BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780981|ref|YP_003065394.1| hypothetical protein
CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780981|ref|YP_003065394.1| hypothetical protein CLIBASIA_04410 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 122

 Score =  250 bits (638), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MKKYFTILTMLFVSSAINPCGIEEDNLKSSPLPHIALESLSAENEKKELSEHEKKVIESQ 60
           MKKYFTILTMLFVSSAINPCGIEEDNLKSSPLPHIALESLSAENEKKELSEHEKKVIESQ
Sbjct: 1   MKKYFTILTMLFVSSAINPCGIEEDNLKSSPLPHIALESLSAENEKKELSEHEKKVIESQ 60

Query: 61  ENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKKYTPYFDHYMTNGHLNLPQNNGH 120
           ENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKKYTPYFDHYMTNGHLNLPQNNGH
Sbjct: 61  ENPKKQFSEHEKKETDDPKSARKENIVMKKTFSQKSKKYTPYFDHYMTNGHLNLPQNNGH 120

Query: 121 RY 122
           RY
Sbjct: 121 RY 122


>gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 125

 Score = 45.8 bits (107), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 1  MKKYFTILTMLFVSSAIN---------PCGIEEDNLKSSPLPHIA--LESLSAENEK--K 47
          MKKY T+LT+L +S+ +N         P    E+ + +   P  +  L  L AENEK  K
Sbjct: 1  MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60

Query: 48 ELSEHEKKVIESQENPKKQFSEHEKKETDD 77
          E  +  +++    EN KK F EHEKK T +
Sbjct: 61 EFDKITRELNTLSENEKKAFFEHEKKVTSN 90


>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 294

 Score = 30.4 bits (67), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 3   KYFTILT----MLFVSSAINPCGIEED-NLKSSPLPHIALESLSA----ENEKKELSEHE 53
           KYFT L     ++ V+  INP G+ ED ++ S P PH  +   +A    EN +K L+  +
Sbjct: 89  KYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALD 148

Query: 54  KKVIESQENPKKQFSE 69
               +  E   +++SE
Sbjct: 149 PSNAKKYELNAREYSE 164


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 22.3 bits (46), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 90  KTFSQKSKKYTPYFDHY 106
           ++ SQ   +YT  FDHY
Sbjct: 664 RSMSQGRGQYTMIFDHY 680


>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 805

 Score = 22.3 bits (46), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 25  DNLKSSPLPHIALESLSAENEKKELSEHEKKVIESQ 60
           D +KS PLP   +E     + ++  + + K+V+ S+
Sbjct: 470 DQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASR 505


>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 503

 Score = 21.2 bits (43), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 47 KELSEHEKKVIESQ-ENPKKQFSEHEKKETDDPKSA--RKENIVM 88
          ++ ++ E+ +++ + +N K   +  + KE+D PKS+   KENI +
Sbjct: 52 RQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFL 96


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 884

 Score = 21.2 bits (43), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 77 DPKSARKENIVMKKTFSQKS 96
          D K  +K N+V KKT + K+
Sbjct: 3  DNKDNKKSNVVEKKTLTLKT 22


>gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 20.8 bits (42), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 35 IALESLSAENEKKELSEHEKKVIESQENPKKQFSEHEKK 73
          I    LSA++    +++  K + E  + P+K  +  EKK
Sbjct: 52 IVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKK 90


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.308    0.126    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,151
Number of Sequences: 1233
Number of extensions: 3136
Number of successful extensions: 18
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 122
length of database: 328,796
effective HSP length: 64
effective length of query: 58
effective length of database: 249,884
effective search space: 14493272
effective search space used: 14493272
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 33 (17.3 bits)