RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62] (125 letters) >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278 Score = 25.3 bits (55), Expect = 1.9 Identities = 6/19 (31%), Positives = 9/19 (47%) Query: 64 KITRELNTLSENEKKAFFE 82 I E+ L + EK F + Sbjct: 239 AIESEIAELDDEEKVEFLQ 257 >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 Score = 24.5 bits (53), Expect = 2.5 Identities = 8/69 (11%), Positives = 21/69 (30%) Query: 55 NEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRY 114 ++ L ++KI +++ + + + + K T + EA R Sbjct: 12 TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVVRE 71 Query: 115 GNGYYRNYR 123 + Sbjct: 72 ASRRVTGMF 80 >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296 Score = 22.9 bits (48), Expect = 8.4 Identities = 3/19 (15%), Positives = 5/19 (26%) Query: 64 KITRELNTLSENEKKAFFE 82 L +E E + Sbjct: 258 AFEERLTNFTEEEAIEECK 276 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.132 0.375 Gapped Lambda K H 0.267 0.0676 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 463,083 Number of extensions: 19270 Number of successful extensions: 55 Number of sequences better than 10.0: 1 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 14 Length of query: 125 Length of database: 2,407,596 Length adjustment: 75 Effective length of query: 50 Effective length of database: 1,377,846 Effective search space: 68892300 Effective search space used: 68892300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (22.4 bits)