Query gi|254780985|ref|YP_003065398.1| hypothetical protein CLIBASIA_04430 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 02:24:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780985.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam11736 DUF3299 Protein of u 65.3 1.6 4.1E-05 24.2 -0.2 15 26-40 73-87 (144)
2 COG3495 Uncharacterized protei 35.3 10 0.00026 20.3 -0.1 11 30-40 95-105 (166)
3 pfam12129 Phtf-FEM1B_bdg Male 32.3 29 0.00075 17.9 1.9 22 2-24 40-61 (159)
4 pfam10941 DUF2620 Protein of u 32.1 18 0.00046 19.0 0.8 13 27-39 42-54 (117)
5 KOG2535 consensus 29.3 15 0.00039 19.4 -0.0 25 10-34 169-193 (554)
6 cd01260 PH_CNK Connector enhan 21.8 42 0.0011 17.2 1.1 23 16-38 60-82 (96)
7 pfam02959 Tax HTLV Tax. Human 17.0 53 0.0013 16.7 0.7 17 24-40 8-24 (169)
8 PRK13372 pcmA protocatechuate 14.4 1E+02 0.0026 15.2 1.7 30 5-36 193-222 (444)
9 pfam10856 DUF2678 Protein of u 14.2 48 0.0012 16.9 -0.1 19 21-39 47-65 (114)
10 KOG3731 consensus 12.4 69 0.0018 16.1 0.3 14 27-40 126-139 (541)
No 1
>pfam11736 DUF3299 Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.
Probab=65.29 E-value=1.6 Score=24.20 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=11.2
Q ss_pred CCCCEEEEEEEHHHC
Q ss_conf 642012433000000
Q gi|254780985|r 26 PEGYRTYYFGACVHH 40 (47)
Q Consensus 26 pegyrtyyfgacvhh 40 (47)
-|-+-.=|||||+|-
T Consensus 73 ~eFlLVPy~GACiHv 87 (144)
T pfam11736 73 TEFLLVPYFGACIHV 87 (144)
T ss_pred EEEEECCCCCCEECC
T ss_conf 799974877746538
No 2
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.32 E-value=10 Score=20.26 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=8.2
Q ss_pred EEEEEEEHHHC
Q ss_conf 12433000000
Q gi|254780985|r 30 RTYYFGACVHH 40 (47)
Q Consensus 30 rtyyfgacvhh 40 (47)
-.-|+|||.|-
T Consensus 95 LVPy~GACiHv 105 (166)
T COG3495 95 LVPYTGACIHV 105 (166)
T ss_pred EECCCCCEEEC
T ss_conf 60356721306
No 3
>pfam12129 Phtf-FEM1B_bdg Male germ-cell putative homeodomain transcription factor. This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHT
Probab=32.32 E-value=29 Score=17.93 Aligned_cols=22 Identities=45% Similarity=0.856 Sum_probs=17.9
Q ss_pred CCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 87655884589998506886678
Q gi|254780985|r 2 TKGKKKPDIIRLEYLDRGNTFSS 24 (47)
Q Consensus 2 tkgkkkpdiirleyldrgntfss 24 (47)
..|+-|||.|... |-||.||+.
T Consensus 40 K~~~lK~dLIDVD-LVRGStF~K 61 (159)
T pfam12129 40 KNGHLKPDLIDVD-LVRGSTFAK 61 (159)
T ss_pred CCCCCCCCCEEEE-EECCCCCCC
T ss_conf 3478880013332-012666566
No 4
>pfam10941 DUF2620 Protein of unknown function DUF2620. This is a bacterial family of proteins with unknown function.
Probab=32.13 E-value=18 Score=18.97 Aligned_cols=13 Identities=46% Similarity=1.009 Sum_probs=10.0
Q ss_pred CCCEEEEEEEHHH
Q ss_conf 4201243300000
Q gi|254780985|r 27 EGYRTYYFGACVH 39 (47)
Q Consensus 27 egyrtyyfgacvh 39 (47)
.|--.||||||-.
T Consensus 42 ~G~aDYYiGACnT 54 (117)
T pfam10941 42 NGKADYYIGACNT 54 (117)
T ss_pred CCCCCEEEEECCC
T ss_conf 6996766664478
No 5
>KOG2535 consensus
Probab=29.26 E-value=15 Score=19.35 Aligned_cols=25 Identities=40% Similarity=0.833 Sum_probs=21.4
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 5899985068866788642012433
Q gi|254780985|r 10 IIRLEYLDRGNTFSSPPEGYRTYYF 34 (47)
Q Consensus 10 iirleyldrgntfssppegyrtyyf 34 (47)
+-..||.--|.||-|-||.||.|+.
