Query         gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 202
No_of_seqs    115 out of 3554
Neff          8.3 
Searched_HMMs 13730
Date          Wed Jun  1 11:04:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780982.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1pv7a_ f.38.1.2 (A:) Lactose    9.0      41   0.003   11.0  13.8   10  166-175   277-286 (417)
  2 d1jb0l_ f.31.1.1 (L:) Photosys   8.7      42  0.0031   10.9   7.6   87   43-129    46-135 (151)
  3 d1wtya_ a.24.16.2 (A:) Probabl   3.6   1E+02  0.0076    9.0   3.2   48   81-131    32-80  (116)
  4 d1xioa_ f.13.1.1 (A:) Sensory    3.5 1.1E+02  0.0079    8.9  11.7   40    1-43      1-40  (226)
  5 d1h3oa_ a.22.1.3 (A:) TAF(II)-   2.8 1.4E+02   0.011    8.3   1.7   19   20-38     24-42  (50)
  6 d1v54c_ f.25.1.1 (C:) Mitochon   2.6 1.6E+02   0.012    8.0   7.6   58   76-135    42-99  (259)
  7 d1z0jb1 a.2.19.1 (B:734-784) F   2.2 1.9E+02   0.014    7.6   0.6   16  115-130     6-21  (51)
  8 d1q90g_ f.23.26.1 (G:) PetG su   1.9 2.3E+02   0.017    7.3   3.8   19   42-60      5-23  (30)
  9 d1i26a_ g.3.6.3 (A:) PTU-1 {As   1.9 2.1E+02   0.015    7.4  -0.2    5  121-125    21-25  (34)
 10 d2j8cl1 f.26.1.1 (L:1-281) L (   1.7 2.6E+02   0.019    6.9   3.3   67   69-135   173-242 (281)

No 1  
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.01  E-value=41  Score=10.99  Aligned_cols=10  Identities=0%  Similarity=0.052  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999996
Q gi|254780982|r  166 LICSKLRTLF  175 (202)
Q Consensus       166 ~~~~~~~~~~  175 (202)
                      ....+..++.
T Consensus       277 ~~~~~l~~r~  286 (417)
T d1pv7a_         277 FFAPLIINRI  286 (417)
T ss_dssp             TTHHHHHHHH
T ss_pred             HHHHHHHCCC
T ss_conf             2444420012


No 2  
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=8.68  E-value=42  Score=10.92  Aligned_cols=87  Identities=17%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999776699999999777553074788867689999999999997412467---787101356788899998789863
Q gi|254780982|r   43 ILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFN---DLPLGEIPLSSKSKLFVKGFITDI  119 (202)
Q Consensus        43 ~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~---~~~~~~~~~~~~~~~f~~G~~v~l  119 (202)
                      -+|++-|+.++.=.+..|---=.+.....-.+.-+|..-++-.+..++-+...   ..+.++...+..++.|..||++.-
T Consensus        46 EiGmAHGYfL~GPF~~lGPLRnt~~a~~aGllsaiglv~Ilt~~L~lYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~~Gg  125 (151)
T d1jb0l_          46 EVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGA  125 (151)
T ss_dssp             HHHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHH
T ss_pred             HHHHHCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHCC
T ss_conf             77232001265626650577683588888999999999999999999626667889998310337114888612102102


Q ss_pred             CCCHHHHHHH
Q ss_conf             2742578878
Q gi|254780982|r  120 TNGKAWAFFM  129 (202)
Q Consensus       120 ~NPka~~f~~  129 (202)
                      .---.+.+++
T Consensus       126 ~GGa~fAy~L  135 (151)
T d1jb0l_         126 MGSAFVAFFL  135 (151)
T ss_dssp             HHHHHHHHHH
T ss_pred             CCHHHHHHHH
T ss_conf             5389999999


No 3  
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]}
Probab=3.65  E-value=1e+02  Score=8.97  Aligned_cols=48  Identities=10%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Q ss_conf             9999999974124677871013567888999987898632-74257887866
Q gi|254780982|r   81 WLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDIT-NGKAWAFFMAM  131 (202)
Q Consensus        81 yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~-NPka~~f~~~~  131 (202)
                      |-.=++|++.+.-...   ......+++..++.++-..++ ++..|+-++-.
T Consensus        32 ~t~El~WK~lK~~L~~---~g~~~~spr~~~r~A~~~glI~d~~~W~~m~~~   80 (116)
T d1wtya_          32 FTFELAWKTLKTFLEL---QGLEARSPRAAIRGAFQVGLLPEDPFWLEMLEL   80 (116)
T ss_dssp             HHHHHHHHHHHHHHHH---HTCCCSSHHHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             9999999999999998---397557879999999886988988999999998


