Query gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs 2 out of 4
Neff 1.1
Searched_HMMs 23785
Date Tue May 31 23:24:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780984.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdd_A Borealin; protein dimer 23.3 25 0.001 15.7 1.2 10 44-53 61-70 (76)
2 1xeq_A Nonstructural protein N 12.5 71 0.003 13.0 4.2 52 45-96 45-96 (103)
3 2ao9_A Phage protein; structur 11.9 67 0.0028 13.2 1.2 45 46-90 29-85 (155)
4 3m6j_A Uncharacterized protein 10.7 82 0.0034 12.7 2.4 44 33-76 85-136 (145)
5 1uvj_A P2 protein; polymerase/ 10.4 31 0.0013 15.1 -0.9 18 108-125 182-206 (664)
6 2cpm_A Sperm-associated antige 10.4 75 0.0032 12.9 1.1 23 42-64 3-25 (94)
7 1j5w_A Glycyl-tRNA synthetase 9.9 88 0.0037 12.5 2.0 59 11-73 178-236 (298)
8 2wjv_D Regulator of nonsense t 8.3 1E+02 0.0043 12.1 2.1 26 51-76 5-30 (97)
9 1z96_A DNA-damage, UBA-domain 7.0 1.2E+02 0.0049 11.7 1.3 15 41-55 1-15 (40)
10 1xs8_A UPF0269 protein YGGX; h 7.0 1.2E+02 0.0049 11.7 1.2 18 51-68 47-64 (91)
No 1
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=23.30 E-value=25 Score=15.74 Aligned_cols=10 Identities=60% Similarity=1.075 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q ss_conf 3679999963
Q gi|254780984|r 44 YSSRLAQLCA 53 (125)
Q Consensus 44 yssrlaqlca 53 (125)
.|+||+|+|.
T Consensus 61 Ls~rL~q~C~ 70 (76)
T 2kdd_A 61 LSNRLAQICS 70 (76)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999987
No 2
>1xeq_A Nonstructural protein NS1; RNA binding domain, NS1B, structural genomics, PSI, protein structure initiative; 2.10A {Influenza b virus} SCOP: a.16.1.1
Probab=12.52 E-value=71 Score=13.01 Aligned_cols=52 Identities=29% Similarity=0.241 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6799999630079999999999987624836789999878777751686732
Q gi|254780984|r 45 SSRLAQLCAENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNAR 96 (125)
Q Consensus 45 ssrlaqlcaenekrlkefdkITR~~~~L~~~~KKAFF~HEKKV~~~LNYNA~ 96 (125)
..||..|-..-+.|+|.-.||.-+..|.|-.++||.=-.--||---.|-.||
T Consensus 45 q~rl~rlk~kl~s~ikt~nk~epe~kr~sle~~kaigvkm~k~llf~~psag 96 (103)
T 1xeq_A 45 QDRLHRLKRKLESRIKTHNKSEPENKRMSLEERKAIGVKMMKVLLFMDPSAG 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCCCHHHHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCC
T ss_conf 5579999999987535877677103331377754231746544205466657
No 3
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=11.94 E-value=67 Score=13.16 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHH----HHCC--HHHHHHHHHHHHHHHHH
Q ss_conf 799999630079999------999999987----6248--36789999878777751
Q gi|254780984|r 46 SRLAQLCAENEKRLK------EFDKITREL----NTLS--ENEKKAFFEHEKKVTSN 90 (125)
Q Consensus 46 srlaqlcaenekrlk------efdkITR~~----~~L~--~~~KKAFF~HEKKV~~~ 90 (125)
-+-||||++||---. ..+.|.-++ ++|- +.|.|+|.+--.-+|+.
