Query gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 202 No_of_seqs 115 out of 3554 Neff 8.3 Searched_HMMs 13730 Date Wed Jun 1 11:04:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780982.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1pv7a_ f.38.1.2 (A:) Lactose 9.0 41 0.003 11.0 13.8 10 166-175 277-286 (417) 2 d1jb0l_ f.31.1.1 (L:) Photosys 8.7 42 0.0031 10.9 7.6 87 43-129 46-135 (151) 3 d1wtya_ a.24.16.2 (A:) Probabl 3.6 1E+02 0.0076 9.0 3.2 48 81-131 32-80 (116) 4 d1xioa_ f.13.1.1 (A:) Sensory 3.5 1.1E+02 0.0079 8.9 11.7 40 1-43 1-40 (226) 5 d1h3oa_ a.22.1.3 (A:) TAF(II)- 2.8 1.4E+02 0.011 8.3 1.7 19 20-38 24-42 (50) 6 d1v54c_ f.25.1.1 (C:) Mitochon 2.6 1.6E+02 0.012 8.0 7.6 58 76-135 42-99 (259) 7 d1z0jb1 a.2.19.1 (B:734-784) F 2.2 1.9E+02 0.014 7.6 0.6 16 115-130 6-21 (51) 8 d1q90g_ f.23.26.1 (G:) PetG su 1.9 2.3E+02 0.017 7.3 3.8 19 42-60 5-23 (30) 9 d1i26a_ g.3.6.3 (A:) PTU-1 {As 1.9 2.1E+02 0.015 7.4 -0.2 5 121-125 21-25 (34) 10 d2j8cl1 f.26.1.1 (L:1-281) L ( 1.7 2.6E+02 0.019 6.9 3.3 67 69-135 173-242 (281) No 1 >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Probab=9.01 E-value=41 Score=10.99 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=3.7 Q ss_pred HHHHHHHHHH Q ss_conf 9999999996 Q gi|254780982|r 166 LICSKLRTLF 175 (202) Q Consensus 166 ~~~~~~~~~~ 175 (202) ....+..++. T Consensus 277 ~~~~~l~~r~ 286 (417) T d1pv7a_ 277 FFAPLIINRI 286 (417) T ss_dssp TTHHHHHHHH T ss_pred HHHHHHHCCC T ss_conf 2444420012 No 2 >d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]} Probab=8.68 E-value=42 Score=10.92 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=42.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999776699999999777553074788867689999999999997412467---787101356788899998789863 Q gi|254780982|r 43 ILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFN---DLPLGEIPLSSKSKLFVKGFITDI 119 (202) Q Consensus 43 ~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~---~~~~~~~~~~~~~~~f~~G~~v~l 119 (202) -+|++-|+.++.=.+..|---=.+.....-.+.-+|..-++-.+..++-+... ..+.++...+..++.|..||++.- T Consensus 46 EiGmAHGYfL~GPF~~lGPLRnt~~a~~aGllsaiglv~Ilt~~L~lYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~~Gg 125 (151) T d1jb0l_ 46 EVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGA 125 (151) T ss_dssp HHHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHH T ss_pred HHHHHCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHCC T ss_conf 77232001265626650577683588888999999999999999999626667889998310337114888612102102 Q ss_pred CCCHHHHHHH Q ss_conf 2742578878 Q gi|254780982|r 120 TNGKAWAFFM 129 (202) Q Consensus 120 ~NPka~~f~~ 129 (202) .---.+.+++ T Consensus 126 ~GGa~fAy~L 135 (151) T d1jb0l_ 126 MGSAFVAFFL 135 (151) T ss_dssp HHHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 5389999999 No 3 >d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]} Probab=3.65 E-value=1e+02 Score=8.97 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH Q ss_conf 9999999974124677871013567888999987898632-74257887866 Q gi|254780982|r 81 WLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDIT-NGKAWAFFMAM 131 (202) Q Consensus 81 yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~-NPka~~f~~~~ 131 (202) |-.=++|++.+.-... ......+++..++.++-..++ ++..|+-++-. T Consensus 32 ~t~El~WK~lK~~L~~---~g~~~~spr~~~r~A~~~glI~d~~~W~~m~~~ 80 (116) T d1wtya_ 32 FTFELAWKTLKTFLEL---QGLEARSPRAAIRGAFQVGLLPEDPFWLEMLEL 80 (116) T ss_dssp HHHHHHHHHHHHHHHH---HTCCCSSHHHHHHHHHHHTSSCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 9999999999999998---397557879999999886988988999999998 No 4 >d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]} Probab=3.53 E-value=1.1e+02 Score=8.89 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=24.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9989999999999999948994799999999831028899999 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILI 43 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~ 43 (202) ||+++.