Query gi|254780981|ref|YP_003065394.1| hypothetical protein CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 22:57:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780981.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qhs_A Lipoyltransferase; glob 24.0 20 0.00086 16.2 0.9 13 15-27 185-197 (237)
2 1w66_A Lipoyltransferase; lipo 21.1 25 0.0011 15.6 1.0 14 15-28 173-186 (232)
3 2f2f_C CDT C, cytolethal diste 16.7 24 0.001 15.8 0.0 39 1-41 1-46 (186)
4 2djf_C Cathepsin C, dipeptidyl 15.3 33 0.0014 15.0 0.4 21 14-34 48-68 (69)
5 3hkw_A NS5B RNA-dependent RNA 5.8 1.2E+02 0.0051 12.0 0.4 20 15-34 12-31 (581)
6 1rp3_B Anti sigma factor FLGM; 5.7 82 0.0035 12.9 -0.5 25 32-56 39-63 (88)
7 1xg0_C B-phycoerythrin beta ch 4.9 1.2E+02 0.0052 11.9 -0.0 13 95-107 161-173 (177)
8 1f75_A Undecaprenyl pyrophosph 4.2 1.5E+02 0.0062 11.5 -0.1 11 23-33 11-21 (249)
9 3o18_A C-phycocyanin alpha sub 4.0 1.6E+02 0.0066 11.3 -0.0 13 93-105 144-156 (162)
10 2c7l_B Phycoerythrocyanin beta 3.7 1.6E+02 0.0069 11.2 -0.2 14 92-105 153-166 (172)
No 1
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=23.97 E-value=20 Score=16.16 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0568344550013
Q gi|254780981|r 15 SAINPCGIEEDNL 27 (122)
Q Consensus 15 sainpcgieednl 27 (122)
..|+|||+.....
T Consensus 185 ~~IvpCGl~~~~v 197 (237)
T 2qhs_A 185 TVIVPCGLKGKGV 197 (237)
T ss_dssp GGBCCCSSCCSEE
T ss_pred CCEEECCCCCCCE
T ss_conf 7378368899837
No 2
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=21.13 E-value=25 Score=15.63 Aligned_cols=14 Identities=43% Similarity=0.942 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 05683445500133
Q gi|254780981|r 15 SAINPCGIEEDNLK 28 (122)
Q Consensus 15 sainpcgieednlk 28 (122)
+.|+||||......
T Consensus 173 ~~IvpCGl~~~~vT 186 (232)
T 1w66_A 173 TAIVPCGISDAAVT 186 (232)
T ss_dssp GGSCGGGCSSSEEC
T ss_pred CEEECCCCCCCCEE
T ss_conf 92784799799674
No 3
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1
Probab=16.74 E-value=24 Score=15.77 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 90689999999974-------056834455001333777113454310
Q gi|254780981|r 1 MKKYFTILTMLFVS-------SAINPCGIEEDNLKSSPLPHIALESLS 41 (122)
Q Consensus 1 mkkyftiltmlfvs-------sainpcgieednlkssplphialesls 41 (122)
|||++-...++++. ++-+| ....+...++-|-+++.||-
T Consensus 1 mkK~~i~f~~~l~~~~~s~~~~~~~P--~~~~d~~~~~~P~~siRSl~ 46 (186)
T 2f2f_C 1 MKKYLLSFLLSMILTLTSHAESNPDP--TTYPDVELSPPPRISLRSLL 46 (186)
T ss_dssp ------------------------CC--CSCTTSCCCCCCEEEEEETT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCEEEEEECC
T ss_conf 93248999999997511455468897--77787655788558875213
No 4
>2djf_C Cathepsin C, dipeptidyl-peptidase 1; protein-inhibitor complex, covalently bound inhibitor, DPPI- inhibitor complex, cathepsin C inhibitor complex; HET: NAG PHE; 2.00A {Homo sapiens} PDB: 1k3b_C* 2djg_C*
Probab=15.32 E-value=33 Score=15.05 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=15.7
Q ss_pred HCCCCCCCCCCCCCCCCCCCH
Q ss_conf 405683445500133377711
Q gi|254780981|r 14 SSAINPCGIEEDNLKSSPLPH 34 (122)
Q Consensus 14 ssainpcgieednlkssplph 34 (122)
....|.||||.+-.-..|+|.
