HHsearch alignment for GI: 254780982 and conserved domain: pfam05758
>pfam05758 Ycf1 Ycf1. The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.
Probab=96.36 E-value=0.044 Score=28.03 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=74.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999994899479999999983-1028899999999977669999999977-7553074788867689999999999
Q gi|254780982|r 9 FLIFTLIITSAPGPGNILTINHALQ-HGWRPNKILILGQETAVFIIMLSITMGT-KFLSQLAYTMLIIKFLGVAWLIYSA 86 (202)
Q Consensus 9 ~~~~~~~~~~~PGP~~~~~i~~~~~-~G~~~~~~~~~G~~~g~~~~~~~~~~g~-~~l~~~~~~~~~l~~~G~~yL~~lg 86 (202)
T Consensus 6 GLYYGFLTTfsIGPSylfllRa~vmeegtek~vsAttGfItGQL~mfiSIYYaPLhlaL~rPHtITvL~---lPYllf~f 82 (832)
T pfam05758 6 GLYYGFLTTFSIGPSYLFLLRARVLEEGTEKKVSATTGFITGQLIMFISIYYAPLYLALGRPHTITVLA---LPYLLFHF 82 (832)
T ss_pred EHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHH
T ss_conf 728779887265458999999998625776626887307888999999998899999974553308999---99999999
Q ss_pred HHHHHCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99741246778-------7101356788899998789863274257887866676524
Q gi|254780982|r 87 WSAWYSPFNDL-------PLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLN 137 (202)
Q Consensus 87 ~~~~~~~~~~~-------~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~ 137 (202)
T Consensus 83 f--~~n~k~f~~~~s~~~~~nSmrn~~iq~vFLnnlIfQL~N~~--iLPss~LaRLvn 136 (832)
T pfam05758 83 F--WNNHKDFFDYGSSLTPRNSMRNLSIQCVFLNNLIFQLLNPF--ILPSSVLARLVN 136 (832)
T ss_pred H--HCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCHH--HCCCHHHHHHHH
T ss_conf 7--40665556654455642000124589999998999970413--157689998776