Query gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 125 No_of_seqs 2 out of 4 Neff 1.1 Searched_HMMs 33803 Date Wed Jun 1 21:29:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780984.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2kdd_A Borealin; protein dime 26.0 29 0.00085 16.2 1.2 10 44-53 61-70 (76) 2 >3hja_A GAPDH, glyceraldehyde- 23.2 19 0.00057 17.2 -0.1 26 28-53 160-185 (189) 3 >1r9d_A Glycerol dehydratase; 17.8 73 0.0022 13.9 2.2 46 37-82 149-200 (216) 4 >2ao9_A Phage protein; structu 16.5 60 0.0018 14.4 1.2 13 46-58 29-41 (90) 5 >1xeq_A Nonstructural protein 12.5 1E+02 0.003 13.0 4.2 52 45-96 45-96 (103) 6 >1t07_A Hypothetical UPF0269 p 12.2 97 0.0029 13.1 1.3 11 15-25 55-65 (94) 7 >2d2i_A Glyceraldehyde 3-phosp 12.1 42 0.0012 15.3 -0.6 33 29-61 141-177 (215) 8 >3g9k_L Capsule biosynthesis p 10.3 1.2E+02 0.0036 12.6 1.3 46 8-53 21-66 (101) 9 >2vla_A Bpuji, restriction end 9.9 1.2E+02 0.0037 12.5 2.5 21 72-92 108-128 (132) 10 >2jd6_0 Ferritin homolog, ferr 9.7 1.2E+02 0.0035 12.6 1.1 29 47-75 46-74 (101) No 1 >>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} (A:) Probab=26.05 E-value=29 Score=16.23 Aligned_cols=10 Identities=60% Similarity=1.075 Sum_probs=6.8 Q ss_pred HHHHHHHHHH Q ss_conf 3679999963 Q gi|254780984|r 44 YSSRLAQLCA 53 (125) Q Consensus 44 yssrlaqlca 53 (125) .|+||+|+|. T Consensus 61 Ls~rL~q~C~ 70 (76) T 2kdd_A 61 LSNRLAQICS 70 (76) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999987 No 2 >>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} (A:1-172,A:340-356) Probab=23.24 E-value=19 Score=17.25 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.4 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 77664345565407763679999963 Q gi|254780984|r 28 PTYGSEERIATCAKPGYSSRLAQLCA 53 (125) Q Consensus 28 ptygseeriatcakpgyssrlaqlca 53 (125) -+|..+.+|-++|.-|||.|...|.. T Consensus 160 ~~y~~~~~IISnA~~~~~~~~~~~~~ 185 (189) T 3hja_A 160 HDINSDLKAVSNAEFGYSTRVVDLAQ 185 (189) T ss_dssp GGCCTTCCEEECCTHHHHHHHHHHHH T ss_pred CCCCCCCCEEECCHHHHHHHHHHHHH T ss_conf 43465541564275999999999999 No 3 >>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} (A:24-128,A:168-278) Probab=17.83 E-value=73 Score=13.86 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=32.8 Q ss_pred HHHHCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 65407763679999963------00799999999999876248367899998 Q gi|254780984|r 37 ATCAKPGYSSRLAQLCA------ENEKRLKEFDKITRELNTLSENEKKAFFE 82 (125) Q Consensus 37 atcakpgyssrlaqlca------enekrlkefdkITR~~~~L~~~~KKAFF~ 82 (125) +.-+--.|..|.|++|. .+++|.+|...|-.-+.++|.+.-+.|.+ T Consensus 149 ~l~aii~~a~rya~lA~~~Ae~e~d~~rk~EL~~iA~~~~~vp~~pp~TF~E 200 (216) T 1r9d_A 149 SCEAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVSGEGAKSFYE 200 (216) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCCCSHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 9999999999999999999875538899999999999975464568878999 No 4 >>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} (A:1-90) Probab=16.53 E-value=60 Score=14.36 Aligned_cols=13 Identities=38% Similarity=0.233 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHH Q ss_conf 7999996300799 Q gi|254780984|r 46 SRLAQLCAENEKR 58 (125) Q Consensus 46 srlaqlcaenekr 58 (125) -+-||||++||-- T Consensus 29 r~AA~llv~NEl~ 41 (90) T 2ao9_A 29 IQAAYLLVENELM 41 (90) T ss_dssp HHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999988760 No 5 >>1xeq_A Nonstructural protein NS1; RNA binding domain, NS1B, structural genomics, PSI, protein structure initiative; 2.10A {Influenza b virus} (A:) Probab=12.52 E-value=1e+02 Score=13.01 Aligned_cols=52 Identities=29% Similarity=0.241 Sum_probs=43.