T Consensus 48 ~~g~n~cgIe~~~~~~~Pipk 68 (69)
T 2djf_C 48 RRGTDECAIESIAVAATPIPK 68 (69)
T ss_dssp ECSSCGGGTTSCCEEEEECCC
T ss_pred ECCCCCCCCCCEEEEEEECCC
T ss_conf 748985365880686021578
No 5
>3hkw_A NS5B RNA-dependent RNA polymerase; HCV polymerase, 1,5-benzodiazepine, transferase; HET: IX6; 1.55A {Hepatitis c virus subtype 1A} PDB: 2xi3_A* 2xi2_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A* 3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 3gyn_A* 3h2l_A* 3igv_A* 2ax0_A* 2awz_A* 2ax1_A* 1os5_A* 2jc1_A* ...
Probab=5.77 E-value=1.2e+02 Score=11.96 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCCCCCCH
Q ss_conf 05683445500133377711
Q gi|254780981|r 15 SAINPCGIEEDNLKSSPLPH 34 (122)
Q Consensus 15 sainpcgieednlkssplph 34 (122)
.-|.|||+|+.+|--+|+-.
T Consensus 12 a~it~c~~~~eklpi~p~~~ 31 (581)
T 3hkw_A 12 ALVTPCAAEEQKLPINALSN 31 (581)
T ss_dssp CCCCCSSCCCCBCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCC
T ss_conf 74345545557898444331
No 6
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=5.66 E-value=82 Score=12.86 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=14.5
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 7113454310102477887899988
Q gi|254780981|r 32 LPHIALESLSAENEKKELSEHEKKV 56 (122)
Q Consensus 32 lphialeslsaenekkelsehekkv 56 (122)
|..||-+++++.-|.+++|+.-++.
T Consensus 39 ls~ia~~~~~n~~Eekd~skKveei 63 (88)
T 1rp3_B 39 LSKIAQELSKNDVEEKDLEKKVKEL 63 (88)
T ss_dssp HHHHHHHHTTTCCCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999998763860367899999999
No 7
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=4.89 E-value=1.2e+02 Score=11.92 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=8.4
Q ss_pred HHCCCCHHHHHHH
Q ss_conf 2102461455442
Q gi|254780981|r 95 KSKKYTPYFDHYM 107 (122)
Q Consensus 95 kskkytpyfdhym 107 (122)
-.....|||||-.
T Consensus 161 l~~E~~~YFD~lI 173 (177)
T 1xg0_C 161 LASEVGGYFDKVT 173 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998999999
No 8
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=4.20 E-value=1.5e+02 Score=11.50 Aligned_cols=11 Identities=18% Similarity=0.730 Sum_probs=3.9
Q ss_pred CCCCCCCCCCC
Q ss_conf 50013337771
Q gi|254780981|r 23 EEDNLKSSPLP 33 (122)
Q Consensus 23 eednlkssplp 33 (122)
-+++++.+++|
T Consensus 11 ~~~~~~~~~iP 21 (249)
T 1f75_A 11 KNNNINAAQIP 21 (249)
T ss_dssp ---CCCSTTSC
T ss_pred HHCCCCCCCCC
T ss_conf 01457856799
No 9
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 1jbo_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=4.00 E-value=1.6e+02 Score=11.34 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHCCCCHHHHH
Q ss_conf 3321024614554
Q gi|254780981|r 93 SQKSKKYTPYFDH 105 (122)
Q Consensus 93 sqkskkytpyfdh 105 (122)
++-.....|||||
T Consensus 144 ~e~~~e~~~YfD~ 156 (162)
T 3o18_A 144 GQAAVEANAYIDY 156 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9899998888999
No 10
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=3.69 E-value=1.6e+02 Score=11.24 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=0.0
Q ss_pred HHHHHCCCCHHHHH
Q ss_conf 43321024614554
Q gi|254780981|r 92 FSQKSKKYTPYFDH 105 (122)
Q Consensus 92 fsqkskkytpyfdh 105 (122)
|++-.....|||||
T Consensus 153 ~~~~~~E~~~YFD~ 166 (172)
T 2c7l_B 153 CSQLMSELASYFDR 166 (172)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 48999999978999
Done!