T Consensus 169 vDKVE~i~MGGTFMsLPe~YRd~FI 193 (554)
T KOG2535 169 VDKVEFIVMGGTFMSLPEEYRDYFI 193 (554)
T ss_pred CCEEEEEEECCEEECCHHHHHHHHH
T ss_conf 4206899845622058088899999
No 6
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.76 E-value=42 Score=17.15 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=15.8
Q ss_pred ECCCCCCCCCCCCCEEEEEEEHH
Q ss_conf 50688667886420124330000
Q gi|254780985|r 16 LDRGNTFSSPPEGYRTYYFGACV 38 (47)
Q Consensus 16 ldrgntfssppegyrtyyfgacv 38 (47)
..+.+.|.-...+.|||||.|--
T Consensus 60 ~~k~~~F~i~~~~~rty~f~A~s 82 (96)
T cd01260 60 VKKKYAFKVCHPVYKSFYFAAET 82 (96)
T ss_pred CCCCEEEEEECCCCCEEEEECCC
T ss_conf 68865999816999689999099
No 7
>pfam02959 Tax HTLV Tax. Human T-cell leukaemia virus type I (HTLV-I) is the etiological agent for adult T-cell leukaemia (ATL), as well as for tropical spastic paraparesis (TSP) and HTLV-I associate myelopathy (HAM). A biological understanding of the involvement of HTLV-I and in ATL has focused significantly on the workings of the virally-encoded 40 kDa phospho-oncoprotein, Tax. Tax is a transcriptional activator. Its ability to modulate the expression and function of many cellular genes has been reasoned to be a major contributory mechanism explaining HTLV-I-mediated transformation of cells. In activating cellular gene expression, Tax impinges upon several cellular signal-transduction pathways, including those for CREB/ATF and NF-kappaB.
Probab=17.02 E-value=53 Score=16.68 Aligned_cols=17 Identities=47% Similarity=0.821 Sum_probs=13.0
Q ss_pred CCCCCCEEEEEEEHHHC
Q ss_conf 88642012433000000
Q gi|254780985|r 24 SPPEGYRTYYFGACVHH 40 (47)
Q Consensus 24 sppegyrtyyfgacvhh 40 (47)
|---||-.|-||.||..
T Consensus 8 sll~gypvyvfgdcvq~ 24 (169)
T pfam02959 8 SLLFGYPVYVFGDCVQG 24 (169)
T ss_pred HHHCCCCEEEECCCCCC
T ss_conf 12237734787440124
No 8
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=14.43 E-value=1e+02 Score=15.24 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=21.6
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 55884589998506886678864201243300
Q gi|254780985|r 5 KKKPDIIRLEYLDRGNTFSSPPEGYRTYYFGA 36 (47)
Q Consensus 5 kkkpdiirleyldrgntfssppegyrtyyfga 36 (47)
++|||++-+-|-|.+..|+- +-|-|+-.|+
T Consensus 193 e~kPDV~ilvYNDH~t~Ffl--d~~pTFAiG~ 222 (444)
T PRK13372 193 EHLPDVIILVYNDHATAFDL--EIIPTFAIGT 222 (444)
T ss_pred HCCCCEEEEEECCCCHHHHH--CCCCHHHCCC
T ss_conf 65999899996475233211--0485243013
No 9
>pfam10856 DUF2678 Protein of unknown function (DUF2678). This family of proteins has no known function.
Probab=14.25 E-value=48 Score=16.86 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=14.8
Q ss_pred CCCCCCCCCEEEEEEEHHH
Q ss_conf 6678864201243300000
Q gi|254780985|r 21 TFSSPPEGYRTYYFGACVH 39 (47)
Q Consensus 21 tfssppegyrtyyfgacvh 39 (47)
-|+++|.--..+||++|+-
T Consensus 47 vfp~~PP~plnifFa~cI~ 65 (114)
T pfam10856 47 VFPTPPPIPLNIFFAVCII 65 (114)
T ss_pred HCCCCCCCCCEEHHHHHHH
T ss_conf 1578999740008999999
No 10
>KOG3731 consensus
Probab=12.41 E-value=69 Score=16.09 Aligned_cols=14 Identities=43% Similarity=1.006 Sum_probs=10.7
Q ss_pred CCCEEEEEEEHHHC
Q ss_conf 42012433000000
Q gi|254780985|r 27 EGYRTYYFGACVHH 40 (47)
Q Consensus 27 egyrtyyfgacvhh 40 (47)
.||||+|||--+|.
T Consensus 126 ~GYrT~~~GKylne 139 (541)
T KOG3731 126 QGYRTAFFGKYLNE 139 (541)
T ss_pred HCEEEECCHHHCCC
T ss_conf 16002003112266
Done!