Query gi|254780981|ref|YP_003065394.1| hypothetical protein CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:57:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780981.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w66a1 d.104.1.3 (A:1-216) Li 23.0 13 0.00093 16.0 1.0 13 15-27 171-183 (216)
2 d1d8ba_ a.60.8.1 (A:) HRDC dom 9.5 31 0.0023 13.9 0.0 26 83-109 48-73 (81)
3 d1jboa_ a.1.1.3 (A:) Phycocyan 4.7 75 0.0055 11.8 -0.0 15 94-108 145-159 (162)
4 d1xg0c_ a.1.1.3 (C:) Phycoeryt 4.5 77 0.0056 11.7 -0.0 15 93-107 157-171 (175)
5 d1ppje2 f.23.12.1 (E:1-69) Iro 4.3 1.1E+02 0.0077 11.0 1.0 29 66-94 9-37 (69)
6 d2riga_ a.26.1.3 (A:) Interfer 3.5 1.2E+02 0.0091 10.6 0.3 49 50-103 38-93 (119)
7 d1allb_ a.1.1.3 (B:) Allophyco 3.4 1.1E+02 0.008 10.9 -0.0 13 95-107 145-157 (161)
8 d3besl1 a.26.1.3 (L:0-126) Int 3.3 1.3E+02 0.0096 10.5 1.2 47 51-102 40-93 (127)
9 d1b8da_ a.1.1.3 (A:) Phycoeryt 3.0 1.3E+02 0.0094 10.5 -0.0 14 94-107 147-160 (164)
10 d1alla_ a.1.1.3 (A:) Allophyco 3.0 1.4E+02 0.01 10.3 0.4 5 101-105 150-154 (160)
No 1
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.02 E-value=13 Score=15.96 Aligned_cols=13 Identities=46% Similarity=1.012 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0568344550013
Q gi|254780981|r 15 SAINPCGIEEDNL 27 (122)
Q Consensus 15 sainpcgieednl 27 (122)
+.|+|||+..-..
T Consensus 171 ~~I~pCGl~~~~v 183 (216)
T d1w66a1 171 TAIVPCGISDAAV 183 (216)
T ss_dssp GGSCGGGCSSSEE
T ss_pred CEEECCCCCCCCE
T ss_conf 9078579999926
No 2
>d1d8ba_ a.60.8.1 (A:) HRDC domain from RecQ helicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.53 E-value=31 Score=13.86 Aligned_cols=26 Identities=8% Similarity=0.287 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 433576665433210246145544204
Q gi|254780981|r 83 KENIVMKKTFSQKSKKYTPYFDHYMTN 109 (122)
Q Consensus 83 kenivmkktfsqkskkytpyfdhymtn 109 (122)
.|-|+.-..+||.++||. ||.|-|+|
T Consensus 48 deFi~l~g~~~~~~rkyk-yfk~~i~n 73 (81)
T d1d8ba_ 48 SAFATLGTVEDKYRRRFK-YFKATIAD 73 (81)
T ss_dssp HHHGGGSCCCHHHHHHGG-GTHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHH-HHHHHHHH
T ss_conf 677421055420058888-99999999
No 3
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=4.66 E-value=75 Score=11.79 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=9.2
Q ss_pred HHHCCCCHHHHHHHC
Q ss_conf 321024614554420
Q gi|254780981|r 94 QKSKKYTPYFDHYMT 108 (122)
Q Consensus 94 qkskkytpyfdhymt 108 (122)
+-..-..|||||-..
T Consensus 145 e~~~e~~~yfD~lI~ 159 (162)
T d1jboa_ 145 QAAVEANAYIDYAIN 159 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999998889999998
No 4
>d1xg0c_ a.1.1.3 (C:) Phycoerythrin beta subunit {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
Probab=4.55 E-value=77 Score=11.71 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=9.3
Q ss_pred HHHHCCCCHHHHHHH
Q ss_conf 332102461455442
Q gi|254780981|r 93 SQKSKKYTPYFDHYM 107 (122)
Q Consensus 93 sqkskkytpyfdhym 107 (122)
++-.....|||||-.
T Consensus 157 ~~l~~E~~~YFD~lI 171 (175)
T d1xg0c_ 157 SGLASEVGGYFDKVT 171 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899999998999999
No 5
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.32 E-value=1.1e+02 Score=10.99 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 86566543001733333433576665433
Q gi|254780981|r 66 QFSEHEKKETDDPKSARKENIVMKKTFSQ 94 (122)
Q Consensus 66 qfsehekketddpksarkenivmkktfsq 94 (122)
.|++-.++++.||...-+|+---.|.|+.
