Query gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 202
No_of_seqs 115 out of 3554
Neff 8.3
Searched_HMMs 23785
Date Tue May 31 23:10:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780982.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_L Photosystem 1 reaction 9.2 70 0.0029 11.0 7.6 87 43-129 49-138 (154)
2 2i68_A Protein EMRE; transmemb 8.0 79 0.0033 10.7 4.8 23 68-91 80-102 (137)
3 3lb6_A Interleukin-13, IL-13; 7.3 75 0.0032 10.9 0.0 17 7-23 7-23 (132)
4 2zxe_G FXYD10, phospholemman-l 6.0 1E+02 0.0043 10.2 3.8 21 73-93 21-41 (74)
5 1xio_A Anabaena sensory rhodop 4.9 1.2E+02 0.0052 9.8 11.7 36 1-39 1-36 (261)
6 2l34_A TYRO protein tyrosine k 4.1 1.6E+02 0.0066 9.3 3.6 20 42-61 8-27 (33)
7 2cfq_A Lactose permease; trans 3.8 1.7E+02 0.0072 9.1 7.3 175 22-196 120-307 (417)
8 1wty_A Hypothetical protein TT 3.2 2.1E+02 0.0089 8.6 3.2 42 85-129 37-79 (119)
9 2knc_A Integrin alpha-IIB; tra 2.9 2.4E+02 0.0099 8.4 4.6 40 66-105 9-54 (54)
10 2w8a_A Glycine betaine transpo 2.6 2.7E+02 0.011 8.1 6.4 104 7-110 426-532 (566)
No 1
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1
Probab=9.16 E-value=70 Score=11.02 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999776699999999777553074788867689999999999997412467---787101356788899998789863
Q gi|254780982|r 43 ILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFN---DLPLGEIPLSSKSKLFVKGFITDI 119 (202)
Q Consensus 43 ~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~---~~~~~~~~~~~~~~~f~~G~~v~l 119 (202)
-+|++-|++++.=.+.+|=--=.+.....-.+.-+|...++-.+..++-+... ..+.++...+..++.|..||++.-
T Consensus 49 EiGmAHGYfL~GPF~~lGPLRnt~~a~laGllsaiglv~Ilt~~LslYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~iGg 128 (154)
T 1jb0_L 49 EVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGA 128 (154)
T ss_dssp HHHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 77242000154547750467683278888999999999999999999746656889998100327014888601212221
Q ss_pred CCCHHHHHHH
Q ss_conf 2742578878
Q gi|254780982|r 120 TNGKAWAFFM 129 (202)
Q Consensus 120 ~NPka~~f~~ 129 (202)
.---.+.+++
T Consensus 129 ~gGa~~Ay~L 138 (154)
T 1jb0_L 129 MGSAFVAFFL 138 (154)
T ss_dssp HHHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 5389999999
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=7.95 E-value=79 Score=10.75 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 478886768999999999999741
Q gi|254780982|r 68 AYTMLIIKFLGVAWLIYSAWSAWY 91 (202)
Q Consensus 68 ~~~~~~l~~~G~~yL~~lg~~~~~ 91 (202)
.+-.+..+++|.. |+-.|+-..+
T Consensus 80 ~E~ls~~~ilgi~-LIi~GVv~Ln 102 (137)
T 2i68_A 80 GQRLDLPAIIGMM-LICAGVLIIN 102 (137)
T ss_dssp C------CHHHHH-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHH-HHHHHHHHEE
T ss_conf 7999899999999-9999998222
No 3
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=7.28 E-value=75 Score=10.86 Aligned_cols=17 Identities=24% Similarity=0.213 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCCHH
Q ss_conf 99999999999489947
Q gi|254780982|r 7 IHFLIFTLIITSAPGPG 23 (202)
Q Consensus 7 l~~~~~~~~~~~~PGP~ 23 (202)
..+.+.++....+|||.
T Consensus 7 ~Vial~Clgglasp~PV 23 (132)
T 3lb6_A 7 TVIALTCLGGFASPGPV 23 (132)
T ss_dssp -----------------
T ss_pred HHHHHHHHCCCCCCCCC
T ss_conf 99999984455789996
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.03 E-value=1e+02 Score=10.23 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 676899999999999974124
Q gi|254780982|r 73 IIKFLGVAWLIYSAWSAWYSP 93 (202)
Q Consensus 73 ~l~~~G~~yL~~lg~~~~~~~ 93 (202)
+-.++-+..|.-+|+-.+.+.
T Consensus 21 igGLi~a~vLf~~GI~iils~ 41 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHCC
T ss_conf 322067999999999999848
No 5
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=4.94 E-value=1.2e+02 Score=9.79 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999994899479999999983102889
Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPN 39 (202)
Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~ 39 (202)
||+++.+-...+..... |-..+...++..+.++|..
