RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine
lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
         (202 letters)



>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus
           SB} (A:)
          Length = 158

 Score = 27.8 bits (62), Expect = 1.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 13  TLIITSA-PGPGNILTINHALQHGWRPNKILILGQ---ETAVFII 53
           TLII+      G+ LT   A Q+  +P   + L +   E A  +I
Sbjct: 77  TLIISHGILKGGSALTEFFAEQYK-KPCLHIDLDRISIEDAATLI 120


>3i98_A TH-IPP; pyrophosphatase, beta barrel, hydrolase; 1.85A
           {Thermococcus thioreducens} PDB: 1ude_A 1twl_A (A:)
          Length = 178

 Score = 27.1 bits (60), Expect = 1.7
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 18/88 (20%)

Query: 92  SPFNDLPLG-----------EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNH 140
           +PF++L  G           EIP  S++K     +  D   G      +   P +  +++
Sbjct: 2   NPFHELEPGPEVPEVVYALIEIPKGSRNK-----YELDKKTGLLKLDRVLYSPFFYPVDY 56

Query: 141 YILPQSLILSLTMVSVDAMVLMTFSLIC 168
            I+PQ+          D MV+M   +  
Sbjct: 57  GIIPQT--WYDDGDPFDIMVIMREPVYP 82


>3da7_A Barnase circular permutant; circular permutant,
          protein-protein complex, endonuclease, cytoplasm,
          protein binding; 2.25A {Bacillus amyloliquefaciens}
          (A:)
          Length = 111

 Score = 26.3 bits (58), Expect = 3.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 22 PGNILTINHALQHGWRPNK 40
          P N +T + A   GW  +K
Sbjct: 66 PDNYITKSEAQALGWVASK 84


>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus
           HB8} (A:)
          Length = 174

 Score = 25.6 bits (56), Expect = 4.9
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 18/88 (20%)

Query: 92  SPFNDLPLG-----------EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNH 140
           +    LP+G           E+P  S +K     +  D   G      +     +   ++
Sbjct: 1   ANLKSLPVGDKAPEVVHMVIEVPRGSGNK-----YEYDPDLGAIKLDRVLPGAQFYPGDY 55

Query: 141 YILPQSLILSLTMVSVDAMVLMTFSLIC 168
             +P +  L+     +D +VL T+ L+ 
Sbjct: 56  GFIPST--LAEDGDPLDGLVLSTYPLLP 81


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.329    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,439,250
Number of extensions: 57597
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 8
Length of query: 202
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 118
Effective length of database: 2,116,429
Effective search space: 249738622
Effective search space used: 249738622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.0 bits)