T Consensus 29 r~AA~llv~nEi~~~n~g~k~T~~eiAeEvGvsr~TLy~Wk~qnk~Fi~Y~n~lAd~ 85 (155)
T 2ao9_A 29 IQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADS 85 (155)
T ss_dssp HHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999998754346773364799999995746999998860587799999999999
No 4
>3m6j_A Uncharacterized protein; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics; 1.90A {Leptospirillum rubarum}
Probab=10.70 E-value=82 Score=12.65 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=31.0
Q ss_pred HHHHHHHHCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 345565407763679999--------96300799999999999876248367
Q gi|254780984|r 33 EERIATCAKPGYSSRLAQ--------LCAENEKRLKEFDKITRELNTLSENE 76 (125)
Q Consensus 33 eeriatcakpgyssrlaq--------lcaenekrlkefdkITR~~~~L~~~~ 76 (125)
-|+|+.|..-----|++| -|++-+--++.||-..+++.++-+|-
T Consensus 85 iE~l~~~~~l~~lvr~~r~~L~~~Yp~C~P~~~Ll~~lD~v~~~L~r~r~~~ 136 (145)
T 3m6j_A 85 IETISECDRLKNLVRNVTDTLVENYPQGLESEALLIALDGVKLELARIRKDI 136 (145)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8888764578999999999999538874609999999899999999998617
No 5
>1uvj_A P2 protein; polymerase/complex, RNA-dependent RNA polymerase, oligonucleotide, polymerase; 1.9A {Bacteriophage phi-6} SCOP: e.8.1.6 PDB: 1hht_P* 1hi0_P* 1hi1_A* 1hi8_A 1uvi_A 1hhs_A 1uvk_A* 1uvl_A 1uvm_A 1uvn_A* 2jl9_A 2jlg_A* 2jlf_A* 1wac_A
Probab=10.41 E-value=31 Score=15.11 Aligned_cols=18 Identities=44% Similarity=0.923 Sum_probs=12.0
Q ss_pred HHCCEE-------CCCCHHHHHCCC
Q ss_conf 201501-------167112100149
Q gi|254780984|r 108 ARGKYR-------YGNGYYRNYRSQ 125 (125)
Q Consensus 108 AR~KYR-------ygngyyrnyrsq 125 (125)
+.|+|+ +|.-||+.||.|
T Consensus 182 ~kg~y~~af~~~d~~g~yY~~y~~q 206 (664)
T 1uvj_A 182 LQGKFDDAYQLHQMGGAYYVVYRAQ 206 (664)
T ss_dssp HTTCHHHHHHHHCCCSCEEEEEEEE
T ss_pred HCCCHHHHHHHCCCCCCEEEEHHHC
T ss_conf 2341466565302465257651321
No 6
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=10.40 E-value=75 Score=12.87 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76367999996300799999999
Q gi|254780984|r 42 PGYSSRLAQLCAENEKRLKEFDK 64 (125)
Q Consensus 42 pgyssrlaqlcaenekrlkefdk 64 (125)
-||+++-+++|.+-|+.|..|-+
T Consensus 3 ~G~~~~r~~f~~~ve~~l~~fv~ 25 (94)
T 2cpm_A 3 SGSSGQKVEFRKRMEKEVSDFIQ 25 (94)
T ss_dssp SCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77347789999999999999983
No 7
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=9.90 E-value=88 Score=12.48 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999877777533332077766434556540776367999996300799999999999876248
Q gi|254780984|r 11 LLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLKEFDKITRELNTLS 73 (125)
Q Consensus 11 llisnvlnlydakarrfptygseeriatcakpgyssrlaqlcaenekrlkefdkITR~~~~L~ 73 (125)
..|.+|-|.||-.--.--|||.--.-.. ---|+..---|..+.-++.||..-.+..+|-
T Consensus 178 MylQ~vdnv~Dl~w~~~vtYGDif~q~E----~E~S~YNFe~ad~~~L~~~F~~~E~Ea~rLl 236 (298)
T 1j5w_A 178 MYLQGVDNVYEVQWNENVKYGDVFLENE----REFSVFNFEEANVGLLFRHFDEYEKEFYRLV 236 (298)
T ss_dssp HHHHTCSSGGGCEEETTEEHHHHHHHHH----HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHCCCCCCCCCHHHHHHHHH----HHHHHHCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9984873350300579974327753558----9998855353399999999999999999998
No 8
>2wjv_D Regulator of nonsense transcripts 2; UPF2, zinc, UPF1, helicase, hydrolase, cytoplasm, zinc-finger, ATP-binding, RNA-binding, coiled coil; 2.85A {Homo sapiens}
Probab=8.35 E-value=1e+02 Score=12.11 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 96300799999999999876248367
Q gi|254780984|r 51 LCAENEKRLKEFDKITRELNTLSENE 76 (125)
Q Consensus 51 lcaenekrlkefdkITR~~~~L~~~~ 76 (125)
-|+|.+.-.+||+|+.-+--.-.+.|
T Consensus 5 pc~Ed~eF~ref~kMm~ES~~sRk~E 30 (97)
T 2wjv_D 5 PCVEDEDFIQALDKMMLENLQQRSGE 30 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88148999999999999989886235
No 9
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=7.00 E-value=1.2e+02 Score=11.74 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 776367999996300
Q gi|254780984|r 41 KPGYSSRLAQLCAEN 55 (125)
Q Consensus 41 kpgyssrlaqlcaen 55 (125)
.||..|.+|||..-.
T Consensus 1 dpglnskiaqlvsmg 15 (40)
T 1z96_A 1 DPGLNSKIAQLVSMG 15 (40)
T ss_dssp --CHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCC
T ss_conf 963647999999817
No 10
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=6.97 E-value=1.2e+02 Score=11.73 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 963007999999999998
Q gi|254780984|r 51 LCAENEKRLKEFDKITRE 68 (125)
Q Consensus 51 lcaenekrlkefdkITR~ 68 (125)
.---||+||.-.|.-.|.
T Consensus 47 tmLINE~rLnl~~~~~r~ 64 (91)
T 1xs8_A 47 TMLINEKKLNMMNAEHRK 64 (91)
T ss_dssp HHHHHHHCCCTTSHHHHH
T ss_pred HHHCCCCCCCCCCHHHHH
T ss_conf 743120357979978999
Done!