Query         gi|254780983|ref|YP_003065396.1| hypothetical protein CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 19:51:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780983.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2hc5_A ORF 99, hypothetical p  23.0      32 0.00093   16.7   1.0   22   34-55     23-44  (59)
  2 >3h3l_A Putative sugar hydrola  18.9      75  0.0022   14.6   2.2   20   31-50     74-93  (241)
  3 >3imm_A Putative secreted glyc  13.0 1.1E+02  0.0033   13.7   2.2   22   29-50     42-63  (201)
  4 >1ytm_A Phosphoenolpyruvate ca  12.7      94  0.0028   14.1   1.4   16   15-30    121-136 (249)
  5 >1wf0_A TDP-43, TAR DNA-bindin  10.7 1.3E+02  0.0039   13.3   1.9   27   24-50     56-82  (88)
  6 >2z6o_A UFM1-conjugating enzym  10.7 1.3E+02  0.0039   13.3   1.7   16   32-47     23-38  (69)
  7 >3hbk_A Putative glycosyl hydr   9.5 1.5E+02  0.0044   13.0   2.2   19   32-50     83-101 (245)
  8 >3kpa_A Probable ubiquitin fol   9.2 1.5E+02  0.0045   12.9   1.7   17   31-47     22-38  (66)
  9 >2id0_A Exoribonuclease 2; RNA   8.2 1.7E+02   0.005   12.7   1.6   18   37-54     11-28  (64)
 10 >2qoj_Z Intron-encoded DNA end   7.9      78  0.0023   14.5  -0.5   20   32-51      6-25  (101)

No 1  
>>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} (A:30-88)
Probab=22.97  E-value=32  Score=16.69  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=17.9

Q ss_pred             CCEEEEEEEECCCCCCCEEEEC
Q ss_conf             4414578873367886236869
Q gi|254780983|r   34 KNYQARLEFSIPKDSNDLYIKL   55 (55)
Q Consensus        34 knyqarlefsipkdsndlyikl   55 (55)
                      +..+..|+|++-++++.+++|.
T Consensus        23 ~~~n~~l~F~v~e~~~~~vVkV   44 (59)
T 2hc5_A           23 EPSQVHLKFELHDKLNEYYVKV   44 (59)
T ss_dssp             TTSSCCEEEEEEEETTEEEEEE
T ss_pred             HHCCCCEEEEEECCCCCEEEEE
T ss_conf             8539704999966889899999


No 2  
>>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503} (A:)
Probab=18.91  E-value=75  Score=14.63  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=17.2

Q ss_pred             CCCCCEEEEEEEECCCCCCC
Q ss_conf             43244145788733678862
Q gi|254780983|r   31 YSFKNYQARLEFSIPKDSND   50 (55)
Q Consensus        31 ysfknyqarlefsipkdsnd   50 (55)
                      -.|+||+.++||.++..+|.
T Consensus        74 ~~y~df~l~~e~k~~~~~ns   93 (241)
T 3h3l_A           74 KKFKNFVFEIEWKIDKAGNS   93 (241)
T ss_dssp             SCBSSEEEEEEEEECBTCEE
T ss_pred             CCCCCEEEEEEEEECCCCCC
T ss_conf             43352899999997788655


No 3  
>>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase, structural genomics; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} (A:)
Probab=13.00  E-value=1.1e+02  Score=13.68  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=17.9

Q ss_pred             CCCCCCCEEEEEEEECCCCCCC
Q ss_conf             7543244145788733678862
Q gi|254780983|r   29 NPYSFKNYQARLEFSIPKDSND   50 (55)
Q Consensus        29 npysfknyqarlefsipkdsnd   50 (55)
                      ..-+|+||..++||.++..+|.
T Consensus        42 t~~~~~df~l~~e~r~~~~~ns   63 (201)
T 3imm_A           42 TKDEYENFELDLDFKTDVGTNS   63 (201)
T ss_dssp             ESSCBCSEEEEEEEEECTTCEE
T ss_pred             ECCEEEEEEEEEEEEECCCCCC
T ss_conf             7441501999999998889982


No 4  
>>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A (A:14-201,A:277-337)
Probab=12.73  E-value=94  Score=14.09  Aligned_cols=16  Identities=31%  Similarity=0.673  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             9999999999963475
Q gi|254780983|r   15 IGYIAEFMKMMFIKNP   30 (55)
Q Consensus        15 igyiaefmkmmfiknp   30 (55)
                      ..|.|-||+.|||.-+
T Consensus       121 ~AwhaLF~~nMfiRPt  136 (249)
T 1ytm_A          121 VAWQAHFVTNMFIRPT  136 (249)
T ss_dssp             CHHHHHHHHHHSBCCC
T ss_pred             HHHHHHHHHHHCCCCC
T ss_conf             1038899987356873


No 5  
>>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} (A:)
Probab=10.74  E-value=1.3e+02  Score=13.27  Aligned_cols=27  Identities=11%  Similarity=0.176  Sum_probs=22.9

