbjct: 336 SDRQKPSEPLAEHPHPKRKEVERELSEIEGAKKESSARKFFDEGSPDHSPFKGERNQKL 394


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 20.8 bits (42), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 62  EAAEKRVKEVEERATASRKLSVDELANAFWDLSDEDKNAFTGNVKQEVCKV 112
           E  E   + V ER  +  +     +A     +SD DK +   + K   CK+
Sbjct: 494 EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.126    0.337 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,560
Number of Sequences: 1233
Number of extensions: 2160
Number of successful extensions: 12
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 121
length of database: 328,796
effective HSP length: 64
effective length of query: 57
effective length of database: 249,884
effective search space: 14243388
effective search space used: 14243388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 33 (17.3 bits)