RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780984|ref|YP_003065397.1| hypothetical protein
CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>gnl|CDD|35465 KOG0244, KOG0244, KOG0244, Kinesin-like protein [Cytoskeleton].
          Length = 913

 Score = 29.2 bits (65), Expect = 0.32
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 12  LISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLKEFDKITRELNT 71
            +   L   +   RR      E+   + AK  Y S    L AE      E  ++  ELN 
Sbjct: 478 ELEKRLAEKEPLTRRK---AYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNV 534

Query: 72  LSENEKKAFFEHEKKVTSNLNYNARDRKHNINQ 104
            +    K   E  +K+ S     +  +K   +Q
Sbjct: 535 FNRLAAKLGEERVQKLKSLETQISLLKKKLSSQ 567


>gnl|CDD|38556 KOG3346, KOG3346, KOG3346, Phosphatidylethanolamine binding protein
           [General function prediction only].
          Length = 185

 Score = 26.8 bits (59), Expect = 1.7
 Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)

Query: 81  FEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGN 116
           +    ++ S+          N  +F +   KY  G 
Sbjct: 128 YRQPGRLDSDEPSPLSRGNFNTRKFAK---KYELGT 160


>gnl|CDD|145378 pfam02191, OLF, Olfactomedin-like domain. 
          Length = 250

 Score = 26.4 bits (59), Expect = 2.0
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 11/43 (25%)

Query: 81  FEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYRNYR 123
           F +     S L+YN RDRK            Y + NGY   Y 
Sbjct: 214 FPNRYGYISMLDYNPRDRK-----------LYAWDNGYQLTYD 245


>gnl|CDD|113603 pfam04837, MbeB_N, MbeB-like, N-term conserved region.  This family
           represents an N-terminal conserved region of MbeB/MobB
           proteins. These proteins are essential for specific
           plasmid transfer.
          Length = 52

 Score = 26.2 bits (58), Expect = 2.7
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 46  SRLAQLCAENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNI 102
           S++  L    E++ KE      +  +  E  K AF +HEK V   L  + ++    I
Sbjct: 2   SKILDLAKTFEQKSKE------QAESTEEMVKSAFEKHEKSVREALKESEKNISDAI 52


>gnl|CDD|32136 COG1953, FUI1, Cytosine/uracil/thiamine/allantoin permeases
           [Nucleotide transport and metabolism / Coenzyme
           metabolism].
          Length = 497

 Score = 25.9 bits (57), Expect = 3.4
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 92  NYNARDRKHNINQFYEARGKYRYGNGYYRNYR 123
            +  R  + N+++ Y   G+Y Y  G+  N+R
Sbjct: 409 YFLVRKGRLNLDELYTEPGEYYYYGGW--NWR 438


>gnl|CDD|38748 KOG3540, KOG3540, KOG3540, Beta amyloid precursor protein [General
           function prediction only].
          Length = 615

 Score = 25.8 bits (56), Expect = 3.4
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 56  EKRLKEFDKITRE---LNTLSEN---EKKAFFEHEKKVTSNLNYNARDRKHNINQFYEAR 109
           EK  K  DK+ +E     T ++N   EK+A  +H +K  S+L   A   +  + + +EAR
Sbjct: 260 EKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQLVETHEAR 319


>gnl|CDD|100271 CHL00171, cpcB, phycocyanin beta subunit; Reviewed.
          Length = 172

 Score = 25.7 bits (56), Expect = 3.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 48 LAQLCAENEKRLKEFDKITRELNTLSENEKKAFFEHEKKV 87
          L+++ AE  KRL   +KI    +T+  N  ++ F  + ++
Sbjct: 27 LSKMVAEGNKRLDAVNKINANASTIVTNAARSLFAEQPQL 66


>gnl|CDD|88581 cd05395, RasGAP_RASA4, Ras GTPase activating-like 4 protein
           (RASAL4), also known as Ca2+ -promoted Ras inactivator
           (CAPRI), is a member of the GAP1 family. Members of the
           GAP1 family are characterized by a conserved domain
           structure comprising N-terminal tandem C2 domains, a
           highly conserved central RasGAP domain, and a C-terminal
           pleckstrin-homology domain that is associated with a
           Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a
           cytosolic protein that undergoes a rapid translocation
           to the plasma membrane in response to a
           receptor-mediated elevation in the concentration of
           intracellular free Ca2+ ([Ca2+]i). However, unlike
           RASAL, RASAL4 does not sense oscillations in [Ca2+]i..
          Length = 337

 Score = 25.4 bits (55), Expect = 4.8
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 24  ARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLKEFDKITRELNTLSENE 76
           A+   T G+ + +A  AK  +   L     +   +LK+F  ITR +N     E
Sbjct: 238 AKAVQTVGNMDTLACRAKEPWMVPLQPAIQQGITQLKDF--ITRLVNCEESEE 288


