Query gi|254780983|ref|YP_003065396.1| hypothetical protein CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 55 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 19:51:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780983.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2hc5_A ORF 99, hypothetical p 23.0 32 0.00093 16.7 1.0 22 34-55 23-44 (59) 2 >3h3l_A Putative sugar hydrola 18.9 75 0.0022 14.6 2.2 20 31-50 74-93 (241) 3 >3imm_A Putative secreted glyc 13.0 1.1E+02 0.0033 13.7 2.2 22 29-50 42-63 (201) 4 >1ytm_A Phosphoenolpyruvate ca 12.7 94 0.0028 14.1 1.4 16 15-30 121-136 (249) 5 >1wf0_A TDP-43, TAR DNA-bindin 10.7 1.3E+02 0.0039 13.3 1.9 27 24-50 56-82 (88) 6 >2z6o_A UFM1-conjugating enzym 10.7 1.3E+02 0.0039 13.3 1.7 16 32-47 23-38 (69) 7 >3hbk_A Putative glycosyl hydr 9.5 1.5E+02 0.0044 13.0 2.2 19 32-50 83-101 (245) 8 >3kpa_A Probable ubiquitin fol 9.2 1.5E+02 0.0045 12.9 1.7 17 31-47 22-38 (66) 9 >2id0_A Exoribonuclease 2; RNA 8.2 1.7E+02 0.005 12.7 1.6 18 37-54 11-28 (64) 10 >2qoj_Z Intron-encoded DNA end 7.9 78 0.0023 14.5 -0.5 20 32-51 6-25 (101) No 1 >>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} (A:30-88) Probab=22.97 E-value=32 Score=16.69 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=17.9 Q ss_pred CCEEEEEEEECCCCCCCEEEEC Q ss_conf 4414578873367886236869 Q gi|254780983|r 34 KNYQARLEFSIPKDSNDLYIKL 55 (55) Q Consensus 34 knyqarlefsipkdsndlyikl 55 (55) +..+..|+|++-++++.+++|. T Consensus 23 ~~~n~~l~F~v~e~~~~~vVkV 44 (59) T 2hc5_A 23 EPSQVHLKFELHDKLNEYYVKV 44 (59) T ss_dssp TTSSCCEEEEEEEETTEEEEEE T ss_pred HHCCCCEEEEEECCCCCEEEEE T ss_conf 8539704999966889899999 No 2 >>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503} (A:) Probab=18.91 E-value=75 Score=14.63 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.2 Q ss_pred CCCCCEEEEEEEECCCCCCC Q ss_conf 43244145788733678862 Q gi|254780983|r 31 YSFKNYQARLEFSIPKDSND 50 (55) Q Consensus 31 ysfknyqarlefsipkdsnd 50 (55) -.|+||+.++||.++..+|. T Consensus 74 ~~y~df~l~~e~k~~~~~ns 93 (241) T 3h3l_A 74 KKFKNFVFEIEWKIDKAGNS 93 (241) T ss_dssp SCBSSEEEEEEEEECBTCEE T ss_pred CCCCCEEEEEEEEECCCCCC T ss_conf 43352899999997788655 No 3 >>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase, structural genomics; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} (A:) Probab=13.00 E-value=1.1e+02 Score=13.68 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=17.9 Q ss_pred CCCCCCCEEEEEEEECCCCCCC Q ss_conf 7543244145788733678862 Q gi|254780983|r 29 NPYSFKNYQARLEFSIPKDSND 50 (55) Q Consensus 29 npysfknyqarlefsipkdsnd 50 (55) ..-+|+||..++||.++..+|. T Consensus 42 t~~~~~df~l~~e~r~~~~~ns 63 (201) T 3imm_A 42 TKDEYENFELDLDFKTDVGTNS 63 (201) T ss_dssp ESSCBCSEEEEEEEEECTTCEE T ss_pred ECCEEEEEEEEEEEEECCCCCC T ss_conf 7441501999999998889982 No 4 >>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A (A:14-201,A:277-337) Probab=12.73 E-value=94 Score=14.09 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 9999999999963475 Q gi|254780983|r 15 IGYIAEFMKMMFIKNP 30 (55) Q Consensus 15 igyiaefmkmmfiknp 30 (55) ..|.|-||+.|||.-+ T Consensus 121 ~AwhaLF~~nMfiRPt 136 (249) T 1ytm_A 121 VAWQAHFVTNMFIRPT 136 (249) T ss_dssp CHHHHHHHHHHSBCCC T ss_pred HHHHHHHHHHHCCCCC T ss_conf 1038899987356873 No 5 >>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} (A:) Probab=10.74 E-value=1.3e+02 Score=13.27 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.9 Q ss_pred HHHHCCCCCCCCEEEEEEEECCCCCCC Q ss_conf 996347543244145788733678862 Q gi|254780983|r 24 MMFIKNPYSFKNYQARLEFSIPKDSND 50 (55) Q Consensus 24 mmfiknpysfknyqarlefsipkdsnd 50 (55) ..