RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780984|ref|YP_003065397.1| hypothetical protein
CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 31.1 bits (69), Expect = 0.084
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 21/65 (32%)

Query: 54  ENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNL-NYNARD----RKHNINQ---- 104
           E  KRL+E D  ++ +    E E +   E  KK   +L  +N R      K+ IN     
Sbjct: 93  EQRKRLQELDAASKVM----EQEWR---EKAKK---DLEEWNQRQSEQVEKNKINNRIAD 142

Query: 105 --FYE 107
             FY+
Sbjct: 143 KAFYQ 147


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.0 bits (66), Expect = 0.17
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 4/22 (18%)

Query: 76 EKKAFFEHEKKVTSNLNYNARD 97
          EK+A     KK+ ++L   A D
Sbjct: 18 EKQAL----KKLQASLKLYADD 35


>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
           kinase domain, signaling protein, transferase, inner
           membrane, membrane; 2.50A {Escherichia coli}
          Length = 299

 Score = 28.2 bits (62), Expect = 0.55
 Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)

Query: 102 INQF-YEARGKYRYGNGYYRNYRSQ 125
           +N     A   Y YG  YY    S+
Sbjct: 273 LNGVIKRASTAYSYGYNYYGYSYSE 297


>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
          gibberellin signaling pathway, hydrolase, nucleus,
          hydrolase receptor; HET: GA4; 1.90A {Oryza sativa
          subsp} PDB: 3ed1_A*
          Length = 365

 Score = 26.7 bits (58), Expect = 1.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 2  KKYITLLTVLLISNVLNLYDAKARRFPT 29
          K  + L T +LISN    Y+   R   T
Sbjct: 12 KTVVPLHTWVLISNFKLSYNILRRADGT 39


>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
           BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
           PDB: 1mql_B* 1mqn_B*
          Length = 221

 Score = 25.9 bits (57), Expect = 2.4
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 43  GYSSRLAQ---LCAENEKRLKEFDKITRELNTLSENEKKAF------FEHEKKVTSNLNY 93
           G+  + ++     A+ +      D+I R+LN + E   + F      F   +    +L  
Sbjct: 23  GFRHQNSEGTGQAADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEK 82

Query: 94  NARDRKHNI 102
              D K ++
Sbjct: 83  YVEDTKIDL 91


>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
           ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
          Length = 559

 Score = 24.7 bits (53), Expect = 6.4
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 55  NEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTS 89
           + K  +   K+   L  L++   ++  E EK +T 
Sbjct: 476 DGKPFQSVSKVDESLEKLADEVDESAKEAEKALTP 510


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,059,436
Number of extensions: 43324
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 25
Length of query: 125
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 44
Effective length of database: 3,729,466
Effective search space: 164096504
Effective search space used: 164096504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)