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 6799999630079999999999987624836789999878777751686732 Q gi|254780984|r 45 SSRLAQLCAENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNAR 96 (125) Q Consensus 45 ssrlaqlcaenekrlkefdkITR~~~~L~~~~KKAFF~HEKKV~~~LNYNA~ 96 (125) ..||..|-..-+.|+|.-.||.-+..|.|-.++||.=-.--||---.|-.|| T Consensus 45 q~rl~rlk~kl~s~ikt~nk~epe~kr~sle~~kaigvkm~k~llf~~psag 96 (103) T 1xeq_A 45 QDRLHRLKRKLESRIKTHNKSEPENKRMSLEERKAIGVKMMKVLLFMDPSAG 96 (103) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCCCHHHHHHHHHHHHHHHTTCCCCSS T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCC T ss_conf 5579999999987535877677103331377754231746544205466657 No 6 >>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} (A:) Probab=12.24 E-value=97 Score=13.12 Aligned_cols=11 Identities=36% Similarity=0.494 Sum_probs=3.6 Q ss_pred HHHHHHHHHHH Q ss_conf 77777533332 Q gi|254780984|r 15 NVLNLYDAKAR 25 (125) Q Consensus 15 nvlnlydakar 25 (125) +-||+.|+++| T Consensus 55 ~rLnl~dp~~R 65 (94) T 1t07_A 55 RRLNXXNAEDR 65 (94) T ss_dssp HTCCTTSHHHH T ss_pred CCCCCCCHHHH T ss_conf 35787987899 No 7 >>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A (A:1-153,A:319-380) Probab=12.11 E-value=42 Score=15.26 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=23.5 Q ss_pred CCCCHH-HHHHHHCCCHHHHH---HHHHHHHHHHHHH Q ss_conf 766434-55654077636799---9996300799999 Q gi|254780984|r 29 TYGSEE-RIATCAKPGYSSRL---AQLCAENEKRLKE 61 (125) Q Consensus 29 tygsee-riatcakpgyssrl---aqlcaenekrlke 61 (125) .|..++ +|-.+|.-|||.|. |.|.|....||.- T Consensus 141 ~yd~~~h~IISnA~~~~~~~~~~~~~~~~~~~~~~~~ 177 (215) T 2d2i_A 141 EYRHEDFAVISNAEWGYSQRVVDLAELAARKSGRLGL 177 (215) T ss_dssp GCCTTTCSEEECCTHHHHHHHHHHHHHHHTTCC---- T ss_pred EECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCE T ss_conf 2303551389548289999999999999975520462 No 8 >>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional center of excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_L* (L:223-323) Probab=10.27 E-value=1.2e+02 Score=12.57 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 9999998777775333320777664345565407763679999963 Q gi|254780984|r 8 LTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCA 53 (125) Q Consensus 8 ltvllisnvlnlydakarrfptygseeriatcakpgyssrlaqlca 53 (125) .+++.+-|+|.-++...--+-....-.+++.+.|-+|..|...++- T Consensus 21 ~~~l~~L~ile~~~~~~~~~~~~~~~h~~~Ea~k~A~~~R~~~lgD 66 (101) T 3g9k_L 21 VTLLQXLKLAEKKEVYKDVDHTATYXSKXEEISRIAYQDRKKNLGD 66 (101) T ss_dssp HHHHHHHHHHHHTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999975237843358998999999999999999999985779 No 9 >>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus} (A:1-100,A:254-285) Probab=9.92 E-value=1.2e+02 Score=12.49 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=13.0 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 483678999987877775168 Q gi|254780984|r 72 LSENEKKAFFEHEKKVTSNLN 92 (125) Q Consensus 72 L~~~~KKAFF~HEKKV~~~LN 92 (125) .|+|.||.||..-...-+|.| T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~ 128 (132) T 2vla_A 108 TSEDDKKSFFKDWQQYYSNVN 128 (132) T ss_dssp TCHHHHHHHHHHHHHHHHCC- T ss_pred CCHHHHHHHHHHHHHHHHHCC T ss_conf 748889989999999986013 No 10 >>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 (0:74-174) Probab=9.74 E-value=1.2e+02 Score=12.60 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 99999630079999999999987624836 Q gi|254780984|r 47 RLAQLCAENEKRLKEFDKITRELNTLSEN 75 (125) Q Consensus 47 rlaqlcaenekrlkefdkITR~~~~L~~~ 75 (125) -|-....|.-+..+++..|-.-+.+..++ T Consensus 46 FL~~Fi~EQvee~~~~~~~l~~l~~~g~~ 74 (101) T 2jd6_0 46 FLEWFINEQVEEEASVKKILDKLKFAKDS 74 (101) T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999999999999970787 Done!