-++|+..+.+...+++++.|++.++ T Consensus 56 ~~A~~n~~~~~g~~i~v~~a~~~~~~~ 82 (88) T 1wf0_A 56 QSLCGEDLIIKGISVHISNAEPKHNSN 82 (88) T ss_dssp HHTTTCEEEETTEEEEEECCCCCCCCC T ss_pred HHHHHCCCEECCEEEEEEECCCCCCCC T ss_conf 999749898999997999677888898 No 6 >>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A (A:57-117,A:165-172) Probab=10.69 E-value=1.3e+02 Score=13.26 Aligned_cols=16 Identities=31% Similarity=0.656 Sum_probs=12.4 Q ss_pred CCCCEEEEEEEECCCC Q ss_conf 3244145788733678 Q gi|254780983|r 32 SFKNYQARLEFSIPKD 47 (55) Q Consensus 32 sfknyqarlefsipkd 47 (55) ..+.|.-.+||.||-. T Consensus 23 nl~kYeF~~eFdIPvt 38 (69) T 2z6o_A 23 DLLKYEFDIEFDIPIT 38 (69) T ss_dssp TTEEEEEEEEEECCTT T ss_pred EEEEEEEEEEECCCCC T ss_conf 3067888887316777 No 7 >>3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of unknown function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503} (A:) Probab=9.51 E-value=1.5e+02 Score=13.01 Aligned_cols=19 Identities=16% Similarity=0.559 Sum_probs=15.9 Q ss_pred CCCCEEEEEEEECCCCCCC Q ss_conf 3244145788733678862 Q gi|254780983|r 32 SFKNYQARLEFSIPKDSND 50 (55) Q Consensus 32 sfknyqarlefsipkdsnd 50 (55) +|+||..++||..+..+|- T Consensus 83 ~f~df~l~~e~k~~~~~ns 101 (245) T 3hbk_A 83 EYSAFEFSVDFKITEGANS 101 (245) T ss_dssp CBSSEEEEEEEEECTTCEE T ss_pred CCCCEEEEEEEEECCCCCC T ss_conf 2344799999998889986 No 8 >>3kpa_A Probable ubiquitin fold modifier conjugating enzyme; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} (A:59-104,A:149-168) Probab=9.23 E-value=1.5e+02 Score=12.95 Aligned_cols=17 Identities=29% Similarity=0.641 Sum_probs=13.1 Q ss_pred CCCCCEEEEEEEECCCC Q ss_conf 43244145788733678 Q gi|254780983|r 31 YSFKNYQARLEFSIPKD 47 (55) Q Consensus 31 ysfknyqarlefsipkd 47 (55) +..+.|.-.+||.||-. T Consensus 22 hnl~kYEFdleFdIPvt 38 (66) T 3kpa_A 22 YKNEKYEFEXNFDIPVT 38 (66) T ss_dssp ETTEEEEEEEEEECCTT T ss_pred EECEEEEEEEECCCCCC T ss_conf 50224677642367776 No 9 >>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:20-83) Probab=8.21 E-value=1.7e+02 Score=12.70 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=14.0 Q ss_pred EEEEEEECCCCCCCEEEE Q ss_conf 457887336788623686 Q gi|254780983|r 37 QARLEFSIPKDSNDLYIK 54 (55) Q Consensus 37 qarlefsipkdsndlyik 54 (55) +...-|-+|.|.+|+||. T Consensus 11 ~~GfgFv~~d~~~DifIp 28 (64) T 2id0_A 11 EKGFGFLEVDAQKSYFIP 28 (64) T ss_dssp SSSCEEEECSSSCEEEEC T ss_pred CCCEEEEEECCCCCEEEC T ss_conf 894289975898888999 No 10 >>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing endonuclease, hydrolase, intron homing, mitochondrion, mRNA processing, mRNA splicing; 2.40A {Emericella nidulans} PDB: 1p8k_Z 3eh8_A (Z:17-117) Probab=7.92 E-value=78 Score=14.53 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=12.8 Q ss_pred CCCCEEEEEEEECCCCCCCE Q ss_conf 32441457887336788623 Q gi|254780983|r 32 SFKNYQARLEFSIPKDSNDL 51 (55) Q Consensus 32 sfknyqarlefsipkdsndl 51 (55) |..+++.+++|+|.....|. T Consensus 6 s~~~~~v~~~f~i~q~~~d~ 25 (101) T 2qoj_Z 6 TKKGKYLTYELGIELSIKDV 25 (101) T ss_dssp EEETTEEEEEEEEEEEGGGH T ss_pred EECCCEEEEEEEEEEECCCH T ss_conf 62896886899999825629 Done!