RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780983|ref|YP_003065396.1| hypothetical protein
CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>gnl|CDD|146339 pfam03646, FlaG, FlaG protein.  Although important for flagella
          the exact function of this protein is unknown.
          Length = 108

 Score = 25.3 bits (56), Expect = 3.6
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 11/37 (29%)

Query: 18 IAEFMKMMFIKNPYSFKNYQARLEFSIPKDSNDLYIK 54
          + +F++ +              LEFS+ +DS  + +K
Sbjct: 47 LNKFLQSL-----------NTNLEFSVDEDSGRVVVK 72


>gnl|CDD|34009 COG4287, PqaA, PhoPQ-activated pathogenicity-related protein
           [General function prediction only].
          Length = 507

 Score = 24.6 bits (53), Expect = 6.3
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 13/47 (27%)

Query: 20  EFMKMMFIKNPYSFKNYQARLEFSIPK-------------DSNDLYI 53
            F +++ I +P +++N + +L  ++PK             DS +LY 
Sbjct: 306 LFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYY 352


>gnl|CDD|39283 KOG4080, KOG4080, KOG4080, Mitochondrial ribosomal protein L32
           [Translation, ribosomal structure and biogenesis].
          Length = 176

 Score = 24.2 bits (52), Expect = 7.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 6   LCKFCTQTVIGYIAEFMKMMFIKNPYSFK 34
           LC +C   V    +E  K M I+ PY  +
Sbjct: 108 LCDYCYAKVHKETSEIKKKMMIQEPYVGE 136


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0768    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 662,318
Number of extensions: 23671
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 6
Length of query: 55
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 27
Effective length of database: 5,658,685
Effective search space: 152784495
Effective search space used: 152784495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.0 bits)