>gnl|CDD|153278 cd07594, BAR_Endophilin_B, The Bin/Amphiphysin/Rvs (BAR) domain of
           Endophilin-B.  BAR domains are dimerization, lipid
           binding and curvature sensing modules found in many
           different proteins with diverse functions. Endophilins
           play roles in synaptic vesicle formation, virus budding,
           mitochondrial morphology maintenance, receptor-mediated
           endocytosis inhibition, and endosomal sorting.
           Endophilins contain an N-terminal N-BAR domain (BAR
           domain with an additional N-terminal amphipathic helix),
           followed by a variable region containing proline
           clusters, and a C-terminal SH3 domain. They are
           classified into two types, A and B. Vertebrates contain
           two endophilin-B isoforms. Endophilin-B proteins are
           cytoplasmic proteins expressed mainly in the heart,
           placenta, and skeletal muscle.
          Length = 229

 Score = 25.4 bits (56), Expect = 4.8
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 33  EERIATCAKPGYSSRLAQLCAENEKRLKEFDKITREL-NTLSENEKKAFFEHEKKVTSNL 91
           EE++ T  K  Y +    L    +K     +KI ++    L  N        E  +   L
Sbjct: 4   EEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEAVLQPN---PNVRVEDFIYEKL 60

Query: 92  NYNARDRKHNINQFYEA 108
           +    DR  N+ Q  +A
Sbjct: 61  DRKKPDRLSNLEQLGQA 77


>gnl|CDD|35906 KOG0687, KOG0687, KOG0687, 26S proteasome regulatory complex,
           subunit RPN7/PSMD6 [Posttranslational modification,
           protein turnover, chaperones].
          Length = 393

 Score = 25.2 bits (55), Expect = 5.1
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 45  SSRLAQLCAENEKRLKEFD-KITRELNTLSENE 76
              L  +   NE+++KE D KI      L E+E
Sbjct: 70  QDLLNSMKKANEEKIKELDEKIEDAEENLGESE 102


>gnl|CDD|31956 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
          Length = 682

 Score = 25.2 bits (55), Expect = 5.2
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 58  RLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARD 97
            L ++D  T E   L + E    F+ E  V+  +   A D
Sbjct: 389 TLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADD 428


>gnl|CDD|177216 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional.
          Length = 335

 Score = 25.2 bits (56), Expect = 5.5
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 1   MKKYITLLTVLLISNVLNLY 20
                 LL +L++S+++ LY
Sbjct: 264 SNNMFFLLFILIMSSLITLY 283


>gnl|CDD|38845 KOG3639, KOG3639, KOG3639, C2 Ca2+-binding motif-containing protein
           [General function prediction only].
          Length = 1239

 Score = 25.1 bits (54), Expect = 5.8
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 54  ENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYR 113
           E   +L EF     E    +E +++A FE +++       +A  +        E   +  
Sbjct: 192 EEMIKLGEFQLFANEPLKAAERDEEADFEADEE-----ASDAEIKAEIRELIEEHTEEVA 246

Query: 114 YGNGYYRNYRSQ 125
             +   R    Q
Sbjct: 247 QKHDELRKSLLQ 258


>gnl|CDD|37571 KOG2360, KOG2360, KOG2360, Proliferation-associated nucleolar
           protein (NOL1) [Cell cycle control, cell division,
           chromosome partitioning].
          Length = 413

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 36  IATCAKPGYSSRLAQLCAENEKRLKEFDKITRELNTLSENEKKA 79
           I TCA PG  +        N+ ++  F++  +   TL +  K A
Sbjct: 218 IDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIA 261


>gnl|CDD|34786 COG5187, RPN7, 26S proteasome regulatory complex component,
           contains PCI domain [Posttranslational modification,
           protein turnover, chaperones].
          Length = 412

 Score = 25.0 bits (54), Expect = 5.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 45  SSRLAQLCAENEKRLKEFDKITRELNTLS 73
             R+  L  +NE++++E D+  RE    +
Sbjct: 81  RGRMNTLLKKNEEKIEELDERIREKEEDN 109


>gnl|CDD|31717 COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and
           metabolism].
          Length = 167

 Score = 24.4 bits (53), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 58  RLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLN 92
            LK  +    + ++L E  +K   EHE+KVTS++N
Sbjct: 69  ELKAIEAPPNKFSSLKELFEKTL-EHEQKVTSSIN 102


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0793    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,464,111
Number of extensions: 66162
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 45
Length of query: 125
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,491,799
Effective search space: 193147357
Effective search space used: 193147357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)