RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780983|ref|YP_003065396.1| hypothetical protein
CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG,
          PSI, protein structure initiative, joint center for
          structural genomics, hydrolase; 1.90A {Thermotoga
          maritima} (A:)
          Length = 204

 Score = 25.3 bits (55), Expect = 2.9
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 5  ALCKFCTQTVIGYIAEFMKMMFI 27
           L    T  V+G      +++F+
Sbjct: 34 PLHLNRTNVVVGEGNLDTRIVFV 56


>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer
          cluster, thermophIle, structural genomics, NPPSFA; HET:
          DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A*
          2dem_A* 2dp6_A* (A:)
          Length = 219

 Score = 25.4 bits (55), Expect = 3.2
 Identities = 2/22 (9%), Positives = 8/22 (36%)

Query: 6  LCKFCTQTVIGYIAEFMKMMFI 27
             +  + V G+     +++  
Sbjct: 35 GEPYWARPVPGFGDPEARILLF 56


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.329    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 406,014
Number of extensions: 12908
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 5
Length of query: 55
Length of database: 4,956,049
Length adjustment: 25
Effective length of query: 30
Effective length of database: 4,110,924
Effective search space: 123327720
Effective search space used: 123327720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)