RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780981|ref|YP_003065394.1| hypothetical protein
CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>gnl|CDD|34980 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 28.7 bits (64), Expect = 0.38
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 32 LPHIALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKT 91
+ + + LS + +KKE ++ + E +K + + +E + K AR + K
Sbjct: 266 VGQLWVFLLSYKLQKKEEQTLRTRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKILKD 325
Query: 92 FSQKSKK 98
+S
Sbjct: 326 YSSVEFL 332
>gnl|CDD|37481 KOG2270, KOG2270, KOG2270, Serine/threonine protein kinase involved
in cell cycle control [Signal transduction mechanisms,
Cell cycle control, cell division, chromosome
partitioning].
Length = 520
Score = 28.4 bits (63), Expect = 0.44
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 36 ALESLSAENEKKELSEHEKKVIESQENPKKQFSE-HEKKETDDPKSARKENIVMKKTFSQ 94
+L S E E +E E E +E + KK+T K RK+ + K +
Sbjct: 441 SLGEDSVEEEDGSEAESEGSEEEGEEGDEDIREHAKRKKKTAREKKERKKKVKEAKREKR 500
Query: 95 KSKKY 99
K+K
Sbjct: 501 KTKIP 505
>gnl|CDD|145808 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 28.0 bits (63), Expect = 0.61
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 41 SAENEKKELSEHEKKVIESQENPKKQFSEHEKK 73
+AE E++ L E +K+ + E ++ + EH K+
Sbjct: 215 AAEAEQELLREKQKEEEQMMEAQERSYQEHVKQ 247
>gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit.
Length = 1070
Score = 26.8 bits (60), Expect = 1.5
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 40 LSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPK---SARKENIVMKKTFSQK 95
LS N+K EKK I S+EN +F + DP S KE + KK F Q+
Sbjct: 205 LSFLNDK------EKKKIGSKENAILEFYQQFACVGGDPVFSESLCKE--LQKKFFQQR 255
>gnl|CDD|36359 KOG1144, KOG1144, KOG1144, Translation initiation factor 5B
(eIF-5B) [Translation, ribosomal structure and
biogenesis].
Length = 1064
Score = 26.5 bits (58), Expect = 1.7
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 36 ALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQK 95
AL E E+++ E E+ E +E +++ E +++E K +KE KK +
Sbjct: 222 ALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEA---KEKKKEKEKEKKERKKA 278
Query: 96 SKKY 99
K
Sbjct: 279 EGKL 282
>gnl|CDD|36167 KOG0949, KOG0949, KOG0949, Predicted helicase, DEAD-box superfamily
[General function prediction only].
Length = 1330
Score = 26.5 bits (58), Expect = 2.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 34 HIALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKEN 85
H LES+ E +K +L E KK + + +K K+ KS + +N
Sbjct: 871 HRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKN 922
>gnl|CDD|36247 KOG1029, KOG1029, KOG1029, Endocytic adaptor protein intersectin
[Signal transduction mechanisms, Intracellular
trafficking, secretion, and vesicular transport].
Length = 1118
Score = 25.4 bits (55), Expect = 3.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 42 AENEKKELSEHEKKVIESQENPKKQFSEHEKK 73
E E+KE E EKK E QE +K E EK+
Sbjct: 345 EEVEQKEREEEEKKERERQEQERKAQLELEKQ 376
Score = 24.7 bits (53), Expect = 6.0
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 43 ENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKK 98
E E+K E EK+ +E Q ++Q E KKE + ++AR+E ++ +++++
Sbjct: 364 EQERKAQLELEKQ-LERQREIERQREEERKKEIERREAAREELEKQRQLEWERARR 418
>gnl|CDD|35327 KOG0104, KOG0104, KOG0104, Molecular chaperones GRP170/SIL1, HSP70
superfamily [Posttranslational modification, protein
turnover, chaperones].
Length = 902
Score = 25.4 bits (55), Expect = 4.7
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 45 EKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKEN 85
E + S E+ E P ++ E+ E D + + E
Sbjct: 560 ETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEK 600
>gnl|CDD|38023 KOG2812, KOG2812, KOG2812, Uncharacterized conserved protein
[Function unknown].