T Consensus 1 m~~~s~~~w~~~a~m~~---~~~~F~~~~~~~~~~~R~~ 36 (261)
T 1xio_A 1 MNLESLLHWIYVAGMTI---GALHFWSLSRNPRGVPQYE 36 (261)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHTSCTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCCCEEH
T ss_conf 93676899999999999---9999999964578763230
No 6
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=4.09 E-value=1.6e+02 Score=9.28 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999977669999999977
Q gi|254780982|r 42 LILGQETAVFIIMLSITMGT 61 (202)
Q Consensus 42 ~~~G~~~g~~~~~~~~~~g~ 61 (202)
+..|+..||....+.+..-+
T Consensus 8 vlagivlgdl~lt~lialav 27 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAV 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 55567888799999999999
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A
Probab=3.81 E-value=1.7e+02 Score=9.09 Aligned_cols=175 Identities=7% Similarity=-0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 47999999998310288999999999776699999999777553074788867689999999999997412467787101
Q gi|254780982|r 22 PGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGE 101 (202)
Q Consensus 22 P~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~ 101 (202)
+..........+..++++.........+..........+........+.................+...+..+++.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (417)
T 2cfq_A 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN 199 (417)
T ss_dssp TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 66665410100001678999999999999999986555023100033027999999999987788740123210011211
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHH-------------HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3567888999987898632742578878-------------666765247733399999999999999999999999999
Q gi|254780982|r 102 IPLSSKSKLFVKGFITDITNGKAWAFFM-------------AMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLIC 168 (202)
Q Consensus 102 ~~~~~~~~~f~~G~~v~l~NPka~~f~~-------------~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (202)
.++++..+.-.........+++...... ...+.+.................................
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (417)
T 2cfq_A 200 AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFA 279 (417)
T ss_dssp SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 22210222000101233345567889999999999999987777788888863011111011013443210011222224
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999996051389999999999999999
Q gi|254780982|r 169 SKLRTLFSSSKFVKIQNRVSAVVFLLLA 196 (202)
Q Consensus 169 ~~~~~~~~~~~~~~~in~i~g~~li~~a 196 (202)
.+..++..+.+....--.++++.+..++
T Consensus 280 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 280 PLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5431000037899999999999998862
No 8
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus HB8} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=3.21 E-value=2.1e+02 Score=8.63 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Q ss_conf 999974124677871013567888999987898632-742578878
Q gi|254780982|r 85 SAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDIT-NGKAWAFFM 129 (202)
Q Consensus 85 lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~-NPka~~f~~ 129 (202)
++|++.+.-.. .......+++..|+.++-..++ ++..|+-+.
T Consensus 37 laWK~lK~~L~---~~g~~~~spr~~~reA~~~glI~d~~~W~~~~ 79 (119)
T 1wty_A 37 LAWKTLKTFLE---LQGLEARSPRAAIRGAFQVGLLPEDPFWLEML 79 (119)
T ss_dssp HHHHHHHHHHH---HHTCCCSSHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999999---82976588599999998878889889999999
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=2.92 E-value=2.4e+02 Score=8.39 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHH----HHHHHH--HHCCCCCCCCCCCCCC
Q ss_conf 074788867689999999----999997--4124677871013567
Q gi|254780982|r 66 QLAYTMLIIKFLGVAWLI----YSAWSA--WYSPFNDLPLGEIPLS 105 (202)
Q Consensus 66 ~~~~~~~~l~~~G~~yL~----~lg~~~--~~~~~~~~~~~~~~~~ 105 (202)
+.|....++..+++..++ |.-|++ +++...+.+.++++..
T Consensus 9 ~vP~WiIivsv~~GlLlL~ll~~~LwK~GFFKR~rp~~~~~e~e~e 54 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPLEEDDEEGE 54 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCCCSSSCC
T ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCC
T ss_conf 8873046999999999999999999982731267998760443039
No 10
>2w8a_A Glycine betaine transporter BETP; chemosensor and osmosensor, trimer, membrane, cell membrane, membrane protein; 3.35A {Corynebacterium glutamicum} PDB: 2wit_A
Probab=2.58 E-value=2.7e+02 Score=8.07 Aligned_cols=104 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999994899479999999983102---88999999999776699999999777553074788867689999999
Q gi|254780982|r 7 IHFLIFTLIITSAPGPGNILTINHALQHGW---RPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLI 83 (202)
Q Consensus 7 l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~---~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~ 83 (202)
..++...+...+|---+..++++.-.++|. .+..+..=|...|-+...++...|...+......-.+...-=...++
T Consensus 426 ~l~~il~~iF~vTs~DS~s~vl~~~ts~g~~~P~~~~ri~W~v~~g~la~~Ll~~gG~~~l~alQ~~~ii~alPf~~i~~ 505 (566)
T 2w8a_A 426 IIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATPFLFVVI 505 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999962647999999997289999994467899999999999999976775899999999999988999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 999997412467787101356788899
Q gi|254780982|r 84 YSAWSAWYSPFNDLPLGEIPLSSKSKL 110 (202)
Q Consensus 84 ~lg~~~~~~~~~~~~~~~~~~~~~~~~ 110 (202)
.+.+..+|.-.++....+.+.+++.+.
T Consensus 506 l~~~sl~K~l~~d~~~~~~~~~~~~~~ 532 (566)
T 2w8a_A 506 GLMFALVKDLSNDVIYLEYREQQRFNA 532 (566)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999986377655788876420
Done!