BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780984|ref|YP_003065397.1| hypothetical protein
CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score =  255 bits (651), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60
           MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK
Sbjct: 1   MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60

Query: 61  EFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYR 120
           EFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYR
Sbjct: 61  EFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYR 120

Query: 121 NYRSQ 125
           NYRSQ
Sbjct: 121 NYRSQ 125


>gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 85

 Score = 63.5 bits (153), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 38/49 (77%)

Query: 65  ITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYR 113
           ITR +  L +++KKAFF HEKKV  +LNYNA DRK NI++ Y+AR KYR
Sbjct: 18  ITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYR 66


>gi|254780981|ref|YP_003065394.1| hypothetical protein CLIBASIA_04410 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 122

 Score = 45.8 bits (107), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 1  MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60
          MKKY T+LT+L +S+ +N         P    E+ + +   P  +  L  L AENEK  K
Sbjct: 1  MKKYFTILTMLFVSSAIN---------PCGIEEDNLKSSPLPHIA--LESLSAENEK--K 47

Query: 61 EFDKITRELNTLSENEKKAFFEHEKKVTSN 90
          E  +  +++    EN KK F EHEKK T +
Sbjct: 48 ELSEHEKKVIESQENPKKQFSEHEKKETDD 77


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score = 25.0 bits (53), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 70  NTLSENEKKAFFEHEKKVTS 89
           +TLSE EK+ + EH KK+ +
Sbjct: 410 HTLSEKEKQDWLEHRKKMLT 429


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 23.1 bits (48), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 42  PGYS--------SRLAQLCAENEKRL---KEFDKITRELNTLSENEKKAFFEHEKKVTS 89
           PG+S        +  A + A   +RL   +EF+    ++   +E    A  E EKK+T+
Sbjct: 350 PGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA 408


>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 411

 Score = 21.9 bits (45), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 31 GSEERIATCAKPGYSSRLAQLCAE 54
          G E  +   A  G + RLA+LC +
Sbjct: 33 GQEVAMVVSAMSGETDRLAELCRQ 56


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 21.2 bits (43), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 46  SRLAQLCAENEKRLKEFDKITRELNTLSENEK 77
           ++ ++   E+ KRL+EF  +   ++ +S  EK
Sbjct: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREK 409


>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 542

 Score = 21.2 bits (43), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 73  SENEKKAFFEHEKKVTSNLNYNARD 97
           SE + +  FE  KK+TS     A D
Sbjct: 135 SEQQTEDIFEESKKITSYQIIEAND 159


>gi|254780611|ref|YP_003065024.1| RNA polymerase factor sigma-32 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 302

 Score = 20.8 bits (42), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 50  QLCAENEKRLKEFDKITRELNTLSENEKKAF 80
           Q+  E E+R    + +TR ++ L+  E++ F
Sbjct: 213 QVLIEKEERKNRRNMLTRSMSVLNPRERRIF 243


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,097
Number of Sequences: 1233
Number of extensions: 2955
Number of successful extensions: 13
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 125
length of database: 328,796
effective HSP length: 64
effective length of query: 61
effective length of database: 249,884
effective search space: 15242924
effective search space used: 15242924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)