Length = 426
Score = 25.1 bits (54), Expect = 5.2
Identities = 12/57 (21%), Positives = 30/57 (52%)
Query: 41 SAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSK 97
++ +KE + +KK ++ KK+ S+ KKE+ + + + ++ + +S+K
Sbjct: 240 DVKDREKEKKKKKKKKANKEKKEKKKRSKKSKKESSESSLKKSKEMISEAEWSEKVD 296
>gnl|CDD|146092 pfam03285, Paralemmin, Paralemmin.
Length = 270
Score = 25.0 bits (54), Expect = 5.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 46 KKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKKYT 100
KK++ E E K E +E ++ E E+ ET ++ KEN+ + +++ K T
Sbjct: 2 KKQMQEDEAKTRELEETIQRLERELEELETGVSLTSTKENLAEPSSPAKEEVKET 56
>gnl|CDD|110005 pfam00972, Flavi_NS5, Flavivirus RNA-directed RNA polymerase.
Flaviviruses produce a polyprotein from the ssRNA
genome. This protein is also known as NS5. This
RNA-directed RNA polymerase possesses a number of short
regions and motifs homologous to other RNA-directed RNA
polymerases.
Length = 649
Score = 24.8 bits (54), Expect = 6.0
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 50 SEHEKKVIESQENPKKQFSEHEKKETDDPKSA 81
E+E QE+P + + H T SA
Sbjct: 36 EEYETTWHYDQEHPYRTWHYHGSYVTKQTGSA 67
>gnl|CDD|37783 KOG2572, KOG2572, KOG2572, Ribosome biogenesis protein -
Nop58p/Nop5p [RNA processing and modification,
Translation, ribosomal structure and biogenesis].
Length = 498
Score = 25.0 bits (54), Expect = 6.0
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 38 ESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSK 97
E + +KK E + ES + +K+ + +K + + + KK S+K K
Sbjct: 441 EGSKEKKKKKAKKLGEGEEEESSKKKEKKEKKAKKAKKPAKEEKKPAK---KKKKSKKKK 497
Query: 98 K 98
K
Sbjct: 498 K 498
>gnl|CDD|37229 KOG2018, KOG2018, KOG2018, Predicted dinucleotide-utilizing enzyme
involved in molybdopterin and thiamine biosynthesis
[Posttranslational modification, protein turnover,
chaperones].
Length = 430
Score = 24.5 bits (53), Expect = 6.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 46 KKELSEHEKKVIESQENPKKQFSE 69
K E EHE +V+E E + + E
Sbjct: 390 KNEADEHEDRVLEEVEELETVYFE 413
>gnl|CDD|177252 MTH00209, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 564
Score = 24.6 bits (54), Expect = 7.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 2 KKYFTILTMLFVSS 15
KK F +L +LF+ S
Sbjct: 82 KKRFILLVLLFILS 95
>gnl|CDD|144455 pfam00865, Osteopontin, Osteopontin.
Length = 311
Score = 24.3 bits (52), Expect = 7.8
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 23 EEDNLKSSPLPHIALESLSAENEK------KELSEHEKKVIESQENPK-------KQFSE 69
E+D+ ++S L ++E+ S E K + S VI+SQE+ K +F
Sbjct: 218 EKDSHETSQLDDQSVETHSREQSKEYKRKANDESNEHSDVIDSQESSKVSQEHQSHEFHS 277
Query: 70 HEKKETDDPKSARKEN 85
HE K DPKS ++
Sbjct: 278 HEDKLVLDPKSKEEDR 293
>gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein
that regulates K(+) uptake [Inorganic ion transport and
metabolism].
Length = 1018
Score = 24.2 bits (52), Expect = 9.0
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 26 NLKSSPLPHIALESLSAENEKKELSEHEKKV-IESQENPKKQFSEHEKKETDDPKSARKE 84
+L L H+A E E++ E E++ IE + ++ E EK + + R+E
Sbjct: 817 DLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREE 876
Query: 85 NIVMKK 90
K
Sbjct: 877 YRERTK 882
>gnl|CDD|177096 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 24.3 bits (53), Expect = 9.6
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 35 IALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKK-ETDDPKSARKENIVMKKTFS 93
I +E+ + E ++ + E + N + S EK E D +S K+ K+ S
Sbjct: 1518 IEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKS 1577
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.308 0.126 0.350
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,386,906
Number of extensions: 59110
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 78
Length of query: 122
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,491,799
Effective search space: 179671960
Effective search space used: 179671960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.7 bits)