Q ss_pred             HHHHCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             996347543244145788733678862
Q gi|254780983|r   24 MMFIKNPYSFKNYQARLEFSIPKDSND   50 (55)
Q Consensus        24 mmfiknpysfknyqarlefsipkdsnd   50 (55)
                      ..-++|+..+.+...+++++.|++.++
T Consensus        56 ~~A~~n~~~~~g~~i~v~~a~~~~~~~   82 (88)
T 1wf0_A           56 QSLCGEDLIIKGISVHISNAEPKHNSN   82 (88)
T ss_dssp             HHTTTCEEEETTEEEEEECCCCCCCCC
T ss_pred             HHHHHCCCEECCEEEEEEECCCCCCCC
T ss_conf             999749898999997999677888898


No 6  
>>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A (A:57-117,A:165-172)
Probab=10.69  E-value=1.3e+02  Score=13.26  Aligned_cols=16  Identities=31%  Similarity=0.656  Sum_probs=12.4

Q ss_pred             CCCCEEEEEEEECCCC
Q ss_conf             3244145788733678
Q gi|254780983|r   32 SFKNYQARLEFSIPKD   47 (55)
Q Consensus        32 sfknyqarlefsipkd   47 (55)
                      ..+.|.-.+||.||-.
T Consensus        23 nl~kYeF~~eFdIPvt   38 (69)
T 2z6o_A           23 DLLKYEFDIEFDIPIT   38 (69)
T ss_dssp             TTEEEEEEEEEECCTT
T ss_pred             EEEEEEEEEEECCCCC
T ss_conf             3067888887316777


No 7  
>>3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of unknown function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503} (A:)
Probab=9.51  E-value=1.5e+02  Score=13.01  Aligned_cols=19  Identities=16%  Similarity=0.559  Sum_probs=15.9

Q ss_pred             CCCCEEEEEEEECCCCCCC
Q ss_conf             3244145788733678862
Q gi|254780983|r   32 SFKNYQARLEFSIPKDSND   50 (55)
Q Consensus        32 sfknyqarlefsipkdsnd   50 (55)
                      +|+||..++||..+..+|-
T Consensus        83 ~f~df~l~~e~k~~~~~ns  101 (245)
T 3hbk_A           83 EYSAFEFSVDFKITEGANS  101 (245)
T ss_dssp             CBSSEEEEEEEEECTTCEE
T ss_pred             CCCCEEEEEEEEECCCCCC
T ss_conf             2344799999998889986


No 8  
>>3kpa_A Probable ubiquitin fold modifier conjugating enzyme; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} (A:59-104,A:149-168)
Probab=9.23  E-value=1.5e+02  Score=12.95  Aligned_cols=17  Identities=29%  Similarity=0.641  Sum_probs=13.1

Q ss_pred             CCCCCEEEEEEEECCCC
Q ss_conf             43244145788733678
Q gi|254780983|r   31 YSFKNYQARLEFSIPKD   47 (55)
Q Consensus        31 ysfknyqarlefsipkd   47 (55)
                      +..+.|.-.+||.||-.
T Consensus        22 hnl~kYEFdleFdIPvt   38 (66)
T 3kpa_A           22 YKNEKYEFEXNFDIPVT   38 (66)
T ss_dssp             ETTEEEEEEEEEECCTT
T ss_pred             EECEEEEEEEECCCCCC
T ss_conf             50224677642367776


No 9  
>>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:20-83)
Probab=8.21  E-value=1.7e+02  Score=12.70  Aligned_cols=18  Identities=11%  Similarity=0.226  Sum_probs=14.0

Q ss_pred             EEEEEEECCCCCCCEEEE
Q ss_conf             457887336788623686
Q gi|254780983|r   37 QARLEFSIPKDSNDLYIK   54 (55)
Q Consensus        37 qarlefsipkdsndlyik   54 (55)
                      +...-|-+|.|.+|+||.
T Consensus        11 ~~GfgFv~~d~~~DifIp   28 (64)
T 2id0_A           11 EKGFGFLEVDAQKSYFIP   28 (64)
T ss_dssp             SSSCEEEECSSSCEEEEC
T ss_pred             CCCEEEEEECCCCCEEEC
T ss_conf             894289975898888999


No 10 
>>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing endonuclease, hydrolase, intron homing, mitochondrion, mRNA processing, mRNA splicing; 2.40A {Emericella nidulans} PDB: 1p8k_Z 3eh8_A (Z:17-117)
Probab=7.92  E-value=78  Score=14.53  Aligned_cols=20  Identities=20%  Similarity=0.169  Sum_probs=12.8

Q ss_pred             CCCCEEEEEEEECCCCCCCE
Q ss_conf             32441457887336788623
Q gi|254780983|r   32 SFKNYQARLEFSIPKDSNDL   51 (55)
Q Consensus        32 sfknyqarlefsipkdsndl   51 (55)
                      |..+++.+++|+|.....|.
T Consensus         6 s~~~~~v~~~f~i~q~~~d~   25 (101)
T 2qoj_Z            6 TKKGKYLTYELGIELSIKDV   25 (101)
T ss_dssp             EEETTEEEEEEEEEEEGGGH
T ss_pred             EECCCEEEEEEEEEEECCCH
T ss_conf             62896886899999825629


Done!