RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] (202 letters) >3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} (A:) Length = 158 Score = 27.8 bits (62), Expect = 1.1 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%) Query: 13 TLIITSA-PGPGNILTINHALQHGWRPNKILILGQ---ETAVFII 53 TLII+ G+ LT A Q+ +P + L + E A +I Sbjct: 77 TLIISHGILKGGSALTEFFAEQYK-KPCLHIDLDRISIEDAATLI 120 >3i98_A TH-IPP; pyrophosphatase, beta barrel, hydrolase; 1.85A {Thermococcus thioreducens} PDB: 1ude_A 1twl_A (A:) Length = 178 Score = 27.1 bits (60), Expect = 1.7 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 18/88 (20%) Query: 92 SPFNDLPLG-----------EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNH 140 +PF++L G EIP S++K + D G + P + +++ Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNK-----YELDKKTGLLKLDRVLYSPFFYPVDY 56 Query: 141 YILPQSLILSLTMVSVDAMVLMTFSLIC 168 I+PQ+ D MV+M + Sbjct: 57 GIIPQT--WYDDGDPFDIMVIMREPVYP 82 >3da7_A Barnase circular permutant; circular permutant, protein-protein complex, endonuclease, cytoplasm, protein binding; 2.25A {Bacillus amyloliquefaciens} (A:) Length = 111 Score = 26.3 bits (58), Expect = 3.2 Identities = 7/19 (36%), Positives = 10/19 (52%) Query: 22 PGNILTINHALQHGWRPNK 40 P N +T + A GW +K Sbjct: 66 PDNYITKSEAQALGWVASK 84 >2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus HB8} (A:) Length = 174 Score = 25.6 bits (56), Expect = 4.9 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 92 SPFNDLPLG-----------EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNH 140 + LP+G E+P S +K + D G + + ++ Sbjct: 1 ANLKSLPVGDKAPEVVHMVIEVPRGSGNK-----YEYDPDLGAIKLDRVLPGAQFYPGDY 55 Query: 141 YILPQSLILSLTMVSVDAMVLMTFSLIC 168 +P + L+ +D +VL T+ L+ Sbjct: 56 GFIPST--LAEDGDPLDGLVLSTYPLLP 81 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.329 0.139 0.426 Gapped Lambda K H 0.267 0.0654 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,439,250 Number of extensions: 57597 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 8 Length of query: 202 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 118 Effective length of database: 2,116,429 Effective search space: 249738622 Effective search space used: 249738622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 52 (24.0 bits)