RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780983|ref|YP_003065396.1| hypothetical protein
CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>gnl|CDD|148193 pfam06439, DUF1080, Domain of Unknown Function (DUF1080). 
          Length = 176

 Score = 25.3 bits (56), Expect = 3.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 32 SFKNYQARLEFSIPKDSN 49
           F +++  LEF IP   N
Sbjct: 44 KFGDFELHLEFKIPPGGN 61


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 848,304
Number of extensions: 35127
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 8
Length of query: 55
Length of database: 5,994,473
Length adjustment: 27
Effective length of query: 28
Effective length of database: 5,411,057
Effective search space: 151509596
Effective search space used: 151509596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.3 bits)