+-...+....+ |-..+...++..+..+|...... T Consensus 1 m~~~s~~~wv~~~~m~~---~~~~f~~~~~~~~~~~r~~~~~~ 40 (226) T d1xioa_ 1 MNLESLLHWIYVAGMTI---GALHFWSLSRNPRGVPQYEYLVA 40 (226) T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHTSCTTCCHHHHHHH T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCCCHHHHHHH T ss_conf 93575799999999999---99999999735776301467899 No 5 >d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Probab=2.78 E-value=1.4e+02 Score=8.25 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=11.8 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 9947999999998310288 Q gi|254780982|r 20 PGPGNILTINHALQHGWRP 38 (202) Q Consensus 20 PGP~~~~~i~~~~~~G~~~ 38 (202) |+|+....++++.+...|. T Consensus 24 ~~~dV~~lISHA~QeRLk~ 42 (50) T d1h3oa_ 24 LHPDVVSYVSHATQQRLQN 42 (50) T ss_dssp ECTTHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 6789999988999999999 No 6 >d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]} Probab=2.56 E-value=1.6e+02 Score=8.04 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 899999999999974124677871013567888999987898632742578878666765 Q gi|254780982|r 76 FLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAY 135 (202) Q Consensus 76 ~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~f 135 (202) .+|...+++..+.=||+..++...+....+...+.++-|+..=+. ...+++.+.+..+ T Consensus 42 ~~gl~~~~~~~~~W~rdvi~E~~~~G~ht~~v~~~~~~G~~lFi~--SEv~~F~~~F~ay 99 (259) T d1v54c_ 42 MIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFII--SEVLFFTGFFWAF 99 (259) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH T ss_conf 999999999999999988402323787528776401899999999--9999999999998 No 7 >d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.17 E-value=1.9e+02 Score=7.61 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=8.9 Q ss_pred HHHHHCCCHHHHHHHH Q ss_conf 8986327425788786 Q gi|254780982|r 115 FITDITNGKAWAFFMA 130 (202) Q Consensus 115 ~~v~l~NPka~~f~~~ 130 (202) ++-++-|.|+++|-.- T Consensus 6 llqqidnikayifdak 21 (51) T d1z0jb1 6 LLQQIDNIKAYIFDAK 21 (51) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999887899973157 No 8 >d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=1.91 E-value=2.3e+02 Score=7.28 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=7.9 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999997766999999997 Q gi|254780982|r 42 LILGQETAVFIIMLSITMG 60 (202) Q Consensus 42 ~~~G~~~g~~~~~~~~~~g 60 (202) ...|++.|.+-..++..|- T Consensus 5 ll~GivlGlipiTl~Glfv 23 (30) T d1q90g_ 5 LLCGIVLGLVPVTIAGLFV 23 (30) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9876889527999999999 No 9 >d1i26a_ g.3.6.3 (A:) PTU-1 {Assassin bug (Peirates turpis) [TaxId: 181095]} Probab=1.90 E-value=2.1e+02 Score=7.44 Aligned_cols=5 Identities=60% Similarity=1.431 Sum_probs=0.0 Q ss_pred CCHHH Q ss_conf 74257 Q gi|254780982|r 121 NGKAW 125 (202) Q Consensus 121 NPka~ 125 (202) ||.+| T Consensus 21 npraw 25 (34) T d1i26a_ 21 NPRAW 25 (34) T ss_dssp STTCC T ss_pred CHHHH T ss_conf 74889 No 10 >d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]} Probab=1.67 E-value=2.6e+02 Score=6.95 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHH Q ss_conf 788867689999999999997412467787101356788899998---7898632742578878666765 Q gi|254780982|r 69 YTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVK---GFITDITNGKAWAFFMAMVPAY 135 (202) Q Consensus 69 ~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~---G~~v~l~NPka~~f~~~~~~~f 135 (202) ....+.-+.|...+.-+-=....+..+...++|.++......|.+ |+-.+-..-+-+..|.++...+ T Consensus 173 HmlsI~fl~gsaLl~AmHGatIla~~~~g~~~e~~~~~~~~tF~R~~~G~s~~~~~IHR~~~~~av~~~~ 242 (281) T d2j8cl1 173 HMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSAVF 242 (281) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCCCCHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHH T ss_conf 9999999998799998633450320058998342576663214431100103610779999999999999 Done!