RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780984|ref|YP_003065397.1| hypothetical protein
CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
           domain {Haemophilus influenzae [TaxId: 727]}
          Length = 278

 Score = 25.3 bits (55), Expect = 1.9
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 64  KITRELNTLSENEKKAFFE 82
            I  E+  L + EK  F +
Sbjct: 239 AIESEIAELDDEEKVEFLQ 257


>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
           nucleotide-binding domains {Bacillus subtilis [TaxId:
           1423]}
          Length = 273

 Score = 24.5 bits (53), Expect = 2.5
 Identities = 8/69 (11%), Positives = 21/69 (30%)

Query: 55  NEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRY 114
            ++ L  ++KI  +++ +  + +    +  K  T              +   EA    R 
Sbjct: 12  TKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVVRE 71

Query: 115 GNGYYRNYR 123
            +       
Sbjct: 72  ASRRVTGMF 80


>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
           domain {Fission yeast (Schizosaccharomyces pombe)
           [TaxId: 4896]}
          Length = 296

 Score = 22.9 bits (48), Expect = 8.4
 Identities = 3/19 (15%), Positives = 5/19 (26%)

Query: 64  KITRELNTLSENEKKAFFE 82
                L   +E E     +
Sbjct: 258 AFEERLTNFTEEEAIEECK 276


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,083
Number of extensions: 19270
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 14
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)