T Consensus 9 DFs~YRr~~~~d~~~~~~~s~~~Rk~fsY 37 (69)
T d1ppje2 9 DFSDYRRPEVLDSTKSSKESSEARKGFSY 37 (69)
T ss_dssp CCTTTBCGGGCCTTSCSHHHHHHHHHHHH
T ss_pred CCHHHCCCCCCCCCCCCCCCCCHHCEEHH
T ss_conf 94443354334853113557410010013
No 6
>d2riga_ a.26.1.3 (A:) Interferon-gamma {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.48 E-value=1.2e+02 Score=10.59 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCH--HHHHHHHHHHHCCCHHHHH-----HHHHHHHHHHHHHHCCCCHHH
Q ss_conf 78999886510186--7786566543001733333-----433576665433210246145
Q gi|254780981|r 50 SEHEKKVIESQENP--KKQFSEHEKKETDDPKSAR-----KENIVMKKTFSQKSKKYTPYF 103 (122)
Q Consensus 50 sehekkviesqenp--kkqfsehekketddpksar-----kenivmkktfsqkskkytpyf 103 (122)
-|-|+|+|.||--. -+-| | -.+|+....+ +|.+ ..+.|+..++|..-+-
T Consensus 38 EesekkIi~SQIvs~Y~klF-e---n~k~~q~iq~si~~Ike~l-~~~f~~~~~~K~~Df~ 93 (119)
T d2riga_ 38 EESDNKIIQSQIVSFYFKLF-D---NLKDHEVIKKSMESIKEDI-FVKFFNSNLTKMDDFQ 93 (119)
T ss_pred HHCCHHHHHHHHHHHHHHHH-H---CCCCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHH
T ss_conf 72012439999999999999-7---2644489999899999999-9987078488899899
No 7
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=3.42 E-value=1.1e+02 Score=10.88 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=8.2
Q ss_pred HHCCCCHHHHHHH
Q ss_conf 2102461455442
Q gi|254780981|r 95 KSKKYTPYFDHYM 107 (122)
Q Consensus 95 kskkytpyfdhym 107 (122)
......|||||-.
T Consensus 145 ~~~e~~~YfD~li 157 (161)
T d1allb_ 145 AGKEMGIYFDYIC 157 (161)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8899886899999
No 8
>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.28 E-value=1.3e+02 Score=10.47 Aligned_cols=47 Identities=30% Similarity=0.410 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCCH--HHHHHHHHHHHCCCHH-HHH----HHHHHHHHHHHHHHCCCCHH
Q ss_conf 8999886510186--7786566543001733-333----43357666543321024614
Q gi|254780981|r 51 EHEKKVIESQENP--KKQFSEHEKKETDDPK-SAR----KENIVMKKTFSQKSKKYTPY 102 (122)
Q Consensus 51 ehekkviesqenp--kkqfsehekketddpk-sar----kenivmkktfsqkskkytpy 102 (122)
|-|+|+|.||--. -+-|. ..+|+.- ..+ +|.+ ..+.|+..++|..-+
T Consensus 40 esekkIi~SQIVs~Y~klFe----n~k~nq~iq~si~~Ike~l-~~~f~~~~~~K~~df 93 (127)
T d3besl1 40 ESDRKIMQSQIVSFYFKLFK----NFKDDQSIQKSVETIKEDM-NVKFFNSNKKKRDDF 93 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TTTTCSTTHHHHHHHHHHH-HHHTSTTCHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHH
T ss_conf 20300089999999999997----3766689999999999999-998717828889989
No 9
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]}
Probab=3.00 E-value=1.3e+02 Score=10.51 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=8.5
Q ss_pred HHHCCCCHHHHHHH
Q ss_conf 32102461455442
Q gi|254780981|r 94 QKSKKYTPYFDHYM 107 (122)
Q Consensus 94 qkskkytpyfdhym 107 (122)
+......|||||-.
T Consensus 147 e~~~e~~~yfD~lI 160 (164)
T d1b8da_ 147 QAGVEFTSALDYVI 160 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999885689999
No 10
>d1alla_ a.1.1.3 (A:) Allophycocyanin alpha subunit {Spirulina platensis [TaxId: 118562]}
Probab=2.99 E-value=1.4e+02 Score=10.29 Aligned_cols=5 Identities=60% Similarity=1.178 Sum_probs=0.0
Q ss_pred HHHHH
Q ss_conf 14554
Q gi|254780981|r 101 PYFDH 105 (122)
Q Consensus 101 pyfdh 105 (122)
|||||
T Consensus 150 ~yfD~ 154 (160)
T d1alla_ 150 SYFDY 154 (160)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 89999
Done!