No 4  
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=3.53  E-value=1.1e+02  Score=8.89  Aligned_cols=40  Identities=13%  Similarity=0.213  Sum_probs=24.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9989999999999999948994799999999831028899999
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILI   43 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~   43 (202)
                      ||+++.+-...+....+   |-..+...++..+..+|......
T Consensus         1 m~~~s~~~wv~~~~m~~---~~~~f~~~~~~~~~~~r~~~~~~   40 (226)
T d1xioa_           1 MNLESLLHWIYVAGMTI---GALHFWSLSRNPRGVPQYEYLVA   40 (226)
T ss_dssp             CCHHHHHHHHHHHHHHH---HHHHHHHHHTSCTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             93575799999999999---99999999735776301467899


No 5  
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.78  E-value=1.4e+02  Score=8.25  Aligned_cols=19  Identities=21%  Similarity=0.261  Sum_probs=11.8

Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             9947999999998310288
Q gi|254780982|r   20 PGPGNILTINHALQHGWRP   38 (202)
Q Consensus        20 PGP~~~~~i~~~~~~G~~~   38 (202)
                      |+|+....++++.+...|.
T Consensus        24 ~~~dV~~lISHA~QeRLk~   42 (50)
T d1h3oa_          24 LHPDVVSYVSHATQQRLQN   42 (50)
T ss_dssp             ECTTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             6789999988999999999


No 6  
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.56  E-value=1.6e+02  Score=8.04  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             899999999999974124677871013567888999987898632742578878666765
Q gi|254780982|r   76 FLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAY  135 (202)
Q Consensus        76 ~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~f  135 (202)
                      .+|...+++..+.=||+..++...+....+...+.++-|+..=+.  ...+++.+.+..+
T Consensus        42 ~~gl~~~~~~~~~W~rdvi~E~~~~G~ht~~v~~~~~~G~~lFi~--SEv~~F~~~F~ay   99 (259)
T d1v54c_          42 MIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFII--SEVLFFTGFFWAF   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf             999999999999999988402323787528776401899999999--9999999999998


No 7  
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.17  E-value=1.9e+02  Score=7.61  Aligned_cols=16  Identities=31%  Similarity=0.403  Sum_probs=8.9

Q ss_pred             HHHHHCCCHHHHHHHH
Q ss_conf             8986327425788786
Q gi|254780982|r  115 FITDITNGKAWAFFMA  130 (202)
Q Consensus       115 ~~v~l~NPka~~f~~~  130 (202)
                      ++-++-|.|+++|-.-
T Consensus         6 llqqidnikayifdak   21 (51)
T d1z0jb1           6 LLQQIDNIKAYIFDAK   21 (51)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999887899973157


No 8  
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.91  E-value=2.3e+02  Score=7.28  Aligned_cols=19  Identities=11%  Similarity=0.099  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999997766999999997
Q gi|254780982|r   42 LILGQETAVFIIMLSITMG   60 (202)
Q Consensus        42 ~~~G~~~g~~~~~~~~~~g   60 (202)
                      ...|++.|.+-..++..|-
T Consensus         5 ll~GivlGlipiTl~Glfv   23 (30)
T d1q90g_           5 LLCGIVLGLVPVTIAGLFV   23 (30)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9876889527999999999


No 9  
>d1i26a_ g.3.6.3 (A:) PTU-1 {Assassin bug (Peirates turpis) [TaxId: 181095]}
Probab=1.90  E-value=2.1e+02  Score=7.44  Aligned_cols=5  Identities=60%  Similarity=1.431  Sum_probs=0.0

Q ss_pred             CCHHH
Q ss_conf             74257
Q gi|254780982|r  121 NGKAW  125 (202)
Q Consensus       121 NPka~  125 (202)
                      ||.+|
T Consensus        21 npraw   25 (34)
T d1i26a_          21 NPRAW   25 (34)
T ss_dssp             STTCC
T ss_pred             CHHHH
T ss_conf             74889


No 10 
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.67  E-value=2.6e+02  Score=6.95  Aligned_cols=67  Identities=12%  Similarity=0.112  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             788867689999999999997412467787101356788899998---7898632742578878666765
Q gi|254780982|r   69 YTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVK---GFITDITNGKAWAFFMAMVPAY  135 (202)
Q Consensus        69 ~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~---G~~v~l~NPka~~f~~~~~~~f  135 (202)
                      ....+.-+.|...+.-+-=....+..+...++|.++......|.+   |+-.+-..-+-+..|.++...+
T Consensus       173 HmlsI~fl~gsaLl~AmHGatIla~~~~g~~~e~~~~~~~~tF~R~~~G~s~~~~~IHR~~~~~av~~~~  242 (281)
T d2j8cl1         173 HMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSAVF  242 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCCCCHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             9999999998799998633450320058998342576663214431100103610779999999999999


Done!